Citrus Sinensis ID: 022736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHccccccEEEEEEcccccccccHHHHHHcccccccccEEEEEcccEEEEEccHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHcccccccccccccEEEEEEEcccHHHHHHHccccccHHHHHHHHHHccEEEEEccccccccccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHcccccHHHHccccccccccccEEEEEEEccccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccccccccccccEEEEEEEccccccHHHHHHHHHHccccccEEEEcccccccEcEcHHHHHcccccccHHHHHHHccccEEccHHHHHHHHHHHHHHHcccccEEEEEcccccccccHHEEEccHHHHHHHHHcccEEEEEEHHHHHHHHHccHHHHHcccHHHHHHHHcEEEEEccccccHHHHcHHHHHHHHHHHHcccccEEEEEccccccHHHHHccccccHHHHHHcHHHHHHHHcccccccHHccccEEEEEccccccHHHHHHHHHc
Coil and Loop (DISEMBL)
medeeedpplavridetthefsnshenddvsvGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLettglanpaplasvLWLDDQLESAVRLDSIITVVDAKNLLFQIdkyrhlssypeaiHQIAFADVVILNkvdlvspersgdslDELEKEIHEINSLAHVIRSVRCQvdlsevlncraydaTHVTRLEGLleehqykssqnlhdnnvrtlsiceplavNLDKVILQIAS
Flexible Loop (DISEMBL)
medeeedpplavRIDETThefsnshenddvsVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLEttglanpapLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSIceplavnldKVILQIAS
Low Complexity Region (SEG)
MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Disordered region (IsUnstruct)
*****************************VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV*************KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI**
Disordered Region (DISOPRED)
***EEEDPPLA**********************VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH*SSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG************LHDNNVRTLSICEPLAVNLDKVILQIAS
Disordered Region (DISEMBL)
*********LAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Disordered Region (DISPRO)
******DPPLAVRID*************DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q99MB4	394	COBW domain-containing pr	yes	no	0.918	0.682	0.424	6e-53
Q8VEH6	393	COBW domain-containing pr	yes	no	0.798	0.595	0.465	2e-52
Q9BRT8	395	COBW domain-containing pr	yes	no	0.767	0.569	0.460	4e-52
Q8IUF1	395	COBW domain-containing pr	yes	no	0.767	0.569	0.456	1e-51
Q5JTY5	395	COBW domain-containing pr	yes	no	0.767	0.569	0.452	2e-50
Q4V339	395	COBW domain-containing pr	yes	no	0.767	0.569	0.447	5e-50
Q5RIA9	395	COBW domain-containing pr	yes	no	0.767	0.569	0.447	6e-50
O74310	411	COBW domain-containing pr	yes	no	0.723	0.515	0.459	2e-47
P53729	429	Uncharacterized protein Y	yes	no	0.791	0.540	0.365	8e-39
Q869Q0	475	COBW domain-containing pr	no	no	0.744	0.458	0.348	9e-32

>sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2

 Score =  207 bits (528), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/278 (42%), Positives = 176/278 (63%), Gaps = 9/278 (3%)

Query: 2   EDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRI 61
           E+  ED P  V I ET H+    + +  + + VT++TG+LGAGK+TL+NYIL  +H ++I
Sbjct: 12  EEYAEDCPELVPI-ETKHQEKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNRKI 70

Query: 62  AVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERL 121
           AVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + 
Sbjct: 71  AVILNEFGEGSAVEKSLAV-SQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKF 129

Query: 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181
           D+ILLETTGLA+P  +AS+ W+D +L S + LD IITVVD+K  L  + + +      EA
Sbjct: 130 DYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEA 189

Query: 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241
             Q+A AD++++NK DLVS E     L++L   I  IN L  V+ + R +  LS +L+  
Sbjct: 190 TRQVALADMILINKTDLVSEEE----LNKLRTTIRSINGLGKVLETQRSRTHLSNILDLH 245

Query: 242 AYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 279
           AYD      L+  L   Q+ S+    D ++ T++   P
Sbjct: 246 AYDTLSGISLQKKL---QHVSTAPHLDQSIVTVTFDVP 280

Rattus norvegicus (taxid: 10116)

>sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 160/245 (65%), Gaps = 11/245 (4%)

Query: 2   EDEEEDPPLAVRIDETTHEFSNSHENDD--VSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
           E+  ED P  V I+    E     EN D    + VT++TG+LGAGK+TL+NYIL  +H +
Sbjct: 12  EEYAEDCPELVPIETKNQE----EENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNR 67

Query: 60  RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
           +IAVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K 
Sbjct: 68  KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKG 126

Query: 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179
           + D+ILLETTGLA+P  +AS+ W+D +L S + LD IITVVD+K  L  + + +      
Sbjct: 127 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVN 186

Query: 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239
           EA  Q+A AD++++NK DLVS E     L+ L   I  IN L  V+ + R +V LS +L+
Sbjct: 187 EATRQVALADMILINKTDLVSEEE----LNNLRTTIRSINGLGKVLETQRSRVHLSNILD 242

Query: 240 CRAYD 244
             AYD
Sbjct: 243 LHAYD 247

Mus musculus (taxid: 10090)

>sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1

 Score =  205 bits (521), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/230 (46%), Positives = 153/230 (66%), Gaps = 5/230 (2%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNEFGE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
            +AS+ W+D +L S + LD IIT+VD+K  L  + + +      EA  Q+A AD +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINK 204

Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
            DLV PE   + + +L   I  IN L  ++ + R +VDLS VL+  A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250

Homo sapiens (taxid: 9606)

>sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/230 (45%), Positives = 153/230 (66%), Gaps = 5/230 (2%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNEFGE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
            +AS+ W+D +L S + LD IIT+VD+K  L  + + +      EA  Q+A AD +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILINK 204

Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
            DLV PE   + + +L   I  IN L  ++ + R +VDLS VL+  A+D+
Sbjct: 205 TDLV-PE---EDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250

Homo sapiens (taxid: 9606)

>sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 152/230 (66%), Gaps = 5/230 (2%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNE GE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
            +AS+ W+D +L S + LD IIT+VD+K  L  + + +      EA  Q+A AD++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204

Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
            DLV PE   + + +L   I  IN L  ++ + R +VDLS VL+  A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250

Homo sapiens (taxid: 9606)

>sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1

 Score =  198 bits (503), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/230 (44%), Positives = 152/230 (66%), Gaps = 5/230 (2%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNE GE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
            +AS+ W+D +L S + LD IIT+VD+K  L  + + +      EA  Q+A AD++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204

Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
            DLV PE   + + +L   +  IN L  ++ + R +VDLS VL+  A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTLRSINGLGQILETQRSRVDLSNVLDLHAFDS 250

Homo sapiens (taxid: 9606)

>sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1

 Score =  197 bits (502), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 103/230 (44%), Positives = 151/230 (65%), Gaps = 5/230 (2%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNE GE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
            + S+ W+D +L S + LD IIT+VD+K  L  + + +      EA  Q+A AD++++NK
Sbjct: 145 AVTSMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204

Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
            DLV PE   + + +L   I  IN L  ++ + R +VDLS VL+  A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250

Homo sapiens (taxid: 9606)

>sp|O74310|YOG5_SCHPO COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/222 (45%), Positives = 152/222 (68%), Gaps = 10/222 (4%)

Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           V VT++TGFLGAGK++L+  IL  ++GKR+AV++NE G+   +ER+++ +  G  L EEW
Sbjct: 61  VPVTILTGFLGAGKTSLLRSILENRNGKRVAVLMNEVGDSGDLERSLMEDVGGEELYEEW 120

Query: 92  VELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAV 151
           V L+NGC+CCTVK + ++ALE+++++K R D+I++ETTG+ANP PLA   WLDD L+S V
Sbjct: 121 VALSNGCMCCTVKDNGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDALKSDV 180

Query: 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDEL 211
           +LD I+TV+D KN    ID      S    I QI+ AD +ILNK DL+S E    +L  +
Sbjct: 181 KLDGIVTVIDCKN----IDNILKDESDIGFI-QISHADCLILNKTDLISSE----ALSVV 231

Query: 212 EKEIHEINSLAHVIRSVRCQV-DLSEVLNCRAYDATHVTRLE 252
            + I +IN LA +I +   ++ D+SE+L+  AY   + + LE
Sbjct: 232 RQTILKINCLAKIIETTYGRLDDISEILDLDAYGNENTSNLE 273

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1

 Score =  160 bits (406), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 91/249 (36%), Positives = 155/249 (62%), Gaps = 17/249 (6%)

Query: 13  RIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72
           +++ T+   ++ HE   + V  ++ITG+LG+GKSTL+  I      K+IAVILNEFG+  
Sbjct: 54  QVENTSAGATDVHEKKRIPV--SIITGYLGSGKSTLLEKIALKGADKKIAVILNEFGDSS 111

Query: 73  GVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RLDHILLETTGL 131
            +E+AM  +  G    +EW++L NGC+CC++K+  V+A+E +V+R   ++D+ILLET+G+
Sbjct: 112 EIEKAMTIK-NGSNSYQEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSGI 170

Query: 132 ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-----FQIDKYRHL------SSYPE 180
           A+PAP+A + W D+ L S+V +D IITV+D +++L       ID + H        +   
Sbjct: 171 ADPAPIAKMFWQDEGLNSSVYIDGIITVLDCEHILKCLDDISIDAHWHGDKVGLEGNLTI 230

Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
           A  Q+A AD +I+NK D +  E S + + +L++ + EINS+A +  +      +  +L+ 
Sbjct: 231 AHFQLAMADRIIMNKYDTI--EHSPEMVKQLKERVREINSIAPMFFTKYSDTPIQNLLDI 288

Query: 241 RAYDATHVT 249
            AYD+  ++
Sbjct: 289 HAYDSVRIS 297

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q869Q0|Y4527_DICDI COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1

 Score =  137 bits (345), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 139/250 (55%), Gaps = 32/250 (12%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGAL------ 87
           V+V++GFLG+GK+TL+NYILN  HG +IAVI+N+   E+ ++  +I E E          
Sbjct: 45  VSVLSGFLGSGKTTLLNYILNSNHGLKIAVIVNDMS-EVNIDSKLILENEFKITRTKATE 103

Query: 88  --VEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD- 144
             VE  VE++NGCICCT++  L+  + +L + K R D++++E++G++ P P+A     + 
Sbjct: 104 KQVEAVVEMSNGCICCTMREDLLVEVTKLAKEK-RFDYLIIESSGISEPLPIAETFTFEI 162

Query: 145 ----DQLESAVRLDSIITVVDAKNLLFQI-------DKYRHLSSYPEA------IHQIAF 187
               + L+   +LD+++TVVD    L Q        DK    +   E       + Q+ F
Sbjct: 163 DGSIENLKDYTKLDTMVTVVDCSTWLEQYQSGESLKDKDMQATDQDERSLVDLLLDQVEF 222

Query: 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH 247
           ++V++LNK DLVS ER    +  +E  I  IN  A ++RS    V L E+LN   +D   
Sbjct: 223 SNVILLNKCDLVSEER----VKTIEGLIKHINPEARLLRSTNSVVPLKEILNTGLFDFKK 278

Query: 248 VTRLEGLLEE 257
            +   G L+E
Sbjct: 279 ASEHPGWLKE 288

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
297738062	621	unnamed protein product [Vitis vinifera]	0.982	0.463	0.793	1e-127
225423525	368	PREDICTED: COBW domain-containing protei	0.982	0.782	0.793	1e-126
145336129	374	Cobalamin biosynthesis CobW-like protein	0.979	0.767	0.735	1e-118
62321492	364	hypothetical protein [Arabidopsis thalia	0.979	0.788	0.735	1e-118
297845544	374	hypothetical protein ARALYDRAFT_472757 [	0.979	0.767	0.721	1e-117
224101437	375	predicted protein [Populus trichocarpa]	0.993	0.776	0.733	1e-115
449523868	367	PREDICTED: COBW domain-containing protei	0.965	0.771	0.739	1e-114
449452867	374	PREDICTED: COBW domain-containing protei	0.965	0.756	0.721	1e-113
255542064	413	protein with unknown function [Ricinus c	0.969	0.687	0.737	1e-113
147802500	601	hypothetical protein VITISV_040646 [Viti	0.880	0.429	0.728	1e-111

>gi|297738062|emb|CBI27263.3| unnamed protein product [Vitis vinifera]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 258/291 (88%), Gaps = 3/291 (1%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           ME+E+EDPPLAV I+++T   S   +NDDVSVGVTVITG+LGAGKST VN+ILN +HGKR
Sbjct: 1   MEEEDEDPPLAVEINKSTPPQS---QNDDVSVGVTVITGYLGAGKSTFVNFILNSQHGKR 57

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEG+ GALVEEWVELANGCICCTVKHSLVQALEQLVQ KER
Sbjct: 58  IAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKER 117

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
           LDHILLETTGLANPAPLASVLWLDDQLES+VRLDSIITVVDAKNL FQ++ +   SS+PE
Sbjct: 118 LDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITVVDAKNLRFQLNSHHGSSSFPE 177

Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
           A  QIAFADVVILNKVDLVSPE SG  L+ELEKEIH INSLA++I SVRCQVDLS++L+C
Sbjct: 178 AFLQIAFADVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDC 237

Query: 241 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 291
           RAYDATH T LE LLEE+Q  SS++LHD+NVRTL I EPL V+LDKV L +
Sbjct: 238 RAYDATHATHLEALLEENQSLSSKDLHDSNVRTLCISEPLPVDLDKVRLWL 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423525|ref|XP_002274691.1| PREDICTED: COBW domain-containing protein 1-like [Vitis vinifera]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 258/291 (88%), Gaps = 3/291 (1%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           ME+E+EDPPLAV I+++T   S   +NDDVSVGVTVITG+LGAGKST VN+ILN +HGKR
Sbjct: 1   MEEEDEDPPLAVEINKSTPPQS---QNDDVSVGVTVITGYLGAGKSTFVNFILNSQHGKR 57

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEG+ GALVEEWVELANGCICCTVKHSLVQALEQLVQ KER
Sbjct: 58  IAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKER 117

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
           LDHILLETTGLANPAPLASVLWLDDQLES+VRLDSIITVVDAKNL FQ++ +   SS+PE
Sbjct: 118 LDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITVVDAKNLRFQLNSHHGSSSFPE 177

Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
           A  QIAFADVVILNKVDLVSPE SG  L+ELEKEIH INSLA++I SVRCQVDLS++L+C
Sbjct: 178 AFLQIAFADVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDC 237

Query: 241 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 291
           RAYDATH T LE LLEE+Q  SS++LHD+NVRTL I EPL V+LDKV L +
Sbjct: 238 RAYDATHATHLEALLEENQSLSSKDLHDSNVRTLCISEPLPVDLDKVRLWL 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336129|ref|NP_173974.3| Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana] gi|63147374|gb|AAY34160.1| At1g26520 [Arabidopsis thaliana] gi|332192579|gb|AEE30700.1| Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/291 (73%), Positives = 249/291 (85%), Gaps = 4/291 (1%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           MED++E+PP+AV+I            +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 11  MEDDDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 70

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 71  IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
           LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+TVVDAKNL FQ+++ R  SS+PE
Sbjct: 131 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPE 190

Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
           A +QIAFAD +I+NKVDL+S E S    DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 191 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 246

Query: 241 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 291
           +AYD+THV+RLE LLE ++  ++ +LHD+ VRTL I EP  +NLDKV L +
Sbjct: 247 QAYDSTHVSRLESLLEANKSLTTTDLHDSGVRTLCISEPQPINLDKVRLWL 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62321492|dbj|BAD94941.1| hypothetical protein [Arabidopsis thaliana]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/291 (73%), Positives = 249/291 (85%), Gaps = 4/291 (1%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           MED++E+PP+AV+I            +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 1   MEDDDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 60

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 61  IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 120

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
           LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+TVVDAKNL FQ+++ R  SS+PE
Sbjct: 121 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPE 180

Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
           A +QIAFAD +I+NKVDL+S E S    DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 181 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 236

Query: 241 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 291
           +AYD+THV+RLE LLE ++  ++ +LHD+ VRTL I EP  +NLDKV L +
Sbjct: 237 QAYDSTHVSRLESLLEANKSLTTTDLHDSGVRTLCISEPQPINLDKVRLWL 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845544|ref|XP_002890653.1| hypothetical protein ARALYDRAFT_472757 [Arabidopsis lyrata subsp. lyrata] gi|297336495|gb|EFH66912.1| hypothetical protein ARALYDRAFT_472757 [Arabidopsis lyrata subsp. lyrata]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/291 (72%), Positives = 247/291 (84%), Gaps = 4/291 (1%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           MED++E+PP+A++I            +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 11  MEDDDEEPPMAIQIQPDVSVRKILSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 70

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 71  IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
           LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+TVVDAKNL FQ+++ R  SS+ E
Sbjct: 131 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFSE 190

Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
           A +QIAFAD +I+NKVDL+S E S    DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 191 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 246

Query: 241 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 291
           +AYD+ HV+RLE LLE ++  ++ +LHD+ +RTL I EP  +NLDKV L +
Sbjct: 247 QAYDSNHVSRLESLLETNKSLTTTDLHDSGIRTLCISEPQPINLDKVRLWL 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101437|ref|XP_002312279.1| predicted protein [Populus trichocarpa] gi|222852099|gb|EEE89646.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/296 (73%), Positives = 254/296 (85%), Gaps = 5/296 (1%)

Query: 1   MEDEEEDPPLAVRIDETTH-EFSNSH----ENDDVSVGVTVITGFLGAGKSTLVNYILNG 55
           ME EE+D PLAV ++ET   + S+SH    + +DV VGVTVITG+LG+GKSTLVN+ILN 
Sbjct: 1   MEKEEDDAPLAVELEETVPVKPSSSHSKQPQGEDVPVGVTVITGYLGSGKSTLVNHILNT 60

Query: 56  KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV 115
           +HGKRIAVILNEFGEEIGVERAMINEGE GALVEEWVELANGC+CCTVKHSLVQALEQLV
Sbjct: 61  QHGKRIAVILNEFGEEIGVERAMINEGEDGALVEEWVELANGCVCCTVKHSLVQALEQLV 120

Query: 116 QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHL 175
           Q KERLDHILLETTGLANPAPLASVLWLDDQLESAV+LDSIITVVDAKNL +Q+++ ++ 
Sbjct: 121 QMKERLDHILLETTGLANPAPLASVLWLDDQLESAVKLDSIITVVDAKNLHYQLNELQNS 180

Query: 176 SSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLS 235
           SS+PEA  QIAFADV+ILNKVDLVS   SG++L ELE EIH+INSLA++I SVRCQVDLS
Sbjct: 181 SSFPEASLQIAFADVIILNKVDLVSLGGSGEALKELENEIHKINSLANIIHSVRCQVDLS 240

Query: 236 EVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 291
           ++LNCRAYD+ H   LE LLEE +  S+ +LHD+++RTL ICE   V+LDKV L +
Sbjct: 241 KILNCRAYDSKHFGHLEVLLEESKSLSTSDLHDSSLRTLCICESQKVDLDKVRLWL 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523868|ref|XP_004168945.1| PREDICTED: COBW domain-containing protein 1-like [Cucumis sativus]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/284 (73%), Positives = 240/284 (84%), Gaps = 1/284 (0%)

Query: 4   EEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAV 63
           E+EDPPLAV I ET       HE+D VSVGVTVITG+LGAGKSTLVNY+LN +HGKRIAV
Sbjct: 2   EDEDPPLAVEIGETITAVQQ-HEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60

Query: 64  ILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 123
           ILNEFGEEIG+ERAMINEG+GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120

Query: 124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183
           ILLETTGLANPAPLASVLWLDDQLES+++LDSIITVVDAKNL FQ++++R  SS+PEA H
Sbjct: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180

Query: 184 QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243
           QI FAD +ILNKVDLVS +R   +L++LE EI  INSLA +I SVRCQVDLS +L+C +Y
Sbjct: 181 QIVFADTIILNKVDLVSSDRGDGALEDLEYEIRNINSLAKIIHSVRCQVDLSLILDCNSY 240

Query: 244 DATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKV 287
           +A +   LE LL+E    S+Q+LHD  VRTL I E   V+LDKV
Sbjct: 241 NAANTAHLEALLKESCSLSTQDLHDTGVRTLCISEHDKVDLDKV 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452867|ref|XP_004144180.1| PREDICTED: COBW domain-containing protein 1-like [Cucumis sativus]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/291 (72%), Positives = 241/291 (82%), Gaps = 8/291 (2%)

Query: 4   EEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAV 63
           E+EDPPLAV I ET       HE+D VSVGVTVITG+LGAGKSTLVNY+LN +HGKRIAV
Sbjct: 2   EDEDPPLAVEIGETITAVQQ-HEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60

Query: 64  ILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 123
           ILNEFGEEIG+ERAMINEG+GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120

Query: 124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183
           ILLETTGLANPAPLASVLWLDDQLES+++LDSIITVVDAKNL FQ++++R  SS+PEA H
Sbjct: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180

Query: 184 QIAFADVVILNKVDLVSPERSGDSLDELEKE-------IHEINSLAHVIRSVRCQVDLSE 236
           QI FAD +ILNKVDLVS +R   +L++LE E       I  INSLA +I SVRCQVDLS 
Sbjct: 181 QIVFADTIILNKVDLVSSDRGDGALEDLEYEIRNINSLIRNINSLAKIIHSVRCQVDLSL 240

Query: 237 VLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKV 287
           +L+C +Y+A +   LE LL+E +  S+Q+LHD  VRTL I E   V+LDKV
Sbjct: 241 ILDCNSYNAANTAHLEALLKESRSLSTQDLHDTGVRTLCISEDDKVDLDKV 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542064|ref|XP_002512096.1| protein with unknown function [Ricinus communis] gi|223549276|gb|EEF50765.1| protein with unknown function [Ricinus communis]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/290 (73%), Positives = 245/290 (84%), Gaps = 6/290 (2%)

Query: 3   DEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIA 62
           + EEDPP+AV I       S     DDVSVGVTVITG+LGAGKSTLVN+ILN +HGKRIA
Sbjct: 2   ENEEDPPVAVEIASE----SERPPTDDVSVGVTVITGYLGAGKSTLVNHILNSQHGKRIA 57

Query: 63  VILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RL 121
           VILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQ KE RL
Sbjct: 58  VILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQMKESRL 117

Query: 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181
           DHI++ETTGLANPAPLASVLWLDDQLES V+LDSI+TVVDAKNL FQ++ +R  +S+PEA
Sbjct: 118 DHIIIETTGLANPAPLASVLWLDDQLESTVKLDSIVTVVDAKNLPFQLNNHRSSTSFPEA 177

Query: 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241
             QIAFADVVILNKVDLVS E   ++L+ELEKEIH INSLA++I SVRC VDLS++LNC+
Sbjct: 178 FLQIAFADVVILNKVDLVSSE-GPEALEELEKEIHNINSLANIIHSVRCHVDLSKILNCQ 236

Query: 242 AYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 291
           AYDATH + LE LLEE +  S++++HD  VRT+ ICE   V+LDKV L +
Sbjct: 237 AYDATHHSHLETLLEESKSLSTRDIHDGGVRTVCICESQQVDLDKVRLWL 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802500|emb|CAN64163.1| hypothetical protein VITISV_040646 [Vitis vinifera]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/291 (72%), Positives = 235/291 (80%), Gaps = 33/291 (11%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           ME+E+EDPPLAV I+++T   S   +NDDVSVGVTVITG+LGAGKST VN+ILN +HGKR
Sbjct: 1   MEEEDEDPPLAVEINKSTPPQS---QNDDVSVGVTVITGYLGAGKSTXVNFILNSQHGKR 57

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEG+ GALVEEWVELANGCICCTVKHSLVQALEQLVQ KER
Sbjct: 58  IAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKER 117

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
           LDHILLETTGLANPAPLASVLWLDDQLES+VRLDSIIT                      
Sbjct: 118 LDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIIT---------------------- 155

Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
                   DVVILNKVDLVSPE SG  L+ELEKEIH INSLA++I SVRCQVDLS++L+C
Sbjct: 156 --------DVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDC 207

Query: 241 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 291
           RAYDATH T LE LLEE+Q  SS++LHD+NVRTL I EPL V+LDKV L +
Sbjct: 208 RAYDATHATHLEALLEENQSLSSKDLHDSNVRTLCISEPLPVDLDKVRLWL 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2197895	374	AT1G26520 "AT1G26520" [Arabido	0.972	0.762	0.740	7.8e-110
UNIPROTKB|Q9BRT8	395	CBWD1 "COBW domain-containing	0.918	0.681	0.432	2.7e-52
DICTYBASE|DDB_G0281589	396	DDB_G0281589 "COBW domain-cont	0.508	0.376	0.506	4.8e-52
UNIPROTKB|Q8IUF1	395	CBWD2 "COBW domain-containing	0.918	0.681	0.425	1.5e-51
RGD|708495	394	Cbwd1 "COBW domain containing	0.911	0.677	0.432	1.5e-51
UNIPROTKB|Q5JTY5	395	CBWD3 "COBW domain-containing	0.918	0.681	0.425	4e-51
UNIPROTKB|Q4V339	395	CBWD6 "COBW domain-containing	0.918	0.681	0.421	5.1e-51
UNIPROTKB|Q5RIA9	395	CBWD5 "COBW domain-containing	0.918	0.681	0.421	1.1e-50
MGI|MGI:2385089	393	Cbwd1 "COBW domain containing	0.907	0.676	0.432	1.1e-50
ZFIN|ZDB-GENE-040426-2388	366	cbwd "COBW domain containing"	0.921	0.737	0.428	3.6e-50

TAIR|locus:2197895 AT1G26520 "AT1G26520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 214/289 (74%), Positives = 248/289 (85%)

Query:     1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
             MED++E+PP+AV+I            +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct:    11 MEDDDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 70

Query:    61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
             IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct:    71 IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130

Query:   121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
             LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+TVVDAKNL FQ+++ R  SS+PE
Sbjct:   131 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPE 190

Query:   181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
             A +QIAFAD +I+NKVDL+S E S    DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct:   191 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 246

Query:   241 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVIL 289
             +AYD+THV+RLE LLE ++  ++ +LHD+ VRTL I EP  +NLDKV L
Sbjct:   247 QAYDSTHVSRLESLLEANKSLTTTDLHDSGVRTLCISEPQPINLDKVRL 295

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BRT8 CBWD1 "COBW domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 122/282 (43%), Positives = 177/282 (62%)

Query:     3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
             DEEEDP     P  V I ETT             + VT+ITG+LGAGK+TL+NYIL  +H
Sbjct:     9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67

Query:    58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
              KR+AVILNEFGE   +E+++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+
Sbjct:    68 SKRVAVILNEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQK 126

Query:   118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
             K + D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT+VD+K  L  + + +    
Sbjct:   127 KGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGL 186

Query:   178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
               EA  Q+A AD +++NK DLV PE   + + +L   I  IN L  ++ + R +VDLS V
Sbjct:   187 INEATRQVALADAILINKTDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNV 242

Query:   238 LNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 279
             L+  A+D+     L+  L+ H   +  +L D ++ T++   P
Sbjct:   243 LDLHAFDSLSGISLQKKLQ-HVPGTQPHL-DQSIVTITFEVP 282

GO:0005524 "ATP binding" evidence=IEA

DICTYBASE|DDB_G0281589 DDB_G0281589 "COBW domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 418 (152.2 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
 Identities = 77/152 (50%), Positives = 115/152 (75%)

Query:    20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMI 79
             E +NS+ N  V V  T+ITGFLG+GK+T +NYILN  HGK+IAVI NE+G+ IG+E AMI
Sbjct:     3 EVTNSNINKKVPV--TLITGFLGSGKTTFLNYILNENHGKKIAVIQNEYGQSIGIETAMI 60

Query:    80 NEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS 139
              +  G   ++EW+E  NGCICCTVK   +Q++E L++R ++ D+IL+E+TG+ +P  +++
Sbjct:    61 VDSNGEK-IQEWLEFPNGCICCTVKDDFLQSIEDLLKRSDKFDYILIESTGMGDPGQISA 119

Query:   140 VLWLDDQLESAVRLDSIITVVDAKNLLFQIDK 171
              LW+D++LES +  DSIIT+VD+K++   I+K
Sbjct:   120 SLWVDEELESPIYFDSIITLVDSKHIEKHIEK 151

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8IUF1 CBWD2 "COBW domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 120/282 (42%), Positives = 177/282 (62%)

Query:     3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
             DEEEDP     P  V + ETT             + VT+ITG+LGAGK+TL+NYIL  +H
Sbjct:     9 DEEEDPAEEDCPELVPM-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67

Query:    58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
              KR+AVILNEFGE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct:    68 SKRVAVILNEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126

Query:   118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
             K + D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT+VD+K  L  + + +    
Sbjct:   127 KGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGL 186

Query:   178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
               EA  Q+A AD +++NK DLV PE   + + +L   I  IN L  ++ + R +VDLS V
Sbjct:   187 INEATRQVALADAILINKTDLV-PE---EDVKKLRATIRSINGLGQILETQRSRVDLSNV 242

Query:   238 LNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 279
             L+  A+D+     L+  L+ H   +  +L D ++ T++   P
Sbjct:   243 LDLHAFDSLSGISLQKKLQ-HVPGTQPHL-DQSIVTITFEVP 282

GO:0005524 "ATP binding" evidence=IEA

RGD|708495 Cbwd1 "COBW domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 121/280 (43%), Positives = 179/280 (63%)

Query:     2 EDEEEDPPLAVRIDETTHEFSNSHENDD--VSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
             E+  ED P  V I ET H+     EN D  + + VT++TG+LGAGK+TL+NYIL  +H +
Sbjct:    12 EEYAEDCPELVPI-ETKHQ--EKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNR 68

Query:    60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
             +IAVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K 
Sbjct:    69 KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKG 127

Query:   120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179
             + D+ILLETTGLA+P  +AS+ W+D +L S + LD IITVVD+K  L  + + +      
Sbjct:   128 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVN 187

Query:   180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239
             EA  Q+A AD++++NK DLVS E     L++L   I  IN L  V+ + R +  LS +L+
Sbjct:   188 EATRQVALADMILINKTDLVSEEE----LNKLRTTIRSINGLGKVLETQRSRTHLSNILD 243

Query:   240 CRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 279
               AYD      L+  L+ H   ++ +L D ++ T++   P
Sbjct:   244 LHAYDTLSGISLQKKLQ-H-VSTAPHL-DQSIVTVTFDVP 280

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q5JTY5 CBWD3 "COBW domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 120/282 (42%), Positives = 176/282 (62%)

Query:     3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
             DEEEDP     P  V I ETT             + VT+ITG+LGAGK+TL+NYIL  +H
Sbjct:     9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67

Query:    58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
              KR+AVILNE GE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct:    68 SKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126

Query:   118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
             K + D ILLETTGLA+P  +AS+ W+D +L S + LD IIT+VD+K  L  + + +    
Sbjct:   127 KGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGL 186

Query:   178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
               EA  Q+A AD++++NK DLV PE   + + +L   I  IN L  ++ + R +VDLS V
Sbjct:   187 INEATRQVALADIILINKTDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNV 242

Query:   238 LNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 279
             L+  A+D+     L+  L+ H   +  +L D ++ T++   P
Sbjct:   243 LDLHAFDSLSGISLQKKLQ-HVPGTQPHL-DQSIVTITFEVP 282

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q4V339 CBWD6 "COBW domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 119/282 (42%), Positives = 176/282 (62%)

Query:     3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
             DEEEDP     P  V I ETT             + VT+ITG+LGAGK+TL+NYIL  +H
Sbjct:     9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67

Query:    58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
              KR+AVILNE GE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct:    68 SKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126

Query:   118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
             K + D ILLETTGLA+P  +AS+ W+D +L S + LD IIT+VD+K  L  + + +    
Sbjct:   127 KGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGL 186

Query:   178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
               EA  Q+A AD++++NK DLV PE   + + +L   +  IN L  ++ + R +VDLS V
Sbjct:   187 INEATRQVALADIILINKTDLV-PE---EDVKKLRTTLRSINGLGQILETQRSRVDLSNV 242

Query:   238 LNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 279
             L+  A+D+     L+  L+ H   +  +L D ++ T++   P
Sbjct:   243 LDLHAFDSLSGISLQKKLQ-HVPGTQPHL-DQSIVTITFDVP 282

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q5RIA9 CBWD5 "COBW domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 119/282 (42%), Positives = 175/282 (62%)

Query:     3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
             DEEEDP     P  V I ETT             + VT+ITG+LGAGK+TL+NYIL  +H
Sbjct:     9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67

Query:    58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
              KR+AVILNE GE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct:    68 SKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126

Query:   118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
             K + D ILLETTGLA+P  + S+ W+D +L S + LD IIT+VD+K  L  + + +    
Sbjct:   127 KGKFDDILLETTGLADPGAVTSMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGL 186

Query:   178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
               EA  Q+A AD++++NK DLV PE   + + +L   I  IN L  ++ + R +VDLS V
Sbjct:   187 INEATRQVALADIILINKTDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNV 242

Query:   238 LNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 279
             L+  A+D+     L+  L+ H   +  +L D ++ T++   P
Sbjct:   243 LDLHAFDSLSGISLQKKLQ-HVPGTQPHL-DQSIVTITFEVP 282

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:2385089 Cbwd1 "COBW domain containing 1" [Mus musculus (taxid:10090)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 121/280 (43%), Positives = 176/280 (62%)

Query:     2 EDEEEDPPLAVRIDETTHEFSNSHENDD--VSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
             E+  ED P  V I+    E     EN D    + VT++TG+LGAGK+TL+NYIL  +H +
Sbjct:    12 EEYAEDCPELVPIETKNQE----EENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNR 67

Query:    60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
             +IAVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K 
Sbjct:    68 KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKG 126

Query:   120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179
             + D+ILLETTGLA+P  +AS+ W+D +L S + LD IITVVD+K  L  + + +      
Sbjct:   127 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVN 186

Query:   180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239
             EA  Q+A AD++++NK DLVS E     L+ L   I  IN L  V+ + R +V LS +L+
Sbjct:   187 EATRQVALADMILINKTDLVSEEE----LNNLRTTIRSINGLGKVLETQRSRVHLSNILD 242

Query:   240 CRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 279
               AYD      L+  L+ H   ++ +L D ++ T++   P
Sbjct:   243 LHAYDILSGISLQKKLQ-H-VSTAPHL-DQSIVTVTFEVP 279

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-2388 cbwd "COBW domain containing" [Danio rerio (taxid:7955)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 122/285 (42%), Positives = 176/285 (61%)

Query:     1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
             MEDE+E P L V I E               + VT+ITG+LGAGK+TL+NYIL  +H KR
Sbjct:     1 MEDEDECPEL-VPIKEKP-------SGPTAQIPVTIITGYLGAGKTTLLNYILTEQHNKR 52

Query:    61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
             IAVILNEFGE   +E+++    + G L EEW+EL NGC+CC+VK + ++A+E L+++K +
Sbjct:    53 IAVILNEFGEGSALEKSLA-VSQAGELYEEWLELRNGCLCCSVKDNGLKAIENLMEKKGK 111

Query:   121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
              D+ILLETTGLA+P  +AS+ W+D +L S V LD I+TV+DAK  L  + + +      E
Sbjct:   112 FDYILLETTGLADPGAVASMFWVDAELGSDVYLDGIVTVIDAKYGLQHLTEEKPEGLINE 171

Query:   181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
             A  QIA AD+ I+NK DLV        L +L   +  IN L  ++ + + +VDLSEVL+ 
Sbjct:   172 AARQIALADLTIINKTDLVHETE----LLKLRDTVRSINGLVKILETQKSRVDLSEVLDL 227

Query:   241 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLD 285
              ++D     RL   L+    K+SQ   D ++ T++   P +V+ D
Sbjct:   228 HSFDTKDGERLTKKLQ--LVKTSQPHLDKSMLTITFEVPGSVSED 270

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
COG0523	323	COG0523, COG0523, Putative GTPases (G3E family) [G	1e-75
cd03112	158	cd03112, CobW_like, The function of this protein f	6e-63
pfam02492	178	pfam02492, cobW, CobW/HypB/UreG, nucleotide-bindin	2e-58
TIGR02475	341	TIGR02475, CobW, cobalamin biosynthesis protein Co	4e-40
PRK11537	318	PRK11537, PRK11537, putative GTP-binding protein Y	7e-36
TIGR00929	785	TIGR00929, VirB4_CagE, type IV secretion/conjugal	0.002

>gnl|CDD|223597 COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]

 Score =  233 bits (597), Expect = 1e-75
 Identities = 103/245 (42%), Positives = 154/245 (62%), Gaps = 19/245 (7%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGV-ERAMINEGEGGALVEEWV 92
           VTVITGFLG+GK+TL+N++L  + GK+IAVI+NEFGE +G+   A++++       EE V
Sbjct: 3   VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGE-VGIDGGALLSDTG-----EEVV 56

Query: 93  ELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR 152
           EL NGCICCTV+  L+ ALE+L++R++R D +++ETTGLA+PAP+      D +L   VR
Sbjct: 57  ELTNGCICCTVRDDLLPALERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVR 116

Query: 153 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELE 212
           LD ++TVVDA + L  +D     +    A  Q+AFADV++LNK DLV  E     L+ LE
Sbjct: 117 LDGVVTVVDAAHFLEGLD-----AIAELAEDQLAFADVIVLNKTDLVDAE----ELEALE 167

Query: 213 KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLLEEHQYKSSQNLHDNNV 271
             + ++N  A +I +    VDL+E+L+   +D    V R   L  +HQ+       +  +
Sbjct: 168 ARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDRDVGRTSPLFSDHQHDHE--HDEGGI 225

Query: 272 RTLSI 276
            + S+
Sbjct: 226 SSFSV 230

Length = 323

>gnl|CDD|239386 cd03112, CobW_like, The function of this protein family is unkown

 Score =  195 bits (498), Expect = 6e-63
 Identities = 81/169 (47%), Positives = 115/169 (68%), Gaps = 16/169 (9%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE 93
           VTV+TGFLGAGK+TL+N+IL  +HG++IAVI NEFGE +G++  ++ + +     EE +E
Sbjct: 2   VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGE-VGIDNQLVVDTD-----EEIIE 55

Query: 94  LANGCICCTVKHSLVQAL----EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLES 149
           + NGCICCTV+  L++AL    E+L   K   D I++ETTGLA+P P+A   ++D++L  
Sbjct: 56  MNNGCICCTVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAE 115

Query: 150 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198
              LD +IT+VDAK+        +HL    EA  QIAFAD ++LNK DL
Sbjct: 116 RYLLDGVITLVDAKHAN------QHLDQQTEAQSQIAFADRILLNKTDL 158

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. Length = 158

>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain

 Score =  184 bits (469), Expect = 2e-58
 Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 18/194 (9%)

Query: 34  VTVITGFLGAGKSTLVNYIL-NGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWV 92
           VTV+TGFLG+GK+TL+ ++L   + G +IAVI+N+FGE  G++  ++ E          V
Sbjct: 2   VTVLTGFLGSGKTTLLEHLLEKNREGLKIAVIVNDFGE-TGIDAELLRETG-----ALIV 55

Query: 93  ELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR 152
           EL NGCICCT++  L   LE L++ KERLD + +ETTGLA PAP+A       +L S + 
Sbjct: 56  ELNNGCICCTLREDLSMVLEALLELKERLDLLFIETTGLACPAPVAQTFL-SPELRSDLG 114

Query: 153 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELE 212
           LD ++TVVD         +   +    +A  QIAFAD++++NK DL         L++LE
Sbjct: 115 LDGVVTVVDVAE-----TEGEDIP--EKAPDQIAFADLIVINKTDLAPAV---ADLEKLE 164

Query: 213 KEIHEINSLAHVIR 226
            ++  +N  A +I 
Sbjct: 165 ADLRRLNPEAPIIP 178

This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans. Length = 178

>gnl|CDD|233883 TIGR02475, CobW, cobalamin biosynthesis protein CobW

 Score =  142 bits (359), Expect = 4e-40
 Identities = 79/202 (39%), Positives = 115/202 (56%), Gaps = 21/202 (10%)

Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEE 90
           + VT++TGFLGAGK+TL+ ++L    G+RIAVI+NEFG+ +G++  ++   G  G   E 
Sbjct: 4   IPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGD-LGIDGEILKACGIEGCSEEN 62

Query: 91  WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLES 149
            VELANGCICCTV    +  + +L+ R++R DHIL+ET+GLA P PL     W +  + S
Sbjct: 63  IVELANGCICCTVADDFIPTMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPE--IRS 120

Query: 150 AVRLDSIITVVDAKNL--------LFQIDKYR-------HLSSYPEAIH-QIAFADVVIL 193
            V +D ++TVVD   +           +D  R       H +   E    Q+A AD+VIL
Sbjct: 121 RVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQLACADLVIL 180

Query: 194 NKVDLVSPERSGDSLDELEKEI 215
           NK DL+          E+  E+
Sbjct: 181 NKADLLDAAGLARVRAEIAAEL 202

The family of proteins identified by this model is generally found proximal to the trimeric cobaltochelatase subunit CobN which is essential for vitamin B12 (cobalamin) biosynthesis. The protein contains an P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683) [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 341

>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional

 Score =  130 bits (329), Expect = 7e-36
 Identities = 80/265 (30%), Positives = 138/265 (52%), Gaps = 37/265 (13%)

Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           + VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+  +I     G    + 
Sbjct: 4   IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLI-----GDRATQI 57

Query: 92  VELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQL 147
             L NGCICC+  + L  AL  L+   ++     D +++E TG+A+P P+    +  + L
Sbjct: 58  KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 117

Query: 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDS 207
                LD +I +VDA +   Q+++      +  A  Q+ +AD ++L K D+      G++
Sbjct: 118 CQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVGYADRILLTKTDVA-----GEA 166

Query: 208 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 267
            ++L + +  IN+ A V   V   +DLS + N   +          +LEE+   +    H
Sbjct: 167 -EKLRERLARINARAPVYTVVHGDIDLSLLFNTNGF----------MLEENVVSTKPRFH 215

Query: 268 -----DNNVRTLSICEPLAVNLDKV 287
                 N++ ++ +     V++ +V
Sbjct: 216 FIADKQNDISSIVVELDYPVDISEV 240

Length = 318

>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 23  NSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54
           N H  D   +G T+I G  G+GK+TL+N++L 
Sbjct: 425 NFHVRDAKVLGHTLIFGPTGSGKTTLLNFLLA 456

Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	100.0
COG0523	323	Putative GTPases (G3E family) [General function pr	100.0
PRK11537	318	putative GTP-binding protein YjiA; Provisional	100.0
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	100.0
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	100.0
cd03112	158	CobW_like The function of this protein family is u	99.97
COG1159	298	Era GTPase [General function prediction only]	99.92
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.92
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.91
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
PRK00089	292	era GTPase Era; Reviewed	99.8
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.79
PRK15494	339	era GTPase Era; Provisional	99.78
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.78
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.77
COG0218	200	Predicted GTPase [General function prediction only	99.74
COG1160	444	Predicted GTPases [General function prediction onl	99.74
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.73
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.72
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.7
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.68
PRK12298	390	obgE GTPase CgtA; Reviewed	99.68
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.67
COG0486	454	ThdF Predicted GTPase [General function prediction	99.66
PRK13768	253	GTPase; Provisional	99.64
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.63
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.63
PRK12299	335	obgE GTPase CgtA; Reviewed	99.62
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.62
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.62
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.61
cd00881	189	GTP_translation_factor GTP translation factor fami	99.6
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.6
PRK12296	500	obgE GTPase CgtA; Reviewed	99.59
PRK03003	472	GTP-binding protein Der; Reviewed	99.59
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.58
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.58
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.58
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.58
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.58
PRK12297	424	obgE GTPase CgtA; Reviewed	99.58
PRK00093	435	GTP-binding protein Der; Reviewed	99.58
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.57
PRK00093	435	GTP-binding protein Der; Reviewed	99.57
PRK11058	426	GTPase HflX; Provisional	99.57
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.57
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.57
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.56
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.56
COG2262	411	HflX GTPases [General function prediction only]	99.55
PRK09866	741	hypothetical protein; Provisional	99.55
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.55
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.53
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.53
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.53
PRK03003	472	GTP-binding protein Der; Reviewed	99.53
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.53
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.52
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.52
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.52
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.5
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.5
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.48
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.48
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.48
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.48
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.47
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.46
PRK04213	201	GTP-binding protein; Provisional	99.46
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.45
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.44
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.44
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.44
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.44
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.44
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.43
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.43
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.42
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.42
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.41
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.41
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.41
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.41
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.41
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.41
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.41
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.4
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.4
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.4
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.39
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.39
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.39
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.39
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.39
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.39
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.39
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.39
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.39
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.38
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.38
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.38
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.38
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.37
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.37
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.37
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.37
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.37
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.37
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.37
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.37
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.36
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.36
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.36
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.36
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.36
COG1084	346	Predicted GTPase [General function prediction only	99.36
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.36
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.36
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.35
PLN03118	211	Rab family protein; Provisional	99.35
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.35
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.35
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.35
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.34
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.33
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.33
PLN00223	181	ADP-ribosylation factor; Provisional	99.33
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.33
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.33
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.33
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.33
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.32
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.32
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.32
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.32
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.32
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.31
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.31
PTZ00133	182	ADP-ribosylation factor; Provisional	99.31
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.3
COG0536	369	Obg Predicted GTPase [General function prediction	99.3
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.3
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.29
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.29
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.29
PRK05306	787	infB translation initiation factor IF-2; Validated	99.29
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.28
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.28
PTZ00369	189	Ras-like protein; Provisional	99.28
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.27
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.27
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.27
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.27
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.26
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.26
PRK04004	586	translation initiation factor IF-2; Validated	99.26
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.26
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.26
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.25
CHL00189	742	infB translation initiation factor 2; Provisional	99.25
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.25
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.25
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.25
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.25
cd03114	148	ArgK-like The function of this protein family is u	99.24
KOG1534	273	consensus Putative transcription factor FET5 [Tran	99.23
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.23
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.23
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.22
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.22
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.22
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.21
PRK12317	425	elongation factor 1-alpha; Reviewed	99.21
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.21
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.21
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.21
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.2
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.19
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.19
PRK12736	394	elongation factor Tu; Reviewed	99.18
PRK05433	600	GTP-binding protein LepA; Provisional	99.18
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.18
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.17
CHL00071	409	tufA elongation factor Tu	99.17
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.16
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.16
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.16
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.15
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.15
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.15
KOG1533	290	consensus Predicted GTPase [General function predi	99.14
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.14
PLN03110	216	Rab GTPase; Provisional	99.14
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.13
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.13
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.13
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.13
PLN03108	210	Rab family protein; Provisional	99.12
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.12
PRK14974	336	cell division protein FtsY; Provisional	99.11
PRK12735	396	elongation factor Tu; Reviewed	99.11
PRK10218	607	GTP-binding protein; Provisional	99.11
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.1
PLN03127	447	Elongation factor Tu; Provisional	99.08
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.07
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.07
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.07
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.06
PRK00049	396	elongation factor Tu; Reviewed	99.06
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.05
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	99.05
PRK10416	318	signal recognition particle-docking protein FtsY;	99.05
KOG0410	410	consensus Predicted GTP binding protein [General f	99.05
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.05
PRK12739	691	elongation factor G; Reviewed	99.04
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.04
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.03
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.03
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.03
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.02
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.02
PRK00007	693	elongation factor G; Reviewed	99.02
PLN03126	478	Elongation factor Tu; Provisional	99.01
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.01
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.99
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.99
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.98
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.97
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.97
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.96
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.96
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.96
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.96
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.95
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.95
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.95
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.94
COG1163	365	DRG Predicted GTPase [General function prediction	98.94
COG2229	187	Predicted GTPase [General function prediction only	98.94
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	98.94
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	98.94
KOG0090	238	consensus Signal recognition particle receptor, be	98.94
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.93
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.92
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.92
PTZ00141	446	elongation factor 1- alpha; Provisional	98.91
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.9
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.9
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.88
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.88
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.85
PTZ00416	836	elongation factor 2; Provisional	98.84
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.84
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	98.83
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.83
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.83
PRK10867	433	signal recognition particle protein; Provisional	98.82
KOG1145	683	consensus Mitochondrial translation initiation fac	98.82
PRK13351	687	elongation factor G; Reviewed	98.82
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.81
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	98.8
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.8
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.79
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.79
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.78
TIGR00959	428	ffh signal recognition particle protein. This mode	98.77
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.77
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.77
PRK09601	364	GTP-binding protein YchF; Reviewed	98.75
COG3596	296	Predicted GTPase [General function prediction only	98.74
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.72
PRK12740	668	elongation factor G; Reviewed	98.72
PTZ00258	390	GTP-binding protein; Provisional	98.71
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.7
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.7
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	98.69
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.69
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	98.66
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.65
PLN00043	447	elongation factor 1-alpha; Provisional	98.65
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	98.64
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.64
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.64
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.64
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.64
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	98.63
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	98.63
COG1100	219	GTPase SAR1 and related small G proteins [General	98.61
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.61
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.6
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.6
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.58
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.56
KOG0394	210	consensus Ras-related GTPase [General function pre	98.56
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.56
PRK07560	731	elongation factor EF-2; Reviewed	98.54
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.53
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.53
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.53
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.51
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	98.51
cd03110	179	Fer4_NifH_child This protein family's function is	98.51
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.5
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.49
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.49
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.49
PLN00023	334	GTP-binding protein; Provisional	98.47
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.46
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	98.46
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.45
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.44
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	98.43
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.41
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.39
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.39
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	98.39
COG1161	322	Predicted GTPases [General function prediction onl	98.38
KOG2486	320	consensus Predicted GTPase [General function predi	98.38
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	98.37
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.37
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.37
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	98.36
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.36
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	98.35
PRK14845	1049	translation initiation factor IF-2; Provisional	98.34
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.33
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.33
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	98.31
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	98.29
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.28
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.27
COG2403	449	Predicted GTPase [General function prediction only	98.27
PRK09602	396	translation-associated GTPase; Reviewed	98.24
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	98.23
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.23
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.21
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.2
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.2
PTZ00099	176	rab6; Provisional	98.19
PRK13796	365	GTPase YqeH; Provisional	98.19
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.19
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.18
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.17
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	98.14
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.14
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	98.13
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.11
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	98.08
PRK12289	352	GTPase RsgA; Reviewed	98.08
PRK12288	347	GTPase RsgA; Reviewed	98.06
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	98.05
COG1162	301	Predicted GTPases [General function prediction onl	98.05
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.04
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.04
KOG0781	587	consensus Signal recognition particle receptor, al	98.02
cd02034	116	CooC The accessory protein CooC, which contains a	97.97
COG0012	372	Predicted GTPase, probable translation factor [Tra	97.96
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.96
cd02036	179	MinD Bacterial cell division requires the formatio	97.95
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	97.94
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	97.94
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.93
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.93
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.92
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	97.91
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	97.9
KOG4252	246	consensus GTP-binding protein [Signal transduction	97.87
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.86
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.85
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.84
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.84
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.84
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	97.82
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.81
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.81
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.79
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	97.77
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.75
PRK04296	190	thymidine kinase; Provisional	97.7
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.7
cd02032	267	Bchl_like This family of proteins contains bchL an	97.68
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.68
CHL00175	281	minD septum-site determining protein; Validated	97.67
PRK00098	298	GTPase RsgA; Reviewed	97.67
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	97.65
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.65
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.65
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.64
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	97.64
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	97.63
KOG0395	196	consensus Ras-related GTPase [General function pre	97.63
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.62
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	97.62
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.62
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.61
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	97.61
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	97.61
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.6
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	97.6
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.59
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.59
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.58
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	97.58
cd03111	106	CpaE_like This protein family consists of proteins	97.58
cd02117	212	NifH_like This family contains the NifH (iron prot	97.58
cd03116	159	MobB Molybdenum is an essential trace element in t	97.57
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.56
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.53
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.53
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	97.52
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	97.52
CHL00072	290	chlL photochlorophyllide reductase subunit L	97.52
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.52
PRK05480	209	uridine/cytidine kinase; Provisional	97.5
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.49
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.49
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	97.49
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.48
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	97.48
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	97.47
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.46
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	97.45
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	97.45
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	97.45
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.44
KOG3883	198	consensus Ras family small GTPase [Signal transduc	97.43
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.43
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.42
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.42
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	97.42
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.41
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.4
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	97.4
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.4
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.39
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	97.39
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.39
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.39
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	97.39
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.38
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	97.38
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.38
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.38
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.36
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.36
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	97.35
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	97.35
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.35
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	97.35
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.35
PRK13537	306	nodulation ABC transporter NodI; Provisional	97.35
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.34
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.34
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.34
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	97.34
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.34
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.33
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.33
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.33
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.33
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.33
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.33
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.33
PRK13536	340	nodulation factor exporter subunit NodI; Provision	97.33
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.32
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.32
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.32
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.32
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.32
PRK01889	356	GTPase RsgA; Reviewed	97.32
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.32
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	97.31
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.31
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.31
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.31
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.31
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.31
PF13479	213	AAA_24: AAA domain	97.31
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.31
PRK13849	231	putative crown gall tumor protein VirC1; Provision	97.31
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.31
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.3
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.3
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.3
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.3
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.3
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.29
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.29
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.29
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	97.29
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	97.29
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	97.29
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.29
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.28
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.28
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.28

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=100.00  E-value=7.9e-49  Score=334.12  Aligned_cols=263  Identities=49%  Similarity=0.775  Sum_probs=236.4

Q ss_pred             cccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeecc
Q 022736           24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV  103 (293)
Q Consensus        24 ~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~  103 (293)
                      .+.....|+|+.+|+||+|||||||+|+++...+|+++||+.|+||....+++.++.+...+-.+++.++|+|||+||++
T Consensus        49 ~~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtV  128 (391)
T KOG2743|consen   49 TKSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTV  128 (391)
T ss_pred             cccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEe
Confidence            34555779999999999999999999999999999999999999999889999999887777788999999999999999


Q ss_pred             chhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736          104 KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH  183 (293)
Q Consensus       104 ~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~  183 (293)
                      +++.+.+++.++.++++||+|++||+|+++|+++...||.+..+.+..++|+||+|||+.+....++.......+.++..
T Consensus       129 k~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~  208 (391)
T KOG2743|consen  129 KDNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATR  208 (391)
T ss_pred             cchHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888877666566778999


Q ss_pred             HHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCC
Q 022736          184 QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSS  263 (293)
Q Consensus       184 qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~  263 (293)
                      |+.+||.|++||+|+++++    .+..+++.++.+|..|+++++.+++++...++.+.||+-+.-..+...++..  .+.
T Consensus       209 QiA~AD~II~NKtDli~~e----~~~~l~q~I~~INslA~m~~Tky~~vdlsnvLdi~ayds~ss~nl~~k~~~~--~~~  282 (391)
T KOG2743|consen  209 QIALADRIIMNKTDLVSEE----EVKKLRQRIRSINSLAQMIETKYSRVDLSNVLDIHAFDSESSINLDKKLQHS--GGT  282 (391)
T ss_pred             HHhhhheeeeccccccCHH----HHHHHHHHHHHhhhHHHhhhhhhccccHHHhcccccccccccchhhhhhccC--CCC
Confidence            9999999999999999975    5799999999999999999999999999999999999987444443333322  233


Q ss_pred             CCCCCCCEEEEEEecCCCCCHHHHHHhhh
Q 022736          264 QNLHDNNVRTLSICEPLAVNLDKVILQIA  292 (293)
Q Consensus       264 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  292 (293)
                      +.+|+.++.++.+..+...+.+.+..||+
T Consensus       283 ~~h~d~~i~ti~~~~~~~~~~E~~n~wl~  311 (391)
T KOG2743|consen  283 QIHLDQSIGTITFEVPGLAKEEHLNMWLQ  311 (391)
T ss_pred             CcccCCCcceEEEEeCCccCHHHHHHHHH
Confidence            44568899999999999999999999985

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=100.00  E-value=1.1e-47  Score=342.29  Aligned_cols=243  Identities=41%  Similarity=0.681  Sum_probs=206.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccch-hhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~-~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +||++|+||+|||||||+|+|++...|+|+||++||+|+ +++|. ..+....     ++++|++|||||||+++++.+.
T Consensus         1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGE-vgID~~~~l~~~~-----e~~~El~nGCICCT~r~dl~~~   74 (323)
T COG0523           1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGE-VGIDGGALLSDTG-----EEVVELTNGCICCTVRDDLLPA   74 (323)
T ss_pred             CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCcc-ccccCCCccccCC-----ccEEEeCCceEEEeccchhHHH
Confidence            699999999999999999999998889999999999998 99995 6665532     4689999999999999999999


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                      +.+|....+.+|+++|||+|+++|.++.++++..+.+.....+|.+|+|||+.++.......     ...+..|+++||+
T Consensus        75 ~~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~-----~~~~~~Qia~AD~  149 (323)
T COG0523          75 LERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAI-----AELAEDQLAFADV  149 (323)
T ss_pred             HHHHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHH-----HHHHHHHHHhCcE
Confidence            99999866779999999999999999999998777888999999999999999998876531     2456799999999


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhcc-C-CCCCCCC
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY-K-SSQNLHD  268 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~-~-~~~~~~~  268 (293)
                      |++||+|+++++    .++.+++.++++||.|+++...++..+...++....++...   ...+...+.. . +.+.+|+
T Consensus       150 ivlNK~Dlv~~~----~l~~l~~~l~~lnp~A~i~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~~h~h~~~~  222 (323)
T COG0523         150 IVLNKTDLVDAE----ELEALEARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDR---DVGRTSPLFSDHQHDHEHDE  222 (323)
T ss_pred             EEEecccCCCHH----HHHHHHHHHHHhCCCCeEEEccccCCCHHHhhccccccccc---cccccCccccccCCCchhcc
Confidence            999999999976    47999999999999999999999999888888888877554   2222222211 1 2222333


Q ss_pred             CCEEEEEEecCCCCCHHHHHHhhh
Q 022736          269 NNVRTLSICEPLAVNLDKVILQIA  292 (293)
Q Consensus       269 ~~~~~~~~~~~~p~~~~~~~~~l~  292 (293)
                      ++++++++..++|++|++|.+||.
T Consensus       223 ~~i~s~~~~~~~p~~~~~l~~~l~  246 (323)
T COG0523         223 GGISSFSVRADRPFDPERLEAFLD  246 (323)
T ss_pred             cCceEEEEecCCCCCHHHHHHHHH
Confidence            469999999999999999999985

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=100.00  E-value=3.5e-44  Score=321.36  Aligned_cols=241  Identities=31%  Similarity=0.509  Sum_probs=198.7

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      +.++||++|+||+|||||||+|++++...+.+++|+.||+|+ +++|..++....     .+++++.|||+||++++++.
T Consensus         1 ~~~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~-v~iD~~ll~~~~-----~~v~eL~~GCiCCs~~~~l~   74 (318)
T PRK11537          1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELE   74 (318)
T ss_pred             CCccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCC-ccccHHHHhCcC-----ceEEEECCCEEEEccCchHH
Confidence            347999999999999999999999988778999999999997 899998886522     35789999999999999999


Q ss_pred             HHHHHHHhhc----CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          109 QALEQLVQRK----ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       109 ~~l~~l~~~~----~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                      .++.+++...    .++|+|+|||+|+++|.++.+.++.++.+....+++.+|+|||+.++...++.      ......|
T Consensus        75 ~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~------~~~~~~Q  148 (318)
T PRK11537         75 DALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQ  148 (318)
T ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc------cHHHHHH
Confidence            9999997531    26999999999999999999988767778888999999999999988776543      3456799


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCC
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQ  264 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~  264 (293)
                      +++||+||+||+|++++.      +++++.++.+||.|+++.+.++.++...++.+..+........     .....+.+
T Consensus       149 i~~AD~IvlnK~Dl~~~~------~~~~~~l~~lnp~a~i~~~~~~~v~~~~l~~~~~~~~~~~~~~-----~~~~~~~~  217 (318)
T PRK11537        149 VGYADRILLTKTDVAGEA------EKLRERLARINARAPVYTVVHGDIDLSLLFNTNGFMLEENVVS-----TKPRFHFI  217 (318)
T ss_pred             HHhCCEEEEeccccCCHH------HHHHHHHHHhCCCCEEEEeccCCCCHHHHhCCCCcCccccccc-----cCcccccC
Confidence            999999999999999742      6899999999999999999999998888876654432111000     00001112


Q ss_pred             CCCCCCEEEEEEecCCCCCHHHHHHhhh
Q 022736          265 NLHDNNVRTLSICEPLAVNLDKVILQIA  292 (293)
Q Consensus       265 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~  292 (293)
                      ++|++++.+++++.++|++|++|..||+
T Consensus       218 ~~~~~~i~s~~~~~~~p~~~~~l~~~L~  245 (318)
T PRK11537        218 ADKQNDISSIVVELDYPVDISEVSRVME  245 (318)
T ss_pred             CcccCceEEEEEEcCCCCCHHHHHHHHH
Confidence            2456789999999999999999999985

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=100.00  E-value=1.2e-42  Score=314.53  Aligned_cols=255  Identities=31%  Similarity=0.510  Sum_probs=198.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCC-CCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .++||++|+||+|||||||+|++++...+.+++++.||+|+ .++|..++.... .+...+++++++|||+||++++++.
T Consensus         2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~-~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~   80 (341)
T TIGR02475         2 AKIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGD-LGIDGEILKACGIEGCSEENIVELANGCICCTVADDFI   80 (341)
T ss_pred             CccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCcc-ccchHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence            46899999999999999999999988778999999999997 899999887522 1112346899999999999999999


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHh--------hhc-------
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--------KYR-------  173 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~--------~~~-------  173 (293)
                      .+|.+++....++|+|+|||+|+++|.++.+.+. .+.+....+++.||+|||+.++.....        ...       
T Consensus        81 ~~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~-~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (341)
T TIGR02475        81 PTMTKLLARRQRPDHILIETSGLALPKPLVQAFQ-WPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLD  159 (341)
T ss_pred             HHHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhc-CccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccc
Confidence            9999998655789999999999999999999874 355667789999999999997753211        000       


Q ss_pred             ccCC-chHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCC-CEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          174 HLSS-YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSL-AHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       174 ~~~~-~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~-a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      .... ...+..|+++||+|++||+|+++++    .++++++.|+.+||. ++++++.++.++...++.+..+........
T Consensus       160 ~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~----~l~~~~~~l~~~~~~~a~i~~~~~~~v~~~~ll~~~~~~~~~~~~~  235 (341)
T TIGR02475       160 HETPLEELFEDQLACADLVILNKADLLDAA----GLARVRAEIAAELPRAVKIVEASHGEVDARVLLGLGAAAEDDLDNR  235 (341)
T ss_pred             ccchHHHHHHHHHHhCCEEEEeccccCCHH----HHHHHHHHHHHhCCCCCEEEEcccCCCCHHHHhCCCCcChhhhhcC
Confidence            0000 1234699999999999999999875    578999999998885 699999999999988888754332221111


Q ss_pred             hhhhhhhccCCCCCCCCCCEEEEEEecCCCCCHHHHHHhhhC
Q 022736          252 EGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS  293 (293)
Q Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  293 (293)
                      ..+..   ...+++++++++++++++.++|+++++|+.||++
T Consensus       236 ~~~~~---~~~~~~~~~~~i~s~~~~~~~p~~~~~~~~~L~~  274 (341)
T TIGR02475       236 PSHHD---FEGGEEHDHDEFDSVVVDLGEVADPAALRQRLER  274 (341)
T ss_pred             ccccc---ccCCCCCCCCCEEEEEEEcCCCCCHHHHHHHHHh
Confidence            11110   0011233446799999999999999999999974

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=100.00  E-value=8.6e-36  Score=247.34  Aligned_cols=175  Identities=49%  Similarity=0.798  Sum_probs=141.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHH-ccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYIL-NGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll-~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      |+++|+||+|||||||+++++ ...++.+++++.||+|. .++|..++....     ..+.++.+||+||+.++++..++
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~-~~iD~~~l~~~~-----~~v~~l~~gcicc~~~~~~~~~l   74 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGE-VNIDAELLQEDG-----VPVVELNNGCICCTLRDDLVEAL   74 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTS-THHHHHHHHTTT------EEEEECTTTESS-TTS-HHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccc-cccchhhhcccc-----eEEEEecCCCcccccHHHHHHHH
Confidence            899999999999999999999 56779999999999997 899999987632     24789999999999999999999


Q ss_pred             HHHHhhc-CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          112 EQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       112 ~~l~~~~-~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                      .++.... .++|+||||++|+++|.++.  + ....+.....++.+|+|||+.++......      ...+..|++.||+
T Consensus        75 ~~l~~~~~~~~d~IiIE~sG~a~p~~l~--~-~~~~~~~~~~~~~iI~vVDa~~~~~~~~~------~~~~~~Qi~~ADv  145 (178)
T PF02492_consen   75 RRLLREYEERPDRIIIETSGLADPAPLI--L-QDPPLKEDFRLDSIITVVDATNFDELENI------PELLREQIAFADV  145 (178)
T ss_dssp             HHHCCCCHGC-SEEEEEEECSSGGGGHH--H-HSHHHHHHESESEEEEEEEGTTHGGHTTH------CHHHHHHHCT-SE
T ss_pred             HHHHHhcCCCcCEEEECCccccccchhh--h-ccccccccccccceeEEeccccccccccc------hhhhhhcchhcCE
Confidence            9998753 37999999999999999982  2 25667778899999999999988432221      3556799999999


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI  225 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~  225 (293)
                      +++||+|+++.++   .++++++.++++||.|+++
T Consensus       146 IvlnK~D~~~~~~---~i~~~~~~ir~lnp~a~Iv  177 (178)
T PF02492_consen  146 IVLNKIDLVSDEQ---KIERVREMIRELNPKAPIV  177 (178)
T ss_dssp             EEEE-GGGHHHH-----HHHHHHHHHHH-TTSEEE
T ss_pred             EEEeccccCChhh---HHHHHHHHHHHHCCCCEEe
Confidence            9999999998752   4689999999999999986

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03112 CobW_like The function of this protein family is unkown

Probab=99.97  E-value=3.8e-31  Score=215.17  Aligned_cols=154  Identities=51%  Similarity=0.873  Sum_probs=133.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      |+++++|++|||||||++++++...+.+++++.+++|+ .++|...+....     ..++++.+||+||++++++..++.
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~-~~~d~~~~~~~~-----~~v~~l~~GCiCC~~~~~l~~~l~   74 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGE-VGIDNQLVVDTD-----EEIIEMNNGCICCTVRGDLIRALL   74 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCc-cchhHHHHhCCC-----ceEEEeCCCEeEeeCchhHHHHHH
Confidence            78999999999999999999987668899999999997 888887776422     357899999999999999999996


Q ss_pred             HHHh----hcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          113 QLVQ----RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       113 ~l~~----~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                      +++.    ...++|+|+|||||+++|.++.+.++.+..+....+++.++++||+.++..+++.      ...+..|+++|
T Consensus        75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~------~~~~~~Qi~~a  148 (158)
T cd03112          75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQ------QTEAQSQIAFA  148 (158)
T ss_pred             HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhc------cHHHHHHHHHC
Confidence            5543    3468999999999999999999887777778888999999999999998887654      24567999999


Q ss_pred             CEEEEeCCCC
Q 022736          189 DVVILNKVDL  198 (293)
Q Consensus       189 ~iivlNK~D~  198 (293)
                      |++|+||+|+
T Consensus       149 d~ivlnk~dl  158 (158)
T cd03112         149 DRILLNKTDL  158 (158)
T ss_pred             CEEEEecccC
Confidence            9999999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG1159 Era GTPase [General function prediction only]

Probab=99.92  E-value=1e-25  Score=194.52  Aligned_cols=185  Identities=23%  Similarity=0.334  Sum_probs=137.5

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..++.+++|+|+||+|||||+|+|+    |+|++++++.+++    ++..+..                           
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~----G~KisIvS~k~QT----TR~~I~G---------------------------   47 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALV----GQKISIVSPKPQT----TRNRIRG---------------------------   47 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHh----cCceEeecCCcch----hhhheeE---------------------------
Confidence            4689999999999999999999999    9999999999997    4444332                           


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                            +...++.++||+||||++.|......++...+..+...+|.+++|||+.......+..     ..+.+.....+
T Consensus        48 ------I~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~-----il~~lk~~~~p  116 (298)
T COG1159          48 ------IVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEF-----ILEQLKKTKTP  116 (298)
T ss_pred             ------EEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHH-----HHHHHhhcCCC
Confidence                  1113567899999999999988888888888888899999999999998744433321     12222333459


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh-----ccCCC
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH-----QYKSS  263 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~-----~~~~~  263 (293)
                      .++++||+|+++++.   .+..+.+.++..             .++.+++++||.+|.+++.|.+.+.++     .+||.
T Consensus       117 vil~iNKID~~~~~~---~l~~~~~~~~~~-------------~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~  180 (298)
T COG1159         117 VILVVNKIDKVKPKT---VLLKLIAFLKKL-------------LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPE  180 (298)
T ss_pred             eEEEEEccccCCcHH---HHHHHHHHHHhh-------------CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCCh
Confidence            999999999998762   123444444333             356789999999999999998888653     34565


Q ss_pred             CCCCCCCEEEEE
Q 022736          264 QNLHDNNVRTLS  275 (293)
Q Consensus       264 ~~~~~~~~~~~~  275 (293)
                      ++.+|.+.+++.
T Consensus       181 d~itD~~~rf~~  192 (298)
T COG1159         181 DQITDRPERFLA  192 (298)
T ss_pred             hhccCChHHHHH
Confidence            565555544443

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.92  E-value=2.9e-25  Score=194.36  Aligned_cols=195  Identities=21%  Similarity=0.215  Sum_probs=147.6

Q ss_pred             ccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCc
Q 022736           19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANG   97 (293)
Q Consensus        19 ~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~g   97 (293)
                      ....+|..+.+.+..++.|+|+||||||||++++++. ....+++++.+|+++ .+ |..++....     ...+++++|
T Consensus        91 ~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t-~~-Da~rI~~~g-----~pvvqi~tG  163 (290)
T PRK10463         91 LAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQT-VN-DAARIRATG-----TPAIQVNTG  163 (290)
T ss_pred             HHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCc-HH-HHHHHHhcC-----CcEEEecCC
Confidence            4556677777889999999999999999999999986 345689999999997 44 777766422     246889999


Q ss_pred             ceeeccchhHHHHHHHHHhhcCCCCEEEEecCCC-CCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccC
Q 022736           98 CICCTVKHSLVQALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLS  176 (293)
Q Consensus        98 cicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~-~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~  176 (293)
                      |+||..+.++..++..|..  .+.+++|||+.|. ..|..+.        +....+    +++++...+.+      ...
T Consensus       164 ~~Chl~a~mv~~Al~~L~~--~~~d~liIEnvGnLvcPa~fd--------lge~~~----v~vlsV~eg~d------kpl  223 (290)
T PRK10463        164 KGCHLDAQMIADAAPRLPL--DDNGILFIENVGNLVCPASFD--------LGEKHK----VAVLSVTEGED------KPL  223 (290)
T ss_pred             CCCcCcHHHHHHHHHHHhh--cCCcEEEEECCCCccCCCccc--------hhhcee----EEEEECccccc------cch
Confidence            9999999999999998864  5679999999994 6775321        222223    24444443321      111


Q ss_pred             CchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          177 SYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       177 ~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +++   .|++.||++|+||+|+++...  ++++.+.+.++.+||.+             +++++|+++|+|+++|.+|+.
T Consensus       224 Kyp---~~f~~ADIVVLNKiDLl~~~~--~dle~~~~~lr~lnp~a-------------~I~~vSA~tGeGld~L~~~L~  285 (290)
T PRK10463        224 KYP---HMFAAASLMLLNKVDLLPYLN--FDVEKCIACAREVNPEI-------------EIILISATSGEGMDQWLNWLE  285 (290)
T ss_pred             hcc---chhhcCcEEEEEhHHcCcccH--HHHHHHHHHHHhhCCCC-------------cEEEEECCCCCCHHHHHHHHH
Confidence            234   557889999999999986422  46788889999999875             467899999999999999997


Q ss_pred             hh
Q 022736          257 EH  258 (293)
Q Consensus       257 ~~  258 (293)
                      +.
T Consensus       286 ~~  287 (290)
T PRK10463        286 TQ  287 (290)
T ss_pred             Hh
Confidence            53

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.91  E-value=4.5e-24  Score=181.33  Aligned_cols=192  Identities=19%  Similarity=0.258  Sum_probs=137.9

Q ss_pred             cCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee
Q 022736           22 SNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC  100 (293)
Q Consensus        22 ~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic  100 (293)
                      .++..+....+|+++|+|++|||||||++++++. ..+.+++++.++++.  ++|...+...+     ..++++.+||+|
T Consensus        12 ~~~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~--~~D~~~~~~~~-----~~~~~l~~gcic   84 (207)
T TIGR00073        12 KNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVIT--KFDAERLRKYG-----APAIQINTGKEC   84 (207)
T ss_pred             HHHHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--cccHHHHHHcC-----CcEEEEcCCCcc
Confidence            4556667778999999999999999999999986 445799999999974  56777665422     257899999999


Q ss_pred             eccchhHHHHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736          101 CTVKHSLVQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP  179 (293)
Q Consensus       101 c~~~~~l~~~l~~l~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~  179 (293)
                      |....++..++..+..  .++|+|||||+| +..+..+            .......+.|+|+........         
T Consensus        85 ~~~~~~~~~~l~~~~~--~~~d~IiIEt~G~l~~~~~~------------~~~~~~~i~Vvd~~~~d~~~~---------  141 (207)
T TIGR00073        85 HLDAHMVAHALEDLPL--DDIDLLFIENVGNLVCPADF------------DLGEHMRVVLLSVTEGDDKPL---------  141 (207)
T ss_pred             cCChHHHHHHHHHhcc--CCCCEEEEecCCCcCCCccc------------ccccCeEEEEEecCcccchhh---------
Confidence            9776666666665543  367999999999 4433211            011223357888865432211         


Q ss_pred             HHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       180 ~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ....+++.|+++++||+|+.+...  ....++.+.+++++|.             .+++.+|+++++|++++.+|+.++
T Consensus       142 ~~~~~~~~a~iiv~NK~Dl~~~~~--~~~~~~~~~l~~~~~~-------------~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       142 KYPGMFKEADLIVINKADLAEAVG--FDVEKMKADAKKINPE-------------AEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhHhHHhhCCEEEEEHHHccccch--hhHHHHHHHHHHhCCC-------------CCEEEEECCCCCCHHHHHHHHHHh
Confidence            122446789999999999986421  1356677778777764             356889999999999999998653

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.90  E-value=9.3e-23  Score=171.79  Aligned_cols=189  Identities=16%  Similarity=0.232  Sum_probs=135.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhc-cCcceeeccchhHH--
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL-ANGCICCTVKHSLV--  108 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l-~~gcicc~~~~~l~--  108 (293)
                      ..++|+|++|||||||++++++. ....+++++.++++.  ..+...+.... .+..+..+.+ .+||.||+.+.++.  
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~--~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~   78 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT--QEDAEFLVKNS-ALPPERILGVETGGCPHTAIREDASMN   78 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC--hhHHHHHHHcC-CCCcCceehhhcCCCccceeccCHHHH
Confidence            35789999999999999999986 445678999999985  33554443321 1111223333 79999999999984  


Q ss_pred             -HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          109 -QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       109 -~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                       .+|.++..+..++|+++|||+|..-    ...+  .+.     -.+.+|+|+|+.++.....         ....|+..
T Consensus        79 ~~~L~~l~~~~~~~D~iiIEt~G~~l----~~~~--~~~-----l~~~~i~vvD~~~~~~~~~---------~~~~qi~~  138 (199)
T TIGR00101        79 LEAVAEMEARFPPLEMVFIESGGDNL----SATF--SPE-----LADLTIFVIDVAAGDKIPR---------KGGPGITR  138 (199)
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCc----cccc--chh-----hhCcEEEEEEcchhhhhhh---------hhHhHhhh
Confidence             5556665444579999999999421    1111  111     1467899999987665321         12468999


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      ||++++||+|+.+...  ..++.+.+.++.+||.+             +++.+|+++|+|++++.+|+.++.
T Consensus       139 ad~~~~~k~d~~~~~~--~~~~~~~~~~~~~~~~~-------------~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       139 SDLLVINKIDLAPMVG--ADLGVMERDAKKMRGEK-------------PFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             ccEEEEEhhhcccccc--ccHHHHHHHHHHhCCCC-------------CEEEEECCCCCCHHHHHHHHHhhc
Confidence            9999999999985311  35788889999998864             457899999999999999997653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.82  E-value=1.6e-20  Score=151.00  Aligned_cols=152  Identities=22%  Similarity=0.257  Sum_probs=102.9

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+++|.||+|||||+|+|+    |.+ +.+.|.+|+|.......+.                                  
T Consensus         3 ialvG~PNvGKStLfN~Lt----g~~-~~v~n~pG~Tv~~~~g~~~----------------------------------   43 (156)
T PF02421_consen    3 IALVGNPNVGKSTLFNALT----GAK-QKVGNWPGTTVEKKEGIFK----------------------------------   43 (156)
T ss_dssp             EEEEESTTSSHHHHHHHHH----TTS-EEEEESTTSSSEEEEEEEE----------------------------------
T ss_pred             EEEECCCCCCHHHHHHHHH----CCC-ceecCCCCCCeeeeeEEEE----------------------------------
Confidence            7899999999999999999    777 5579999974432221111                                  


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHH--HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736          115 VQRKERLDHILLETTGLANPAPLA--SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI  192 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~--~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv  192 (293)
                         .++.++.+||+||+....+..  +... ..++ ...+.|.++.|+|++++...+.       ....+.+++.|.+++
T Consensus        44 ---~~~~~~~lvDlPG~ysl~~~s~ee~v~-~~~l-~~~~~D~ii~VvDa~~l~r~l~-------l~~ql~e~g~P~vvv  111 (156)
T PF02421_consen   44 ---LGDQQVELVDLPGIYSLSSKSEEERVA-RDYL-LSEKPDLIIVVVDATNLERNLY-------LTLQLLELGIPVVVV  111 (156)
T ss_dssp             ---ETTEEEEEEE----SSSSSSSHHHHHH-HHHH-HHTSSSEEEEEEEGGGHHHHHH-------HHHHHHHTTSSEEEE
T ss_pred             ---ecCceEEEEECCCcccCCCCCcHHHHH-HHHH-hhcCCCEEEEECCCCCHHHHHH-------HHHHHHHcCCCEEEE
Confidence               133568999999976643332  1111 1222 1357899999999998766543       234556778999999


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +||+|.+.......+.+.+.+.+.                  -+++++||.+++|+++|.+.+
T Consensus       112 lN~~D~a~~~g~~id~~~Ls~~Lg------------------~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  112 LNKMDEAERKGIEIDAEKLSERLG------------------VPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             EETHHHHHHTTEEE-HHHHHHHHT------------------S-EEEEBTTTTBTHHHHHHHH
T ss_pred             EeCHHHHHHcCCEECHHHHHHHhC------------------CCEEEEEeCCCcCHHHHHhhC
Confidence            999999877655455666666653                  357899999999999987653

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=1e-19  Score=165.66  Aligned_cols=160  Identities=23%  Similarity=0.249  Sum_probs=122.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      |+|+|+|+||+|||||+|+|+    +++.|+++..+|.    +++.+....                             
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~----g~r~AIV~D~pGv----TRDr~y~~~-----------------------------   46 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLT----GRRIAIVSDTPGV----TRDRIYGDA-----------------------------   46 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHh----CCeeeEeecCCCC----ccCCcccee-----------------------------
Confidence            899999999999999999999    9999999999996    555554310                             


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736          113 QLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV  191 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii  191 (293)
                          ...+..+.+|||+|+.... .-+...+...++....++|+++||||+..+.+..+..     ...++.....|.++
T Consensus        47 ----~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~-----ia~~Lr~~~kpviL  117 (444)
T COG1160          47 ----EWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEE-----IAKILRRSKKPVIL  117 (444)
T ss_pred             ----EEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCCEEE
Confidence                1345679999999988533 2233334456677788999999999999877766653     45666766789999


Q ss_pred             EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      |+||+|..+.++      . .   .           ....+.+.+++++||..|.|+++|.+.+.+..
T Consensus       118 vvNK~D~~~~e~------~-~---~-----------efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         118 VVNKIDNLKAEE------L-A---Y-----------EFYSLGFGEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             EEEcccCchhhh------h-H---H-----------HHHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence            999999874431      1 1   1           11225678999999999999999999887654

>PRK00089 era GTPase Era; Reviewed

Probab=99.80  E-value=7.8e-19  Score=156.84  Aligned_cols=168  Identities=24%  Similarity=0.362  Sum_probs=112.5

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..+..+|+|+|.+|||||||+|+|+    |.+++++++.++++.    ..+..                 +         
T Consensus         2 ~~~~g~V~iiG~pn~GKSTLin~L~----g~~~~~vs~~~~tt~----~~i~~-----------------i---------   47 (292)
T PRK00089          2 GFKSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTR----HRIRG-----------------I---------   47 (292)
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHh----CCceeecCCCCCccc----ccEEE-----------------E---------
Confidence            3578999999999999999999999    888999888887621    11110                 0         


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                            . ..++.+++++||||+.++.......+..........+|.+++|+|+.........     .+...+.+...+
T Consensus        48 ------~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~-----~i~~~l~~~~~p  115 (292)
T PRK00089         48 ------V-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDE-----FILEKLKKVKTP  115 (292)
T ss_pred             ------E-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHH-----HHHHHHhhcCCC
Confidence                  0 0134679999999998876555443334444555789999999999872221111     012223333568


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .++|+||+|+....      ..+...++.+...          .++.+++++|++++.|++++.+++.+.
T Consensus       116 vilVlNKiDl~~~~------~~l~~~~~~l~~~----------~~~~~i~~iSA~~~~gv~~L~~~L~~~  169 (292)
T PRK00089        116 VILVLNKIDLVKDK------EELLPLLEELSEL----------MDFAEIVPISALKGDNVDELLDVIAKY  169 (292)
T ss_pred             EEEEEECCcCCCCH------HHHHHHHHHHHhh----------CCCCeEEEecCCCCCCHHHHHHHHHHh
Confidence            99999999998432      2233333333221          123568899999999999999888654

>TIGR00436 era GTP-binding protein Era

Probab=99.79  E-value=8.5e-19  Score=154.85  Aligned_cols=161  Identities=20%  Similarity=0.227  Sum_probs=105.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      .++++|.+|||||||+|+|+    +.+++++++.++++..    .+..    +                           
T Consensus         2 ~V~liG~pnvGKSTLln~L~----~~~~~~vs~~~~TTr~----~i~~----i---------------------------   42 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLH----GQKISITSPKAQTTRN----RISG----I---------------------------   42 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHh----CCcEeecCCCCCcccC----cEEE----E---------------------------
Confidence            58899999999999999999    7888999998887322    1110    0                           


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEE
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL  193 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivl  193 (293)
                        ...++.+++|+||||+.++.......+..........+|.+++|+|++........      +...+.....+.++|+
T Consensus        43 --~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~------i~~~l~~~~~p~ilV~  114 (270)
T TIGR00436        43 --HTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEF------VLTKLQNLKRPVVLTR  114 (270)
T ss_pred             --EEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHH------HHHHHHhcCCCEEEEE
Confidence              00133568999999987753322222223334455689999999999865332111      2333444567889999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ||+|+.+..       .+...+..+...          ..+.+++++||++|.|+++|.+++.+.
T Consensus       115 NK~Dl~~~~-------~~~~~~~~~~~~----------~~~~~v~~iSA~~g~gi~~L~~~l~~~  162 (270)
T TIGR00436       115 NKLDNKFKD-------KLLPLIDKYAIL----------EDFKDIVPISALTGDNTSFLAAFIEVH  162 (270)
T ss_pred             ECeeCCCHH-------HHHHHHHHHHhh----------cCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            999997532       122222222110          123468999999999999999988653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK15494 era GTPase Era; Provisional

Probab=99.78  E-value=4.1e-19  Score=161.46  Aligned_cols=165  Identities=18%  Similarity=0.274  Sum_probs=108.8

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-++++|.+|+|||||+|+|+    +.++++++..+++|.......+.                             
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~----~~k~~ivs~k~~tTr~~~~~~~~-----------------------------   96 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRII----GEKLSIVTPKVQTTRSIITGIIT-----------------------------   96 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHh----CCceeeccCCCCCccCcEEEEEE-----------------------------
Confidence            344578999999999999999999    77888888888763221110000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                              .++.+++|+||||+.++.......+..........+|++++|+|+..........     +...+.+...+.
T Consensus        97 --------~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~-----il~~l~~~~~p~  163 (339)
T PRK15494         97 --------LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHN-----ILDKLRSLNIVP  163 (339)
T ss_pred             --------eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCE
Confidence                    1345689999999876543332222233334456899999999987543322210     222334445678


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ++|+||+|+.+.     ....+.+.++..++             ...++++||++|.|++++.+|+.+.
T Consensus       164 IlViNKiDl~~~-----~~~~~~~~l~~~~~-------------~~~i~~iSAktg~gv~eL~~~L~~~  214 (339)
T PRK15494        164 IFLLNKIDIESK-----YLNDIKAFLTENHP-------------DSLLFPISALSGKNIDGLLEYITSK  214 (339)
T ss_pred             EEEEEhhcCccc-----cHHHHHHHHHhcCC-------------CcEEEEEeccCccCHHHHHHHHHHh
Confidence            999999998643     23455555544332             2467899999999999999998753

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.78  E-value=3.7e-18  Score=153.37  Aligned_cols=193  Identities=17%  Similarity=0.192  Sum_probs=121.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhh------hc--CCCCcchhhhhhccCcce
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMI------NE--GEGGALVEEWVELANGCI   99 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~------~~--~~~~~~~~~~~~l~~gci   99 (293)
                      .+..+|.|+|++|||||||++.|...  ..+.+++++..|+++ ...+..++      ..  ...++    ++...++  
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s-~~~~gallgd~~r~~~~~~~~~~----~~r~~~~--  126 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS-TRTGGSILGDKTRMERLSRHPNA----FIRPSPS--  126 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc-cccchhhhchHhHHHhhcCCCCe----EEEecCC--
Confidence            45678999999999999999998764  458899999999986 33233332      21  11111    1222223  


Q ss_pred             eeccch---hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccC
Q 022736          100 CCTVKH---SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLS  176 (293)
Q Consensus       100 cc~~~~---~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~  176 (293)
                      ||.+.+   .+.+++.. +. ..++|++||||+|+.......           ...+|.+++++++........      
T Consensus       127 ~~~l~~~a~~~~~~~~~-~~-~~g~d~viieT~Gv~qs~~~i-----------~~~aD~vlvv~~p~~gd~iq~------  187 (332)
T PRK09435        127 SGTLGGVARKTRETMLL-CE-AAGYDVILVETVGVGQSETAV-----------AGMVDFFLLLQLPGAGDELQG------  187 (332)
T ss_pred             cccccchHHHHHHHHHH-Hh-ccCCCEEEEECCCCccchhHH-----------HHhCCEEEEEecCCchHHHHH------
Confidence            666653   23333332 22 468999999999988543221           134788888887544332211      


Q ss_pred             CchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          177 SYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       177 ~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                         ....+++.+|++|+||+|+++..........++..++..+|...      .  ...+++.+|+.+++|+++|.+++.
T Consensus       188 ---~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~------~--w~~pVi~vSA~~g~GIdeL~~~I~  256 (332)
T PRK09435        188 ---IKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDP------G--WQPPVLTCSALEGEGIDEIWQAIE  256 (332)
T ss_pred             ---HHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhccccccc------C--CCCCEEEEECCCCCCHHHHHHHHH
Confidence               11236788999999999998754322233444445544443221      0  014688999999999999999987


Q ss_pred             hhc
Q 022736          257 EHQ  259 (293)
Q Consensus       257 ~~~  259 (293)
                      ++.
T Consensus       257 ~~~  259 (332)
T PRK09435        257 DHR  259 (332)
T ss_pred             HHH
Confidence            653

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.77  E-value=1.1e-18  Score=142.34  Aligned_cols=185  Identities=23%  Similarity=0.268  Sum_probs=132.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +-.+.|.|++|||||||+.++++. ....+++||.+|.-+  .-|...+... .+   ...+....|-.|+--......+
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t--~~Da~~l~~~-~g---~~i~~v~TG~~CH~da~m~~~a   86 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT--KEDADRLRKL-PG---EPIIGVETGKGCHLDASMNLEA   86 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec--hhhHHHHHhC-CC---CeeEEeccCCccCCcHHHHHHH
Confidence            357899999999999999999986 345899999999875  3455555541 11   2334444554456445566778


Q ss_pred             HHHHHhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          111 LEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                      ++++..+....|++|||+.| +..+.+..        +..    ..-|+|+|...+...-...     ++.    +..+|
T Consensus        87 i~~l~~~~~~~Dll~iEs~GNL~~~~sp~--------L~d----~~~v~VidvteGe~~P~K~-----gP~----i~~aD  145 (202)
T COG0378          87 IEELVLDFPDLDLLFIESVGNLVCPFSPD--------LGD----HLRVVVIDVTEGEDIPRKG-----GPG----IFKAD  145 (202)
T ss_pred             HHHHhhcCCcCCEEEEecCcceecccCcc--------hhh----ceEEEEEECCCCCCCcccC-----CCc----eeEee
Confidence            88887765568999999999 66653222        111    1458888887654322110     232    34599


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ++|+||+|+++.-+  ++++.+.+..+++||.++             ++.+|++||+|++++.+|+...
T Consensus       146 llVInK~DLa~~v~--~dlevm~~da~~~np~~~-------------ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         146 LLVINKTDLAPYVG--ADLEVMARDAKEVNPEAP-------------IIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             EEEEehHHhHHHhC--ccHHHHHHHHHHhCCCCC-------------EEEEeCCCCcCHHHHHHHHHhh
Confidence            99999999998654  588999999999999864             4668999999999999998753

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=1.5e-17  Score=136.78  Aligned_cols=182  Identities=16%  Similarity=0.216  Sum_probs=125.8

Q ss_pred             ccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccC
Q 022736           17 TTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELAN   96 (293)
Q Consensus        17 ~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~   96 (293)
                      +..++......+....|-|+++|++|+|||||||+|++   .++.|-+++.||.|..+....+                 
T Consensus         9 f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~---~k~LArtSktPGrTq~iNff~~-----------------   68 (200)
T COG0218           9 FITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTN---QKNLARTSKTPGRTQLINFFEV-----------------   68 (200)
T ss_pred             EEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhC---CcceeecCCCCCccceeEEEEe-----------------
Confidence            44567777788888999999999999999999999993   2457999999997443332211                 


Q ss_pred             cceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCC---cHHHH--HhhhcchhhccccccccEEEEEcccchHHHHhh
Q 022736           97 GCICCTVKHSLVQALEQLVQRKERLDHILLETTGLAN---PAPLA--SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK  171 (293)
Q Consensus        97 gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~---~~~~~--~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~  171 (293)
                                             ...+.+||.||+.-   |....  +.-+...++.....+..++.++|+.+.....+.
T Consensus        69 -----------------------~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~  125 (200)
T COG0218          69 -----------------------DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR  125 (200)
T ss_pred             -----------------------cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH
Confidence                                   12378999999543   22221  223345677777789999999999998877665


Q ss_pred             hcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          172 YRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       172 ~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      .     ..+++.+.+.+.++++||+|.++..+....+..++..+..-.+. .           ..++..|+.++.|++++
T Consensus       126 e-----m~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~-~-----------~~~~~~ss~~k~Gi~~l  188 (200)
T COG0218         126 E-----MIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD-D-----------QWVVLFSSLKKKGIDEL  188 (200)
T ss_pred             H-----HHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc-c-----------ceEEEEecccccCHHHH
Confidence            3     57788888999999999999998764311222222222211111 0           11566788888999988


Q ss_pred             hhhhhhh
Q 022736          252 EGLLEEH  258 (293)
Q Consensus       252 ~~~l~~~  258 (293)
                      ...+.+.
T Consensus       189 ~~~i~~~  195 (200)
T COG0218         189 KAKILEW  195 (200)
T ss_pred             HHHHHHH
Confidence            8777543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.74  E-value=9.2e-18  Score=152.90  Aligned_cols=167  Identities=21%  Similarity=0.317  Sum_probs=124.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ..-++|+|.||+|||||+|+|+    ++.-+++++.+|+    +++.+..         ..                   
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~il----geeR~Iv~~~aGT----TRD~I~~---------~~-------------------  221 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAIL----GEERVIVSDIAGT----TRDSIDI---------EF-------------------  221 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhc----cCceEEecCCCCc----cccceee---------eE-------------------
Confidence            4457889999999999999999    7778999999997    3333221         00                   


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHH---hhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~---~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                           ..++-.|.+|||+|+-....+.+   .+...+.++...+++.+++|+|++......+..     ........+.+
T Consensus       222 -----e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-----ia~~i~~~g~~  291 (444)
T COG1160         222 -----ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-----IAGLIEEAGRG  291 (444)
T ss_pred             -----EECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-----HHHHHHHcCCC
Confidence                 12455789999999887666654   233445667778899999999999876655532     35566677889


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+||+||+|++..++  ..++.++..++...|.          +++.+++.+||.+|.+++.+.+.+.
T Consensus       292 ~vIvvNKWDl~~~~~--~~~~~~k~~i~~~l~~----------l~~a~i~~iSA~~~~~i~~l~~~i~  347 (444)
T COG1160         292 IVIVVNKWDLVEEDE--ATMEEFKKKLRRKLPF----------LDFAPIVFISALTGQGLDKLFEAIK  347 (444)
T ss_pred             eEEEEEccccCCchh--hHHHHHHHHHHHHhcc----------ccCCeEEEEEecCCCChHHHHHHHH
Confidence            999999999988632  3567777777765554          4668899999999999888876654

>cd04163 Era Era subfamily

Probab=99.73  E-value=4.2e-17  Score=131.96  Aligned_cols=165  Identities=23%  Similarity=0.340  Sum_probs=105.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +...++++|.+|||||||+|+++    +.+++++.+..+++    ......                 +           
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~----~~~~~~~~~~~~~~----~~~~~~-----------------~-----------   45 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTT----RNRIRG-----------------I-----------   45 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHh----CCceEeccCCCCce----eceEEE-----------------E-----------
Confidence            35679999999999999999999    67777776665531    100000                 0           


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                           ....+.+++++||||+..+..................+|.+++++|+.........     .....+.+.+.+.+
T Consensus        46 -----~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~-----~~~~~~~~~~~~~i  115 (168)
T cd04163          46 -----YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDE-----FILELLKKSKTPVI  115 (168)
T ss_pred             -----EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHH-----HHHHHHHHhCCCEE
Confidence                 00124578999999988776554333222233445678899999999875221111     02223344457899


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+||+|+....   .........+...++             ..+++.+|++++.+++++.+++.+
T Consensus       116 iv~nK~Dl~~~~---~~~~~~~~~~~~~~~-------------~~~~~~~s~~~~~~~~~l~~~l~~  166 (168)
T cd04163         116 LVLNKIDLVKDK---EDLLPLLEKLKELGP-------------FAEIFPISALKGENVDELLEEIVK  166 (168)
T ss_pred             EEEEchhccccH---HHHHHHHHHHHhccC-------------CCceEEEEeccCCChHHHHHHHHh
Confidence            999999998432   123444444443332             245788999999999999888754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.72  E-value=4e-18  Score=145.61  Aligned_cols=191  Identities=21%  Similarity=0.264  Sum_probs=107.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCcccc------chhhhhc--CCCCcchhhhhhccCcce
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAMINE--GEGGALVEEWVELANGCI   99 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~------d~~~~~~--~~~~~~~~~~~~l~~gci   99 (293)
                      .+..+|+|+|+||||||||+++|...  ..|++++|+.-||.+ ...      |+..+..  ...+++++.+..-.    
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS-p~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG----  101 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS-PFTGGALLGDRIRMQELSRDPGVFIRSMATRG----  101 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG-GCC---SS--GGGCHHHHTSTTEEEEEE---S----
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC-CCCCCcccccHHHhcCcCCCCCEEEeecCcCC----
Confidence            35779999999999999999999875  469999999999976 222      2222222  12333333222111    


Q ss_pred             eeccchhHHHHHHHH--HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC
Q 022736          100 CCTVKHSLVQALEQL--VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS  177 (293)
Q Consensus       100 cc~~~~~l~~~l~~l--~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~  177 (293)
                         ..+-+..+..+.  +....+||+|||||.|.....--..           .-+|.+++|+-+......     +   
T Consensus       102 ---~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~-----------~~aD~~v~v~~Pg~GD~i-----Q---  159 (266)
T PF03308_consen  102 ---SLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIA-----------DMADTVVLVLVPGLGDEI-----Q---  159 (266)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHH-----------TTSSEEEEEEESSTCCCC-----C---
T ss_pred             ---CCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHH-----------HhcCeEEEEecCCCccHH-----H---
Confidence               011222222221  1224689999999999886532221           235667777755433211     0   


Q ss_pred             chHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       178 ~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                       .....-++.+|++|+||+|+..++   .....++..++...+...     .   -..+++.+||.+++|+++|.+.+.+
T Consensus       160 -~~KaGimEiaDi~vVNKaD~~gA~---~~~~~l~~~l~l~~~~~~-----~---W~ppV~~tsA~~~~Gi~eL~~~i~~  227 (266)
T PF03308_consen  160 -AIKAGIMEIADIFVVNKADRPGAD---RTVRDLRSMLHLLRERED-----G---WRPPVLKTSALEGEGIDELWEAIDE  227 (266)
T ss_dssp             -TB-TTHHHH-SEEEEE--SHHHHH---HHHHHHHHHHHHCSTSCT-----S---B--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             -HHhhhhhhhccEEEEeCCChHHHH---HHHHHHHHHHhhcccccc-----C---CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence             011233577999999999966544   345555666654443210     0   0147889999999999999999877


Q ss_pred             hc
Q 022736          258 HQ  259 (293)
Q Consensus       258 ~~  259 (293)
                      +.
T Consensus       228 ~~  229 (266)
T PF03308_consen  228 HR  229 (266)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.70  E-value=8.9e-17  Score=139.03  Aligned_cols=193  Identities=21%  Similarity=0.238  Sum_probs=116.4

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhc--------CCCCcchhhhhhccCcce
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE--------GEGGALVEEWVELANGCI   99 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~--------~~~~~~~~~~~~l~~gci   99 (293)
                      .+.++++|+|+||||||||+.+|...  ..|++|+|+.-||++ ...-..++.+        ...+++++.+-   +.. 
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS-p~TGGsiLGDRiRM~~~~~~~~vFiRs~~---srG-  123 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS-PFTGGSILGDRIRMQRLAVDPGVFIRSSP---SRG-  123 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC-CCCCccccccHhhHHhhccCCCeEEeecC---CCc-
Confidence            46779999999999999999999885  679999999999987 2222222222        01222222111   000 


Q ss_pred             eeccchhHHHHHHHH--HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC
Q 022736          100 CCTVKHSLVQALEQL--VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS  177 (293)
Q Consensus       100 cc~~~~~l~~~l~~l--~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~  177 (293)
                         ..+-+..+..+.  +....++|+|||||.|......-..           .-+|.+++|.=+..+.+..        
T Consensus       124 ---~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-----------~~aDt~~~v~~pg~GD~~Q--------  181 (323)
T COG1703         124 ---TLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-----------NMADTFLVVMIPGAGDDLQ--------  181 (323)
T ss_pred             ---cchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-----------hhcceEEEEecCCCCcHHH--------
Confidence               111222222222  1224689999999999887532221           2345556655444332211        


Q ss_pred             chHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       178 ~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                       ......++.+|++|+||.|.-.++   .....+...|+...   ......-+   ..+++.+||.+|+|+++|++.+.+
T Consensus       182 -~iK~GimEiaDi~vINKaD~~~A~---~a~r~l~~al~~~~---~~~~~~~W---~ppv~~t~A~~g~Gi~~L~~ai~~  251 (323)
T COG1703         182 -GIKAGIMEIADIIVINKADRKGAE---KAARELRSALDLLR---EVWRENGW---RPPVVTTSALEGEGIDELWDAIED  251 (323)
T ss_pred             -HHHhhhhhhhheeeEeccChhhHH---HHHHHHHHHHHhhc---ccccccCC---CCceeEeeeccCCCHHHHHHHHHH
Confidence             112244688999999999965543   34455555565442   01111111   256889999999999999999987


Q ss_pred             hc
Q 022736          258 HQ  259 (293)
Q Consensus       258 ~~  259 (293)
                      +.
T Consensus       252 h~  253 (323)
T COG1703         252 HR  253 (323)
T ss_pred             HH
Confidence            65

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.68  E-value=1.4e-16  Score=132.03  Aligned_cols=169  Identities=16%  Similarity=0.183  Sum_probs=101.8

Q ss_pred             cccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCccccchhhhhcCCCCcchhhhhhccC
Q 022736           18 THEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELAN   96 (293)
Q Consensus        18 ~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~-vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~   96 (293)
                      -++.-+..+....+.+-++|+|.+|+|||||+|+|..    .+ ++.+...+|++..+...                   
T Consensus         4 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~----~~~~~~~~~~~~~t~~~~~~-------------------   60 (179)
T TIGR03598         4 VKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTN----RKKLARTSKTPGRTQLINFF-------------------   60 (179)
T ss_pred             EeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhC----CCCcccccCCCCcceEEEEE-------------------
Confidence            3566677778888899999999999999999999994    32 34444444432111100                   


Q ss_pred             cceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcH------HHHHhhhcchhhccccccccEEEEEcccchHHHHh
Q 022736           97 GCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA------PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID  170 (293)
Q Consensus        97 gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~------~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~  170 (293)
                                           ..+.++.++||||+....      ...... ...++.....++.+++|+|+........
T Consensus        61 ---------------------~~~~~~~liDtpG~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ii~vvd~~~~~~~~~  118 (179)
T TIGR03598        61 ---------------------EVNDGFRLVDLPGYGYAKVSKEEKEKWQKL-IEEYLEKRENLKGVVLLMDIRHPLKELD  118 (179)
T ss_pred             ---------------------EeCCcEEEEeCCCCccccCChhHHHHHHHH-HHHHHHhChhhcEEEEEecCCCCCCHHH
Confidence                                 001257899999975431      111111 1223333345678999999976433322


Q ss_pred             hhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736          171 KYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT  249 (293)
Q Consensus       171 ~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~  249 (293)
                      ..     ....+.+...+.++++||+|+.++.+......++++.++...             ....++++||++|+|++
T Consensus       119 ~~-----~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~-------------~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       119 LE-----MLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA-------------DDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HH-----HHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc-------------CCCceEEEECCCCCCCC
Confidence            11     123344456789999999999865432223344444444321             11368999999999863

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.68  E-value=9.9e-17  Score=147.90  Aligned_cols=163  Identities=17%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      -|+|+|+||||||||+|+|+    +.++ .+++.+++|.....-.+..                                
T Consensus       161 dValVG~PNaGKSTLln~Lt----~~k~-~vs~~p~TT~~p~~Giv~~--------------------------------  203 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVS----AAKP-KVADYPFTTLVPNLGVVRV--------------------------------  203 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHh----CCcc-cccCCCCCccCcEEEEEEe--------------------------------
Confidence            59999999999999999999    4454 6777777643322211111                                


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHH-----Hh
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ-----IA  186 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q-----i~  186 (293)
                          .+...++|+||||+.++......+ ....+.+..+++.+++|+|+..+.  ........   +...+.+     ..
T Consensus       204 ----~~~~~i~~vDtPGi~~~a~~~~~L-g~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~---l~~eL~~~~~~L~~  275 (390)
T PRK12298        204 ----DDERSFVVADIPGLIEGASEGAGL-GIRFLKHLERCRVLLHLIDIAPIDGSDPVENARI---IINELEKYSPKLAE  275 (390)
T ss_pred             ----CCCcEEEEEeCCCccccccchhhH-HHHHHHHHHhCCEEEEEeccCcccccChHHHHHH---HHHHHHhhhhhhcC
Confidence                112248999999988754321111 122345667899999999987321  11111000   1111111     24


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .|.++|+||+|+.+..+    +.+..+.+....+.            ...++++||+++++++++.+++.+
T Consensus       276 kP~IlVlNKiDl~~~~e----l~~~l~~l~~~~~~------------~~~Vi~ISA~tg~GIdeLl~~I~~  330 (390)
T PRK12298        276 KPRWLVFNKIDLLDEEE----AEERAKAIVEALGW------------EGPVYLISAASGLGVKELCWDLMT  330 (390)
T ss_pred             CCEEEEEeCCccCChHH----HHHHHHHHHHHhCC------------CCCEEEEECCCCcCHHHHHHHHHH
Confidence            68899999999976432    22222222221110            024789999999999998887754

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.67  E-value=3e-16  Score=135.52  Aligned_cols=181  Identities=19%  Similarity=0.229  Sum_probs=117.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..++--++++|.||+|||||.|.++    |+|++.++....+    ++..+                 -.+||       
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mi----g~kv~~vS~K~~T----Tr~~i-----------------lgi~t-------  116 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMI----GQKVSAVSRKVHT----TRHRI-----------------LGIIT-------  116 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhh----CCccccccccccc----eeeee-----------------eEEEe-------
Confidence            3567779999999999999999999    9999999988876    22111                 11333       


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHH----hhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLAS----VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~----~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                               .+..+++|.||||+..+.....    .-+.+....+...+|.|+.|+|+.+-..++...  .......+. 
T Consensus       117 ---------s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~ys-  184 (379)
T KOG1423|consen  117 ---------SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEYS-  184 (379)
T ss_pred             ---------cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHHh-
Confidence                     4567899999999776554432    112345556677899999999998522211100  000112222 


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHH------------h---hcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIH------------E---INSLAHVIRSVRCQVDLSEVLNCRAYDATHVT  249 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~------------~---lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~  249 (293)
                       ..+.++|+||+|......   .+-.+.+.|.            +   ..|...++...-+.-.+.++|.+||++|+|++
T Consensus       185 -~ips~lvmnkid~~k~k~---~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gik  260 (379)
T KOG1423|consen  185 -KIPSILVMNKIDKLKQKR---LLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIK  260 (379)
T ss_pred             -cCCceeeccchhcchhhh---HHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHH
Confidence             358999999999887653   2222222221            1   11222333333344457889999999999999


Q ss_pred             hhhhhhhh
Q 022736          250 RLEGLLEE  257 (293)
Q Consensus       250 ~l~~~l~~  257 (293)
                      ++.+||-.
T Consensus       261 dlkqyLms  268 (379)
T KOG1423|consen  261 DLKQYLMS  268 (379)
T ss_pred             HHHHHHHh
Confidence            99999854

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.66  E-value=1.4e-16  Score=145.51  Aligned_cols=155  Identities=23%  Similarity=0.294  Sum_probs=113.3

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++|+|.||+|||||+|+|+    ++..|||+.-+|+    +++.++.         .+.                     
T Consensus       220 vvIiG~PNvGKSSLLNaL~----~~d~AIVTdI~GT----TRDviee---------~i~---------------------  261 (454)
T COG0486         220 VVIIGRPNVGKSSLLNALL----GRDRAIVTDIAGT----TRDVIEE---------DIN---------------------  261 (454)
T ss_pred             EEEECCCCCcHHHHHHHHh----cCCceEecCCCCC----ccceEEE---------EEE---------------------
Confidence            4568999999999999999    7888999999998    5555543         111                     


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN  194 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN  194 (293)
                         -++..+.++||+|+-+.....+.+...+..+...++|.|++|+|++......+..     ..+ ...-..+.++|+|
T Consensus       262 ---i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-----~~~-~~~~~~~~i~v~N  332 (454)
T COG0486         262 ---LNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-----LIE-LLPKKKPIIVVLN  332 (454)
T ss_pred             ---ECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-----HHH-hcccCCCEEEEEe
Confidence               2456788999999999988888888888888889999999999998743222210     111 1122356799999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+|+.++...    ..+     ++.             +-..++.+|+++++|++.|.+.+.+.
T Consensus       333 K~DL~~~~~~----~~~-----~~~-------------~~~~~i~iSa~t~~Gl~~L~~~i~~~  374 (454)
T COG0486         333 KADLVSKIEL----ESE-----KLA-------------NGDAIISISAKTGEGLDALREAIKQL  374 (454)
T ss_pred             chhccccccc----chh-----hcc-------------CCCceEEEEecCccCHHHHHHHHHHH
Confidence            9999986521    111     000             11246889999999999999888654

>PRK13768 GTPase; Provisional

Probab=99.64  E-value=7.3e-16  Score=134.68  Aligned_cols=218  Identities=16%  Similarity=0.141  Sum_probs=115.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhh-----hhccCcceeecc-c
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW-----VELANGCICCTV-K  104 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~-----~~l~~gcicc~~-~  104 (293)
                      -+++++|++|+||||++..+...  ..|+++.++..|++.+ .++...-.+..+-+..+++     ...+++++.|.. .
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~-~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~   81 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE-YLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLL   81 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc-cCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHH
Confidence            47889999999999999988764  5689999999999852 2111000000000111111     112333444421 0


Q ss_pred             hhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736          105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA  181 (293)
Q Consensus       105 ~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~  181 (293)
                      ..-...+...+. ..+.+++++||||..++....   ..+. + .+.... .+.+++|+|+....+..+...........
T Consensus        82 ~~~~~~l~~~l~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~-~-~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~  157 (253)
T PRK13768         82 LTKADEIKEEIE-SLDADYVLVDTPGQMELFAFRESGRKLV-E-RLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV  157 (253)
T ss_pred             HHHHHHHHHHHH-hcCCCEEEEeCCcHHHHHhhhHHHHHHH-H-HHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence            111112222222 234699999999987754321   1111 1 111111 67899999997654443321100000011


Q ss_pred             HHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHh-------hcCCC----E----EEEeecCCCCchhhcccccCCcc
Q 022736          182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHE-------INSLA----H----VIRSVRCQVDLSEVLNCRAYDAT  246 (293)
Q Consensus       182 ~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~-------lnp~a----~----i~~~~~~~~~~~~i~~~sa~~~~  246 (293)
                      ..+...+.++|+||+|+++..+.    +.+.+.++.       +....    .    +.+..........++++|+.+++
T Consensus       158 ~~~~~~~~i~v~nK~D~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~  233 (253)
T PRK13768        158 QLRLGLPQIPVLNKADLLSEEEL----ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE  233 (253)
T ss_pred             HHHcCCCEEEEEEhHhhcCchhH----HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc
Confidence            12456789999999999876532    333332221       00000    0    00000000012367899999999


Q ss_pred             hhhhhhhhhhhhc
Q 022736          247 HVTRLEGLLEEHQ  259 (293)
Q Consensus       247 ~~~~l~~~l~~~~  259 (293)
                      |++++.+++.+..
T Consensus       234 gl~~L~~~I~~~l  246 (253)
T PRK13768        234 GFDELYAAIQEVF  246 (253)
T ss_pred             CHHHHHHHHHHHc
Confidence            9999999998754

>cd01894 EngA1 EngA1 subfamily

Probab=99.63  E-value=1.4e-15  Score=122.31  Aligned_cols=155  Identities=22%  Similarity=0.216  Sum_probs=95.6

Q ss_pred             EEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHHH
Q 022736           36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV  115 (293)
Q Consensus        36 ~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l~  115 (293)
                      +++|.+|+|||||+|+|+    +.+...+.+.++.+.......                      +              
T Consensus         1 ~l~G~~~~GKssl~~~l~----~~~~~~~~~~~~~t~~~~~~~----------------------~--------------   40 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLT----GRRDAIVEDTPGVTRDRIYGE----------------------A--------------   40 (157)
T ss_pred             CccCCCCCCHHHHHHHHh----CCcEEeecCCCCceeCceeEE----------------------E--------------
Confidence            478999999999999999    555566666555411100000                      0              


Q ss_pred             hhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeC
Q 022736          116 QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK  195 (293)
Q Consensus       116 ~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK  195 (293)
                       ...+.++.++||||+.+........+..........+|.+++|+|+.........     .+..++.+...+.++|+||
T Consensus        41 -~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-----~~~~~~~~~~~piiiv~nK  114 (157)
T cd01894          41 -EWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-----EIAKYLRKSKKPVILVVNK  114 (157)
T ss_pred             -EECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-----HHHHHHHhcCCCEEEEEEC
Confidence             0123568899999987754411111112223344678999999999753222111     1233445556789999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.+...       ....+..+              ....++.+|++++.|++++.+++.+
T Consensus       115 ~D~~~~~~-------~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (157)
T cd01894         115 VDNIKEED-------EAAEFYSL--------------GFGEPIPISAEHGRGIGDLLDAILE  155 (157)
T ss_pred             cccCChHH-------HHHHHHhc--------------CCCCeEEEecccCCCHHHHHHHHHh
Confidence            99986531       12222222              1235688999999999999888754

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.63  E-value=2.6e-16  Score=133.99  Aligned_cols=223  Identities=14%  Similarity=0.176  Sum_probs=120.0

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhh---c-cCcceeec
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE---L-ANGCICCT  102 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~---l-~~gcicc~  102 (293)
                      ..+.++++++|..|||||||+++|..+  ..+...=+|+.||.. .++....--+-++-+..+++..   | +||.|..+
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv-~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts   94 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAV-RNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS   94 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHH-hcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence            446778889999999999999999875  334446677777764 2222111001111122222221   1 57777655


Q ss_pred             cch---hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH--HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC
Q 022736          103 VKH---SLVQALEQLVQRKERLDHILLETTGLANPAPLA--SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS  177 (293)
Q Consensus       103 ~~~---~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~--~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~  177 (293)
                      +.-   .+...+.-+-++...+++++|||||..+-....  ..+. -..++..+. -+|+++||..+...+...++....
T Consensus        95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsII-te~lass~p-tvv~YvvDt~rs~~p~tFMSNMlY  172 (366)
T KOG1532|consen   95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSII-TETLASSFP-TVVVYVVDTPRSTSPTTFMSNMLY  172 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccch-HhhHhhcCC-eEEEEEecCCcCCCchhHHHHHHH
Confidence            432   222222222233456899999999965432111  1111 122333333 368999998754333222222122


Q ss_pred             chHHHHHHhccCEEEEeCCCCCCCCCC---cchHHHHHHHHHhhcCCCEEEEeecCCC--------CchhhcccccCCcc
Q 022736          178 YPEAIHQIAFADVVILNKVDLVSPERS---GDSLDELEKEIHEINSLAHVIRSVRCQV--------DLSEVLNCRAYDAT  246 (293)
Q Consensus       178 ~~~~~~qi~~a~iivlNK~D~~~~~~~---~~~~~~~~~~l~~lnp~a~i~~~~~~~~--------~~~~i~~~sa~~~~  246 (293)
                      +..++...+.|.++++||+|+.+.+-.   ..+.+.++..+...  ....+....+.+        ..-..+.+|+++|.
T Consensus       173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~--~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~  250 (366)
T KOG1532|consen  173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEA--ESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE  250 (366)
T ss_pred             HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhh--ccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence            344566778899999999999886521   12334444444431  111111100000        11234578999999


Q ss_pred             hhhhhhhhhh
Q 022736          247 HVTRLEGLLE  256 (293)
Q Consensus       247 ~~~~l~~~l~  256 (293)
                      |++++...+.
T Consensus       251 G~ddf~~av~  260 (366)
T KOG1532|consen  251 GFDDFFTAVD  260 (366)
T ss_pred             cHHHHHHHHH
Confidence            9988776553

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.62  E-value=1.5e-15  Score=137.43  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=96.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ++=|+|+|+||||||||+|+|..    .++. +.+.+++|.....-.+..                              
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~----a~~~-va~ypfTT~~p~~G~v~~------------------------------  202 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSA----AKPK-IADYPFTTLHPNLGVVRV------------------------------  202 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHc----CCCc-cCCCCCceeCceEEEEEe------------------------------
Confidence            34589999999999999999994    3333 455565533222111110                              


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHH-----
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ-----  184 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q-----  184 (293)
                            .+..+++++|+||+.+.......+ ...++.+..+++++++|+|++...  ..+..      +...+.+     
T Consensus       203 ------~~~~~~~i~D~PGli~ga~~~~gL-g~~flrhie~a~vlI~ViD~s~~~s~e~~~~------~~~EL~~~~~~L  269 (335)
T PRK12299        203 ------DDYKSFVIADIPGLIEGASEGAGL-GHRFLKHIERTRLLLHLVDIEAVDPVEDYKT------IRNELEKYSPEL  269 (335)
T ss_pred             ------CCCcEEEEEeCCCccCCCCccccH-HHHHHHHhhhcCEEEEEEcCCCCCCHHHHHH------HHHHHHHhhhhc
Confidence                  123458999999987543321111 123345556788999999997532  11111      1111111     


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ...+.++|+||+|+.+..+.  ....+....+..+               ..++++||++++|++++..++.+.
T Consensus       270 ~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~---------------~~i~~iSAktg~GI~eL~~~L~~~  326 (335)
T PRK12299        270 ADKPRILVLNKIDLLDEEEE--REKRAALELAALG---------------GPVFLISAVTGEGLDELLRALWEL  326 (335)
T ss_pred             ccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC---------------CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            24689999999999765421  1111111111110               357899999999999999988654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.62  E-value=1.7e-15  Score=119.36  Aligned_cols=103  Identities=18%  Similarity=0.283  Sum_probs=72.4

Q ss_pred             EEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCC
Q 022736          125 LLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPER  203 (293)
Q Consensus       125 iidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~  203 (293)
                      +||||| +.+...+...+     +....++|.|++|.|++.......        +........+.+-|+||+|+.+.+ 
T Consensus        40 ~IDTPGEyiE~~~~y~aL-----i~ta~dad~V~ll~dat~~~~~~p--------P~fa~~f~~pvIGVITK~Dl~~~~-  105 (143)
T PF10662_consen   40 TIDTPGEYIENPRFYHAL-----IVTAQDADVVLLLQDATEPRSVFP--------PGFASMFNKPVIGVITKIDLPSDD-  105 (143)
T ss_pred             EEECChhheeCHHHHHHH-----HHHHhhCCEEEEEecCCCCCccCC--------chhhcccCCCEEEEEECccCccch-
Confidence            699999 44443344333     345578999999999985432111        223334467899999999999433 


Q ss_pred             CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          204 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       204 ~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                        ..+++.++.|+..              ...++|.+|+.+|+|+++|.++|++
T Consensus       106 --~~i~~a~~~L~~a--------------G~~~if~vS~~~~eGi~eL~~~L~~  143 (143)
T PF10662_consen  106 --ANIERAKKWLKNA--------------GVKEIFEVSAVTGEGIEELKDYLEE  143 (143)
T ss_pred             --hhHHHHHHHHHHc--------------CCCCeEEEECCCCcCHHHHHHHHhC
Confidence              2567777777754              2357899999999999999999863

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01895 EngA2 EngA2 subfamily

Probab=99.62  E-value=3.7e-15  Score=121.58  Aligned_cols=167  Identities=23%  Similarity=0.283  Sum_probs=99.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      ..++++|.+|+|||||+|+|+.    .........++.+    ......         .                     
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~----~~~~~~~~~~~~~----~~~~~~---------~---------------------   44 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLG----EERVIVSDIAGTT----RDSIDV---------P---------------------   44 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhC----ccceeccCCCCCc----cCceee---------E---------------------
Confidence            4588999999999999999994    3333333333321    110000         0                     


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHH---hhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~---~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                        . ...+.++.+|||||+.+......   .+.....+......|.+++|+|+..........     ......+...+.
T Consensus        45 --~-~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~~~  116 (174)
T cd01895          45 --F-EYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-----IAGLILEEGKAL  116 (174)
T ss_pred             --E-EECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-----HHHHHHhcCCCE
Confidence              0 01335688999999876532211   111111223345788999999997654332210     122233346788


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ++++||+|+.+..+  ....++.+.+++..+..          ....++.+|+++++|++++..++..
T Consensus       117 iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895         117 VIVVNKWDLVEKDS--KTMKEFKKEIRRKLPFL----------DYAPIVFISALTGQGVDKLFDAIDE  172 (174)
T ss_pred             EEEEeccccCCccH--HHHHHHHHHHHhhcccc----------cCCceEEEeccCCCCHHHHHHHHHH
Confidence            99999999987531  13455556665543321          1246889999999999998877653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.61  E-value=6.1e-16  Score=133.67  Aligned_cols=209  Identities=19%  Similarity=0.201  Sum_probs=98.0

Q ss_pred             EEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhc-----cCcceeec--cc---
Q 022736           37 ITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL-----ANGCICCT--VK---  104 (293)
Q Consensus        37 i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l-----~~gcicc~--~~---  104 (293)
                      |+|++||||||+++++.+.  ..++++.+|+-||+.+ ......--+-++-+..+++.+-     +++-+.|-  +.   
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~-~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~   79 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE-NLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI   79 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S---SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc-ccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH
Confidence            6899999999999999874  5689999999999983 2221111111112222222222     33333441  12   


Q ss_pred             hhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhh-cchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736          105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW-LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH  183 (293)
Q Consensus       105 ~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~-~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~  183 (293)
                      +++.+.+...     ..+|+|+||||+.+......... .-..+....++ ++++++|+....+..............+-
T Consensus        80 d~l~~~i~~~-----~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~-~~v~LvD~~~~~~~~~f~s~~L~s~s~~~  153 (238)
T PF03029_consen   80 DWLDEEIEKY-----EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRL-VVVFLVDSSFCSDPSKFVSSLLLSLSIML  153 (238)
T ss_dssp             HHHHHHHHHH-----H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhc-----CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcce-EEEEEEecccccChhhHHHHHHHHHHHHh
Confidence            2334444332     23899999999876433332111 01122322333 68999999877654443322211223345


Q ss_pred             HHhccCEEEEeCCCCCCCCCCcchHHH------HHHHH----HhhcCC-CEEEEeecCCCCch-hhcccccCCcchhhhh
Q 022736          184 QIAFADVVILNKVDLVSPERSGDSLDE------LEKEI----HEINSL-AHVIRSVRCQVDLS-EVLNCRAYDATHVTRL  251 (293)
Q Consensus       184 qi~~a~iivlNK~D~~~~~~~~~~~~~------~~~~l----~~lnp~-a~i~~~~~~~~~~~-~i~~~sa~~~~~~~~l  251 (293)
                      +++.|.+.|+||+|+++.. ..+.++.      +...+    +.++.. +.++    ...... .++++|+.+++++++|
T Consensus       154 ~~~lP~vnvlsK~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l----~~~~~~~~f~pls~~~~~~~~~L  228 (238)
T PF03029_consen  154 RLELPHVNVLSKIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELL----DDFGLVIRFIPLSSKDGEGMEEL  228 (238)
T ss_dssp             HHTSEEEEEE--GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHC----CCCSSS---EE-BTTTTTTHHHH
T ss_pred             hCCCCEEEeeeccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH----hhcCCCceEEEEECCChHHHHHH
Confidence            6789999999999999732 1011111      11111    111100 0000    112223 6789999999999999


Q ss_pred             hhhhhh
Q 022736          252 EGLLEE  257 (293)
Q Consensus       252 ~~~l~~  257 (293)
                      ...+.+
T Consensus       229 ~~~id~  234 (238)
T PF03029_consen  229 LAAIDK  234 (238)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.60  E-value=6.5e-15  Score=122.20  Aligned_cols=184  Identities=18%  Similarity=0.133  Sum_probs=99.0

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++++|.+|||||||+|+|+............++..    .+......       .....+..++.++..           
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~-----------   59 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETF----LDVLKEER-------ERGITIKSGVATFEW-----------   59 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceeccc----ccCCHHHH-------HcCCCeecceEEEee-----------
Confidence            68899999999999999996532111111111100    00000000       001112222332221           


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN  194 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN  194 (293)
                          .+.+++|+||||..+......        .....+|.+++|+|+.........     .......+...+.++++|
T Consensus        60 ----~~~~~~liDtpG~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~i~iv~n  122 (189)
T cd00881          60 ----PDRRVNFIDTPGHEDFSSEVI--------RGLSVSDGAILVVDANEGVQPQTR-----EHLRIAREGGLPIIVAIN  122 (189)
T ss_pred             ----CCEEEEEEeCCCcHHHHHHHH--------HHHHhcCEEEEEEECCCCCcHHHH-----HHHHHHHHCCCCeEEEEE
Confidence                246789999999765433322        122468899999999764322211     012233445678999999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+|+.++.+.......+.+.++.+.....-.. ........+++++|+++|.|++++..++...
T Consensus       123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~  185 (189)
T cd00881         123 KIDRVGEEDLEEVLREIKELLGLIGFISTKEE-GTRNGLLVPIVPGSALTGIGVEELLEAIVEH  185 (189)
T ss_pred             CCCCcchhcHHHHHHHHHHHHccccccchhhh-hcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence            99998754322233344444443221000000 0001123568899999999999999888643

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.60  E-value=6.7e-15  Score=134.23  Aligned_cols=158  Identities=21%  Similarity=0.339  Sum_probs=99.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ...|.++++|.+|+|||||+|+|+    +.+ +++.+.+++|.......+             .+               
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~----~~~-~~v~~~~~tT~d~~~~~i-------------~~---------------  233 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALT----GAD-VYAADQLFATLDPTTRRL-------------DL---------------  233 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh----CCc-eeeccCCccccCCEEEEE-------------Ee---------------
Confidence            456889999999999999999999    444 455566665332221111             11               


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--
Q 022736          110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--  185 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--  185 (293)
                              .++..+.|+||+|+..  |....+.+  ...+.....+|.+++|+|++........ .   .+...+.++  
T Consensus       234 --------~~~~~i~l~DT~G~~~~l~~~lie~f--~~tle~~~~ADlil~VvD~s~~~~~~~~-~---~~~~~L~~l~~  299 (351)
T TIGR03156       234 --------PDGGEVLLTDTVGFIRDLPHELVAAF--RATLEEVREADLLLHVVDASDPDREEQI-E---AVEKVLEELGA  299 (351)
T ss_pred             --------CCCceEEEEecCcccccCCHHHHHHH--HHHHHHHHhCCEEEEEEECCCCchHHHH-H---HHHHHHHHhcc
Confidence                    1234688999999843  55554443  2344556789999999999764322110 0   012333444  


Q ss_pred             -hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 -~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                       ..+.++|+||+|+.+..       .+.. +..  .             ...++.+||++|.|+++|..++.+
T Consensus       300 ~~~piIlV~NK~Dl~~~~-------~v~~-~~~--~-------------~~~~i~iSAktg~GI~eL~~~I~~  349 (351)
T TIGR03156       300 EDIPQLLVYNKIDLLDEP-------RIER-LEE--G-------------YPEAVFVSAKTGEGLDLLLEAIAE  349 (351)
T ss_pred             CCCCEEEEEEeecCCChH-------hHHH-HHh--C-------------CCCEEEEEccCCCCHHHHHHHHHh
Confidence             35779999999997532       1111 110  0             123678999999999999888753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.59  E-value=2.2e-15  Score=141.61  Aligned_cols=165  Identities=22%  Similarity=0.214  Sum_probs=96.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +.-|+|+|+||||||||+|+|..    .+.. +.+.+++|.......+.                               
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~----akpk-IadypfTTl~P~lGvv~-------------------------------  202 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSA----AKPK-IADYPFTTLVPNLGVVQ-------------------------------  202 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhc----CCcc-ccccCcccccceEEEEE-------------------------------
Confidence            44589999999999999999994    3333 35666653222111110                               


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH------HHHhhh-cccCCchHH---
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL------FQIDKY-RHLSSYPEA---  181 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~------~~~~~~-~~~~~~~~~---  181 (293)
                            ..+..+.|+||||+.+.......+. ...+.+..+++.+++|||++...      ..+... ..+..+...   
T Consensus       203 ------~~~~~f~laDtPGliegas~g~gLg-~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~  275 (500)
T PRK12296        203 ------AGDTRFTVADVPGLIPGASEGKGLG-LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDG  275 (500)
T ss_pred             ------ECCeEEEEEECCCCccccchhhHHH-HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccc
Confidence                  1234689999999865433222111 22345567789999999997531      111110 000001000   


Q ss_pred             ----HHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          182 ----IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       182 ----~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                          ......|.+||+||+|+.+..+   ..+.+...+...              . ..++++|+++++|+++|..++.+
T Consensus       276 ~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~~~l~~~--------------g-~~Vf~ISA~tgeGLdEL~~~L~e  337 (500)
T PRK12296        276 DLGLGDLAERPRLVVLNKIDVPDARE---LAEFVRPELEAR--------------G-WPVFEVSAASREGLRELSFALAE  337 (500)
T ss_pred             cchhhhhcCCCEEEEEECccchhhHH---HHHHHHHHHHHc--------------C-CeEEEEECCCCCCHHHHHHHHHH
Confidence                0112578999999999975431   122223233221              0 24789999999999999888754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.59  E-value=4.7e-15  Score=140.78  Aligned_cols=160  Identities=23%  Similarity=0.220  Sum_probs=99.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      .+|.|+|+|.+|+|||||+|+|+    +.+.+++...+|.    ++..+...         .                  
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~----~~~~~~v~~~~gv----T~d~~~~~---------~------------------   81 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRIL----GRREAVVEDVPGV----TRDRVSYD---------A------------------   81 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHh----CcCcccccCCCCC----CEeeEEEE---------E------------------
Confidence            45889999999999999999999    5556677777764    22221110         0                  


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          111 LEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                            ...+..+.++||||+... ..+...+ ..........+|++++|+|+.......+..     +...+.....|.
T Consensus        82 ------~~~~~~~~l~DT~G~~~~~~~~~~~~-~~~~~~~~~~aD~il~VvD~~~~~s~~~~~-----i~~~l~~~~~pi  149 (472)
T PRK03003         82 ------EWNGRRFTVVDTGGWEPDAKGLQASV-AEQAEVAMRTADAVLFVVDATVGATATDEA-----VARVLRRSGKPV  149 (472)
T ss_pred             ------EECCcEEEEEeCCCcCCcchhHHHHH-HHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCE
Confidence                  013345889999997632 2222111 112223345789999999998654332211     233444556789


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ++|+||+|+.....      .... ...              ..+...+++||++|.|++++.+++.+.
T Consensus       150 ilV~NK~Dl~~~~~------~~~~-~~~--------------~g~~~~~~iSA~~g~gi~eL~~~i~~~  197 (472)
T PRK03003        150 ILAANKVDDERGEA------DAAA-LWS--------------LGLGEPHPVSALHGRGVGDLLDAVLAA  197 (472)
T ss_pred             EEEEECccCCccch------hhHH-HHh--------------cCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence            99999999864321      1111 111              122345789999999999998887643

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.58  E-value=7e-15  Score=138.20  Aligned_cols=157  Identities=21%  Similarity=0.185  Sum_probs=101.8

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+++|.+|+|||||+|+|+    +.+.+++...+|.+    ++....         ..                      
T Consensus         2 i~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~t----~d~~~~---------~~----------------------   42 (429)
T TIGR03594         2 VAIVGRPNVGKSTLFNRLT----GKRDAIVSDTPGVT----RDRKYG---------DA----------------------   42 (429)
T ss_pred             EEEECCCCCCHHHHHHHHh----CCCcceecCCCCcc----cCceEE---------EE----------------------
Confidence            7899999999999999999    56667777777752    211111         00                      


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN  194 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN  194 (293)
                        ...+..+.++||||+..........+..........+|.+++|+|+.......+..     +..++++...+.++|+|
T Consensus        43 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~-----i~~~l~~~~~piilVvN  115 (429)
T TIGR03594        43 --EWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEE-----IAKWLRKSGKPVILVAN  115 (429)
T ss_pred             --EECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHhCCCEEEEEE
Confidence              01334588999999754322222222222334446789999999998654333321     34455666788999999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+|+.+.+.   ....    ...              +.+.+++.+||.+|.|++++.+++...
T Consensus       116 K~D~~~~~~---~~~~----~~~--------------lg~~~~~~vSa~~g~gv~~ll~~i~~~  158 (429)
T TIGR03594       116 KIDGKKEDA---VAAE----FYS--------------LGFGEPIPISAEHGRGIGDLLDAILEL  158 (429)
T ss_pred             CccCCcccc---cHHH----HHh--------------cCCCCeEEEeCCcCCChHHHHHHHHHh
Confidence            999876542   1111    111              234568899999999999998887644

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01898 Obg Obg subfamily

Probab=99.58  E-value=1.4e-14  Score=118.49  Aligned_cols=157  Identities=20%  Similarity=0.218  Sum_probs=88.9

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+++|.+|||||||+|+|..    .+. .+...++++.......+.                                  
T Consensus         3 v~ivG~~~~GKStl~~~l~~----~~~-~v~~~~~~t~~~~~~~~~----------------------------------   43 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISN----AKP-KIADYPFTTLVPNLGVVR----------------------------------   43 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhc----CCc-cccCCCccccCCcceEEE----------------------------------
Confidence            68999999999999999984    322 233333331110000000                                  


Q ss_pred             HhhcCC-CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch---HHHHhhhcccCCchHHHHH-----H
Q 022736          115 VQRKER-LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL---LFQIDKYRHLSSYPEAIHQ-----I  185 (293)
Q Consensus       115 ~~~~~~-~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~---~~~~~~~~~~~~~~~~~~q-----i  185 (293)
                         ..+ ..+.|+||||+.+.......+ ...++.....+|.+++|+|+...   ......      +.+.+.+     .
T Consensus        44 ---~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~------~~~~l~~~~~~~~  113 (170)
T cd01898          44 ---VDDGRSFVVADIPGLIEGASEGKGL-GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKT------IRNELELYNPELL  113 (170)
T ss_pred             ---cCCCCeEEEEecCcccCcccccCCc-hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHH------HHHHHHHhCcccc
Confidence               122 268899999975322111111 11222333468899999999864   111111      1111211     2


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ..+.++|+||+|+.+...   ....+....+..              ....++.+|++++.|++++.+++.+
T Consensus       114 ~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~  168 (170)
T cd01898         114 EKPRIVVLNKIDLLDEEE---LFELLKELLKEL--------------WGKPVFPISALTGEGLDELLRKLAE  168 (170)
T ss_pred             ccccEEEEEchhcCCchh---hHHHHHHHHhhC--------------CCCCEEEEecCCCCCHHHHHHHHHh
Confidence            467899999999976542   122222222221              0134688999999999999888754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.58  E-value=1.6e-14  Score=117.77  Aligned_cols=164  Identities=16%  Similarity=0.127  Sum_probs=94.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      |+++|+|.+|+|||||+|+|....    +... ...+.+..+....+..             .                 
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~----~~~~-~~~~~t~~~~~~~~~~-------------~-----------------   45 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTN----VAAG-EAGGITQHIGAFEVPA-------------E-----------------   45 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcc----cccc-cCCCeEEeeccEEEec-------------c-----------------
Confidence            789999999999999999998532    1110 1111101100000000             0                 


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI  192 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv  192 (293)
                          ...+.++.++||||.........        .....+|.+++|+|+.........     .....+.+...+.++|
T Consensus        46 ----~~~~~~~~iiDtpG~~~~~~~~~--------~~~~~~d~il~v~d~~~~~~~~~~-----~~~~~~~~~~~p~ivv  108 (168)
T cd01887          46 ----VLKIPGITFIDTPGHEAFTNMRA--------RGASLTDIAILVVAADDGVMPQTI-----EAIKLAKAANVPFIVA  108 (168)
T ss_pred             ----cCCcceEEEEeCCCcHHHHHHHH--------HHHhhcCEEEEEEECCCCccHHHH-----HHHHHHHHcCCCEEEE
Confidence                01246789999999754332221        122467889999999764221110     0122344566789999


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +||+|+.+..     ...+...++.+....  ... .+  ....++++|+.+|+|++++.+++.++
T Consensus       109 ~NK~Dl~~~~-----~~~~~~~~~~~~~~~--~~~-~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (168)
T cd01887         109 LNKIDKPNAN-----PERVKNELSELGLQG--EDE-WG--GDVQIVPTSAKTGEGIDDLLEAILLL  164 (168)
T ss_pred             EEceeccccc-----HHHHHHHHHHhhccc--ccc-cc--CcCcEEEeecccCCCHHHHHHHHHHh
Confidence            9999987532     234444443332110  000 00  12367899999999999999998654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.58  E-value=1.4e-14  Score=136.24  Aligned_cols=167  Identities=24%  Similarity=0.300  Sum_probs=105.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-++++|.+|+|||||+|+|+    +....++...+|++..    .+..         ...                 
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~----~~~~~~~~~~~gtt~~----~~~~---------~~~-----------------  216 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALL----GEERVIVSDIAGTTRD----SIDI---------PFE-----------------  216 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHH----CCCeeecCCCCCceEC----cEeE---------EEE-----------------
Confidence            34568889999999999999999    5545556666665221    1100         000                 


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                             .++..+.++||||+.......   +.+.....+.....+|++++|+|+.......+..     ......+...
T Consensus       217 -------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-----~~~~~~~~~~  284 (429)
T TIGR03594       217 -------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-----IAGLILEAGK  284 (429)
T ss_pred             -------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCC
Confidence                   123368899999986644332   2222222334456789999999998654433321     2223334467


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.++|+||+|+++..   .....+.+.++...+.          +...+++.+||++|.|++++.+++.
T Consensus       285 ~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~----------~~~~~vi~~SA~~g~~v~~l~~~i~  340 (429)
T TIGR03594       285 ALVIVVNKWDLVKDE---KTREEFKKELRRKLPF----------LDFAPIVFISALTGQGVDKLLDAID  340 (429)
T ss_pred             cEEEEEECcccCCCH---HHHHHHHHHHHHhccc----------CCCCceEEEeCCCCCCHHHHHHHHH
Confidence            899999999998322   2455666666544332          1235678999999999988876654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.58  E-value=8.1e-15  Score=117.76  Aligned_cols=151  Identities=23%  Similarity=0.271  Sum_probs=94.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      .++++|.+|||||||+|+++    +.+.+.+.+.++.+.......+                                  
T Consensus         3 ~i~l~G~~~~GKstli~~l~----~~~~~~~~~~~~~~~~~~~~~~----------------------------------   44 (157)
T cd04164           3 KVVIVGKPNVGKSSLLNALA----GRDRAIVSDIAGTTRDVIEESI----------------------------------   44 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHH----CCceEeccCCCCCccceEEEEE----------------------------------
Confidence            47899999999999999999    5555566666654211100000                                  


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-HHhccCEEE
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVVI  192 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-qi~~a~iiv  192 (293)
                         ...+.++.++||||+.+..................+++.+++|+|+.........        .... ....+.++|
T Consensus        45 ---~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~--------~~~~~~~~~~vi~v  113 (157)
T cd04164          45 ---DIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDL--------EILELPADKPIIVV  113 (157)
T ss_pred             ---EeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHH--------HHHHhhcCCCEEEE
Confidence               0123467899999976643322111112223344578999999999864332221        1222 345789999


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +||+|+.+...    .      .              ......+++.+|+.++.|++++..++..
T Consensus       114 ~nK~D~~~~~~----~------~--------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  154 (157)
T cd04164         114 LNKSDLLPDSE----L------L--------------SLLAGKPIIAISAKTGEGLDELKEALLE  154 (157)
T ss_pred             EEchhcCCccc----c------c--------------cccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            99999987542    0      0              0011246788999999999999988865

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.58  E-value=9.8e-15  Score=135.55  Aligned_cols=158  Identities=21%  Similarity=0.262  Sum_probs=93.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      -|+|+|+||||||||+|+|.+    .+.. +.+.+++|.......+..                                
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~----ak~k-Ia~ypfTTl~PnlG~v~~--------------------------------  202 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSN----AKPK-IANYHFTTLVPNLGVVET--------------------------------  202 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHc----CCCc-cccCCcceeceEEEEEEE--------------------------------
Confidence            799999999999999999994    3333 345555433221111100                                


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHH-----HHh
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIH-----QIA  186 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~-----qi~  186 (293)
                          .++..++|+|+||+.+.......+ ...++.+..+++++++|+|++...  ........   +...+.     ...
T Consensus       203 ----~~~~~~~laD~PGliega~~~~gL-g~~fLrhier~~llI~VID~s~~~~~dp~e~~~~---i~~EL~~y~~~L~~  274 (424)
T PRK12297        203 ----DDGRSFVMADIPGLIEGASEGVGL-GHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEK---INKELKLYNPRLLE  274 (424)
T ss_pred             ----eCCceEEEEECCCCcccccccchH-HHHHHHHHhhCCEEEEEEeCCccccCChHHHHHH---HHHHHhhhchhccC
Confidence                123568999999986533221111 123355667889999999996431  11111100   111111     135


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+.+||+||+|+....      +.+....+.+.               ..++++||++++|+++|..++.+
T Consensus       275 kP~IVV~NK~DL~~~~------e~l~~l~~~l~---------------~~i~~iSA~tgeGI~eL~~~L~~  324 (424)
T PRK12297        275 RPQIVVANKMDLPEAE------ENLEEFKEKLG---------------PKVFPISALTGQGLDELLYAVAE  324 (424)
T ss_pred             CcEEEEEeCCCCcCCH------HHHHHHHHHhC---------------CcEEEEeCCCCCCHHHHHHHHHH
Confidence            6889999999974321      22222222221               24688999999999999888754

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.58  E-value=1e-14  Score=137.37  Aligned_cols=165  Identities=21%  Similarity=0.284  Sum_probs=104.6

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ...-++++|.+|+|||||+|+|+    +....++...+|++.    ..+..         ..                  
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll----~~~~~~~~~~~gtt~----~~~~~---------~~------------------  216 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALL----GEERVIVSDIAGTTR----DSIDT---------PF------------------  216 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCceE----EEEEE---------EE------------------
Confidence            34568899999999999999999    555566666776522    11100         00                  


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                            ...+.++.++||||+.....+.   +.+.....+.....+|++++|+|+.......+..     ......+...
T Consensus       217 ------~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-----i~~~~~~~~~  285 (435)
T PRK00093        217 ------ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-----IAGLALEAGR  285 (435)
T ss_pred             ------EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCC
Confidence                  0134568999999986654432   1111122334556789999999998654433221     2223334457


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +.++++||+|+.+.+    ....+.+.++...+.          +...+++.+||++|.|++++.+++
T Consensus       286 ~~ivv~NK~Dl~~~~----~~~~~~~~~~~~l~~----------~~~~~i~~~SA~~~~gv~~l~~~i  339 (435)
T PRK00093        286 ALVIVVNKWDLVDEK----TMEEFKKELRRRLPF----------LDYAPIVFISALTGQGVDKLLEAI  339 (435)
T ss_pred             cEEEEEECccCCCHH----HHHHHHHHHHHhccc----------ccCCCEEEEeCCCCCCHHHHHHHH
Confidence            899999999998543    245555555543321          123568899999999998777654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.57  E-value=2.4e-14  Score=128.27  Aligned_cols=194  Identities=20%  Similarity=0.181  Sum_probs=106.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccch--
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH--  105 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~--  105 (293)
                      .+..+++|+|++|||||||++.|...  ..|.+++++..|+.. ....+.++.+.. .  ..+ .....|+.++.+..  
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~-~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~  106 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS-PFTGGSILGDRT-R--MQR-LATDPGAFIRSMPTRG  106 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-Ccchhhhcccch-h--hhh-cccCCCceeeecCccc
Confidence            35789999999999999999999874  458899999999875 211122221100 0  000 00112222222111  


Q ss_pred             -------hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCc
Q 022736          106 -------SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY  178 (293)
Q Consensus       106 -------~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~  178 (293)
                             ...+.+.. +. ..++|++||||+|......-           ....+|.++++.++..... +..      +
T Consensus       107 ~~~~~~~~~~~~~~~-l~-~~g~D~viidT~G~~~~e~~-----------i~~~aD~i~vv~~~~~~~e-l~~------~  166 (300)
T TIGR00750       107 HLGGLSQATRELILL-LD-AAGYDVIIVETVGVGQSEVD-----------IANMADTFVVVTIPGTGDD-LQG------I  166 (300)
T ss_pred             cccchhHHHHHHHHH-HH-hCCCCEEEEeCCCCchhhhH-----------HHHhhceEEEEecCCccHH-HHH------H
Confidence                   12222222 22 36899999999997744311           1133566676665543222 111      1


Q ss_pred             hHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       179 ~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .  ....+.++++++||+|+............+...+..+....      .+ .. ..++.+|+++++|++++.+++.+.
T Consensus       167 ~--~~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~------~~-~~-~~v~~iSA~~g~Gi~~L~~~i~~~  236 (300)
T TIGR00750       167 K--AGLMEIADIYVVNKADGEGATNVTIARLMLALALEEIRRRE------DG-WR-PPVLTTSAVEGRGIDELWDAIEEH  236 (300)
T ss_pred             H--HHHhhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccc------cC-CC-CCEEEEEccCCCCHHHHHHHHHHH
Confidence            1  12246789999999999865311000001111122221110      00 01 247899999999999999988654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.57  E-value=1.2e-14  Score=136.87  Aligned_cols=157  Identities=24%  Similarity=0.228  Sum_probs=99.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      |.|+++|.+|+|||||+|+|+    +.+.+++...+|.    +++....         ...                   
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~----~~~~~~v~~~~~~----t~d~~~~---------~~~-------------------   45 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLT----GKRDAIVADTPGV----TRDRIYG---------EAE-------------------   45 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHh----CCCceeeCCCCCC----cccceEE---------EEE-------------------
Confidence            678999999999999999999    6666777776664    2211111         000                   


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHH-HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736          113 QLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV  191 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~-~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii  191 (293)
                           ..+.++.++||||+..... +... +..........+|++++|+|+.......+..     ...++.+...+.++
T Consensus        46 -----~~~~~~~liDT~G~~~~~~~~~~~-~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~-----~~~~l~~~~~piil  114 (435)
T PRK00093         46 -----WLGREFILIDTGGIEPDDDGFEKQ-IREQAELAIEEADVILFVVDGRAGLTPADEE-----IAKILRKSNKPVIL  114 (435)
T ss_pred             -----ECCcEEEEEECCCCCCcchhHHHH-HHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCcEEE
Confidence                 1335689999999876222 1111 1112233446789999999998643332211     23455566789999


Q ss_pred             EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+||+|+.+.++      .+... ..              +.+..++.+|+.+|.|++++.+++.+
T Consensus       115 v~NK~D~~~~~~------~~~~~-~~--------------lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        115 VVNKVDGPDEEA------DAYEF-YS--------------LGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             EEECccCccchh------hHHHH-Hh--------------cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            999999754221      11111 11              12345788999999999998888754

>PRK11058 GTPase HflX; Provisional

Probab=99.57  E-value=3e-14  Score=132.90  Aligned_cols=161  Identities=20%  Similarity=0.300  Sum_probs=99.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ..+|.|+++|.+|||||||+|+|+    +.+++ +.+.++++.......+.             +               
T Consensus       195 ~~~p~ValVG~~NaGKSSLlN~Lt----~~~~~-v~~~~~tTld~~~~~i~-------------l---------------  241 (426)
T PRK11058        195 ADVPTVSLVGYTNAGKSTLFNRIT----EARVY-AADQLFATLDPTLRRID-------------V---------------  241 (426)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh----CCcee-eccCCCCCcCCceEEEE-------------e---------------
Confidence            356899999999999999999999    55555 56666653322111110             0               


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--
Q 022736          110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--  185 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--  185 (293)
                              .+...++|+||+|+..  |....+.|  ...+.....+|.+++|+|+++....... .   .+...+.++  
T Consensus       242 --------~~~~~~~l~DTaG~~r~lp~~lve~f--~~tl~~~~~ADlIL~VvDaS~~~~~e~l-~---~v~~iL~el~~  307 (426)
T PRK11058        242 --------ADVGETVLADTVGFIRHLPHDLVAAF--KATLQETRQATLLLHVVDAADVRVQENI-E---AVNTVLEEIDA  307 (426)
T ss_pred             --------CCCCeEEEEecCcccccCCHHHHHHH--HHHHHHhhcCCEEEEEEeCCCccHHHHH-H---HHHHHHHHhcc
Confidence                    1122578999999743  55555543  2345566789999999999864321110 0   011223333  


Q ss_pred             -hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       186 -~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                       ..+.++|+||+|+.+...     ..+. . ...              .....+.+||++|+|+++|.+++.+.
T Consensus       308 ~~~pvIiV~NKiDL~~~~~-----~~~~-~-~~~--------------~~~~~v~ISAktG~GIdeL~e~I~~~  360 (426)
T PRK11058        308 HEIPTLLVMNKIDMLDDFE-----PRID-R-DEE--------------NKPIRVWLSAQTGAGIPLLFQALTER  360 (426)
T ss_pred             CCCCEEEEEEcccCCCchh-----HHHH-H-Hhc--------------CCCceEEEeCCCCCCHHHHHHHHHHH
Confidence             367899999999975321     1111 0 000              01124678999999999999888653

>cd04171 SelB SelB subfamily

Probab=99.57  E-value=1.3e-14  Score=117.59  Aligned_cols=111  Identities=16%  Similarity=0.211  Sum_probs=63.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-cCEEEEeCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDLV  199 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D~~  199 (293)
                      ..+.++||||.....        .........+|.+++|+|+.........     .....+..... +.++++||+|+.
T Consensus        51 ~~~~~~DtpG~~~~~--------~~~~~~~~~ad~ii~V~d~~~~~~~~~~-----~~~~~~~~~~~~~~ilv~NK~Dl~  117 (164)
T cd04171          51 KRLGFIDVPGHEKFI--------KNMLAGAGGIDLVLLVVAADEGIMPQTR-----EHLEILELLGIKRGLVVLTKADLV  117 (164)
T ss_pred             cEEEEEECCChHHHH--------HHHHhhhhcCCEEEEEEECCCCccHhHH-----HHHHHHHHhCCCcEEEEEECcccc
Confidence            457899999974321        1112234578999999999752111110     01122333444 789999999997


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.........++.+.++...            ....+++++|+++++|++++..++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~v~~l~~~l~  162 (164)
T cd04171         118 DEDWLELVEEEIRELLAGTF------------LADAPIFPVSAVTGEGIEELKEYLD  162 (164)
T ss_pred             CHHHHHHHHHHHHHHHHhcC------------cCCCcEEEEeCCCCcCHHHHHHHHh
Confidence            64211011223333333210            0124678999999999999887764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.57  E-value=7.2e-15  Score=119.88  Aligned_cols=115  Identities=17%  Similarity=0.104  Sum_probs=69.3

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~  196 (293)
                      +.++.++||||..........+        ...++.+++|+|+...........   .+..+..   ....|.++++||+
T Consensus        49 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~~~~v~vvd~~~~~~~~~~~~---~~~~~~~~~~~~~~p~ilv~NK~  117 (167)
T cd04160          49 NARLKFWDLGGQESLRSLWDKY--------YAECHAIIYVIDSTDRERFEESKS---ALEKVLRNEALEGVPLLILANKQ  117 (167)
T ss_pred             CEEEEEEECCCChhhHHHHHHH--------hCCCCEEEEEEECchHHHHHHHHH---HHHHHHhChhhcCCCEEEEEEcc
Confidence            4678899999976544333221        246788999999976432211100   0111111   1246889999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+..    ...++...++......       + .....++.+||++|+|++++..|+.+
T Consensus       118 D~~~~~----~~~~~~~~~~~~~~~~-------~-~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         118 DLPDAL----SVEEIKEVFQDKAEEI-------G-RRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             ccccCC----CHHHHHHHhccccccc-------c-CCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            987643    2344555444332110       0 01135789999999999999999853

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.56  E-value=1.5e-14  Score=121.27  Aligned_cols=176  Identities=14%  Similarity=0.164  Sum_probs=101.6

Q ss_pred             cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce
Q 022736           20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI   99 (293)
Q Consensus        20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci   99 (293)
                      |...-++......|-++++|.+|+|||||+|+|+...   .++.+...+|.+..++..                      
T Consensus        12 ~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~~~~----------------------   66 (196)
T PRK00454         12 SAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRK---NLARTSKTPGRTQLINFF----------------------   66 (196)
T ss_pred             hhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---CcccccCCCCceeEEEEE----------------------
Confidence            4444455556677889999999999999999999421   133444444432111100                      


Q ss_pred             eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCc---HHHHH--hhhcchhhccccccccEEEEEcccchHHHHhhhcc
Q 022736          100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANP---APLAS--VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH  174 (293)
Q Consensus       100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~---~~~~~--~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~  174 (293)
                                        ..+.++.|+||||+...   ....+  ..+...++.....++.+++++|+..........  
T Consensus        67 ------------------~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--  126 (196)
T PRK00454         67 ------------------EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ--  126 (196)
T ss_pred             ------------------ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHH--
Confidence                              00145889999996432   11010  111122334444567788889976533222110  


Q ss_pred             cCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhh
Q 022736          175 LSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGL  254 (293)
Q Consensus       175 ~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~  254 (293)
                         ...++.....+.++++||+|+.+..+    ...+...++......           ...++++|+++++|++++.++
T Consensus       127 ---i~~~l~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~i~~~l~~~-----------~~~~~~~Sa~~~~gi~~l~~~  188 (196)
T PRK00454        127 ---MIEWLKEYGIPVLIVLTKADKLKKGE----RKKQLKKVRKALKFG-----------DDEVILFSSLKKQGIDELRAA  188 (196)
T ss_pred             ---HHHHHHHcCCcEEEEEECcccCCHHH----HHHHHHHHHHHHHhc-----------CCceEEEEcCCCCCHHHHHHH
Confidence               22334445567899999999986542    233232232221110           135678999999999999988


Q ss_pred             hhhh
Q 022736          255 LEEH  258 (293)
Q Consensus       255 l~~~  258 (293)
                      +...
T Consensus       189 i~~~  192 (196)
T PRK00454        189 IAKW  192 (196)
T ss_pred             HHHH
Confidence            8653

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.56  E-value=1.9e-14  Score=130.08  Aligned_cols=163  Identities=21%  Similarity=0.255  Sum_probs=95.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ++-|+|+|++|||||||+|+|.+.    +. .+.+.+.++.....-.+.             +                 
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~----~~-~va~y~fTT~~p~ig~v~-------------~-----------------  201 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAA----KP-KIADYPFTTLVPNLGVVR-------------V-----------------  201 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcC----Cc-cccCCCCCccCCEEEEEE-------------e-----------------
Confidence            455999999999999999999953    22 244544442211110000             0                 


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHH-----H
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIH-----Q  184 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~-----q  184 (293)
                            .+..++.|+||||+.+.......+ ...++++..+++.+++|+|+....  ........   +...+.     .
T Consensus       202 ------~~~~~~~i~D~PGli~~a~~~~gL-g~~flrhierad~ll~VvD~s~~~~~~~~e~l~~---l~~EL~~~~~~l  271 (329)
T TIGR02729       202 ------DDGRSFVIADIPGLIEGASEGAGL-GHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEI---IRNELKKYSPEL  271 (329)
T ss_pred             ------CCceEEEEEeCCCcccCCcccccH-HHHHHHHHHhhCEEEEEEcCccccccCHHHHHHH---HHHHHHHhhhhh
Confidence                  112568999999986543221111 122345556789999999997531  11111100   111111     1


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ...+.++|+||+|+.++.    ...++.+.+.+..             . ..++.+||++++|++++..++.+
T Consensus       272 ~~kp~IIV~NK~DL~~~~----~~~~~~~~l~~~~-------------~-~~vi~iSAktg~GI~eL~~~I~~  326 (329)
T TIGR02729       272 AEKPRIVVLNKIDLLDEE----ELAELLKELKKAL-------------G-KPVFPISALTGEGLDELLYALAE  326 (329)
T ss_pred             ccCCEEEEEeCccCCChH----HHHHHHHHHHHHc-------------C-CcEEEEEccCCcCHHHHHHHHHH
Confidence            246889999999997653    2233333332211             1 24788999999999999988764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.55  E-value=1.6e-14  Score=130.09  Aligned_cols=169  Identities=22%  Similarity=0.335  Sum_probs=109.0

Q ss_pred             cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce
Q 022736           20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI   99 (293)
Q Consensus        20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci   99 (293)
                      ....++...+..+|.|.++|+.|||||||+|+|...    .+.+-.-=|.+ ...+.+.+.             +     
T Consensus       180 R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~----~~~~~d~LFAT-LdpttR~~~-------------l-----  236 (411)
T COG2262         180 REPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGA----DVYVADQLFAT-LDPTTRRIE-------------L-----  236 (411)
T ss_pred             HHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhcc----Ceecccccccc-ccCceeEEE-------------e-----
Confidence            334455666778999999999999999999999932    22221111222 222221111             0     


Q ss_pred             eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC
Q 022736          100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS  177 (293)
Q Consensus       100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~  177 (293)
                                        .++..+++-||.|+..  |..+.++|  ...+.+....|.++.|||++... .....   ..
T Consensus       237 ------------------~~g~~vlLtDTVGFI~~LP~~LV~AF--ksTLEE~~~aDlllhVVDaSdp~-~~~~~---~~  292 (411)
T COG2262         237 ------------------GDGRKVLLTDTVGFIRDLPHPLVEAF--KSTLEEVKEADLLLHVVDASDPE-ILEKL---EA  292 (411)
T ss_pred             ------------------CCCceEEEecCccCcccCChHHHHHH--HHHHHHhhcCCEEEEEeecCChh-HHHHH---HH
Confidence                              2346789999999665  66666665  46788889999999999998752 11111   11


Q ss_pred             chHHHHHH---hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhh
Q 022736          178 YPEAIHQI---AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGL  254 (293)
Q Consensus       178 ~~~~~~qi---~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~  254 (293)
                      ....+.++   ..|.++|+||+|++....       ....+....               ...+.+||.+|.|++.|.+.
T Consensus       293 v~~vL~el~~~~~p~i~v~NKiD~~~~~~-------~~~~~~~~~---------------~~~v~iSA~~~~gl~~L~~~  350 (411)
T COG2262         293 VEDVLAEIGADEIPIILVLNKIDLLEDEE-------ILAELERGS---------------PNPVFISAKTGEGLDLLRER  350 (411)
T ss_pred             HHHHHHHcCCCCCCEEEEEecccccCchh-------hhhhhhhcC---------------CCeEEEEeccCcCHHHHHHH
Confidence            23344444   357899999999987641       111221111               14578899999999999887


Q ss_pred             hhh
Q 022736          255 LEE  257 (293)
Q Consensus       255 l~~  257 (293)
                      +.+
T Consensus       351 i~~  353 (411)
T COG2262         351 IIE  353 (411)
T ss_pred             HHH
Confidence            754

>PRK09866 hypothetical protein; Provisional

Probab=99.55  E-value=6.8e-14  Score=132.87  Aligned_cols=124  Identities=17%  Similarity=0.126  Sum_probs=82.7

Q ss_pred             CCCEEEEecCCCCCcHHH-HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc--cCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--ADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~--a~iivlNK~  196 (293)
                      ..+++||||||+..+..- ....+.    .....+|.|++|+|+.......+..     +...+.+...  +.++|+||+
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M~----eqL~eADvVLFVVDat~~~s~~Dee-----Ilk~Lkk~~K~~PVILVVNKI  299 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKMLN----QQLARASAVLAVLDYTQLKSISDEE-----VREAILAVGQSVPLYVLVNKF  299 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHHH----HHHhhCCEEEEEEeCCCCCChhHHH-----HHHHHHhcCCCCCEEEEEEcc
Confidence            478999999999876422 222222    2457889999999998654333321     2344455553  899999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCC
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKS  262 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~  262 (293)
                      |+.+..+  ...+.+...++.....        ..+++.+++++||+.|.|++.|.+.+..+...|
T Consensus       300 Dl~dree--ddkE~Lle~V~~~L~q--------~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l~  355 (741)
T PRK09866        300 DQQDRNS--DDADQVRALISGTLMK--------GCITPQQIFPVSSMWGYLANRARHELANNGKLP  355 (741)
T ss_pred             cCCCccc--chHHHHHHHHHHHHHh--------cCCCCceEEEEeCCCCCCHHHHHHHHHhCCCCC
Confidence            9975332  2345666665533111        123567899999999999999999998765544

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.55  E-value=1.7e-14  Score=116.26  Aligned_cols=153  Identities=21%  Similarity=0.213  Sum_probs=88.3

Q ss_pred             EEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHHHh
Q 022736           37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQ  116 (293)
Q Consensus        37 i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l~~  116 (293)
                      |+|..|+|||||+|++..    .+ ..+...+|.+.......+.                                    
T Consensus         1 l~G~~~~GKssl~~~~~~----~~-~~~~~~~~~t~~~~~~~~~------------------------------------   39 (158)
T cd01879           1 LVGNPNVGKTTLFNALTG----AR-QKVGNWPGVTVEKKEGRFK------------------------------------   39 (158)
T ss_pred             CCCCCCCCHHHHHHHHhc----Cc-ccccCCCCcccccceEEEe------------------------------------
Confidence            579999999999999984    32 2233334432211111110                                    


Q ss_pred             hcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeC
Q 022736          117 RKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK  195 (293)
Q Consensus       117 ~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK  195 (293)
                       ..+.++.++||||+.+..... +..+....+.. ..+|.+++|+|+........       ....+.+...+.++|+||
T Consensus        40 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~-------~~~~~~~~~~~~iiv~NK  110 (158)
T cd01879          40 -LGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIVNVVDATNLERNLY-------LTLQLLELGLPVVVALNM  110 (158)
T ss_pred             -eCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEEEEeeCCcchhHHH-------HHHHHHHcCCCEEEEEeh
Confidence             123468899999976532210 00011111222 47889999999986432211       112233446789999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.+....   ........+.++               ..++.+|+.++.|+.++..++..
T Consensus       111 ~Dl~~~~~~---~~~~~~~~~~~~---------------~~~~~iSa~~~~~~~~l~~~l~~  154 (158)
T cd01879         111 IDEAEKRGI---KIDLDKLSELLG---------------VPVVPTSARKGEGIDELKDAIAE  154 (158)
T ss_pred             hhhcccccc---hhhHHHHHHhhC---------------CCeEEEEccCCCCHHHHHHHHHH
Confidence            999765432   111222222211               24688999999999998888754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.53  E-value=2.9e-14  Score=141.52  Aligned_cols=162  Identities=25%  Similarity=0.230  Sum_probs=103.1

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ...|.|+|+|.+|+|||||+|+|+    +.+.+++...+|.+    ++.+...                           
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~----~~~~~iv~~~pGvT----~d~~~~~---------------------------  317 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRIL----GRREAVVEDTPGVT----RDRVSYD---------------------------  317 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCee----EEEEEEE---------------------------
Confidence            346889999999999999999999    66778888888752    2222110                           


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                            ...++..+.++||||+.....-....+..........+|++++|+|+.......+..     +...+.....+.
T Consensus       318 ------~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~-----i~~~Lr~~~~pv  386 (712)
T PRK09518        318 ------AEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDER-----IVRMLRRAGKPV  386 (712)
T ss_pred             ------EEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCE
Confidence                  002345688999999764221111111122233346789999999997643333221     233445567899


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ++|+||+|+.....      ......+               +.+..++++||.+|.|++++.+++.+.
T Consensus       387 IlV~NK~D~~~~~~------~~~~~~~---------------lg~~~~~~iSA~~g~GI~eLl~~i~~~  434 (712)
T PRK09518        387 VLAVNKIDDQASEY------DAAEFWK---------------LGLGEPYPISAMHGRGVGDLLDEALDS  434 (712)
T ss_pred             EEEEECcccccchh------hHHHHHH---------------cCCCCeEEEECCCCCCchHHHHHHHHh
Confidence            99999999865321      1111111               122345789999999999998887643

>cd01878 HflX HflX subfamily

Probab=99.53  E-value=3.4e-14  Score=120.16  Aligned_cols=159  Identities=20%  Similarity=0.340  Sum_probs=91.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ...+.|+|+|++|||||||+|++++.    .+ .+.+.++.+.......+             .+               
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~----~~-~~~~~~~~t~~~~~~~~-------------~~---------------   85 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGA----DV-YAEDQLFATLDPTTRRL-------------RL---------------   85 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcc----hh-ccCCccceeccceeEEE-------------Ee---------------
Confidence            45789999999999999999999953    21 11222221111000000             00               


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCc--HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-
Q 022736          110 ALEQLVQRKERLDHILLETTGLANP--APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~--~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-  186 (293)
                              .+..++.|+||||+.+.  ......+  ...+.....+|.+++|+|+.........    ..+...+.++. 
T Consensus        86 --------~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~~~~~~d~ii~v~D~~~~~~~~~~----~~~~~~l~~~~~  151 (204)
T cd01878          86 --------PDGREVLLTDTVGFIRDLPHQLVEAF--RSTLEEVAEADLLLHVVDASDPDYEEQI----ETVEKVLKELGA  151 (204)
T ss_pred             --------cCCceEEEeCCCccccCCCHHHHHHH--HHHHHHHhcCCeEEEEEECCCCChhhHH----HHHHHHHHHcCc
Confidence                    12236899999997542  2222221  1122334578999999999754322111    00223344433 


Q ss_pred             --ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       187 --~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                        .+.++|+||+|+.+...       .......               ....++.+|++++.|++++..++..
T Consensus       152 ~~~~viiV~NK~Dl~~~~~-------~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~~L~~  202 (204)
T cd01878         152 EDIPMILVLNKIDLLDDEE-------LEERLEA---------------GRPDAVFISAKTGEGLDELLEAIEE  202 (204)
T ss_pred             CCCCEEEEEEccccCChHH-------HHHHhhc---------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence              46799999999976542       1111110               1235789999999999999888753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.53  E-value=1.6e-14  Score=136.10  Aligned_cols=153  Identities=23%  Similarity=0.258  Sum_probs=100.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      +.++++|.+|+|||||+|+|+    +.+.+++.+.+|++.......+.                                
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~----~~~~a~v~~~~gtT~d~~~~~i~--------------------------------  259 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALL----GEERAIVTDIAGTTRDVIEEHIN--------------------------------  259 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHh----CCCCcccCCCCCcccccEEEEEE--------------------------------
Confidence            457889999999999999999    55667777777763221111110                                


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI  192 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv  192 (293)
                           .++..+.++||||+.++....+.+.....+.....+|.+++|+|++........       ..+......+.++|
T Consensus       260 -----~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~-------~~l~~~~~~piiiV  327 (449)
T PRK05291        260 -----LDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDD-------EILEELKDKPVIVV  327 (449)
T ss_pred             -----ECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHH-------HHHHhcCCCCcEEE
Confidence                 123457899999987765554443333344556779999999999764322110       11111224688999


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +||+|+.+....    .      .               .....++.+|+++|+|+++|..++.+.
T Consensus       328 ~NK~DL~~~~~~----~------~---------------~~~~~~i~iSAktg~GI~~L~~~L~~~  368 (449)
T PRK05291        328 LNKADLTGEIDL----E------E---------------ENGKPVIRISAKTGEGIDELREAIKEL  368 (449)
T ss_pred             EEhhhccccchh----h------h---------------ccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence            999999764311    0      0               011356889999999999999998654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.53  E-value=3.5e-14  Score=134.85  Aligned_cols=166  Identities=22%  Similarity=0.218  Sum_probs=97.2

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ..+-++++|.+|+|||||+|+|+    +....+++..+|++.    +.+..         .++                 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~----~~~~~~~s~~~gtT~----d~~~~---------~~~-----------------  255 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLA----GEERSVVDDVAGTTV----DPVDS---------LIE-----------------  255 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCccC----CcceE---------EEE-----------------
Confidence            46778999999999999999999    555556677777522    11110         000                 


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                             .++..+.|+||||+.......   +.+..-........+|++++|+|++......+..     ....+.....
T Consensus       256 -------~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-----~~~~~~~~~~  323 (472)
T PRK03003        256 -------LGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-----VLSMVIEAGR  323 (472)
T ss_pred             -------ECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCC
Confidence                   123357899999974321110   1110001112335789999999998654332211     1222233456


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.++|+||+|+.+.+.    ...+...+......          ....+++.+||++|.|++++...+.
T Consensus       324 piIiV~NK~Dl~~~~~----~~~~~~~i~~~l~~----------~~~~~~~~~SAk~g~gv~~lf~~i~  378 (472)
T PRK03003        324 ALVLAFNKWDLVDEDR----RYYLEREIDRELAQ----------VPWAPRVNISAKTGRAVDKLVPALE  378 (472)
T ss_pred             CEEEEEECcccCChhH----HHHHHHHHHHhccc----------CCCCCEEEEECCCCCCHHHHHHHHH
Confidence            8899999999986431    12233333321111          1224567899999999988876664

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.53  E-value=2.7e-14  Score=141.67  Aligned_cols=157  Identities=18%  Similarity=0.201  Sum_probs=97.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      ..++++|.+|+|||||+|+|..    .+. .+.|.+|.+.......+.                                
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg----~~~-~vgn~pGvTve~k~g~~~--------------------------------   46 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTG----ARQ-RVGNWAGVTVERKEGQFS--------------------------------   46 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCCceEeeEEEEEE--------------------------------
Confidence            4688999999999999999984    333 356777753311111110                                


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHH------HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          113 QLVQRKERLDHILLETTGLANPAPL------ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~------~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                           .++.++.++||||+.+....      .+... ..++ .....|.++.|+|+++....+.       +...+.+.+
T Consensus        47 -----~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~-~~~l-~~~~aD~vI~VvDat~ler~l~-------l~~ql~e~g  112 (772)
T PRK09554         47 -----TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA-CHYI-LSGDADLLINVVDASNLERNLY-------LTLQLLELG  112 (772)
T ss_pred             -----cCceEEEEEECCCccccccccccccHHHHHH-HHHH-hccCCCEEEEEecCCcchhhHH-------HHHHHHHcC
Confidence                 23456889999997653221      11111 1111 1246899999999998654332       122345567


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .|.++++||+|+.+......+.+++.+.+   .               .+++++|+.+|+|++++.+.+.+.
T Consensus       113 iPvIvVlNK~Dl~~~~~i~id~~~L~~~L---G---------------~pVvpiSA~~g~GIdeL~~~I~~~  166 (772)
T PRK09554        113 IPCIVALNMLDIAEKQNIRIDIDALSARL---G---------------CPVIPLVSTRGRGIEALKLAIDRH  166 (772)
T ss_pred             CCEEEEEEchhhhhccCcHHHHHHHHHHh---C---------------CCEEEEEeecCCCHHHHHHHHHHh
Confidence            89999999999875443212222222222   1               246789999999999998887553

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.52  E-value=3.7e-14  Score=118.16  Aligned_cols=164  Identities=18%  Similarity=0.144  Sum_probs=95.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +.+-++++|.+|||||||++++..    .+.+.+....+    .+...+                               
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~----~~~~~~~~t~~----~~~~~~-------------------------------   56 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKN----DRLAQHQPTQH----PTSEEL-------------------------------   56 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhc----CCCcccCCccc----cceEEE-------------------------------
Confidence            346678999999999999999994    33222111111    110000                               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~  187 (293)
                            ..++.++.++||||...........        ...++.+++|+|+............   +...+.   ....
T Consensus        57 ------~~~~~~~~~~D~~G~~~~~~~~~~~--------~~~ad~ii~vvD~~~~~~~~~~~~~---l~~l~~~~~~~~~  119 (184)
T smart00178       57 ------AIGNIKFTTFDLGGHQQARRLWKDY--------FPEVNGIVYLVDAYDKERFAESKRE---LDALLSDEELATV  119 (184)
T ss_pred             ------EECCEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECCcHHHHHHHHHH---HHHHHcChhhcCC
Confidence                  0123567899999986554444322        2468899999999764322111000   111111   1246


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |.++|+||+|+....    ..+++++.+.-......   ..........++++|+++|+|++++.+||.+
T Consensus       120 piliv~NK~Dl~~~~----~~~~i~~~l~l~~~~~~---~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      120 PFLILGNKIDAPYAA----SEDELRYALGLTNTTGS---KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             CEEEEEeCccccCCC----CHHHHHHHcCCCccccc---ccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence            889999999986432    34566655532110000   0000123456899999999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.52  E-value=5.9e-14  Score=139.36  Aligned_cols=165  Identities=19%  Similarity=0.175  Sum_probs=100.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ..+-++++|.+|+|||||+|+|+    +.+..++...+|++...-...+             .                 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~----~~~~~~v~~~~gtT~d~~~~~~-------------~-----------------  494 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLT----HEERAVVNDLAGTTRDPVDEIV-------------E-----------------  494 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh----CccccccCCCCCCCcCcceeEE-------------E-----------------
Confidence            45788999999999999999999    5555666777776321110000             0                 


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHH--hhh-cchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLAS--VLW-LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~--~~~-~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                             .++.++.|+||||+........  .+. .-........+|++++|+|++......+..     ..........
T Consensus       495 -------~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-----i~~~~~~~~~  562 (712)
T PRK09518        495 -------IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-----VMSMAVDAGR  562 (712)
T ss_pred             -------ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCC
Confidence                   1334678999999764322111  111 011123346789999999998654332211     1222333467


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +.++|+||+|+.+..    ....+.+.++...+.          ++..+++.+||++|.|++++.+.+
T Consensus       563 piIiV~NK~DL~~~~----~~~~~~~~~~~~l~~----------~~~~~ii~iSAktg~gv~~L~~~i  616 (712)
T PRK09518        563 ALVLVFNKWDLMDEF----RRQRLERLWKTEFDR----------VTWARRVNLSAKTGWHTNRLAPAM  616 (712)
T ss_pred             CEEEEEEchhcCChh----HHHHHHHHHHHhccC----------CCCCCEEEEECCCCCCHHHHHHHH
Confidence            899999999998643    223444444432211          233566889999999988877655

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.52  E-value=4.8e-14  Score=115.10  Aligned_cols=161  Identities=21%  Similarity=0.214  Sum_probs=86.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      |.++++|.+|+|||||+|+|+..    +.. +...++.+..+.....                                 
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~----~~~-~~~~~~~t~~~~~~~~---------------------------------   42 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRA----KPE-VAPYPFTTKSLFVGHF---------------------------------   42 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcC----CCc-cCCCCCcccceeEEEE---------------------------------
Confidence            67899999999999999999953    211 1112221111100000                                 


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhcc-ccccccEEEEEcccchHHH-HhhhcccCCchHHHHHH--hcc
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLES-AVRLDSIITVVDAKNLLFQ-IDKYRHLSSYPEAIHQI--AFA  188 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~-~~~~d~vi~vvDa~~~~~~-~~~~~~~~~~~~~~~qi--~~a  188 (293)
                          ...+.++.|+||||+.+........+....+.. ....|.+++|+|+...... .....   .+...+.+.  ..+
T Consensus        43 ----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~---~~~~~l~~~~~~~p  115 (168)
T cd01897          43 ----DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQL---SLFEEIKPLFKNKP  115 (168)
T ss_pred             ----ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHH---HHHHHHHhhcCcCC
Confidence                012356899999997532100000000000101 1224789999999753210 01000   012222233  568


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .++|+||+|+.+..+    ........+ .              ....++.+||++|+|++++..|+.+
T Consensus       116 vilv~NK~Dl~~~~~----~~~~~~~~~-~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (168)
T cd01897         116 VIVVLNKIDLLTFED----LSEIEEEEE-L--------------EGEEVLKISTLTEEGVDEVKNKACE  165 (168)
T ss_pred             eEEEEEccccCchhh----HHHHHHhhh-h--------------ccCceEEEEecccCCHHHHHHHHHH
Confidence            899999999976542    122111111 0              1135789999999999999988754

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.50  E-value=8.8e-14  Score=110.55  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=63.3

Q ss_pred             EEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCC
Q 022736          124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPER  203 (293)
Q Consensus       124 iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~  203 (293)
                      .++||||.......    +..........+|.+++|+|+.+......        ..+......+.++|+||+|+.+...
T Consensus        38 ~~iDt~G~~~~~~~----~~~~~~~~~~~ad~vilv~d~~~~~s~~~--------~~~~~~~~~p~ilv~NK~Dl~~~~~  105 (142)
T TIGR02528        38 GAIDTPGEYVENRR----LYSALIVTAADADVIALVQSATDPESRFP--------PGFASIFVKPVIGLVTKIDLAEADV  105 (142)
T ss_pred             eeecCchhhhhhHH----HHHHHHHHhhcCCEEEEEecCCCCCcCCC--------hhHHHhccCCeEEEEEeeccCCccc
Confidence            48999996311111    11111223467899999999976544221        1222233458999999999875331


Q ss_pred             CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          204 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       204 ~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                         ..+...+.++..+              ...++.+||++|+|++++..++.
T Consensus       106 ---~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       106 ---DIERAKELLETAG--------------AEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             ---CHHHHHHHHHHcC--------------CCcEEEEecCCCCCHHHHHHHHh
Confidence               2344444444322              13568899999999999887763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.50  E-value=2.2e-13  Score=110.35  Aligned_cols=161  Identities=18%  Similarity=0.273  Sum_probs=92.1

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+++|.+|||||||+|.|...   ..........+.+..+.  ..                                   
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~---~~~~~~~~~~~~t~~~~--~~-----------------------------------   41 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNR---KKLARTSKTPGKTQLIN--FF-----------------------------------   41 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC---CceeeecCCCCcceeEE--EE-----------------------------------
Confidence            688999999999999999942   12222333333211000  00                                   


Q ss_pred             HhhcCCCCEEEEecCCCCCc------HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          115 VQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~------~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                         ..+..+.++||||+...      ...... ....++.....++.+++++|..........     .+..++.....+
T Consensus        42 ---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-----~~~~~l~~~~~~  112 (170)
T cd01876          42 ---NVNDKFRLVDLPGYGYAKVSKEVKEKWGK-LIEEYLENRENLKGVVLLIDSRHGPTEIDL-----EMLDWLEELGIP  112 (170)
T ss_pred             ---EccCeEEEecCCCccccccCHHHHHHHHH-HHHHHHHhChhhhEEEEEEEcCcCCCHhHH-----HHHHHHHHcCCC
Confidence               01125789999997653      111111 112233444567788999998754222111     123445555678


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .++++||+|+.+..+.......+...++..             ....+++++|++++.+.+++.+++.+
T Consensus       113 vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~Sa~~~~~~~~l~~~l~~  168 (170)
T cd01876         113 FLVVLTKADKLKKSELAKALKEIKKELKLF-------------EIDPPIILFSSLKGQGIDELRALIEK  168 (170)
T ss_pred             EEEEEEchhcCChHHHHHHHHHHHHHHHhc-------------cCCCceEEEecCCCCCHHHHHHHHHH
Confidence            899999999976543211112222222210             12246789999999999999998864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04154 Arl2 Arl2 subfamily

Probab=99.48  E-value=1.3e-13  Score=113.53  Aligned_cols=112  Identities=18%  Similarity=0.123  Sum_probs=66.4

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~  196 (293)
                      +..+.++||||...........        ....+++++|+|+............   +..++.   .-..+.++|+||+
T Consensus        57 ~~~l~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~~p~iiv~nK~  125 (173)
T cd04154          57 GYKLNIWDVGGQKTLRPYWRNY--------FESTDALIWVVDSSDRLRLDDCKRE---LKELLQEERLAGATLLILANKQ  125 (173)
T ss_pred             CEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHHHH---HHHHHhChhhcCCCEEEEEECc
Confidence            3457899999976433333221        2467889999999875322111000   111111   1245789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+.+..    ..+++...++.....          .....++.+||++|+|++++..|+.
T Consensus       126 Dl~~~~----~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         126 DLPGAL----SEEEIREALELDKIS----------SHHWRIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             ccccCC----CHHHHHHHhCccccC----------CCceEEEeccCCCCcCHHHHHHHHh
Confidence            987643    234444444321100          0113578999999999999998874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.48  E-value=3.3e-14  Score=123.61  Aligned_cols=167  Identities=22%  Similarity=0.230  Sum_probs=100.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      +.++-+.++|+||||||||+|+|.++.+    .|-...|.+ ....--.+..                            
T Consensus       194 KsiadvGLVG~PNAGKSTLL~als~AKp----kVa~YaFTT-L~P~iG~v~y----------------------------  240 (366)
T KOG1489|consen  194 KSIADVGLVGFPNAGKSTLLNALSRAKP----KVAHYAFTT-LRPHIGTVNY----------------------------  240 (366)
T ss_pred             eeecccceecCCCCcHHHHHHHhhccCC----cccccceee-eccccceeec----------------------------
Confidence            4466689999999999999999996532    333333322 1111000000                            


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHH--HHH
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAI--HQI  185 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~--~qi  185 (293)
                              .+..++-+-|.||+.+.+.....+- ...+++..+++.+++|||.+...  .++.....+..-.+.+  ...
T Consensus       241 --------ddf~q~tVADiPGiI~GAh~nkGlG-~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~  311 (366)
T KOG1489|consen  241 --------DDFSQITVADIPGIIEGAHMNKGLG-YKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLA  311 (366)
T ss_pred             --------cccceeEeccCccccccccccCccc-HHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhc
Confidence                    1223478999999888766654332 34578888999999999998761  1111111110001111  112


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ..|.+||+||+|+.++++  .-++.+.+.++.                 ..++++||++++++++|...+.+
T Consensus       312 ~rp~liVaNKiD~~eae~--~~l~~L~~~lq~-----------------~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  312 DRPALIVANKIDLPEAEK--NLLSSLAKRLQN-----------------PHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             cCceEEEEeccCchhHHH--HHHHHHHHHcCC-----------------CcEEEeeeccccchHHHHHHHhh
Confidence            467899999999875431  112333333321                 25799999999999988876653

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.48  E-value=5.6e-14  Score=115.32  Aligned_cols=158  Identities=23%  Similarity=0.210  Sum_probs=86.8

Q ss_pred             EEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHHHh
Q 022736           37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQ  116 (293)
Q Consensus        37 i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l~~  116 (293)
                      ++|++|||||||+|+|..    .+. .+.+.++++.......+.                                    
T Consensus         1 iiG~~~~GKStll~~l~~----~~~-~~~~~~~~t~~~~~~~~~------------------------------------   39 (176)
T cd01881           1 LVGLPNVGKSTLLNALTN----AKP-KVANYPFTTLEPNLGVVE------------------------------------   39 (176)
T ss_pred             CCCCCCCcHHHHHHHHhc----CCc-cccCCCceeecCcceEEE------------------------------------
Confidence            579999999999999994    333 223333331111111000                                    


Q ss_pred             hcC-CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-----HHHhhhcccCCchHHH--H-----
Q 022736          117 RKE-RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-----FQIDKYRHLSSYPEAI--H-----  183 (293)
Q Consensus       117 ~~~-~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-----~~~~~~~~~~~~~~~~--~-----  183 (293)
                       .. +.++.|+||||+.+.....+.+. .........+|.+++|+|+....     .........  ..+..  .     
T Consensus        40 -~~~~~~~~i~DtpG~~~~~~~~~~~~-~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  115 (176)
T cd01881          40 -VPDGARIQVADIPGLIEGASEGRGLG-NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEIL--NAELKLYDLETIL  115 (176)
T ss_pred             -cCCCCeEEEEeccccchhhhcCCCcc-HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHH--HHHHHHhhhhhHH
Confidence             12 45688999999854322111111 11223345688999999997652     111110000  01111  1     


Q ss_pred             --HHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          184 --QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       184 --qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                        ....|.++|+||+|+.+...    ...........             .....++.+|++++.|++++.+++.
T Consensus       116 ~~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gl~~l~~~l~  173 (176)
T cd01881         116 GLLTAKPVIYVLNKIDLDDAEE----LEEELVRELAL-------------EEGAEVVPISAKTEEGLDELIRAIY  173 (176)
T ss_pred             HHHhhCCeEEEEEchhcCchhH----HHHHHHHHHhc-------------CCCCCEEEEehhhhcCHHHHHHHHH
Confidence              13678999999999986542    12211011110             0124578999999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01889 SelB_euk SelB subfamily

Probab=99.48  E-value=1.1e-13  Score=116.03  Aligned_cols=118  Identities=19%  Similarity=0.210  Sum_probs=70.4

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +..+.++||||...   +.     ..+......+|.+++|+|+..........     ..........+.++++||+|+.
T Consensus        67 ~~~~~i~DtpG~~~---~~-----~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-----~~~~~~~~~~~~iiv~NK~Dl~  133 (192)
T cd01889          67 NLQITLVDCPGHAS---LI-----RTIIGGAQIIDLMLLVVDATKGIQTQTAE-----CLVIGEILCKKLIVVLNKIDLI  133 (192)
T ss_pred             CceEEEEECCCcHH---HH-----HHHHHHHhhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECcccC
Confidence            56789999999732   22     12223345678999999998643221110     1112222356789999999998


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +..+.....+++.+.++......       + ....+++++|+++|+|+++|.+++.+.
T Consensus       134 ~~~~~~~~~~~~~~~l~~~~~~~-------~-~~~~~vi~iSa~~g~gi~~L~~~l~~~  184 (192)
T cd01889         134 PEEERERKIEKMKKKLQKTLEKT-------R-FKNSPIIPVSAKPGGGEAELGKDLNNL  184 (192)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhc-------C-cCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence            64322122344444443221100       0 012357899999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.47  E-value=1.1e-13  Score=131.92  Aligned_cols=156  Identities=18%  Similarity=0.175  Sum_probs=108.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      ..++++|-||+|||||+|+|...    + ..|.|.+|.|+.-..-.+.                                
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~----~-q~VgNwpGvTVEkkeg~~~--------------------------------   46 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGA----N-QKVGNWPGVTVEKKEGKLK--------------------------------   46 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhcc----C-ceecCCCCeeEEEEEEEEE--------------------------------
Confidence            34899999999999999999954    2 2468899963321111111                                


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHH--HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLA--SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~--~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                           ..+.++-++|.||+....+..  +... .+++ ...+.|.+|.|+||++....+.-       .-.+.+++.+.+
T Consensus        47 -----~~~~~i~ivDLPG~YSL~~~S~DE~Va-r~~l-l~~~~D~ivnVvDAtnLeRnLyl-------tlQLlE~g~p~i  112 (653)
T COG0370          47 -----YKGHEIEIVDLPGTYSLTAYSEDEKVA-RDFL-LEGKPDLIVNVVDATNLERNLYL-------TLQLLELGIPMI  112 (653)
T ss_pred             -----ecCceEEEEeCCCcCCCCCCCchHHHH-HHHH-hcCCCCEEEEEcccchHHHHHHH-------HHHHHHcCCCeE
Confidence                 234568899999976533222  2111 1111 23567899999999998876642       234456788999


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +++|++|.......+-+.+++.+.+.                  -++++++|.+|+|.+++...+.+
T Consensus       113 laLNm~D~A~~~Gi~ID~~~L~~~LG------------------vPVv~tvA~~g~G~~~l~~~i~~  161 (653)
T COG0370         113 LALNMIDEAKKRGIRIDIEKLSKLLG------------------VPVVPTVAKRGEGLEELKRAIIE  161 (653)
T ss_pred             EEeccHhhHHhcCCcccHHHHHHHhC------------------CCEEEEEeecCCCHHHHHHHHHH
Confidence            99999998877665566777777774                  45788999999999988877654

>cd00880 Era_like Era (E

Probab=99.46  E-value=1.7e-13  Score=109.48  Aligned_cols=115  Identities=23%  Similarity=0.204  Sum_probs=70.9

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      ..++.++||||+.+........ ..........+|.+++++|+..........     +.....+...+.++|+||+|+.
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~-~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~~  117 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGRER-EELARRVLERADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDLL  117 (163)
T ss_pred             CCcEEEEECCCCCccccchhhH-HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEccccC
Confidence            4678999999987654333210 011112235688999999998765443321     1223344567899999999998


Q ss_pred             CCCCCcchHHHHHH---HHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEK---EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       200 ~~~~~~~~~~~~~~---~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .....    .....   .....             ....+++.+|+.++.|+.++.+++.+
T Consensus       118 ~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~sa~~~~~v~~l~~~l~~  161 (163)
T cd00880         118 PEEEE----EELLELRLLILLL-------------LLGLPVIAVSALTGEGIDELREALIE  161 (163)
T ss_pred             ChhhH----HHHHHHHHhhccc-------------ccCCceEEEeeeccCCHHHHHHHHHh
Confidence            75421    22211   11111             12356788999999999999888754

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK04213 GTP-binding protein; Provisional

Probab=99.46  E-value=2.5e-13  Score=114.47  Aligned_cols=169  Identities=20%  Similarity=0.209  Sum_probs=90.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +.+-++++|.+|+|||||+|+|..    .+. .....+|.    +.....-                             
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~----~~~-~~~~~~~~----t~~~~~~-----------------------------   49 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTG----KKV-RVGKRPGV----TRKPNHY-----------------------------   49 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCce----eeCceEE-----------------------------
Confidence            346789999999999999999984    221 12233342    1110000                             


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCc-------HHHHHhhhcchhhc-cccccccEEEEEcccchHHHHhhhccc------C
Q 022736          111 LEQLVQRKERLDHILLETTGLANP-------APLASVLWLDDQLE-SAVRLDSIITVVDAKNLLFQIDKYRHL------S  176 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~-------~~~~~~~~~~~~~~-~~~~~d~vi~vvDa~~~~~~~~~~~~~------~  176 (293)
                             .. .++.++||||+...       ....+..+ ..++. ....++.+++|+|+..+..........      .
T Consensus        50 -------~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~  120 (201)
T PRK04213         50 -------DW-GDFILTDLPGFGFMSGVPKEVQEKIKDEI-VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDV  120 (201)
T ss_pred             -------ee-cceEEEeCCccccccccCHHHHHHHHHHH-HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHH
Confidence                   01 14789999996321       11111111 11122 334577899999997543211100000      0


Q ss_pred             CchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          177 SYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       177 ~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+...+.....+.++|+||+|+.+..+  ....++.+.+   +-...     .... ...++++||++| |++++.+|+.
T Consensus       121 ~l~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~---~~~~~-----~~~~-~~~~~~~SA~~g-gi~~l~~~l~  188 (201)
T PRK04213        121 EMFDFLRELGIPPIVAVNKMDKIKNRD--EVLDEIAERL---GLYPP-----WRQW-QDIIAPISAKKG-GIEELKEAIR  188 (201)
T ss_pred             HHHHHHHHcCCCeEEEEECccccCcHH--HHHHHHHHHh---cCCcc-----cccc-CCcEEEEecccC-CHHHHHHHHH
Confidence            012223334678999999999875431  1223333222   21000     0000 124789999999 9999999987


Q ss_pred             hh
Q 022736          257 EH  258 (293)
Q Consensus       257 ~~  258 (293)
                      +.
T Consensus       189 ~~  190 (201)
T PRK04213        189 KR  190 (201)
T ss_pred             Hh
Confidence            54

>cd04155 Arl3 Arl3 subfamily

Probab=99.45  E-value=2.7e-13  Score=111.25  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=87.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ..-++++|++|||||||++++...    .........|    .+...+.                               
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~----~~~~~~~t~g----~~~~~i~-------------------------------   54 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE----DISHITPTQG----FNIKTVQ-------------------------------   54 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC----CCcccCCCCC----cceEEEE-------------------------------
Confidence            455889999999999999999843    1111111111    1100000                               


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH---HHHhcc
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQIAFA  188 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~qi~~a  188 (293)
                            ..+.++.++|++|..........        ....++.+++|+|+............   .....   .....|
T Consensus        55 ------~~~~~~~~~D~~G~~~~~~~~~~--------~~~~~~~ii~v~D~~~~~~~~~~~~~---~~~~~~~~~~~~~p  117 (173)
T cd04155          55 ------SDGFKLNVWDIGGQRAIRPYWRN--------YFENTDCLIYVIDSADKKRLEEAGAE---LVELLEEEKLAGVP  117 (173)
T ss_pred             ------ECCEEEEEEECCCCHHHHHHHHH--------HhcCCCEEEEEEeCCCHHHHHHHHHH---HHHHHhChhhcCCC
Confidence                  12356789999996543222211        12456789999999864322111000   01111   122467


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .++++||+|+.+...    ...+.+.++. .   .+.    .  ....++.+|+++|+|++++..|+.
T Consensus       118 ~ivv~nK~D~~~~~~----~~~i~~~l~~-~---~~~----~--~~~~~~~~Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         118 VLVFANKQDLATAAP----AEEIAEALNL-H---DLR----D--RTWHIQACSAKTGEGLQEGMNWVC  171 (173)
T ss_pred             EEEEEECCCCccCCC----HHHHHHHcCC-c---ccC----C--CeEEEEEeECCCCCCHHHHHHHHh
Confidence            889999999876432    2344333321 1   000    0  012457899999999999999985

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04157 Arl6 Arl6 subfamily

Probab=99.44  E-value=3.2e-13  Score=109.40  Aligned_cols=113  Identities=12%  Similarity=0.093  Sum_probs=66.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-----HHhccCEEEEe
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-----QIAFADVVILN  194 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-----qi~~a~iivlN  194 (293)
                      +..+.++||||...........        ...++.+++|+|+............   ......     .-..|.++|+|
T Consensus        44 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~iiv~N  112 (162)
T cd04157          44 NLSFTAFDMSGQGKYRGLWEHY--------YKNIQGIIFVIDSSDRLRLVVVKDE---LELLLNHPDIKHRRVPILFFAN  112 (162)
T ss_pred             CEEEEEEECCCCHhhHHHHHHH--------HccCCEEEEEEeCCcHHHHHHHHHH---HHHHHcCcccccCCCCEEEEEe
Confidence            3457899999976544443322        2468899999999865432110000   011111     12468899999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+|+.+...    ..++...++.    ..+   ..  . ...++.+||++|+|++++..|+.+
T Consensus       113 K~Dl~~~~~----~~~~~~~l~~----~~~---~~--~-~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         113 KMDLPDALT----AVKITQLLGL----ENI---KD--K-PWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             CccccCCCC----HHHHHHHhCC----ccc---cC--c-eEEEEEeeCCCCCchHHHHHHHhc
Confidence            999976431    2333333321    100   00  0 124788999999999999999853

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.44  E-value=2.7e-13  Score=113.35  Aligned_cols=113  Identities=22%  Similarity=0.292  Sum_probs=72.1

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      ....+.||||||..+.   .     .........+|.+|+|||+..........     +.....+...+.++++||+|+
T Consensus        68 ~~~~i~~iDtPG~~~f---~-----~~~~~~~~~~D~ailvVda~~g~~~~~~~-----~l~~~~~~~~p~ivvlNK~D~  134 (188)
T PF00009_consen   68 NNRKITLIDTPGHEDF---I-----KEMIRGLRQADIAILVVDANDGIQPQTEE-----HLKILRELGIPIIVVLNKMDL  134 (188)
T ss_dssp             SSEEEEEEEESSSHHH---H-----HHHHHHHTTSSEEEEEEETTTBSTHHHHH-----HHHHHHHTT-SEEEEEETCTS
T ss_pred             cccceeecccccccce---e-----ecccceecccccceeeeeccccccccccc-----ccccccccccceEEeeeeccc
Confidence            4567899999996432   1     11233456789999999998654433221     344556677889999999999


Q ss_pred             CCCCCCcchHHHHHHHHH-----hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIH-----EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~-----~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ...     .+.+..+.++     .+.-.-         -...+++++|+.+|.|++.|.+.+.++
T Consensus       135 ~~~-----~~~~~~~~~~~~l~~~~~~~~---------~~~~~vi~~Sa~~g~gi~~Ll~~l~~~  185 (188)
T PF00009_consen  135 IEK-----ELEEIIEEIKEKLLKEYGENG---------EEIVPVIPISALTGDGIDELLEALVEL  185 (188)
T ss_dssp             SHH-----HHHHHHHHHHHHHHHHTTSTT---------TSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             hhh-----hHHHHHHHHHHHhccccccCc---------cccceEEEEecCCCCCHHHHHHHHHHh
Confidence            832     2333333332     221100         012468899999999999999888654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01890 LepA LepA subfamily

Probab=99.44  E-value=2.1e-12  Score=106.54  Aligned_cols=110  Identities=19%  Similarity=0.152  Sum_probs=67.0

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +..+.|+||||..+.......        ....+|++++|+|+..........     ......+...+.++|+||+|+.
T Consensus        66 ~~~~~l~Dt~G~~~~~~~~~~--------~~~~ad~~i~v~D~~~~~~~~~~~-----~~~~~~~~~~~iiiv~NK~Dl~  132 (179)
T cd01890          66 EYLLNLIDTPGHVDFSYEVSR--------SLAACEGALLLVDATQGVEAQTLA-----NFYLALENNLEIIPVINKIDLP  132 (179)
T ss_pred             cEEEEEEECCCChhhHHHHHH--------HHHhcCeEEEEEECCCCccHhhHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence            456789999998765443322        224688999999997643221110     0111222356789999999986


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +..     .....+.+.....           .+...++.+|+++|+|++++..++...
T Consensus       133 ~~~-----~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (179)
T cd01890         133 SAD-----PERVKQQIEDVLG-----------LDPSEAILVSAKTGLGVEDLLEAIVER  175 (179)
T ss_pred             cCC-----HHHHHHHHHHHhC-----------CCcccEEEeeccCCCCHHHHHHHHHhh
Confidence            532     1222223322211           112357899999999999999988654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04151 Arl1 Arl1 subfamily

Probab=99.44  E-value=4.4e-13  Score=108.52  Aligned_cols=112  Identities=15%  Similarity=0.067  Sum_probs=66.2

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~  196 (293)
                      +..+.++||||..........+        ...++.+++|+|+...........   .+...+.+   -..|.++|+||+
T Consensus        42 ~~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~piiiv~nK~  110 (158)
T cd04151          42 NLKFQVWDLGGQTSIRPYWRCY--------YSNTDAIIYVVDSTDRDRLGTAKE---ELHAMLEEEELKGAVLLVFANKQ  110 (158)
T ss_pred             CEEEEEEECCCCHHHHHHHHHH--------hcCCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhcCCcEEEEEeCC
Confidence            3467899999986544433222        246888999999986532211100   01111111   146899999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+.+..    ...++...+......        . . ..+++++|+++|.|++++.+|+.
T Consensus       111 Dl~~~~----~~~~i~~~~~~~~~~--------~-~-~~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         111 DMPGAL----SEAEISEKLGLSELK--------D-R-TWSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             CCCCCC----CHHHHHHHhCccccC--------C-C-cEEEEEeeccCCCCHHHHHHHHh
Confidence            987543    123343333211100        0 0 12478999999999999998875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.44  E-value=5.9e-13  Score=106.21  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=63.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      ..+.++||||..+......... ..........|.++.|+|+..........     ......+ ..+.++++||+|+..
T Consensus        50 ~~~~~~D~~G~~~~~~~~~~~~-~~~~~~i~~~d~~~~v~~~~~~~~~~~~~-----~~~~~~~-~~p~ivv~nK~D~~~  122 (161)
T TIGR00231        50 YKFNLLDTAGQEDYRAIRRLYY-RAVESSLRVFDIVILVLDVEEILEKQTKE-----IIHHAES-NVPIILVGNKIDLRD  122 (161)
T ss_pred             EEEEEEECCCcccchHHHHHHH-hhhhEEEEEEEEeeeehhhhhHhHHHHHH-----HHHhccc-CCcEEEEEEcccCCc
Confidence            4578999999665544433222 22222334455555555554433211110     1111122 568999999999976


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      ..    ...+..+.+..++.              ..++++|+.++.|++++.+++.
T Consensus       123 ~~----~~~~~~~~~~~~~~--------------~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       123 AK----LKTHVAFLFAKLNG--------------EPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             ch----hhHHHHHHHhhccC--------------CceEEeecCCCCCHHHHHHHhh
Confidence            42    12333333433321              3478999999999999988874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.43  E-value=6.6e-13  Score=107.44  Aligned_cols=112  Identities=14%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.++||||...........        ....+.+++|+|+.+.........   .+...+..   -..|.++|+||+|
T Consensus        44 ~~l~i~D~~G~~~~~~~~~~~--------~~~~~~iv~v~D~~~~~~~~~~~~---~~~~~~~~~~~~~~piilv~nK~D  112 (160)
T cd04156          44 LSLTVWDVGGQEKMRTVWKCY--------LENTDGLVYVVDSSDEARLDESQK---ELKHILKNEHIKGVPVVLLANKQD  112 (160)
T ss_pred             eEEEEEECCCCHhHHHHHHHH--------hccCCEEEEEEECCcHHHHHHHHH---HHHHHHhchhhcCCCEEEEEECcc
Confidence            457899999976433332211        245788999999987542211100   01112211   2468899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +....    ...++...++. ..   .   ...  ....++.+||++|+|++++..++.
T Consensus       113 l~~~~----~~~~i~~~~~~-~~---~---~~~--~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         113 LPGAL----TAEEITRRFKL-KK---Y---CSD--RDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             cccCc----CHHHHHHHcCC-cc---c---CCC--CcEEEEecccccCCChHHHHHHHh
Confidence            86432    12333333320 00   0   000  012478899999999999988774

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.43  E-value=9.6e-13  Score=106.96  Aligned_cols=104  Identities=14%  Similarity=0.181  Sum_probs=64.8

Q ss_pred             EEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-HHhccCEEEEeCCCCCCCCC
Q 022736          125 LLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVVILNKVDLVSPER  203 (293)
Q Consensus       125 iidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-qi~~a~iivlNK~D~~~~~~  203 (293)
                      +|||||.....+-..    .........+|.+++|+|+........        ..... ....+.++++||+|+.+.+ 
T Consensus        41 ~iDtpG~~~~~~~~~----~~~~~~~~~ad~il~v~d~~~~~s~~~--------~~~~~~~~~~~ii~v~nK~Dl~~~~-  107 (158)
T PRK15467         41 DIDTPGEYFSHPRWY----HALITTLQDVDMLIYVHGANDPESRLP--------AGLLDIGVSKRQIAVISKTDMPDAD-  107 (158)
T ss_pred             cccCCccccCCHHHH----HHHHHHHhcCCEEEEEEeCCCcccccC--------HHHHhccCCCCeEEEEEccccCccc-
Confidence            699999644322111    111223467899999999985532211        11111 1235789999999986532 


Q ss_pred             CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          204 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       204 ~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                          ...+.+.++.....             .+++.+|+++|+|++++..++.+.
T Consensus       108 ----~~~~~~~~~~~~~~-------------~p~~~~Sa~~g~gi~~l~~~l~~~  145 (158)
T PRK15467        108 ----VAATRKLLLETGFE-------------EPIFELNSHDPQSVQQLVDYLASL  145 (158)
T ss_pred             ----HHHHHHHHHHcCCC-------------CCEEEEECCCccCHHHHHHHHHHh
Confidence                35555555543211             367889999999999999888654

>cd01861 Rab6 Rab6 subfamily

Probab=99.42  E-value=1.3e-12  Score=105.79  Aligned_cols=108  Identities=19%  Similarity=0.133  Sum_probs=64.7

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLV  199 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D~~  199 (293)
                      .+.++||||..........+        ...++.+++|+|........... ..  +.....+..  .|.++++||+|+.
T Consensus        50 ~l~~~D~~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~~~~~-~~--~~~~~~~~~~~~~iilv~nK~D~~  118 (161)
T cd01861          50 RLQLWDTAGQERFRSLIPSY--------IRDSSVAVVVYDITNRQSFDNTD-KW--IDDVRDERGNDVIIVLVGNKTDLS  118 (161)
T ss_pred             EEEEEECCCcHHHHHHHHHH--------hccCCEEEEEEECcCHHHHHHHH-HH--HHHHHHhCCCCCEEEEEEEChhcc
Confidence            47899999965443333222        24578899999998654322110 00  111222222  6789999999996


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +..+  ...++.....+..+               ..++.+|+.++.|++++..++.+
T Consensus       119 ~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861         119 DKRQ--VSTEEGEKKAKELN---------------AMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             ccCc--cCHHHHHHHHHHhC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            5432  12333333333322               23577999999999999988754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.42  E-value=4.9e-13  Score=102.81  Aligned_cols=114  Identities=29%  Similarity=0.306  Sum_probs=69.5

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+|+|.+|||||||+|+|+    +.+.+.+.+.++++.......             ..                     
T Consensus         2 V~iiG~~~~GKSTlin~l~----~~~~~~~~~~~~~T~~~~~~~-------------~~---------------------   43 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALT----GKKLAKVSNIPGTTRDPVYGQ-------------FE---------------------   43 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHH----TSTSSEESSSTTSSSSEEEEE-------------EE---------------------
T ss_pred             EEEECCCCCCHHHHHHHHh----ccccccccccccceeeeeeee-------------ee---------------------
Confidence            6889999999999999999    444455666666522221100             00                     


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHh-hhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEE
Q 022736          115 VQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL  193 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~-~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivl  193 (293)
                         ..+..+.|+||||+.+....... -.....+.....+|.+++|+|+..........     +...++ -..+.++|+
T Consensus        44 ---~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~-----~~~~l~-~~~~~i~v~  114 (116)
T PF01926_consen   44 ---YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKN-----ILRELK-NKKPIILVL  114 (116)
T ss_dssp             ---ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHH-----HHHHHH-TTSEEEEEE
T ss_pred             ---eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-----HHHHHh-cCCCEEEEE
Confidence               12345789999998875433321 11223445557789999999987732211110     122222 456789999


Q ss_pred             eC
Q 022736          194 NK  195 (293)
Q Consensus       194 NK  195 (293)
                      ||
T Consensus       115 NK  116 (116)
T PF01926_consen  115 NK  116 (116)
T ss_dssp             ES
T ss_pred             cC
Confidence            98

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.41  E-value=3.1e-13  Score=131.11  Aligned_cols=152  Identities=19%  Similarity=0.187  Sum_probs=90.3

Q ss_pred             ecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHHHhhc
Q 022736           39 GFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRK  118 (293)
Q Consensus        39 G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l~~~~  118 (293)
                      |.+|+|||||+|+|..    .+. .+.+.+|.+.......+.                                     .
T Consensus         1 G~pNvGKSSL~N~Ltg----~~~-~v~n~pG~Tv~~~~~~i~-------------------------------------~   38 (591)
T TIGR00437         1 GNPNVGKSTLFNALTG----ANQ-TVGNWPGVTVEKKEGKLG-------------------------------------F   38 (591)
T ss_pred             CCCCCCHHHHHHHHhC----CCC-eecCCCCeEEEEEEEEEE-------------------------------------E
Confidence            8899999999999994    332 456777753222111111                                     1


Q ss_pred             CCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D  197 (293)
                      ++.++.++||||..+..... +......++ .....|.++.|+|+++....+..       .....+.+.+.++++||+|
T Consensus        39 ~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l-~~~~aDvvI~VvDat~ler~l~l-------~~ql~~~~~PiIIVlNK~D  110 (591)
T TIGR00437        39 QGEDIEIVDLPGIYSLTTFSLEEEVARDYL-LNEKPDLVVNVVDASNLERNLYL-------TLQLLELGIPMILALNLVD  110 (591)
T ss_pred             CCeEEEEEECCCccccCccchHHHHHHHHH-hhcCCCEEEEEecCCcchhhHHH-------HHHHHhcCCCEEEEEehhH
Confidence            22357899999976543221 001111111 12367999999999875433221       1122334678999999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+......+.    +.+.+..             + .+++++||++|+|++++.+++.+.
T Consensus       111 l~~~~~i~~d~----~~L~~~l-------------g-~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437       111 EAEKKGIRIDE----EKLEERL-------------G-VPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             HHHhCCChhhH----HHHHHHc-------------C-CCEEEEECCCCCCHHHHHHHHHHH
Confidence            87544321111    2222211             1 246889999999999999888643

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd00879 Sar1 Sar1 subfamily

Probab=99.41  E-value=6.3e-13  Score=110.95  Aligned_cols=122  Identities=15%  Similarity=0.116  Sum_probs=68.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~D  197 (293)
                      ..+.++|+||..........        .....+.+++|+|+...........   .+.....   ....|.++++||+|
T Consensus        63 ~~~~l~D~~G~~~~~~~~~~--------~~~~ad~iilV~D~~~~~s~~~~~~---~~~~i~~~~~~~~~pvivv~NK~D  131 (190)
T cd00879          63 IKFKTFDLGGHEQARRLWKD--------YFPEVDGIVFLVDAADPERFQESKE---ELDSLLSDEELANVPFLILGNKID  131 (190)
T ss_pred             EEEEEEECCCCHHHHHHHHH--------HhccCCEEEEEEECCcHHHHHHHHH---HHHHHHcCccccCCCEEEEEeCCC
Confidence            45779999996543322221        1245688999999976432111100   0111111   12367899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCC-EEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLA-HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a-~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +....    ..+++++.++...... +++...........++.+||++|+|++++.+|+.+
T Consensus       132 l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~  188 (190)
T cd00879         132 LPGAV----SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ  188 (190)
T ss_pred             CCCCc----CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence            86532    3466666665322110 01111011111235789999999999999999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.41  E-value=8.3e-13  Score=106.71  Aligned_cols=112  Identities=17%  Similarity=0.152  Sum_probs=67.1

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~  196 (293)
                      ..++.++||||..........+.        ...+.+++|+|+............   +.....   .-..+.++++||+
T Consensus        42 ~~~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~D~~~~~~~~~~~~~---~~~~~~~~~~~~~piiiv~nK~  110 (158)
T cd00878          42 NVSFTVWDVGGQDKIRPLWKHYY--------ENTNGIIFVVDSSDRERIEEAKEE---LHKLLNEEELKGVPLLIFANKQ  110 (158)
T ss_pred             CEEEEEEECCCChhhHHHHHHHh--------ccCCEEEEEEECCCHHHHHHHHHH---HHHHHhCcccCCCcEEEEeecc
Confidence            35688999999755433332221        356889999999865321111000   111111   1245789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+....    ..+++.+.++......          ...+++.+|+++|.|++++..++.
T Consensus       111 D~~~~~----~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878         111 DLPGAL----SVSELIEKLGLEKILG----------RRWHIQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             CCcccc----CHHHHHHhhChhhccC----------CcEEEEEeeCCCCCCHHHHHHHHh
Confidence            988643    2455555554332110          113578899999999999988774

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04149 Arf6 Arf6 subfamily

Probab=99.41  E-value=9.3e-13  Score=108.06  Aligned_cols=111  Identities=16%  Similarity=0.071  Sum_probs=65.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.++||+|..........+        ...++++|+|+|+.+.........   .+.+.+..   -..+.++|.||+|
T Consensus        53 ~~~~l~Dt~G~~~~~~~~~~~--------~~~a~~ii~v~D~t~~~s~~~~~~---~~~~~~~~~~~~~~piilv~NK~D  121 (168)
T cd04149          53 VKFNVWDVGGQDKIRPLWRHY--------YTGTQGLIFVVDSADRDRIDEARQ---ELHRIINDREMRDALLLVFANKQD  121 (168)
T ss_pred             EEEEEEECCCCHHHHHHHHHH--------hccCCEEEEEEeCCchhhHHHHHH---HHHHHhcCHhhcCCcEEEEEECcC
Confidence            457899999986544443222        246789999999987432211100   01122211   1357899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.+..    ..+++...++...    .    . .. ...++++||++|+|++++..||.
T Consensus       122 l~~~~----~~~~i~~~~~~~~----~----~-~~-~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         122 LPDAM----KPHEIQEKLGLTR----I----R-DR-NWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             CccCC----CHHHHHHHcCCCc----c----C-CC-cEEEEEeeCCCCCChHHHHHHHh
Confidence            86432    2344444432110    0    0 00 12467899999999999999885

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.41  E-value=1.9e-12  Score=111.11  Aligned_cols=126  Identities=13%  Similarity=0.122  Sum_probs=74.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccc--cccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV  196 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~--~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~  196 (293)
                      .+..+.+|||||....   ...     .....  ...|.+++|+|+.......+..     +..++...+.+.++++||+
T Consensus        82 ~~~~i~liDtpG~~~~---~~~-----~~~~~~~~~~D~~llVvda~~g~~~~d~~-----~l~~l~~~~ip~ivvvNK~  148 (224)
T cd04165          82 SSKLVTFIDLAGHERY---LKT-----TLFGLTGYAPDYAMLVVAANAGIIGMTKE-----HLGLALALNIPVFVVVTKI  148 (224)
T ss_pred             CCcEEEEEECCCcHHH---HHH-----HHHhhcccCCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEECc
Confidence            3566889999996432   111     11122  3578899999997654433321     3445566778899999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCC-CE--------EEE-eecC-CCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSL-AH--------VIR-SVRC-QVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~-a~--------i~~-~~~~-~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+++.++....+.++.+.++..... .+        +.. +... .-...++|.+|+.+|+|++.|..+|..
T Consensus       149 D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         149 DLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             cccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            9987543323333444444321100 00        000 0001 112347889999999999999988854

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01864 Rab19 Rab19 subfamily

Probab=99.41  E-value=1.4e-12  Score=106.19  Aligned_cols=109  Identities=15%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      .++.|+||||..........        ....+|++++++|+.+........    .+...+.+.   ..|.++|.||+|
T Consensus        52 ~~l~i~D~~G~~~~~~~~~~--------~~~~~d~~llv~d~~~~~s~~~~~----~~~~~i~~~~~~~~p~ivv~nK~D  119 (165)
T cd01864          52 VKLQIWDTAGQERFRTITQS--------YYRSANGAIIAYDITRRSSFESVP----HWIEEVEKYGASNVVLLLIGNKCD  119 (165)
T ss_pred             EEEEEEECCChHHHHHHHHH--------HhccCCEEEEEEECcCHHHHHhHH----HHHHHHHHhCCCCCcEEEEEECcc
Confidence            45789999995432222211        124578999999998765432110    012222221   345789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  .........+...              ...++.+|+++|.|++++..++..
T Consensus       120 l~~~~~~--~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~~~~l~~  163 (165)
T cd01864         120 LEEQREV--LFEEACTLAEKNG--------------MLAVLETSAKESQNVEEAFLLMAT  163 (165)
T ss_pred             ccccccc--CHHHHHHHHHHcC--------------CcEEEEEECCCCCCHHHHHHHHHH
Confidence            9765421  2334444333221              134678999999999998887753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01863 Rab18 Rab18 subfamily

Probab=99.41  E-value=6.7e-13  Score=107.53  Aligned_cols=106  Identities=16%  Similarity=0.076  Sum_probs=63.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH----HHhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH----QIAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~----qi~~a~iivlNK~  196 (293)
                      .++.++||||...........        ...+|.+++|+|........... .   +...+.    .-..+.++|.||+
T Consensus        49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~-~---~~~~i~~~~~~~~~~~~iv~nK~  116 (161)
T cd01863          49 VKLAIWDTAGQERFRTLTSSY--------YRGAQGVILVYDVTRRDTFTNLE-T---WLNELETYSTNNDIVKMLVGNKI  116 (161)
T ss_pred             EEEEEEECCCchhhhhhhHHH--------hCCCCEEEEEEECCCHHHHHhHH-H---HHHHHHHhCCCCCCcEEEEEECC
Confidence            457899999965433222211        24578999999998654422210 0   111111    1234579999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+.....   ..+......+..+               ..++.+|+++|.|++++.+++.
T Consensus       117 D~~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863         117 DKENREV---TREEGLKFARKHN---------------MLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ccccccc---CHHHHHHHHHHcC---------------CEEEEEecCCCCCHHHHHHHHH
Confidence            9974432   3344444444321               2368899999999998887764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01865 Rab3 Rab3 subfamily

Probab=99.40  E-value=1.6e-12  Score=106.04  Aligned_cols=108  Identities=13%  Similarity=0.099  Sum_probs=64.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||+|..........        .....+++++|+|........ ...   .+...+.+.   ..+.++|.||+|
T Consensus        50 ~~~~l~Dt~g~~~~~~~~~~--------~~~~~~~~l~v~d~~~~~s~~-~~~---~~~~~i~~~~~~~~piivv~nK~D  117 (165)
T cd01865          50 VKLQIWDTAGQERYRTITTA--------YYRGAMGFILMYDITNEESFN-AVQ---DWSTQIKTYSWDNAQVILVGNKCD  117 (165)
T ss_pred             EEEEEEECCChHHHHHHHHH--------HccCCcEEEEEEECCCHHHHH-HHH---HHHHHHHHhCCCCCCEEEEEECcc
Confidence            45789999996543333221        225688899999987653322 111   112222222   245799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+....  ..+...+..+.++               -.++.+||++|.|++++.+++..
T Consensus       118 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865         118 MEDERVV--SSERGRQLADQLG---------------FEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             cCccccc--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHH
Confidence            9765421  2233333333221               13678999999999999888754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04158 ARD1 ARD1 subfamily

Probab=99.40  E-value=1.1e-12  Score=107.56  Aligned_cols=115  Identities=14%  Similarity=0.148  Sum_probs=67.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~  196 (293)
                      +..+.++||||...........        ....|++++|+|++..........   .+....++.   ..+.+++.||+
T Consensus        42 ~~~i~l~Dt~G~~~~~~~~~~~--------~~~ad~ii~V~D~s~~~s~~~~~~---~~~~~~~~~~~~~~piilv~NK~  110 (169)
T cd04158          42 NLKFTIWDVGGKHKLRPLWKHY--------YLNTQAVVFVVDSSHRDRVSEAHS---ELAKLLTEKELRDALLLIFANKQ  110 (169)
T ss_pred             CEEEEEEECCCChhcchHHHHH--------hccCCEEEEEEeCCcHHHHHHHHH---HHHHHhcChhhCCCCEEEEEeCc
Confidence            4567899999976554443222        245789999999976532211100   011222221   25788999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+....    ..+++.+.++ ++...        ......++.+||++|.|++++..|+.+.
T Consensus       111 Dl~~~~----~~~~~~~~~~-~~~~~--------~~~~~~~~~~Sa~~g~gv~~~f~~l~~~  159 (169)
T cd04158         111 DVAGAL----SVEEMTELLS-LHKLC--------CGRSWYIQGCDARSGMGLYEGLDWLSRQ  159 (169)
T ss_pred             CcccCC----CHHHHHHHhC-Ccccc--------CCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence            986432    2344444442 21100        0001246788999999999999998653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.40  E-value=3e-12  Score=106.50  Aligned_cols=117  Identities=20%  Similarity=0.143  Sum_probs=65.8

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +..+.++||+|..........+        ...+|++++|+|++...........+..+.........|.++|+||+|+.
T Consensus        51 ~~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~  122 (183)
T cd04152          51 GITFHFWDVGGQEKLRPLWKSY--------TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP  122 (183)
T ss_pred             ceEEEEEECCCcHhHHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence            3457899999975443333222        24588899999998753321110000001111122346889999999986


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +..    ..+.+...+. ++...        ......++++||++|+|++++..++.+
T Consensus       123 ~~~----~~~~~~~~~~-~~~~~--------~~~~~~~~~~SA~~~~gi~~l~~~l~~  167 (183)
T cd04152         123 NAL----SVSEVEKLLA-LHELS--------ASTPWHVQPACAIIGEGLQEGLEKLYE  167 (183)
T ss_pred             ccC----CHHHHHHHhC-ccccC--------CCCceEEEEeecccCCCHHHHHHHHHH
Confidence            432    1233333332 11100        001124678999999999999888753

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.39  E-value=9.8e-13  Score=108.46  Aligned_cols=112  Identities=13%  Similarity=0.120  Sum_probs=64.8

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~  196 (293)
                      +..+.++||||..........        ....+|++++|+|++...........   ....+..   ...|.++++||+
T Consensus        58 ~~~~~l~D~~G~~~~~~~~~~--------~~~~~d~vi~V~D~s~~~~~~~~~~~---l~~~~~~~~~~~~p~viv~NK~  126 (174)
T cd04153          58 NIRFLMWDIGGQESLRSSWNT--------YYTNTDAVILVIDSTDRERLPLTKEE---LYKMLAHEDLRKAVLLVLANKQ  126 (174)
T ss_pred             CeEEEEEECCCCHHHHHHHHH--------HhhcCCEEEEEEECCCHHHHHHHHHH---HHHHHhchhhcCCCEEEEEECC
Confidence            356889999997543322221        12467899999999865322111000   1111111   135779999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+.+..    ...++.+.+....     ..  .  .. ..++++||.+|+|++++..||.
T Consensus       127 Dl~~~~----~~~~i~~~l~~~~-----~~--~--~~-~~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         127 DLKGAM----TPAEISESLGLTS-----IR--D--HT-WHIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             CCCCCC----CHHHHHHHhCccc-----cc--C--Cc-eEEEecccCCCCCHHHHHHHHh
Confidence            986532    2234444332110     00  0  01 1468999999999999999885

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.39  E-value=1.1e-12  Score=110.23  Aligned_cols=109  Identities=23%  Similarity=0.228  Sum_probs=62.6

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D  197 (293)
                      .+.++.||||||..+   +.     .........+|.+++|+|+.........     .+...+.+.+.+ .++++||+|
T Consensus        63 ~~~~i~~iDtPG~~~---~~-----~~~~~~~~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~~~iIvviNK~D  129 (195)
T cd01884          63 ANRHYAHVDCPGHAD---YI-----KNMITGAAQMDGAILVVSATDGPMPQTR-----EHLLLARQVGVPYIVVFLNKAD  129 (195)
T ss_pred             CCeEEEEEECcCHHH---HH-----HHHHHHhhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCcEEEEEeCCC
Confidence            356789999999753   11     2224455679999999999765432221     123344455555 568899999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT  249 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~  249 (293)
                      +++.++   ..+.+.+.++.+-.....   .   ....+++++||++|.+..
T Consensus       130 ~~~~~~---~~~~~~~~i~~~l~~~g~---~---~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         130 MVDDEE---LLELVEMEVRELLSKYGF---D---GDNTPIVRGSALKALEGD  172 (195)
T ss_pred             CCCcHH---HHHHHHHHHHHHHHHhcc---c---ccCCeEEEeeCccccCCC
Confidence            975332   223333333332111100   0   012457889999998753

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.39  E-value=9.1e-13  Score=110.62  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      ++..+.++||||..+.......        ....+|.+++|+|+..........     +.....+...+.++++||+|+
T Consensus        63 ~~~~~~l~DtpG~~~~~~~~~~--------~~~~~d~~ilV~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~NK~Dl  129 (194)
T cd01891          63 KDTKINIVDTPGHADFGGEVER--------VLSMVDGVLLLVDASEGPMPQTRF-----VLKKALELGLKPIVVINKIDR  129 (194)
T ss_pred             CCEEEEEEECCCcHHHHHHHHH--------HHHhcCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECCCC
Confidence            3456889999998654433322        225678999999997632111110     112223446788999999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGL  254 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~  254 (293)
                      ..... ....+++.+.+..+...       .+..+ .+++.+||++|.|..++..|
T Consensus       130 ~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~-~~iv~~Sa~~g~~~~~~~~~  176 (194)
T cd01891         130 PDARP-EEVVDEVFDLFIELGAT-------EEQLD-FPVLYASAKNGWASLNLEDP  176 (194)
T ss_pred             CCCCH-HHHHHHHHHHHHHhCCc-------cccCc-cCEEEeehhccccccccccc
Confidence            75321 01223333333322211       01112 35788999999888665443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.39  E-value=1.5e-12  Score=105.67  Aligned_cols=108  Identities=15%  Similarity=0.127  Sum_probs=65.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~  196 (293)
                      ..+.++||||..+...+.....        ...+.+++|+|..+...... ...   +...+.+.    ..|.+++.||+
T Consensus        50 ~~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~piiiv~NK~  117 (164)
T cd04145          50 AILDILDTAGQEEFSAMREQYM--------RTGEGFLLVFSVTDRGSFEE-VDK---FHTQILRVKDRDEFPMILVGNKA  117 (164)
T ss_pred             EEEEEEECCCCcchhHHHHHHH--------hhCCEEEEEEECCCHHHHHH-HHH---HHHHHHHHhCCCCCCEEEEeeCc
Confidence            3467899999776554443222        35788999999987543211 110   11122221    35789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+....  ...+..+..+..+               ..++.+||++|.|++++..++..
T Consensus       118 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~  161 (164)
T cd04145         118 DLEHQRKV--SREEGQELARKLK---------------IPYIETSAKDRLNVDKAFHDLVR  161 (164)
T ss_pred             ccccccee--cHHHHHHHHHHcC---------------CcEEEeeCCCCCCHHHHHHHHHH
Confidence            98764321  2233333333221               24688999999999998877743

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.39  E-value=1.2e-12  Score=104.92  Aligned_cols=112  Identities=15%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~D  197 (293)
                      ..+.++||||..........+        ....+.+++|+|+............   +.....   ....|.++|+||+|
T Consensus        44 ~~~~~~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~p~iiv~nK~D  112 (159)
T cd04159          44 VTLKVWDLGGQPRFRSMWERY--------CRGVNAIVYVVDAADRTALEAAKNE---LHDLLEKPSLEGIPLLVLGNKND  112 (159)
T ss_pred             EEEEEEECCCCHhHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHHHH---HHHHHcChhhcCCCEEEEEeCcc
Confidence            457899999975544333222        2457889999999865432211000   011111   12357899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+...    ...+...+.. ...      ..   ....++.+|+++|.|++++..|+.+
T Consensus       113 ~~~~~~----~~~~~~~~~~-~~~------~~---~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         113 LPGALS----VDELIEQMNL-KSI------TD---REVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             ccCCcC----HHHHHHHhCc-ccc------cC---CceEEEEEEeccCCChHHHHHHHhh
Confidence            876532    2222222210 000      00   1124678999999999999888753

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=3.7e-13  Score=123.26  Aligned_cols=170  Identities=22%  Similarity=0.176  Sum_probs=105.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      +-++|+|+||+|||||+|+|.    ...++||+..+|+    +++.+..         .+.                   
T Consensus       269 l~iaIvGrPNvGKSSLlNaL~----~~drsIVSpv~GT----TRDaiea---------~v~-------------------  312 (531)
T KOG1191|consen  269 LQIAIVGRPNVGKSSLLNALS----REDRSIVSPVPGT----TRDAIEA---------QVT-------------------  312 (531)
T ss_pred             CeEEEEcCCCCCHHHHHHHHh----cCCceEeCCCCCc----chhhhee---------Eee-------------------
Confidence            568889999999999999999    6778999999998    3333321         111                   


Q ss_pred             HHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccc--hHHHHhhhcccC-----CchHHHHH
Q 022736          113 QLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLS-----SYPEAIHQ  184 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~--~~~~~~~~~~~~-----~~~~~~~q  184 (293)
                           -+++.+.++||+|+-+ .....+.+....+.+...+.|++++|+|+..  ....+.....+.     ........
T Consensus       313 -----~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~  387 (531)
T KOG1191|consen  313 -----VNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM  387 (531)
T ss_pred             -----cCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence                 2567899999999887 4445555556666777889999999999943  222111000000     00000011


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEE-eecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR-SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~-~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ..++.+++.||+|+...-.      ++        +..++.. ...+.-.+..+..+|+.+++|.++|.+.+.+
T Consensus       388 ~~~~~i~~~nk~D~~s~~~------~~--------~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~  447 (531)
T KOG1191|consen  388 EKQRIILVANKSDLVSKIP------EM--------TKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN  447 (531)
T ss_pred             cccceEEEechhhccCccc------cc--------cCCceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence            3357789999999887521      00        1222211 1112112233344899999999988876643

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.39  E-value=1.8e-12  Score=104.94  Aligned_cols=109  Identities=13%  Similarity=0.076  Sum_probs=64.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.++||||...........        ....+.+++++|.......... ...  +..+...   ...|.++|+||+|
T Consensus        48 ~~~~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-~~~--~~~~~~~~~~~~~piiiv~NK~D  116 (164)
T cd04139          48 VQLNILDTAGQEDYAAIRDNY--------HRSGEGFLLVFSITDMESFTAT-AEF--REQILRVKDDDNVPLLLVGNKCD  116 (164)
T ss_pred             EEEEEEECCChhhhhHHHHHH--------hhcCCEEEEEEECCCHHHHHHH-HHH--HHHHHHhcCCCCCCEEEEEEccc
Confidence            457899999976544433222        1345778888887654321110 000  1112222   3568899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+  .......+..+.++               .+++.+|+++++|++++..++.+
T Consensus       117 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139         117 LEDKRQ--VSSEEAANLARQWG---------------VPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             cccccc--cCHHHHHHHHHHhC---------------CeEEEeeCCCCCCHHHHHHHHHH
Confidence            976321  12333344443332               24678999999999999888754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00154 Rab Rab family

Probab=99.39  E-value=2e-12  Score=103.55  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=66.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      .++.++|+||..........+        ...+|.+++|+|+........ ..   .+...+.+.   ..+.++++||+|
T Consensus        49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~-~~---~~~~~~~~~~~~~~p~ivv~nK~D  116 (159)
T cd00154          49 VKLQIWDTAGQERFRSITPSY--------YRGAHGAILVYDITNRESFEN-LD---KWLKELKEYAPENIPIILVGNKID  116 (159)
T ss_pred             EEEEEEecCChHHHHHHHHHH--------hcCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhCCCCCcEEEEEEccc
Confidence            467899999975443333222        245789999999987432211 11   122223332   368899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +..+.+  ...+.+++..+..+               ..++.+|+.++.|++++..++.
T Consensus       117 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         117 LEDQRQ--VSTEEAQQFAKENG---------------LLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             cccccc--ccHHHHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHh
Confidence            973332  23344444444311               3468899999999999988764

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.39  E-value=9e-13  Score=123.69  Aligned_cols=122  Identities=24%  Similarity=0.260  Sum_probs=75.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .-++++|.+|+|||||+|+|+    +...+++...+|++..    .+..         .+.                   
T Consensus       204 ~kVvIvG~~nvGKSSLiN~L~----~~~~aivs~~pgtTrd----~~~~---------~i~-------------------  247 (442)
T TIGR00450       204 FKLAIVGSPNVGKSSLLNALL----KQDRAIVSDIKGTTRD----VVEG---------DFE-------------------  247 (442)
T ss_pred             CEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCcEEE----EEEE---------EEE-------------------
Confidence            347789999999999999999    4555666777776322    1110         000                   


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI  192 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv  192 (293)
                           .++..+.++||||+.+.....+.............+|.+++|+|++........      +.........+.++|
T Consensus       248 -----~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~------~l~~~~~~~~piIlV  316 (442)
T TIGR00450       248 -----LNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF------LIIDLNKSKKPFILV  316 (442)
T ss_pred             -----ECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH------HHHHHhhCCCCEEEE
Confidence                 123446899999987655443322222233444678999999999764322110      111122225678999


Q ss_pred             EeCCCCCCC
Q 022736          193 LNKVDLVSP  201 (293)
Q Consensus       193 lNK~D~~~~  201 (293)
                      +||+|+.+.
T Consensus       317 ~NK~Dl~~~  325 (442)
T TIGR00450       317 LNKIDLKIN  325 (442)
T ss_pred             EECccCCCc
Confidence            999998643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.38  E-value=1.3e-12  Score=106.07  Aligned_cols=108  Identities=17%  Similarity=0.069  Sum_probs=65.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~  196 (293)
                      ..+.++||||..+.......++        ...+.+++|+|+......... .   .+...+.+    ...|.++|.||+
T Consensus        48 ~~l~i~Dt~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~pii~v~nK~  115 (164)
T smart00173       48 CLLDILDTAGQEEFSAMRDQYM--------RTGEGFLLVYSITDRQSFEEI-K---KFREQILRVKDRDDVPIVLVGNKC  115 (164)
T ss_pred             EEEEEEECCCcccchHHHHHHH--------hhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCCEEEEEECc
Confidence            3467899999876554443222        457889999998764332111 0   01111111    135778999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+...  ..........+..+               ..++.+||+++.|++++.+++.+
T Consensus       116 Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173      116 DLESERV--VSTEEGKELARQWG---------------CPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             cccccce--EcHHHHHHHHHHcC---------------CEEEEeecCCCCCHHHHHHHHHH
Confidence            9876432  12233333333322               24688999999999999888754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.38  E-value=1.5e-12  Score=105.05  Aligned_cols=105  Identities=16%  Similarity=0.077  Sum_probs=62.3

Q ss_pred             EEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCCCC
Q 022736          123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVDL  198 (293)
Q Consensus       123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~D~  198 (293)
                      +-++||+|......+...+.        ...+.+++|+|......... ...   +...+.+    -..|.++|.||+|+
T Consensus        51 ~~i~Dt~G~~~~~~l~~~~~--------~~~~~~i~v~~~~~~~s~~~-~~~---~~~~i~~~~~~~~~piivv~nK~Dl  118 (162)
T cd04138          51 LDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINSRKSFED-IHT---YREQIKRVKDSDDVPMVLVGNKCDL  118 (162)
T ss_pred             EEEEECCCCcchHHHHHHHH--------hcCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCCCEEEEEECccc
Confidence            55899999766554443222        34677888888875432211 100   1112222    24578999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+..   .....+....+..+               ..++.+|+++|.|++++..++.+
T Consensus       119 ~~~~---~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138         119 AART---VSSRQGQDLAKSYG---------------IPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ccce---ecHHHHHHHHHHhC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence            7643   12333333333221               13678999999999999887753

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.38  E-value=1.1e-12  Score=106.66  Aligned_cols=108  Identities=15%  Similarity=0.069  Sum_probs=64.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HH-------HhccCEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ-------IAFADVVI  192 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q-------i~~a~iiv  192 (293)
                      ..+.|+||||..........+        ....+++|+|+|.++........    .+...+ ..       ...+.++|
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~~ilv~D~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~~piilv  116 (168)
T cd04119          49 VRVNFFDLSGHPEYLEVRNEF--------YKDTQGVLLVYDVTDRQSFEALD----SWLKEMKQEGGPHGNMENIVVVVC  116 (168)
T ss_pred             EEEEEEECCccHHHHHHHHHH--------hccCCEEEEEEECCCHHHHHhHH----HHHHHHHHhccccccCCCceEEEE
Confidence            457799999975443333221        14578899999998654321110    011111 11       13568999


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .||+|+.+...  ..........+..+               ..++.+|+++|.|++++..++..
T Consensus       117 ~nK~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  164 (168)
T cd04119         117 ANKIDLTKHRA--VSEDEGRLWAESKG---------------FKYFETSACTGEGVNEMFQTLFS  164 (168)
T ss_pred             EEchhcccccc--cCHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence            99999974322  12333333333221               23578999999999999888753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01866 Rab2 Rab2 subfamily

Probab=99.38  E-value=3.5e-12  Score=104.41  Aligned_cols=106  Identities=16%  Similarity=0.046  Sum_probs=65.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN  194 (293)
                      ..+.|+||||......+..        .....+|.+++|+|+.+......       ...++.++      ..+.++|.|
T Consensus        53 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~il~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~pvivv~n  117 (168)
T cd01866          53 IKLQIWDTAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNH-------LTSWLEDARQHSNSNMTIMLIGN  117 (168)
T ss_pred             EEEEEEECCCcHHHHHHHH--------HHhccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCCcEEEEEE
Confidence            3578999999543222221        12246788999999986443222       12233222      346799999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+|+.+...  ...++.+...+..+               ..++.+|+.+++|++++..++.+.
T Consensus       118 K~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~i~~~~~~~~~~  164 (168)
T cd01866         118 KCDLESRRE--VSYEEGEAFAKEHG---------------LIFMETSAKTASNVEEAFINTAKE  164 (168)
T ss_pred             CcccccccC--CCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHHH
Confidence            999975432  23344444443321               236789999999999988777543

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.37  E-value=3e-12  Score=103.80  Aligned_cols=108  Identities=18%  Similarity=0.111  Sum_probs=64.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||||..........        .....+++++|+|+.+........    .+...+.+.   ..+.+++.||+|
T Consensus        50 ~~~~i~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iivv~nK~D  117 (163)
T cd01860          50 VKFEIWDTAGQERYRSLAPM--------YYRGAAAAIVVYDITSEESFEKAK----SWVKELQRNASPNIIIALVGNKAD  117 (163)
T ss_pred             EEEEEEeCCchHHHHHHHHH--------HhccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECcc
Confidence            45779999995432222211        123578899999998654322110    012222222   245688999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+...  .....+.+..+..+               ..++.+|+++|.|+.++.+++.+
T Consensus       118 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860         118 LESKRQ--VSTEEAQEYADENG---------------LLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             ccccCc--CCHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHH
Confidence            875332  23444444444432               23688999999999999888754

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04112 Rab26 Rab26 subfamily

Probab=99.37  E-value=3.8e-12  Score=106.54  Aligned_cols=109  Identities=12%  Similarity=0.092  Sum_probs=64.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||..........        ....+|++|+|+|..+....... ..   +...+.+.   ..|.++|.||+|
T Consensus        50 ~~~~i~Dt~G~~~~~~~~~~--------~~~~ad~~i~v~D~~~~~s~~~~-~~---~~~~i~~~~~~~~piiiv~NK~D  117 (191)
T cd04112          50 VKLQIWDTAGQERFRSVTHA--------YYRDAHALLLLYDITNKASFDNI-RA---WLTEIKEYAQEDVVIMLLGNKAD  117 (191)
T ss_pred             EEEEEEeCCCcHHHHHhhHH--------HccCCCEEEEEEECCCHHHHHHH-HH---HHHHHHHhCCCCCcEEEEEEccc
Confidence            45779999995433222211        12457889999999875432111 00   11122222   357889999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +......  .........+..+               ..++.+|+++|.|++++..++.+.
T Consensus       118 l~~~~~~--~~~~~~~l~~~~~---------------~~~~e~Sa~~~~~v~~l~~~l~~~  161 (191)
T cd04112         118 MSGERVV--KREDGERLAKEYG---------------VPFMETSAKTGLNVELAFTAVAKE  161 (191)
T ss_pred             chhcccc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9754321  2233333333221               246788999999999999888653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.37  E-value=5.2e-12  Score=110.03  Aligned_cols=136  Identities=17%  Similarity=0.077  Sum_probs=76.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH------------Hhcc
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------------IAFA  188 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------------i~~a  188 (293)
                      +.+-|+||+|......+...        .....|++|+|+|..+....... ..   +...+.+            ...+
T Consensus        48 ~~l~I~Dt~G~~~~~~~~~~--------~~~~ad~iIlVfdv~~~~Sf~~i-~~---~~~~I~~~k~~~~~~~~~~~~~p  115 (247)
T cd04143          48 YQLDILDTSGNHPFPAMRRL--------SILTGDVFILVFSLDNRESFEEV-CR---LREQILETKSCLKNKTKENVKIP  115 (247)
T ss_pred             EEEEEEECCCChhhhHHHHH--------HhccCCEEEEEEeCCCHHHHHHH-HH---HHHHHHHhhcccccccccCCCCc
Confidence            45679999997543322211        12457889999998765432111 00   1111111            1457


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCC
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHD  268 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~  268 (293)
                      .++|.||+|+....+  ...+++.+.+...+              ...++.+||+++.|++++..++......|.....+
T Consensus       116 iIivgNK~Dl~~~~~--v~~~ei~~~~~~~~--------------~~~~~evSAktg~gI~elf~~L~~~~~~p~e~~~~  179 (247)
T cd04143         116 MVICGNKADRDFPRE--VQRDEVEQLVGGDE--------------NCAYFEVSAKKNSNLDEMFRALFSLAKLPNEMSPS  179 (247)
T ss_pred             EEEEEECccchhccc--cCHHHHHHHHHhcC--------------CCEEEEEeCCCCCCHHHHHHHHHHHhccccccCcc
Confidence            899999999975332  23455555554211              12468899999999999999887655444322211


Q ss_pred             CCEEEEEEecCCCCCHH
Q 022736          269 NNVRTLSICEPLAVNLD  285 (293)
Q Consensus       269 ~~~~~~~~~~~~p~~~~  285 (293)
                       .-+.+.+.+..++|+-
T Consensus       180 -~~~~~~~~~~~~~~~~  195 (247)
T cd04143         180 -LHRKISVQYGDALHKK  195 (247)
T ss_pred             -ccceeeeeeccccccc
Confidence             1234444444444443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01862 Rab7 Rab7 subfamily

Probab=99.37  E-value=7.7e-12  Score=102.21  Aligned_cols=109  Identities=18%  Similarity=0.089  Sum_probs=64.3

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEeC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILNK  195 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlNK  195 (293)
                      .+.++|+||......+...        ....++.+|+++|+....... .....  ......+.      ..|.++|+||
T Consensus        50 ~~~~~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~p~ilv~nK  118 (172)
T cd01862          50 TLQIWDTAGQERFQSLGVA--------FYRGADCCVLVYDVTNPKSFE-SLDSW--RDEFLIQASPSDPENFPFVVLGNK  118 (172)
T ss_pred             EEEEEeCCChHHHHhHHHH--------HhcCCCEEEEEEECCCHHHHH-HHHHH--HHHHHHhcCccCCCCceEEEEEEC
Confidence            4569999996433222221        124578899999997654321 11000  01112211      4577999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.++..  ...+.+....+...              ...++.+|+.+|.|++++..++.+
T Consensus       119 ~Dl~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~i~~  164 (172)
T cd01862         119 IDLEEKRQ--VSTKKAQQWCQSNG--------------NIPYFETSAKEAINVEQAFETIAR  164 (172)
T ss_pred             cccccccc--cCHHHHHHHHHHcC--------------CceEEEEECCCCCCHHHHHHHHHH
Confidence            99985322  12344444444322              135788999999999999888764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01868 Rab11_like Rab11-like

Probab=99.37  E-value=3.5e-12  Score=103.75  Aligned_cols=108  Identities=14%  Similarity=0.070  Sum_probs=63.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||||...........        ....+.+++|+|..+....... .   .+...+.+.   ..|.++|.||+|
T Consensus        52 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~pi~vv~nK~D  119 (165)
T cd01868          52 IKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDITKKQTFENV-E---RWLKELRDHADSNIVIMLVGNKSD  119 (165)
T ss_pred             EEEEEEeCCChHHHHHHHHHH--------HCCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCCeEEEEEECcc
Confidence            356799999975433333221        1356789999999864432211 0   011112221   256789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ..++..+..+..  .             ..++.+|+++|.|++++..++..
T Consensus       120 l~~~~~~--~~~~~~~~~~~~--~-------------~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868         120 LRHLRAV--PTEEAKAFAEKN--G-------------LSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             ccccccC--CHHHHHHHHHHc--C-------------CEEEEEECCCCCCHHHHHHHHHH
Confidence            8764321  233334333321  1             23678999999999999888753

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.37  E-value=1.5e-12  Score=107.57  Aligned_cols=110  Identities=17%  Similarity=0.141  Sum_probs=64.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      +.+.++||||..+.......+        ...++.+++++|........... ..  +....++   ...|.++++||+|
T Consensus        49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~p~ilv~NK~D  117 (180)
T cd04137          49 YHLEIVDTAGQDEYSILPQKY--------SIGIHGYILVYSVTSRKSFEVVK-VI--YDKILDMLGKESVPIVLVGNKSD  117 (180)
T ss_pred             EEEEEEECCChHhhHHHHHHH--------HhhCCEEEEEEECCCHHHHHHHH-HH--HHHHHHhcCCCCCCEEEEEEchh
Confidence            456899999976543332221        23567789999988654321110 00  1112222   2347899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +....+.  .........+..+               ..++++|++++.|++++..|+.+.
T Consensus       118 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~~  161 (180)
T cd04137         118 LHTQRQV--STEEGKELAESWG---------------AAFLESSARENENVEEAFELLIEE  161 (180)
T ss_pred             hhhcCcc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence            8754321  2222333332221               246789999999999998887643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.37  E-value=3.2e-12  Score=103.51  Aligned_cols=105  Identities=16%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      .++.|+||||......+...+        ....+.+++|+|.........       ...+..++     ..|.++|.||
T Consensus        51 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~v~v~d~~~~~s~~~-------l~~~~~~~~~~~~~~p~iiv~nK  115 (162)
T cd04106          51 VRLMLWDTAGQEEFDAITKAY--------YRGAQACILVFSTTDRESFEA-------IESWKEKVEAECGDIPMVLVQTK  115 (162)
T ss_pred             EEEEEeeCCchHHHHHhHHHH--------hcCCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCCEEEEEEC
Confidence            467899999965443333222        246788899999876543221       11222222     4578999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.+..+.  ..++.....+.++               -+++.+|++++.|++++..++..
T Consensus       116 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         116 IDLLDQAVI--TNEEAEALAKRLQ---------------LPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             hhcccccCC--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence            999765432  2233333333322               13678999999999999888753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.37  E-value=2.5e-12  Score=104.46  Aligned_cols=112  Identities=15%  Similarity=0.081  Sum_probs=64.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~  196 (293)
                      ...+.++||||..........+        ...+|++++|+|+...........   .+.....+   -..|.+++.||+
T Consensus        43 ~~~~~l~D~~G~~~~~~~~~~~--------~~~ad~~i~v~D~~~~~s~~~~~~---~~~~~~~~~~~~~~piilv~NK~  111 (159)
T cd04150          43 NISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRERIGEARE---ELQRMLNEDELRDAVLLVFANKQ  111 (159)
T ss_pred             CEEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHHHHHHHHH---HHHHHHhcHHhcCCCEEEEEECC
Confidence            3457899999986544333222        256789999999986432111100   01111111   125789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+.+..    ...++...+. ++. +     ...   ...++++||++|+|++++..||.
T Consensus       112 Dl~~~~----~~~~i~~~~~-~~~-~-----~~~---~~~~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         112 DLPNAM----SAAEVTDKLG-LHS-L-----RNR---NWYIQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             CCCCCC----CHHHHHHHhC-ccc-c-----CCC---CEEEEEeeCCCCCCHHHHHHHHh
Confidence            986532    1233333331 110 0     000   12467899999999999999885

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.36  E-value=3.9e-12  Score=103.07  Aligned_cols=107  Identities=17%  Similarity=0.073  Sum_probs=64.9

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDL  198 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D~  198 (293)
                      ++.++|+||..........+        ...+|.+++|+|+.+........    .+...+.+   -..|.+++.||+|+
T Consensus        50 ~~~l~D~~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~~~----~~l~~~~~~~~~~~pivvv~nK~D~  117 (164)
T smart00175       50 KLQIWDTAGQERFRSITSSY--------YRGAVGALLVYDITNRESFENLK----NWLKELREYADPNVVIMLVGNKSDL  117 (164)
T ss_pred             EEEEEECCChHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEEchhc
Confidence            46799999964332222211        24578999999998755432210    01111111   13688999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+..+  ...+...+..+..+               .+++.+|+.++.|++++..++.+
T Consensus       118 ~~~~~--~~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175      118 EDQRQ--VSREEAEAFAEEHG---------------LPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             ccccC--CCHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence            76432  13344444443321               13678999999999999888754

Rab GTPases are implicated in vesicle trafficking.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.36  E-value=4.8e-12  Score=107.10  Aligned_cols=114  Identities=16%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch-HH-HHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LF-QIDKYRHLSSYPEAIHQIAF-ADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~-~~-~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D  197 (293)
                      ..+.||||||..+   +.     ..++.....+|.+++|+|+... .. ....      ....+...+. +.++++||+|
T Consensus        83 ~~i~~iDtPG~~~---~~-----~~~~~~~~~~D~~llVvd~~~~~~~~~t~~------~l~~~~~~~~~~iiivvNK~D  148 (203)
T cd01888          83 RHVSFVDCPGHEI---LM-----ATMLSGAAVMDGALLLIAANEPCPQPQTSE------HLAALEIMGLKHIIIVQNKID  148 (203)
T ss_pred             cEEEEEECCChHH---HH-----HHHHHhhhcCCEEEEEEECCCCCCCcchHH------HHHHHHHcCCCcEEEEEEchh
Confidence            5689999999532   22     2334455678999999999852 11 1110      1122222333 4688999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhcc
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY  260 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~  260 (293)
                      +.+..+    .....+.+++......        .....++++||++|+|+++|.+++.+...
T Consensus       149 l~~~~~----~~~~~~~i~~~~~~~~--------~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         149 LVKEEQ----ALENYEQIKKFVKGTI--------AENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             ccCHHH----HHHHHHHHHHHHhccc--------cCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            986431    2222233332211100        01235789999999999999999976543

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.36  E-value=3e-12  Score=123.67  Aligned_cols=189  Identities=17%  Similarity=0.165  Sum_probs=94.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC-ccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~-~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .|.|+++++|.+|+|||||+|+|...    +  +...++|. +..+....+....            ..++|..    ..
T Consensus         2 ~r~piV~IiG~~d~GKTSLln~l~~~----~--v~~~e~ggiTq~iG~~~v~~~~------------~~~~~~~----~~   59 (590)
T TIGR00491         2 LRSPIVSVLGHVDHGKTTLLDKIRGS----A--VAKREAGGITQHIGATEIPMDV------------IEGICGD----LL   59 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcc----c--cccccCCceecccCeeEeeecc------------ccccccc----cc
Confidence            47899999999999999999999943    2  22333332 0000000000000            0000000    00


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                      .   ..-.......+.|+||||......+..        ......|.+++|+|+..........     ....+.....+
T Consensus        60 ~---~~~v~~~~~~l~~iDTpG~e~f~~l~~--------~~~~~aD~~IlVvD~~~g~~~qt~e-----~i~~l~~~~vp  123 (590)
T TIGR00491        60 K---KFKIRLKIPGLLFIDTPGHEAFTNLRK--------RGGALADLAILIVDINEGFKPQTQE-----ALNILRMYKTP  123 (590)
T ss_pred             c---ccccccccCcEEEEECCCcHhHHHHHH--------HHHhhCCEEEEEEECCcCCCHhHHH-----HHHHHHHcCCC
Confidence            0   000001123588999999654333221        1224688999999998643221110     12233445678


Q ss_pred             CEEEEeCCCCCCCCCCcc----------hHHHH--------HHHHHhhcCC---CEEEEeecCCCCchhhcccccCCcch
Q 022736          189 DVVILNKVDLVSPERSGD----------SLDEL--------EKEIHEINSL---AHVIRSVRCQVDLSEVLNCRAYDATH  247 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~----------~~~~~--------~~~l~~lnp~---a~i~~~~~~~~~~~~i~~~sa~~~~~  247 (293)
                      .++++||+|+.+......          ....+        ...+.++...   ...+.........-.++++||++|+|
T Consensus       124 iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeG  203 (590)
T TIGR00491       124 FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEG  203 (590)
T ss_pred             EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCC
Confidence            999999999974210000          00011        1111122111   10000000111224678999999999


Q ss_pred             hhhhhhhhh
Q 022736          248 VTRLEGLLE  256 (293)
Q Consensus       248 ~~~l~~~l~  256 (293)
                      +++|..++.
T Consensus       204 ideLl~~l~  212 (590)
T TIGR00491       204 IPELLTMLA  212 (590)
T ss_pred             hhHHHHHHH
Confidence            999998774

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04136 Rap_like Rap-like subfamily

Probab=99.36  E-value=2.2e-12  Score=104.58  Aligned_cols=108  Identities=16%  Similarity=0.085  Sum_probs=63.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~  196 (293)
                      ..+.|+||||......+...+.        ...+++++|+|.......... .   .+...+.+.    ..|.++|.||+
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~piilv~nK~  116 (163)
T cd04136          49 CMLEILDTAGTEQFTAMRDLYI--------KNGQGFVLVYSITSQSSFNDL-Q---DLREQILRVKDTENVPMVLVGNKC  116 (163)
T ss_pred             EEEEEEECCCccccchHHHHHh--------hcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCCEEEEEECc
Confidence            3456899999766544443221        357889999998764432111 0   011122211    35778999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+....  .........+..+               .+++.+||++|.|+.++..++.+
T Consensus       117 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136         117 DLEDERVV--SREEGQALARQWG---------------CPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ccccccee--cHHHHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence            98754321  1222222222111               24688999999999999888753

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.36  E-value=1.1e-11  Score=100.62  Aligned_cols=108  Identities=13%  Similarity=0.087  Sum_probs=64.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      .++.++||||..........        ...+.|++++|+|.++.......    ..+...+.+.  ..+.++|.||+|+
T Consensus        52 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~----~~~~~~~~~~~~~~p~ilv~nK~Dl  119 (164)
T cd04101          52 VELFIFDSAGQELYSDMVSN--------YWESPSVFILVYDVSNKASFENC----SRWVNKVRTASKHMPGVLVGNKMDL  119 (164)
T ss_pred             EEEEEEECCCHHHHHHHHHH--------HhCCCCEEEEEEECcCHHHHHHH----HHHHHHHHHhCCCCCEEEEEECccc
Confidence            56889999996443333322        22567899999999875432211    0012222222  3678999999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+..+.  ............+               ..++.+|++++.|++++..++.+
T Consensus       120 ~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  161 (164)
T cd04101         120 ADKAEV--TDAQAQAFAQANQ---------------LKFFKTSALRGVGYEEPFESLAR  161 (164)
T ss_pred             ccccCC--CHHHHHHHHHHcC---------------CeEEEEeCCCCCChHHHHHHHHH
Confidence            765432  1111111111111               23678999999999999887753

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.36  E-value=5.6e-12  Score=110.64  Aligned_cols=166  Identities=20%  Similarity=0.241  Sum_probs=94.2

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ....|.++|.|+||+|||||++.+.+.    ++-|-..-|.+ -++.--.+.                            
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~A----kpEvA~YPFTT-K~i~vGhfe----------------------------  211 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTTA----KPEVAPYPFTT-KGIHVGHFE----------------------------  211 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhcC----CCccCCCCccc-cceeEeeee----------------------------
Confidence            446889999999999999999999954    33343333332 222110000                            


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHH-hhhcccCCchHHHHHHh
Q 022736          109 QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI-DKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~-~~~~~~~~~~~~~~qi~  186 (293)
                               .+...+-+|||||+.+ |..-.+.+-.++.++-..--+.|+|++|++....+. .....  .+.+......
T Consensus       212 ---------~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~--L~~eIk~~f~  280 (346)
T COG1084         212 ---------RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQIS--LLEEIKELFK  280 (346)
T ss_pred             ---------cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHH--HHHHHHHhcC
Confidence                     1334678999999665 544444443233222222335689999998543211 11000  1223333344


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+.++|+||+|..+.+    .++++...+....              ..+.+.+++..+.+.+.+...+.
T Consensus       281 ~p~v~V~nK~D~~~~e----~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~d~~~~~v~  332 (346)
T COG1084         281 APIVVVINKIDIADEE----KLEEIEASVLEEG--------------GEEPLKISATKGCGLDKLREEVR  332 (346)
T ss_pred             CCeEEEEecccccchh----HHHHHHHHHHhhc--------------cccccceeeeehhhHHHHHHHHH
Confidence            6799999999998654    3455554433221              12345567777777766655443

>cd04175 Rap1 Rap1 subgroup

Probab=99.36  E-value=2.4e-12  Score=104.66  Aligned_cols=109  Identities=13%  Similarity=0.046  Sum_probs=64.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.|+||||......+.....        ..+|++++|+|........... ..  .......   -..|.++|.||+|
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~~~-~~--~~~i~~~~~~~~~piilv~nK~D  117 (164)
T cd04175          49 CMLEILDTAGTEQFTAMRDLYM--------KNGQGFVLVYSITAQSTFNDLQ-DL--REQILRVKDTEDVPMILVGNKCD  117 (164)
T ss_pred             EEEEEEECCCcccchhHHHHHH--------hhCCEEEEEEECCCHHHHHHHH-HH--HHHHHHhcCCCCCCEEEEEECCc
Confidence            3456899999866555443322        4567889999986543321110 00  1111111   1357899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+....  .........+..+               .+++.+||++|.|++++..|+.+
T Consensus       118 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175         118 LEDERVV--GKEQGQNLARQWG---------------CAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             chhccEE--cHHHHHHHHHHhC---------------CEEEEeeCCCCCCHHHHHHHHHH
Confidence            9764321  2222222223222               24678999999999999888754

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04113 Rab4 Rab4 subfamily

Probab=99.36  E-value=4.1e-12  Score=102.92  Aligned_cols=107  Identities=13%  Similarity=0.037  Sum_probs=65.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||||..........        ....++.+++|+|..+........    .+...+.+.   ..+.+++.||+|
T Consensus        49 ~~l~l~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iivv~nK~D  116 (161)
T cd04113          49 VKLQIWDTAGQERFRSVTRS--------YYRGAAGALLVYDITNRTSFEALP----TWLSDARALASPNIVVILVGNKSD  116 (161)
T ss_pred             EEEEEEECcchHHHHHhHHH--------HhcCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEEchh
Confidence            35679999996433222221        124678999999998755432210    012222222   346889999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +....+  ..........+..+               ..++.+|++++.|++++..++.
T Consensus       117 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113         117 LADQRE--VTFLEASRFAQENG---------------LLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             cchhcc--CCHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHH
Confidence            876432  13344444444322               2467899999999999988775

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.35  E-value=6.5e-12  Score=102.37  Aligned_cols=108  Identities=18%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+-++||||..........+        ....+++++|+|+++....... .   .+...+.+.   ..+.++|.||+|
T Consensus        51 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~~~l-~---~~~~~~~~~~~~~~~~iiv~nK~D  118 (166)
T cd01869          51 IKLQIWDTAGQERFRTITSSY--------YRGAHGIIIVYDVTDQESFNNV-K---QWLQEIDRYASENVNKLLVGNKCD  118 (166)
T ss_pred             EEEEEEECCCcHhHHHHHHHH--------hCcCCEEEEEEECcCHHHHHhH-H---HHHHHHHHhCCCCCcEEEEEEChh
Confidence            346799999965433333222        1467899999999875432211 0   011122221   257799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +......  ...+.....+..+               .+++.+|+++|+|++++..++.+
T Consensus       119 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869         119 LTDKRVV--DYSEAQEFADELG---------------IPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             cccccCC--CHHHHHHHHHHcC---------------CeEEEEECCCCcCHHHHHHHHHH
Confidence            8764422  2233333333211               24688999999999999887754

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN03118 Rab family protein; Provisional

Probab=99.35  E-value=6.1e-12  Score=107.04  Aligned_cols=109  Identities=20%  Similarity=0.134  Sum_probs=65.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~  196 (293)
                      ..+.|+||||......+...+        ...++.+++|+|..+......... .  +...+..    ...+.++|.||+
T Consensus        62 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~~vlv~D~~~~~sf~~~~~-~--~~~~~~~~~~~~~~~~ilv~NK~  130 (211)
T PLN03118         62 LKLTIWDTAGQERFRTLTSSY--------YRNAQGIILVYDVTRRETFTNLSD-V--WGKEVELYSTNQDCVKMLVGNKV  130 (211)
T ss_pred             EEEEEEECCCchhhHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHHH-H--HHHHHHHhcCCCCCCEEEEEECc
Confidence            457899999976654443322        145788999999987543322100 0  1111111    123578999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+......  .........+..+               ..++.+|++++.|++++..++..
T Consensus       131 Dl~~~~~i--~~~~~~~~~~~~~---------------~~~~e~SAk~~~~v~~l~~~l~~  174 (211)
T PLN03118        131 DRESERDV--SREEGMALAKEHG---------------CLFLECSAKTRENVEQCFEELAL  174 (211)
T ss_pred             cccccCcc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            98764321  2233333333221               13678999999999999888764

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.35  E-value=3.8e-12  Score=105.12  Aligned_cols=114  Identities=14%  Similarity=0.091  Sum_probs=66.7

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--H-hccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i-~~a~iivlNK~  196 (293)
                      ...+.++||||..........+        ...++++|+|+|++..........   .+...+.+  . ..+.++|.||+
T Consensus        56 ~~~l~l~D~~G~~~~~~~~~~~--------~~~ad~ii~v~D~t~~~s~~~~~~---~l~~~~~~~~~~~~piilv~NK~  124 (175)
T smart00177       56 NISFTVWDVGGQDKIRPLWRHY--------YTNTQGLIFVVDSNDRDRIDEARE---ELHRMLNEDELRDAVILVFANKQ  124 (175)
T ss_pred             CEEEEEEECCCChhhHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHHH---HHHHHhhCHhhcCCcEEEEEeCc
Confidence            3567899999986654444332        246788999999986432211100   01111111  1 24789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+.+..    ...++...+....        ...  ....++++||++|+|+.++.+||.+.
T Consensus       125 Dl~~~~----~~~~i~~~~~~~~--------~~~--~~~~~~~~Sa~~g~gv~e~~~~l~~~  172 (175)
T smart00177      125 DLPDAM----KAAEITEKLGLHS--------IRD--RNWYIQPTCATSGDGLYEGLTWLSNN  172 (175)
T ss_pred             CcccCC----CHHHHHHHhCccc--------cCC--CcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence            986542    1233333332110        000  11235689999999999999998654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.35  E-value=5.9e-12  Score=104.05  Aligned_cols=159  Identities=22%  Similarity=0.224  Sum_probs=94.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+---+++.|+.||||||++++|..    .+..-+.+..|-  ++  ..+.                             
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~----~~~~~~~pT~g~--~~--~~i~-----------------------------   54 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKN----GEISETIPTIGF--NI--EEIK-----------------------------   54 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHS----SSEEEEEEESSE--EE--EEEE-----------------------------
T ss_pred             CcEEEEEEECCCccchHHHHHHhhh----ccccccCccccc--cc--ceee-----------------------------
Confidence            4445568899999999999999984    222223333331  11  1110                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHh
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIA  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~  186 (293)
                              ..+..+.+.|.+|-....++...+.        ..++++|+|||+............   +...+.   ...
T Consensus        55 --------~~~~~~~~~d~gG~~~~~~~w~~y~--------~~~~~iIfVvDssd~~~l~e~~~~---L~~ll~~~~~~~  115 (175)
T PF00025_consen   55 --------YKGYSLTIWDLGGQESFRPLWKSYF--------QNADGIIFVVDSSDPERLQEAKEE---LKELLNDPELKD  115 (175)
T ss_dssp             --------ETTEEEEEEEESSSGGGGGGGGGGH--------TTESEEEEEEETTGGGGHHHHHHH---HHHHHTSGGGTT
T ss_pred             --------eCcEEEEEEeccccccccccceeec--------cccceeEEEEecccceeecccccc---hhhhcchhhccc
Confidence                    1345678999999654444443322        367899999999864321111100   111221   124


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .|.+|++||.|+.+..    ....+...+.-.. ..       .. ..-.++.+|+.+|+|+.+..+||.+
T Consensus       116 ~piLIl~NK~D~~~~~----~~~~i~~~l~l~~-l~-------~~-~~~~v~~~sa~~g~Gv~e~l~WL~~  173 (175)
T PF00025_consen  116 IPILILANKQDLPDAM----SEEEIKEYLGLEK-LK-------NK-RPWSVFSCSAKTGEGVDEGLEWLIE  173 (175)
T ss_dssp             SEEEEEEESTTSTTSS----THHHHHHHTTGGG-TT-------SS-SCEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             ceEEEEeccccccCcc----hhhHHHhhhhhhh-cc-------cC-CceEEEeeeccCCcCHHHHHHHHHh
Confidence            6789999999987754    3355555443111 00       00 1235788999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.35  E-value=1.7e-11  Score=103.46  Aligned_cols=109  Identities=12%  Similarity=0.095  Sum_probs=66.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-H------HhccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-Q------IAFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-q------i~~a~iivl  193 (293)
                      ..+.|+||||......+...+        ...++++|+|+|.+.........    .+...+. .      -..|.++|.
T Consensus        50 ~~l~l~Dt~G~~~~~~~~~~~--------~~~a~~~ilv~D~t~~~s~~~~~----~~~~~i~~~~~~~~~~~~piilv~  117 (201)
T cd04107          50 VRLQLWDIAGQERFGGMTRVY--------YRGAVGAIIVFDVTRPSTFEAVL----KWKADLDSKVTLPNGEPIPCLLLA  117 (201)
T ss_pred             EEEEEEECCCchhhhhhHHHH--------hCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhcccCCCCCcEEEEE
Confidence            457899999975443333222        24678899999987654322110    0111111 1      234779999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ||+|+.+...  ...+++.+..+..+              ...++.+|+++|.|++++..|+..
T Consensus       118 NK~Dl~~~~~--~~~~~~~~~~~~~~--------------~~~~~e~Sak~~~~v~e~f~~l~~  165 (201)
T cd04107         118 NKCDLKKRLA--KDGEQMDQFCKENG--------------FIGWFETSAKEGINIEEAMRFLVK  165 (201)
T ss_pred             ECCCcccccc--cCHHHHHHHHHHcC--------------CceEEEEeCCCCCCHHHHHHHHHH
Confidence            9999974222  23455555554332              134678999999999998888754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.34  E-value=7.2e-12  Score=106.95  Aligned_cols=109  Identities=14%  Similarity=0.053  Sum_probs=65.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh------ccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA------FADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~------~a~iivlN  194 (293)
                      ..+.|+||+|...+..+...+        ...+|++|+|+|.++....... .   .+...+.+..      .+.++|.|
T Consensus        50 ~~~~i~Dt~G~~~~~~l~~~~--------~~~ad~iilV~D~t~~~s~~~~-~---~w~~~l~~~~~~~~~~~piilVgN  117 (215)
T cd04109          50 VTLQVWDIGGQSIGGKMLDKY--------IYGAHAVFLVYDVTNSQSFENL-E---DWYSMVRKVLKSSETQPLVVLVGN  117 (215)
T ss_pred             EEEEEEECCCcHHHHHHHHHH--------hhcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhccccCCCceEEEEEE
Confidence            457899999975554444333        2468899999999875432211 0   0122222221      24678999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+|+.+....  ..++.....+..+               ...+.+||++|+|++++.+++...
T Consensus       118 K~DL~~~~~v--~~~~~~~~~~~~~---------------~~~~~iSAktg~gv~~lf~~l~~~  164 (215)
T cd04109         118 KTDLEHNRTV--KDDKHARFAQANG---------------MESCLVSAKTGDRVNLLFQQLAAE  164 (215)
T ss_pred             Cccccccccc--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999754321  2233333333221               124678999999999998888653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04114 Rab30 Rab30 subfamily

Probab=99.33  E-value=7.1e-12  Score=102.30  Aligned_cols=158  Identities=20%  Similarity=0.184  Sum_probs=87.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ...-++++|.+|+|||||+++++...       +....+.+.+.+....           .+...               
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~-------~~~~~~~t~~~~~~~~-----------~~~~~---------------   52 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGL-------FPPGQGATIGVDFMIK-----------TVEIK---------------   52 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCceeeEEEEE-----------EEEEC---------------
Confidence            45779999999999999999998531       0111111111110000           00000               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~  187 (293)
                             .....+.++|+||..........        .....+.+++|+|.......... .   .+...+.+.   ..
T Consensus        53 -------~~~~~~~~~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~l~~~~~~~~  113 (169)
T cd04114          53 -------GEKIKLQIWDTAGQERFRSITQS--------YYRSANALILTYDITCEESFRCL-P---EWLREIEQYANNKV  113 (169)
T ss_pred             -------CEEEEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCC
Confidence                   11234678999996443322221        12457889999999765332110 0   011112222   34


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.++|.||+|+.+..+.   ...+.+.+....+              ..++.+|+++|.|+.++..++..
T Consensus       114 ~~i~v~NK~D~~~~~~i---~~~~~~~~~~~~~--------------~~~~~~Sa~~~~gv~~l~~~i~~  166 (169)
T cd04114         114 ITILVGNKIDLAERREV---SQQRAEEFSDAQD--------------MYYLETSAKESDNVEKLFLDLAC  166 (169)
T ss_pred             eEEEEEECccccccccc---CHHHHHHHHHHcC--------------CeEEEeeCCCCCCHHHHHHHHHH
Confidence            56999999998754432   2233333333322              23578999999999999887753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04123 Rab21 Rab21 subfamily

Probab=99.33  E-value=3.3e-12  Score=103.10  Aligned_cols=107  Identities=19%  Similarity=0.172  Sum_probs=64.7

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL  198 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D~  198 (293)
                      .+.++||||..........+        ...++.+++|+|..+........    .+...+.+.   ..+.++++||+|+
T Consensus        50 ~~~~~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~piiiv~nK~D~  117 (162)
T cd04123          50 DLAIWDTAGQERYHALGPIY--------YRDADGAILVYDITDADSFQKVK----KWIKELKQMRGNNISLVIVGNKIDL  117 (162)
T ss_pred             EEEEEECCchHHHHHhhHHH--------hccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECccc
Confidence            47899999965443333221        13578899999987654321110    011122222   3578999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ......  ..+.+.+..+..+               ..++.+|++++.|++++..|+..
T Consensus       118 ~~~~~~--~~~~~~~~~~~~~---------------~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123         118 ERQRVV--SKSEAEEYAKSVG---------------AKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             ccccCC--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            754321  2334444444322               23578999999999999988754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.33  E-value=4.5e-12  Score=105.33  Aligned_cols=113  Identities=13%  Similarity=0.074  Sum_probs=66.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~  196 (293)
                      +..+.++|+||......+...+        ...+|++|+|+|+++.........   .+...+.+   -..+.+++.||+
T Consensus        60 ~~~~~i~D~~Gq~~~~~~~~~~--------~~~a~~iI~V~D~s~~~s~~~~~~---~l~~~l~~~~~~~~piilv~NK~  128 (181)
T PLN00223         60 NISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ  128 (181)
T ss_pred             CEEEEEEECCCCHHHHHHHHHH--------hccCCEEEEEEeCCcHHHHHHHHH---HHHHHhcCHhhCCCCEEEEEECC
Confidence            3457899999975443333222        145789999999986543221100   01111111   135789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+..    ..+++.+.+.-.+...          ....++++||++|+|+.++..|+.+
T Consensus       129 Dl~~~~----~~~~~~~~l~l~~~~~----------~~~~~~~~Sa~~g~gv~e~~~~l~~  175 (181)
T PLN00223        129 DLPNAM----NAAEITDKLGLHSLRQ----------RHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
T ss_pred             CCCCCC----CHHHHHHHhCccccCC----------CceEEEeccCCCCCCHHHHHHHHHH
Confidence            987643    2345555443111100          0013567899999999999999864

>cd04122 Rab14 Rab14 subfamily

Probab=99.33  E-value=2e-11  Score=99.55  Aligned_cols=107  Identities=15%  Similarity=0.070  Sum_probs=63.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      .++.++||||..........        ....++++++|+|..+....... .   .+.......   ..+.++|.||+|
T Consensus        51 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~iiiv~nK~D  118 (166)
T cd04122          51 IKLQIWDTAGQERFRAVTRS--------YYRGAAGALMVYDITRRSTYNHL-S---SWLTDARNLTNPNTVIFLIGNKAD  118 (166)
T ss_pred             EEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhCCCCCeEEEEEECcc
Confidence            45789999996543333322        12467899999999875432211 0   011111122   235789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.+..+.  ..++..+..+..+               ..++.+||++|+|++++..++.
T Consensus       119 l~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122         119 LEAQRDV--TYEEAKQFADENG---------------LLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             cccccCc--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHH
Confidence            9765432  2344444443321               2467899999999998876654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.33  E-value=2e-11  Score=102.66  Aligned_cols=165  Identities=17%  Similarity=0.151  Sum_probs=90.4

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC-CCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      |+++|.+|+|||||+|.|+    |.+.+..... .+.    +......                                
T Consensus         3 i~lvG~~g~GKSsl~N~il----g~~~~~~~~~~~~~----T~~~~~~--------------------------------   42 (196)
T cd01852           3 LVLVGKTGAGKSATGNTIL----GREVFESKLSASSV----TKTCQKE--------------------------------   42 (196)
T ss_pred             EEEECCCCCCHHHHHHHhh----CCCccccccCCCCc----cccccee--------------------------------
Confidence            7889999999999999999    4444322221 111    1110000                                


Q ss_pred             HHhhcCCCCEEEEecCCCCCcH----HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----
Q 022736          114 LVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----  185 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~----~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----  185 (293)
                       .....+.++.+|||||+.+..    .+... +..........++.+++|+|+..+... +..     ....+.++    
T Consensus        43 -~~~~~~~~i~viDTPG~~d~~~~~~~~~~~-i~~~~~~~~~g~~~illVi~~~~~t~~-d~~-----~l~~l~~~fg~~  114 (196)
T cd01852          43 -SAVWDGRRVNVIDTPGLFDTSVSPEQLSKE-IVRCLSLSAPGPHAFLLVVPLGRFTEE-EEQ-----AVETLQELFGEK  114 (196)
T ss_pred             -eEEECCeEEEEEECcCCCCccCChHHHHHH-HHHHHHhcCCCCEEEEEEEECCCcCHH-HHH-----HHHHHHHHhChH
Confidence             000134568999999988753    12221 112222234568899999999874322 211     22233222    


Q ss_pred             -hccCEEEEeCCCCCCCCCCcch----HHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 -AFADVVILNKVDLVSPERSGDS----LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 -~~a~iivlNK~D~~~~~~~~~~----~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                       -...++|+||.|.+..++....    -..++..++......-.         +..... ++..+..+.+|.+.+.+
T Consensus       115 ~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~---------f~~~~~-~~~~~~q~~~Ll~~i~~  181 (196)
T cd01852         115 VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA---------FNNKAK-GEEQEQQVKELLAKVES  181 (196)
T ss_pred             hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE---------EeCCCC-cchhHHHHHHHHHHHHH
Confidence             2466899999998865432111    13445555544322111         223334 56677778888877765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.33  E-value=2.9e-12  Score=104.95  Aligned_cols=115  Identities=13%  Similarity=0.084  Sum_probs=64.9

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~  196 (293)
                      +..+.++|+||......+...        ....++++++|+|++...........   +.....   ....|.++|.||+
T Consensus        42 ~~~~~i~D~~G~~~~~~~~~~--------~~~~a~~ii~V~D~s~~~s~~~~~~~---l~~l~~~~~~~~~piliv~NK~  110 (167)
T cd04161          42 KYEVCIFDLGGGANFRGIWVN--------YYAEAHGLVFVVDSSDDDRVQEVKEI---LRELLQHPRVSGKPILVLANKQ  110 (167)
T ss_pred             CEEEEEEECCCcHHHHHHHHH--------HHcCCCEEEEEEECCchhHHHHHHHH---HHHHHcCccccCCcEEEEEeCC
Confidence            356789999997554443322        12467899999999865322111000   011111   1245789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc------chhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA------THVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~------~~~~~l~~~l~  256 (293)
                      |+.+...    ...+.+.+. +.   .+..   ..-..-.++.+||++|      .|+.+...||.
T Consensus       111 Dl~~~~~----~~~i~~~~~-l~---~~~~---~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         111 DKKNALL----GADVIEYLS-LE---KLVN---ENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             CCcCCCC----HHHHHHhcC-cc---cccC---CCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence            9876431    233333321 10   1100   0001135678999998      78999889985

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.33  E-value=1.6e-12  Score=110.43  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=60.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D  197 (293)
                      .+..+.|+||||..+..   .     ........+|.+++|+|+..........     ..........+ .++|+||+|
T Consensus        75 ~~~~~~liDTpG~~~~~---~-----~~~~~~~~ad~~llVvD~~~~~~~~~~~-----~~~~~~~~~~~~iIvviNK~D  141 (208)
T cd04166          75 PKRKFIIADTPGHEQYT---R-----NMVTGASTADLAILLVDARKGVLEQTRR-----HSYILSLLGIRHVVVAVNKMD  141 (208)
T ss_pred             CCceEEEEECCcHHHHH---H-----HHHHhhhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCCcEEEEEEchh
Confidence            35578999999964321   1     1122346789999999998653222110     12223333434 456899999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      +.+..+  .....+...++.+....       + .+...++++||++|.|+.+.
T Consensus       142 ~~~~~~--~~~~~i~~~~~~~~~~~-------~-~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         142 LVDYSE--EVFEEIVADYLAFAAKL-------G-IEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             cccCCH--HHHHHHHHHHHHHHHHc-------C-CCCceEEEEeCCCCCCCccC
Confidence            975431  11223333333221110       0 11234789999999998643

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04110 Rab35 Rab35 subfamily

Probab=99.32  E-value=2.6e-11  Score=102.21  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=64.0

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNKV  196 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK~  196 (293)
                      .+.|+||||......+....        ....+++++|+|+.+......       ...++.++     ..+.++|.||+
T Consensus        56 ~l~l~D~~G~~~~~~~~~~~--------~~~a~~iilv~D~~~~~s~~~-------~~~~~~~i~~~~~~~piivVgNK~  120 (199)
T cd04110          56 KLQIWDTAGQERFRTITSTY--------YRGTHGVIVVYDVTNGESFVN-------VKRWLQEIEQNCDDVCKVLVGNKN  120 (199)
T ss_pred             EEEEEeCCCchhHHHHHHHH--------hCCCcEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCCEEEEEECc
Confidence            46799999965443333222        134678999999986543221       11222222     24679999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+....  .........+..+               ..++.+|+++|.|++++..++..
T Consensus       121 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~gi~~lf~~l~~  164 (199)
T cd04110         121 DDPERKVV--ETEDAYKFAGQMG---------------ISLFETSAKENINVEEMFNCITE  164 (199)
T ss_pred             cccccccc--CHHHHHHHHHHcC---------------CEEEEEECCCCcCHHHHHHHHHH
Confidence            98764321  2233333333322               24678999999999999888754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.32  E-value=1.4e-11  Score=100.76  Aligned_cols=104  Identities=13%  Similarity=0.026  Sum_probs=64.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      ..+.++||+|......+...+        ...+|++|+|+|.........       ...++.++     ..|.++|.||
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~piiiv~nK  113 (166)
T cd00877          49 IRFNVWDTAGQEKFGGLRDGY--------YIGGQCAIIMFDVTSRVTYKN-------VPNWHRDLVRVCGNIPIVLCGNK  113 (166)
T ss_pred             EEEEEEECCCChhhccccHHH--------hcCCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCcEEEEEEc
Confidence            457899999975543222221        145789999999986544321       12222222     4678999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +|+.+...    ..+..+..+ .+              ...++.+||++|+|++++..++...
T Consensus       114 ~Dl~~~~~----~~~~~~~~~-~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877         114 VDIKDRKV----KAKQITFHR-KK--------------NLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             hhcccccC----CHHHHHHHH-Hc--------------CCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99874321    111111111 11              1346889999999999999988643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04142 RRP22 RRP22 subfamily

Probab=99.32  E-value=1.3e-11  Score=104.15  Aligned_cols=116  Identities=18%  Similarity=0.079  Sum_probs=63.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH------HhccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------IAFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------i~~a~iivlN  194 (293)
                      .++.|+||||...........+..........+|++++|+|+.+....... .   .+...+.+      -..|.++|.|
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~-~---~~~~~i~~~~~~~~~~~piiivgN  124 (198)
T cd04142          49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYV-K---LLRQQILETRPAGNKEPPIVVVGN  124 (198)
T ss_pred             EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcccCCCCCCEEEEEE
Confidence            456799999975421111111111112234578999999999875432211 0   01111111      1257899999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+|+......  ....+....++.. .             -.++.+||++|.|++++...+.
T Consensus       125 K~Dl~~~~~~--~~~~~~~~~~~~~-~-------------~~~~e~Sak~g~~v~~lf~~i~  170 (198)
T cd04142         125 KRDQQRHRFA--PRHVLSVLVRKSW-K-------------CGYLECSAKYNWHILLLFKELL  170 (198)
T ss_pred             Cccccccccc--cHHHHHHHHHHhc-C-------------CcEEEecCCCCCCHHHHHHHHH
Confidence            9999654321  1222222222111 0             2468899999999998876554

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.32  E-value=1.5e-11  Score=100.42  Aligned_cols=108  Identities=18%  Similarity=0.107  Sum_probs=64.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||||..........        ....+|++++|+|+....... ...   .+...+.+.   ..+.++|.||+|
T Consensus        52 ~~l~l~D~~g~~~~~~~~~~--------~~~~ad~~i~v~d~~~~~s~~-~~~---~~~~~i~~~~~~~~p~iiv~nK~D  119 (167)
T cd01867          52 IKLQIWDTAGQERFRTITTA--------YYRGAMGIILVYDITDEKSFE-NIR---NWMRNIEEHASEDVERMLVGNKCD  119 (167)
T ss_pred             EEEEEEeCCchHHHHHHHHH--------HhCCCCEEEEEEECcCHHHHH-hHH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence            35689999996543333221        124678999999987654322 110   112222221   246799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ..++.....+..+               ..++.+|+.++.|++++..++.+
T Consensus       120 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~  162 (167)
T cd01867         120 MEEKRVV--SKEEGEALADEYG---------------IKFLETSAKANINVEEAFFTLAK  162 (167)
T ss_pred             cccccCC--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            9864321  2334444433221               13588999999999998887754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.32  E-value=9.1e-12  Score=120.48  Aligned_cols=162  Identities=17%  Similarity=0.175  Sum_probs=95.6

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCC-CccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG-EEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g-~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      ..|.|+++++|..|+|||||+++|...    +++  ..+.+ .+..+....+             ..             
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~----~v~--~~e~~GIT~~ig~~~v-------------~~-------------  131 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKT----KVA--QGEAGGITQHIGAYHV-------------EN-------------  131 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhC----Ccc--cccCCceeecceEEEE-------------EE-------------
Confidence            458899999999999999999999842    221  11221 1111100000             00             


Q ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                                .+...+.|+||||.........        .....+|.+++|+|+..........     ..........
T Consensus       132 ----------~~~~~i~~iDTPGhe~F~~~r~--------rga~~aDiaILVVda~dgv~~qT~e-----~i~~~~~~~v  188 (587)
T TIGR00487       132 ----------EDGKMITFLDTPGHEAFTSMRA--------RGAKVTDIVVLVVAADDGVMPQTIE-----AISHAKAANV  188 (587)
T ss_pred             ----------CCCcEEEEEECCCCcchhhHHH--------hhhccCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCC
Confidence                      0112578999999765433321        2335678899999987543221110     1222333456


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |.++++||+|+.+..     .+++...++...-...    .++  ....++++||++|+|++++.+++.
T Consensus       189 PiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~----~~~--~~~~~v~iSAktGeGI~eLl~~I~  246 (587)
T TIGR00487       189 PIIVAINKIDKPEAN-----PDRVKQELSEYGLVPE----DWG--GDTIFVPVSALTGDGIDELLDMIL  246 (587)
T ss_pred             CEEEEEECcccccCC-----HHHHHHHHHHhhhhHH----hcC--CCceEEEEECCCCCChHHHHHhhh
Confidence            899999999986532     3455555544321100    000  112578999999999999988874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04124 RabL2 RabL2 subfamily

Probab=99.31  E-value=8.6e-12  Score=101.41  Aligned_cols=104  Identities=17%  Similarity=0.125  Sum_probs=61.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      .++.++||+|...........        ....|++++|+|++........    ..+...+.+.  ..+.++|+||+|+
T Consensus        49 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~----~~~~~~i~~~~~~~p~ivv~nK~Dl  116 (161)
T cd04124          49 ILVDFWDTAGQERFQTMHASY--------YHKAHACILVFDVTRKITYKNL----SKWYEELREYRPEIPCIVVANKIDL  116 (161)
T ss_pred             EEEEEEeCCCchhhhhhhHHH--------hCCCCEEEEEEECCCHHHHHHH----HHHHHHHHHhCCCCcEEEEEECccC
Confidence            456799999976543333222        2467889999999765432221    0122222222  4678999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      ....     ..+.....+..+               .+++.+|+++|.|++++...+.
T Consensus       117 ~~~~-----~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~  154 (161)
T cd04124         117 DPSV-----TQKKFNFAEKHN---------------LPLYYVSAADGTNVVKLFQDAI  154 (161)
T ss_pred             chhH-----HHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHH
Confidence            5321     111111111111               2467899999999998877664

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04127 Rab27A Rab27a subfamily

Probab=99.31  E-value=1.3e-11  Score=101.93  Aligned_cols=108  Identities=15%  Similarity=0.091  Sum_probs=64.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~  196 (293)
                      ..+.|+||||..........        ....++++++|+|..+........    .+...+.+.    ..+.++|.||+
T Consensus        63 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piiiv~nK~  130 (180)
T cd04127          63 IHLQLWDTAGQERFRSLTTA--------FFRDAMGFLLIFDLTNEQSFLNVR----NWMSQLQTHAYCENPDIVLCGNKA  130 (180)
T ss_pred             EEEEEEeCCChHHHHHHHHH--------HhCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEeCc
Confidence            45789999996543333222        124678899999998654332210    011112221    34679999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+....  ..++.....+..+               -.++.+|+++|.|++++..++.+
T Consensus       131 Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sak~~~~v~~l~~~l~~  174 (180)
T cd04127         131 DLEDQRQV--SEEQAKALADKYG---------------IPYFETSAATGTNVEKAVERLLD  174 (180)
T ss_pred             cchhcCcc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence            99764321  2233333333321               13578999999999999888753

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.31  E-value=8.8e-12  Score=103.65  Aligned_cols=112  Identities=18%  Similarity=0.105  Sum_probs=64.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.++||+|..........+        ...+|++|+|+|+++.........   .+...+..   -..+.++|.||.|
T Consensus        61 ~~~~l~D~~G~~~~~~~~~~~--------~~~ad~iI~v~D~t~~~s~~~~~~---~l~~~~~~~~~~~~piilv~NK~D  129 (182)
T PTZ00133         61 LKFTMWDVGGQDKLRPLWRHY--------YQNTNGLIFVVDSNDRERIGDARE---ELERMLSEDELRDAVLLVFANKQD  129 (182)
T ss_pred             EEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHHHHHHHHH---HHHHHHhCHhhcCCCEEEEEeCCC
Confidence            457899999976544433322        246788999999976432211110   01111111   1246789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..    ...++...+...  ..     ...   ...++.+||++|.|++++..|+.+
T Consensus       130 l~~~~----~~~~i~~~l~~~--~~-----~~~---~~~~~~~Sa~tg~gv~e~~~~l~~  175 (182)
T PTZ00133        130 LPNAM----STTEVTEKLGLH--SV-----RQR---NWYIQGCCATTAQGLYEGLDWLSA  175 (182)
T ss_pred             CCCCC----CHHHHHHHhCCC--cc-----cCC---cEEEEeeeCCCCCCHHHHHHHHHH
Confidence            86532    123333333210  00     000   113568899999999999999865

>cd04118 Rab24 Rab24 subfamily

Probab=99.30  E-value=1.4e-11  Score=103.06  Aligned_cols=109  Identities=13%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV  199 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~~  199 (293)
                      .+.|+||+|..........+        ....|.+++|+|.......... .   .+...+.+.  ..|.++|.||+|+.
T Consensus        51 ~l~i~D~~G~~~~~~~~~~~--------~~~~d~iilv~d~~~~~s~~~~-~---~~~~~i~~~~~~~piilv~nK~Dl~  118 (193)
T cd04118          51 TLGIWDTAGSERYEAMSRIY--------YRGAKAAIVCYDLTDSSSFERA-K---FWVKELQNLEEHCKIYLCGTKSDLI  118 (193)
T ss_pred             EEEEEECCCchhhhhhhHhh--------cCCCCEEEEEEECCCHHHHHHH-H---HHHHHHHhcCCCCCEEEEEEccccc
Confidence            35689999975433222211        1357889999999765432111 0   012222222  35789999999987


Q ss_pred             CCCCC--cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          200 SPERS--GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       200 ~~~~~--~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +..+.  ......+.+..+..+               ..++.+|+++|+|++++.+++.+
T Consensus       119 ~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~i~~  163 (193)
T cd04118         119 EQDRSLRQVDFHDVQDFADEIK---------------AQHFETSSKTGQNVDELFQKVAE  163 (193)
T ss_pred             ccccccCccCHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence            54311  011122222222111               23678999999999999988865

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.30  E-value=4.1e-12  Score=111.98  Aligned_cols=162  Identities=22%  Similarity=0.247  Sum_probs=96.6

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |.++|+||||||||++.+..+.    .-|-...|.+ ....--.+                                   
T Consensus       162 VGLVG~PNaGKSTlls~vS~Ak----PKIadYpFTT-L~PnLGvV-----------------------------------  201 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAK----PKIADYPFTT-LVPNLGVV-----------------------------------  201 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcC----CcccCCcccc-ccCcccEE-----------------------------------
Confidence            7899999999999999999653    2233333332 10000000                                   


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHH--HHhhh----cccCCchHHHHHHhcc
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKY----RHLSSYPEAIHQIAFA  188 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~--~~~~~----~~~~~~~~~~~qi~~a  188 (293)
                       .......+++-|-||+.+-++....+- ...+++..++.++++|||.+....  +....    .++..|.  ..-.+++
T Consensus       202 -~~~~~~sfv~ADIPGLIEGAs~G~GLG-~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~--~~L~~K~  277 (369)
T COG0536         202 -RVDGGESFVVADIPGLIEGASEGVGLG-LRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS--PKLAEKP  277 (369)
T ss_pred             -EecCCCcEEEecCcccccccccCCCcc-HHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh--HHhccCc
Confidence             001334589999999887655543332 455788889999999999875431  11111    1111111  1223568


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      -+||+||+|+..++   +.++.+.+.+......             .....+|+.+++|++.|...+.
T Consensus       278 ~ivv~NKiD~~~~~---e~~~~~~~~l~~~~~~-------------~~~~~ISa~t~~g~~~L~~~~~  329 (369)
T COG0536         278 RIVVLNKIDLPLDE---EELEELKKALAEALGW-------------EVFYLISALTREGLDELLRALA  329 (369)
T ss_pred             eEEEEeccCCCcCH---HHHHHHHHHHHHhcCC-------------CcceeeehhcccCHHHHHHHHH
Confidence            89999999976554   2456666666543221             1112299999999987775553

>cd04144 Ras2 Ras2 subfamily

Probab=99.30  E-value=1.8e-11  Score=102.42  Aligned_cols=107  Identities=18%  Similarity=0.122  Sum_probs=63.2

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEeC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILNK  195 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlNK  195 (293)
                      .+.|+||||......+...+        ....|++++|+|.++....... .   .+...+...      ..|.++|.||
T Consensus        48 ~l~i~Dt~G~~~~~~~~~~~--------~~~ad~~ilv~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~~~piilvgNK  115 (190)
T cd04144          48 MLEVLDTAGQEEYTALRDQW--------IREGEGFILVYSITSRSTFERV-E---RFREQIQRVKDESAADVPIMIVGNK  115 (190)
T ss_pred             EEEEEECCCchhhHHHHHHH--------HHhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHHhcccCCCCCEEEEEEC
Confidence            46789999975544333221        2457889999998765432211 0   011112111      2477889999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+......  .........+.++               ..++.+||++|.|++++..++.+
T Consensus       116 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~SAk~~~~v~~l~~~l~~  160 (190)
T cd04144         116 CDKVYEREV--STEEGAALARRLG---------------CEFIEASAKTNVNVERAFYTLVR  160 (190)
T ss_pred             hhccccCcc--CHHHHHHHHHHhC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence            999754321  1222222222221               13578999999999999888764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.29  E-value=7.3e-12  Score=121.94  Aligned_cols=112  Identities=13%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVS  200 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D~~~  200 (293)
                      .+.||||||...   +.     ..+......+|.+++|+|+..........     ....+..++.+. ++|+||+|+++
T Consensus        52 ~i~~IDtPGhe~---fi-----~~m~~g~~~~D~~lLVVda~eg~~~qT~e-----hl~il~~lgi~~iIVVlNKiDlv~  118 (614)
T PRK10512         52 VLGFIDVPGHEK---FL-----SNMLAGVGGIDHALLVVACDDGVMAQTRE-----HLAILQLTGNPMLTVALTKADRVD  118 (614)
T ss_pred             EEEEEECCCHHH---HH-----HHHHHHhhcCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCccCC
Confidence            367999999632   11     22234456789999999998654332211     233445555564 68999999986


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+.    ...+...++......        .+...+++++|+++|+|++.|.+++.+.
T Consensus       119 ~~~----~~~v~~ei~~~l~~~--------~~~~~~ii~VSA~tG~gI~~L~~~L~~~  164 (614)
T PRK10512        119 EAR----IAEVRRQVKAVLREY--------GFAEAKLFVTAATEGRGIDALREHLLQL  164 (614)
T ss_pred             HHH----HHHHHHHHHHHHHhc--------CCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence            432    233333333221110        0112458899999999999999998754

>cd04140 ARHI_like ARHI subfamily

Probab=99.29  E-value=2.9e-11  Score=98.61  Aligned_cols=108  Identities=18%  Similarity=0.088  Sum_probs=63.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN  194 (293)
                      ..+.++||||......+....        ....+.+++|+|..+....... .   .+.+.+.+.      ..|.++|.|
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~~~piilv~n  116 (165)
T cd04140          49 CTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSVTSKQSLEEL-K---PIYELICEIKGNNIEKIPIMLVGN  116 (165)
T ss_pred             EEEEEEECCCCCcchHHHHHH--------hhcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHHhcCCCCCCCEEEEEE
Confidence            456799999986544333211        2356788999998765432211 0   022223332      357899999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+|+.+..+.  .........+..+               ..++.+||++|+|++++..|+..
T Consensus       117 K~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         117 KCDESHKREV--SSNEGAACATEWN---------------CAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             CccccccCee--cHHHHHHHHHHhC---------------CcEEEeecCCCCCHHHHHHHHHh
Confidence            9999763321  1122222222111               24678999999999999888753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd00876 Ras Ras family

Probab=99.29  E-value=1e-11  Score=100.04  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=65.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.++|+||...........        ....+.+++|+|..+....... ...  +......   ...+.++++||+|
T Consensus        47 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-~~~--~~~~~~~~~~~~~p~ivv~nK~D  115 (160)
T cd00876          47 YTLDILDTAGQEEFSAMRDLY--------IRQGDGFILVYSITDRESFEEI-KGY--REQILRVKDDEDIPIVLVGNKCD  115 (160)
T ss_pred             EEEEEEECCChHHHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHH-HHH--HHHHHHhcCCCCCcEEEEEECCc
Confidence            456799999966543333221        2356889999998764432111 000  1111111   2467899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+...  ...+.+....+..+               ..++.+|+.++.|++++..++..
T Consensus       116 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876         116 LENERQ--VSKEEGKALAKEWG---------------CPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             ccccce--ecHHHHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHh
Confidence            986432  23344444444332               24678999999999999888753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.29  E-value=1.3e-11  Score=122.27  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=96.4

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..|.|+|+|+|..|+|||||+++|...    ++  ...+.+.   ++..                  .|...+.      
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~----~v--~~~e~~G---IT~~------------------iga~~v~------  333 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKT----NV--AAGEAGG---ITQH------------------IGAYQVE------  333 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhC----Cc--cccccCc---eeee------------------ccEEEEE------
Confidence            568999999999999999999999742    22  1122221   1110                  0111110      


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                               ..+..+.|+||||.........        .....+|.+|+|+|+..........     ..........+
T Consensus       334 ---------~~~~~ItfiDTPGhe~F~~m~~--------rga~~aDiaILVVdAddGv~~qT~e-----~i~~a~~~~vP  391 (787)
T PRK05306        334 ---------TNGGKITFLDTPGHEAFTAMRA--------RGAQVTDIVVLVVAADDGVMPQTIE-----AINHAKAAGVP  391 (787)
T ss_pred             ---------ECCEEEEEEECCCCccchhHHH--------hhhhhCCEEEEEEECCCCCCHhHHH-----HHHHHHhcCCc
Confidence                     1234578999999765433331        2235678999999997643222110     12223344578


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .++++||+|+.+..     ...+...+....-    +...++  ....++++||++|+|+++|.+++.
T Consensus       392 iIVviNKiDl~~a~-----~e~V~~eL~~~~~----~~e~~g--~~vp~vpvSAktG~GI~eLle~I~  448 (787)
T PRK05306        392 IIVAINKIDKPGAN-----PDRVKQELSEYGL----VPEEWG--GDTIFVPVSAKTGEGIDELLEAIL  448 (787)
T ss_pred             EEEEEECccccccC-----HHHHHHHHHHhcc----cHHHhC--CCceEEEEeCCCCCCchHHHHhhh
Confidence            99999999996542     3444444443211    100011  113578999999999999988875

>cd01892 Miro2 Miro2 subfamily

Probab=99.28  E-value=2.9e-11  Score=99.26  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=62.3

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD  197 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~D  197 (293)
                      .+.+.|++|..........        ....+|++++|+|++.......       ...+..++    ..|.++|+||+|
T Consensus        55 ~l~~~d~~g~~~~~~~~~~--------~~~~~d~~llv~d~~~~~s~~~-------~~~~~~~~~~~~~~p~iiv~NK~D  119 (169)
T cd01892          55 YLILREVGEDEVAILLNDA--------ELAACDVACLVYDSSDPKSFSY-------CAEVYKKYFMLGEIPCLFVAAKAD  119 (169)
T ss_pred             EEEEEecCCcccccccchh--------hhhcCCEEEEEEeCCCHHHHHH-------HHHHHHHhccCCCCeEEEEEEccc
Confidence            4678899986543221111        1257899999999976543211       12233332    468899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      +.+..+.  ......+..+.+              ....++.+||.+|+|++++...+.+..
T Consensus       120 l~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         120 LDEQQQR--YEVQPDEFCRKL--------------GLPPPLHFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             ccccccc--cccCHHHHHHHc--------------CCCCCEEEEeccCccHHHHHHHHHHHh
Confidence            8654311  011111111211              122357899999999998888776543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00157 Rho Rho (Ras homology) family

Probab=99.28  E-value=1.1e-11  Score=101.28  Aligned_cols=111  Identities=17%  Similarity=0.123  Sum_probs=64.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.++||||..+.......        .....+++++++|..+.........   .+...+.+.  ..|.++|.||+|+
T Consensus        48 ~~l~~~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ivv~nK~Dl  116 (171)
T cd00157          48 VNLGLWDTAGQEEYDRLRPL--------SYPNTDVFLICFSVDSPSSFENVKT---KWIPEIRHYCPNVPIILVGTKIDL  116 (171)
T ss_pred             EEEEEEeCCCcccccccchh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEEccHHh
Confidence            45789999997654222111        1146789999999987443222110   011122221  3678999999998


Q ss_pred             CCCCCCc---------chHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPERSG---------DSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~~~~---------~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+.....         .......+.....              ....++.+|+.+|.|++++..++.
T Consensus       117 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~  169 (171)
T cd00157         117 RDDENTLKKLEKGKEPITPEEGEKLAKEI--------------GAIGYMECSALTQEGVKEVFEEAI  169 (171)
T ss_pred             hhchhhhhhcccCCCccCHHHHHHHHHHh--------------CCeEEEEeecCCCCCHHHHHHHHh
Confidence            8654210         0111222222222              123578899999999999987764

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00369 Ras-like protein; Provisional

Probab=99.28  E-value=3.5e-11  Score=100.58  Aligned_cols=107  Identities=17%  Similarity=0.094  Sum_probs=64.3

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD  197 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~D  197 (293)
                      .+-|+||||..+...+...+.        ...+++++|+|.++...... ..   .+...+.+.    ..|.++|.||+|
T Consensus        54 ~l~i~Dt~G~~~~~~l~~~~~--------~~~d~iilv~D~s~~~s~~~-~~---~~~~~i~~~~~~~~~piiiv~nK~D  121 (189)
T PTZ00369         54 LLDILDTAGQEEYSAMRDQYM--------RTGQGFLCVYSITSRSSFEE-IA---SFREQILRVKDKDRVPMILVGNKCD  121 (189)
T ss_pred             EEEEEeCCCCccchhhHHHHh--------hcCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCCEEEEEECcc
Confidence            356899999877655443221        35788999999987543211 10   011122111    346799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+....  .........+..+               .+++.+||++|.|++++..|+.+
T Consensus       122 l~~~~~i--~~~~~~~~~~~~~---------------~~~~e~Sak~~~gi~~~~~~l~~  164 (189)
T PTZ00369        122 LDSERQV--STGEGQELAKSFG---------------IPFLETSAKQRVNVDEAFYELVR  164 (189)
T ss_pred             ccccccc--CHHHHHHHHHHhC---------------CEEEEeeCCCCCCHHHHHHHHHH
Confidence            8654321  1222223222221               23678999999999998888754

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.27  E-value=2.8e-11  Score=106.68  Aligned_cols=129  Identities=18%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             EEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      |+++|.+|+|||||+++|+.... -.+.+.+..  |+ ...|...... ..+      +.+..+..+|.           
T Consensus         2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~--~~-~~~D~~~~E~-~rg------iti~~~~~~~~-----------   60 (270)
T cd01886           2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHG--GG-ATMDFMEQER-ERG------ITIQSAATTCF-----------   60 (270)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCcccccccC--Cc-cccCCCcccc-CCC------cCeeccEEEEE-----------
Confidence            67999999999999999985310 112222221  11 1112111110 001      11111112111           


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEE
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL  193 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivl  193 (293)
                          ..+.++.+|||||..+....        .......+|.+++|+|+..........     ......+...|.++++
T Consensus        61 ----~~~~~i~liDTPG~~df~~~--------~~~~l~~aD~ailVVDa~~g~~~~t~~-----~~~~~~~~~~p~ivvi  123 (270)
T cd01886          61 ----WKDHRINIIDTPGHVDFTIE--------VERSLRVLDGAVAVFDAVAGVEPQTET-----VWRQADRYNVPRIAFV  123 (270)
T ss_pred             ----ECCEEEEEEECCCcHHHHHH--------HHHHHHHcCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEE
Confidence                23567899999997653222        123446678999999998754332211     2334455667899999


Q ss_pred             eCCCCCCC
Q 022736          194 NKVDLVSP  201 (293)
Q Consensus       194 NK~D~~~~  201 (293)
                      ||+|+.+.
T Consensus       124 NK~D~~~a  131 (270)
T cd01886         124 NKMDRTGA  131 (270)
T ss_pred             ECCCCCCC
Confidence            99998764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04176 Rap2 Rap2 subgroup

Probab=99.27  E-value=1.2e-11  Score=100.45  Aligned_cols=107  Identities=21%  Similarity=0.127  Sum_probs=62.6

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD  197 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~D  197 (293)
                      .+.|+||||......+....        ....|++++|+|..+....... .   .+...+.+    ...|.++|.||+|
T Consensus        50 ~l~i~Dt~G~~~~~~~~~~~--------~~~ad~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~piviv~nK~D  117 (163)
T cd04176          50 VLEILDTAGTEQFASMRDLY--------IKNGQGFIVVYSLVNQQTFQDI-K---PMRDQIVRVKGYEKVPIILVGNKVD  117 (163)
T ss_pred             EEEEEECCCcccccchHHHH--------HhhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCCEEEEEECcc
Confidence            35689999975544443322        1457889999998765432111 0   01222222    2467899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+....  .........+..+               ..++.+||++|.|++++..++..
T Consensus       118 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176         118 LESEREV--SSAEGRALAEEWG---------------CPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             chhcCcc--CHHHHHHHHHHhC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence            8654321  1122222222111               23578999999999999888753

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.27  E-value=2.4e-11  Score=102.34  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=64.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      .++.++||||+.+.....+.++ ..  ......|.++++.|.. +......      +...+.+...+.++|+||+|+..
T Consensus        52 ~~l~l~DtpG~~~~~~~~~~~l-~~--~~~~~~d~~l~v~~~~-~~~~d~~------~~~~l~~~~~~~ilV~nK~D~~~  121 (197)
T cd04104          52 PNVTLWDLPGIGSTAFPPDDYL-EE--MKFSEYDFFIIISSTR-FSSNDVK------LAKAIQCMGKKFYFVRTKVDRDL  121 (197)
T ss_pred             CCceEEeCCCCCcccCCHHHHH-HH--hCccCcCEEEEEeCCC-CCHHHHH------HHHHHHHhCCCEEEEEecccchh
Confidence            4678999999876432222221 11  1124577777776543 3221111      23445555678899999999864


Q ss_pred             CCC---------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC--Ccchhhhhhhhhh
Q 022736          201 PER---------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY--DATHVTRLEGLLE  256 (293)
Q Consensus       201 ~~~---------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~--~~~~~~~l~~~l~  256 (293)
                      ..+         ....+.++++.+....+..        ......+|.+|+.  .+.++..|.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~--------~~~~p~v~~vS~~~~~~~~~~~l~~~~~  180 (197)
T cd04104         122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEA--------GVSEPPVFLVSNFDPSDYDFPKLRETLL  180 (197)
T ss_pred             hhhhccccccccHHHHHHHHHHHHHHHHHHc--------CCCCCCEEEEeCCChhhcChHHHHHHHH
Confidence            322         1123444444444333211        1234678899998  4566777766654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04116 Rab9 Rab9 subfamily

Probab=99.27  E-value=3e-11  Score=98.84  Aligned_cols=107  Identities=18%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHHH------HhccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQ------IAFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~q------i~~a~iivl  193 (293)
                      ..+.|+||||......+....        ....+++++++|..+....... .   .+.. ....      -..|.++|.
T Consensus        54 ~~l~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~~~~piilv~  121 (170)
T cd04116          54 VTLQIWDTAGQERFRSLRTPF--------YRGSDCCLLTFAVDDSQSFQNL-S---NWKKEFIYYADVKEPESFPFVVLG  121 (170)
T ss_pred             EEEEEEeCCChHHHHHhHHHH--------hcCCCEEEEEEECCCHHHHHhH-H---HHHHHHHHhcccccCCCCcEEEEE
Confidence            457799999965433333221        1356778888887654321110 0   0111 1110      124779999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      ||+|+.+..   ....++.+..+..+.              ..++.+||++|.|+.++..++.
T Consensus       122 nK~Dl~~~~---~~~~~~~~~~~~~~~--------------~~~~e~Sa~~~~~v~~~~~~~~  167 (170)
T cd04116         122 NKNDIPERQ---VSTEEAQAWCRENGD--------------YPYFETSAKDATNVAAAFEEAV  167 (170)
T ss_pred             ECccccccc---cCHHHHHHHHHHCCC--------------CeEEEEECCCCCCHHHHHHHHH
Confidence            999986432   233455555544321              2467899999999988877664

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.26  E-value=2.7e-11  Score=95.78  Aligned_cols=155  Identities=19%  Similarity=0.223  Sum_probs=98.6

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      +.+.|..||||||++++|+    +..+-.+++.+|-  ++....                                    
T Consensus        19 iLiLGLdNsGKTti~~kl~----~~~~~~i~pt~gf--~Iktl~------------------------------------   56 (185)
T KOG0073|consen   19 ILILGLDNSGKTTIVKKLL----GEDTDTISPTLGF--QIKTLE------------------------------------   56 (185)
T ss_pred             EEEEecCCCCchhHHHHhc----CCCccccCCccce--eeEEEE------------------------------------
Confidence            5678999999999999999    4444556666553  221110                                    


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN  194 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN  194 (293)
                         ...+.+.+.|-.|.....+++.+++        ...|++|+|+|++....-..-...+.....--+-++.+.+++.|
T Consensus        57 ---~~~~~L~iwDvGGq~~lr~~W~nYf--------estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlan  125 (185)
T KOG0073|consen   57 ---YKGYTLNIWDVGGQKTLRSYWKNYF--------ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLAN  125 (185)
T ss_pred             ---ecceEEEEEEcCCcchhHHHHHHhh--------hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEe
Confidence               2456789999999988887776654        56789999999976543322211111111111223457899999


Q ss_pred             CCCCCCCCCCcchHHHHHHH--HHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKE--IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~--l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |.|+..+-    ..+.+...  |..+.+..           -.+++.+|+.+|+++.+-.+|+..
T Consensus       126 k~dl~~~l----~~~~i~~~~~L~~l~ks~-----------~~~l~~cs~~tge~l~~gidWL~~  175 (185)
T KOG0073|consen  126 KQDLPGAL----SLEEISKALDLEELAKSH-----------HWRLVKCSAVTGEDLLEGIDWLCD  175 (185)
T ss_pred             cCcCcccc----CHHHHHHhhCHHHhcccc-----------CceEEEEeccccccHHHHHHHHHH
Confidence            99987543    23444422  23332221           146788999999888877888754

>cd01893 Miro1 Miro1 subfamily

Probab=99.26  E-value=3e-11  Score=98.63  Aligned_cols=114  Identities=12%  Similarity=0.140  Sum_probs=63.7

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVD  197 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D  197 (293)
                      ..++.++||||..+......        ......|.+++|+|..+.........   .+...+.+.  ..+.++|.||+|
T Consensus        46 ~~~~~i~Dt~G~~~~~~~~~--------~~~~~ad~~ilv~d~~~~~s~~~~~~---~~~~~i~~~~~~~pviiv~nK~D  114 (166)
T cd01893          46 RVPTTIVDTSSRPQDRANLA--------AEIRKANVICLVYSVDRPSTLERIRT---KWLPLIRRLGVKVPIILVGNKSD  114 (166)
T ss_pred             eEEEEEEeCCCchhhhHHHh--------hhcccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEchh
Confidence            35678999999765333221        11256788999999876443221000   011112211  457899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..........+....+..+.             ...++.+||+++.|++++...+.+
T Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~e~Sa~~~~~v~~lf~~~~~  161 (166)
T cd01893         115 LRDGSSQAGLEEEMLPIMNEFRE-------------IETCVECSAKTLINVSEVFYYAQK  161 (166)
T ss_pred             cccccchhHHHHHHHHHHHHHhc-------------ccEEEEeccccccCHHHHHHHHHH
Confidence            97654210001111111222211             124678999999999988776654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.26  E-value=2e-11  Score=118.35  Aligned_cols=133  Identities=21%  Similarity=0.210  Sum_probs=70.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC-ccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~-~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      ..|.|+++++|..|+|||||+++|...      .+...++|. +..+....+...        ..+-..|        ..
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~------~v~~~~~g~itq~ig~~~~~~~--------~~~~~~~--------~~   60 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGT------AVAAKEAGGITQHIGATEVPID--------VIEKIAG--------PL   60 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCc------ccccCCCCceEEeeceeecccc--------ccccccc--------ee
Confidence            458999999999999999999999732      222333332 000000000000        0000000        00


Q ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                      ...   +-....-+.+.|+||||.........        ......|.+++|+|+..........     ....+.....
T Consensus        61 ~~~---~~~~~~~~~i~~iDTPG~e~f~~~~~--------~~~~~aD~~IlVvDa~~g~~~qt~e-----~i~~~~~~~v  124 (586)
T PRK04004         61 KKP---LPIKLKIPGLLFIDTPGHEAFTNLRK--------RGGALADIAILVVDINEGFQPQTIE-----AINILKRRKT  124 (586)
T ss_pred             ccc---cccccccCCEEEEECCChHHHHHHHH--------HhHhhCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCC
Confidence            000   00000112478999999765433321        1224678999999998642221110     1223344567


Q ss_pred             cCEEEEeCCCCC
Q 022736          188 ADVVILNKVDLV  199 (293)
Q Consensus       188 a~iivlNK~D~~  199 (293)
                      +.++++||+|+.
T Consensus       125 piIvviNK~D~~  136 (586)
T PRK04004        125 PFVVAANKIDRI  136 (586)
T ss_pred             CEEEEEECcCCc
Confidence            889999999986

>cd04125 RabA_like RabA-like subfamily

Probab=99.26  E-value=3.7e-11  Score=100.17  Aligned_cols=108  Identities=15%  Similarity=0.134  Sum_probs=62.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||+|..........        ....++++++|+|..+...... ...   +...+.+.   ..+.+++.||+|
T Consensus        49 ~~~~i~Dt~g~~~~~~~~~~--------~~~~~d~iilv~d~~~~~s~~~-i~~---~~~~i~~~~~~~~~~ivv~nK~D  116 (188)
T cd04125          49 IKLQIWDTNGQERFRSLNNS--------YYRGAHGYLLVYDVTDQESFEN-LKF---WINEINRYARENVIKVIVANKSD  116 (188)
T ss_pred             EEEEEEECCCcHHHHhhHHH--------HccCCCEEEEEEECcCHHHHHH-HHH---HHHHHHHhCCCCCeEEEEEECCC
Confidence            34679999996543322221        1246789999999986543221 110   11222222   135688999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+....  .........+..              . -.++.+|++++.|++++..++.+
T Consensus       117 l~~~~~v--~~~~~~~~~~~~--------------~-~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125         117 LVNNKVV--DSNIAKSFCDSL--------------N-IPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             CcccccC--CHHHHHHHHHHc--------------C-CeEEEEeCCCCCCHHHHHHHHHH
Confidence            8754321  122222222211              1 14678999999999988877754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.26  E-value=2.2e-11  Score=118.10  Aligned_cols=113  Identities=12%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLV  199 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~~  199 (293)
                      ..+.||||||....   .     ..+......+|.+++|+|+.........     +....+...+.+ .++++||+|++
T Consensus        50 ~~v~~iDtPGhe~f---~-----~~~~~g~~~aD~aILVVDa~~G~~~qT~-----ehl~il~~lgi~~iIVVlNK~Dlv  116 (581)
T TIGR00475        50 YRLGFIDVPGHEKF---I-----SNAIAGGGGIDAALLVVDADEGVMTQTG-----EHLAVLDLLGIPHTIVVITKADRV  116 (581)
T ss_pred             EEEEEEECCCHHHH---H-----HHHHhhhccCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEECCCCC
Confidence            45789999995321   1     2223445678999999999864322111     123344555667 89999999998


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+......+++.+.++...-           ....+++++|+++|+|++++..++..
T Consensus       117 ~~~~~~~~~~ei~~~l~~~~~-----------~~~~~ii~vSA~tG~GI~eL~~~L~~  163 (581)
T TIGR00475       117 NEEEIKRTEMFMKQILNSYIF-----------LKNAKIFKTSAKTGQGIGELKKELKN  163 (581)
T ss_pred             CHHHHHHHHHHHHHHHHHhCC-----------CCCCcEEEEeCCCCCCchhHHHHHHH
Confidence            754210112233333332210           01246789999999999988877754

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.25  E-value=2.2e-11  Score=100.23  Aligned_cols=108  Identities=17%  Similarity=0.092  Sum_probs=65.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~  196 (293)
                      ..+.|+||+|..+...+....+        ...+++++|+|..+........    .+...+.+.    ..|.++|.||+
T Consensus        50 ~~l~i~Dt~G~~~~~~l~~~~~--------~~~d~~ilv~d~~~~~Sf~~~~----~~~~~i~~~~~~~~~piilvgNK~  117 (172)
T cd04141          50 ALLDILDTAGQAEFTAMRDQYM--------RCGEGFIICYSVTDRHSFQEAS----EFKKLITRVRLTEDIPLVLVGNKV  117 (172)
T ss_pred             EEEEEEeCCCchhhHHHhHHHh--------hcCCEEEEEEECCchhHHHHHH----HHHHHHHHhcCCCCCCEEEEEECh
Confidence            3467999999766544443221        3568899999987654432211    012222222    35789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+..+.  ..++..+..+..+               ..++.+||++|.|++++..|+..
T Consensus       118 Dl~~~~~v--~~~~~~~~a~~~~---------------~~~~e~Sa~~~~~v~~~f~~l~~  161 (172)
T cd04141         118 DLESQRQV--TTEEGRNLAREFN---------------CPFFETSAALRHYIDDAFHGLVR  161 (172)
T ss_pred             hhhhcCcc--CHHHHHHHHHHhC---------------CEEEEEecCCCCCHHHHHHHHHH
Confidence            98654322  2233333333221               24678999999999999888854

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.25  E-value=1.9e-11  Score=120.13  Aligned_cols=166  Identities=17%  Similarity=0.193  Sum_probs=96.2

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCC-CccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG-EEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g-~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      ..+.|+|+|+|..|+|||||+++|....    ++.  .+.+ .+..+....+.             +.            
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~----~~~--~e~~GiTq~i~~~~v~-------------~~------------  289 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQ----IAQ--KEAGGITQKIGAYEVE-------------FE------------  289 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhcc----Ccc--ccCCccccccceEEEE-------------EE------------
Confidence            4589999999999999999999998431    111  1111 10000000000             00            


Q ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                              ....+..+.|+||||........        ......+|.+++|+|+.........     .....+.....
T Consensus       290 --------~~~~~~kItfiDTPGhe~F~~mr--------~rg~~~aDiaILVVDA~dGv~~QT~-----E~I~~~k~~~i  348 (742)
T CHL00189        290 --------YKDENQKIVFLDTPGHEAFSSMR--------SRGANVTDIAILIIAADDGVKPQTI-----EAINYIQAANV  348 (742)
T ss_pred             --------ecCCceEEEEEECCcHHHHHHHH--------HHHHHHCCEEEEEEECcCCCChhhH-----HHHHHHHhcCc
Confidence                    00123568899999964332222        1233568899999999764322111     01222334456


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |.++++||+|+.+..     ..++...++.....    ....+  ...+++++||++|.|+++|.+++..
T Consensus       349 PiIVViNKiDl~~~~-----~e~v~~eL~~~~ll----~e~~g--~~vpvv~VSAktG~GIdeLle~I~~  407 (742)
T CHL00189        349 PIIVAINKIDKANAN-----TERIKQQLAKYNLI----PEKWG--GDTPMIPISASQGTNIDKLLETILL  407 (742)
T ss_pred             eEEEEEECCCccccC-----HHHHHHHHHHhccc----hHhhC--CCceEEEEECCCCCCHHHHHHhhhh
Confidence            889999999997642     34555555433110    00011  1235789999999999999888754

>cd04177 RSR1 RSR1 subgroup

Probab=99.25  E-value=2.4e-11  Score=99.40  Aligned_cols=108  Identities=15%  Similarity=0.046  Sum_probs=62.5

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD  197 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~D  197 (293)
                      .+.++||||......+.+...        ...+.+++|+|..+........    .+...+.+    -..|.+++.||+|
T Consensus        50 ~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~vlv~~~~~~~s~~~~~----~~~~~i~~~~~~~~~piiiv~nK~D  117 (168)
T cd04177          50 DLEILDTAGTEQFTAMRELYI--------KSGQGFLLVYSVTSEASLNELG----ELREQVLRIKDSDNVPMVLVGNKAD  117 (168)
T ss_pred             EEEEEeCCCcccchhhhHHHH--------hhCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCCCCCCEEEEEEChh
Confidence            467999999766544443221        3467788899887643322110    01222222    1356789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+....  ..+...+..+..+              ...++.+||+++.|++++..++..
T Consensus       118 ~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~SA~~~~~i~~~f~~i~~  161 (168)
T cd04177         118 LEDDRQV--SREDGVSLSQQWG--------------NVPFYETSARKRTNVDEVFIDLVR  161 (168)
T ss_pred             ccccCcc--CHHHHHHHHHHcC--------------CceEEEeeCCCCCCHHHHHHHHHH
Confidence            8754321  2222222222211              124678999999999988887753

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.25  E-value=1e-10  Score=97.31  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=63.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      ..+.|+||||......+...        ....+|++++|+|.++........      ..+...+     ..|.++|.||
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~ii~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~piilv~nK  114 (187)
T cd04132          49 IELALWDTAGQEEYDRLRPL--------SYPDVDVLLICYAVDNPTSLDNVE------DKWFPEVNHFCPGTPIMLVGLK  114 (187)
T ss_pred             EEEEEEECCCchhHHHHHHH--------hCCCCCEEEEEEECCCHHHHHHHH------HHHHHHHHHhCCCCCEEEEEeC
Confidence            35679999996543332221        124678999999998654322110      0122111     3578999999


Q ss_pred             CCCCCCCCC--cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERS--GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~--~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.+....  .....+..+..+..+              ...++.+|+++|.|++++..++..
T Consensus       115 ~Dl~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~  164 (187)
T cd04132         115 TDLRKDKNLDRKVTPAQAESVAKKQG--------------AFAYLECSAKTMENVEEVFDTAIE  164 (187)
T ss_pred             hhhhhCccccCCcCHHHHHHHHHHcC--------------CcEEEEccCCCCCCHHHHHHHHHH
Confidence            998753210  011233333333221              124688999999999988877754

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.25  E-value=2.2e-11  Score=102.56  Aligned_cols=110  Identities=16%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHH---HHhccCEEEEeCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIH---QIAFADVVILNKVD  197 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~---qi~~a~iivlNK~D  197 (293)
                      .+.|+||||......+...        ....+|++++|+|+.......... .   +.. +..   ....|.++|+||+|
T Consensus        48 ~l~i~D~~G~~~~~~~~~~--------~~~~ad~vilv~d~~~~~s~~~~~-~---~~~~i~~~~~~~~~piilv~NK~D  115 (198)
T cd04147          48 TLDILDTSGSYSFPAMRKL--------SIQNSDAFALVYAVDDPESFEEVE-R---LREEILEVKEDKFVPIVVVGNKAD  115 (198)
T ss_pred             EEEEEECCCchhhhHHHHH--------HhhcCCEEEEEEECCCHHHHHHHH-H---HHHHHHHhcCCCCCcEEEEEEccc
Confidence            4679999997654333221        124678999999997654322110 0   111 111   12468899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+.+.. .......+... ....             ..++.+|+++|.|++++.+++...
T Consensus       116 l~~~~~~-v~~~~~~~~~~-~~~~-------------~~~~~~Sa~~g~gv~~l~~~l~~~  161 (198)
T cd04147         116 SLEEERQ-VPAKDALSTVE-LDWN-------------CGFVETSAKDNENVLEVFKELLRQ  161 (198)
T ss_pred             ccccccc-ccHHHHHHHHH-hhcC-------------CcEEEecCCCCCCHHHHHHHHHHH
Confidence            8764211 11112221111 1100             235779999999999999888653

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=99.25  E-value=5.4e-11  Score=100.55  Aligned_cols=109  Identities=18%  Similarity=0.117  Sum_probs=65.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      .++.|+||+|......+...+.        ..++++|+|+|.++....... .   .+...+.+.   ..+.++|.||+|
T Consensus        49 v~l~iwDtaGqe~~~~l~~~y~--------~~ad~iIlVfDvtd~~Sf~~l-~---~w~~~i~~~~~~~~piilVgNK~D  116 (202)
T cd04120          49 IRLQIWDTAGQERFNSITSAYY--------RSAKGIILVYDITKKETFDDL-P---KWMKMIDKYASEDAELLLVGNKLD  116 (202)
T ss_pred             EEEEEEeCCCchhhHHHHHHHh--------cCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCCcEEEEEECcc
Confidence            4578999999765544443222        467889999999876543221 1   122223322   246789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ......+..+.+. .             ..++.+||++|.|++++..|+..
T Consensus       117 L~~~~~v--~~~~~~~~a~~~~-~-------------~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120         117 CETDREI--SRQQGEKFAQQIT-G-------------MRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ccccccc--CHHHHHHHHHhcC-C-------------CEEEEecCCCCCCHHHHHHHHHH
Confidence            8754332  2222222222211 0             23678999999999988877753

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.24  E-value=1.2e-10  Score=93.60  Aligned_cols=141  Identities=23%  Similarity=0.287  Sum_probs=79.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCC--Ccch---hhhhhccCcceeeccchh
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEG--GALV---EEWVELANGCICCTVKHS  106 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~--~~~~---~~~~~l~~gcicc~~~~~  106 (293)
                      ++.++|+.||||||++..+...  ..+.++.++..|++.... ....+.....  ....   -....++.|+.+-.....
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFS-GGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRA   79 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCc-ccchhcCceEhhheecCCCceEEEcCCcCcccccchh
Confidence            3788999999999999999774  568899999999875221 1111111000  0000   001112222222222222


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                      ..+.+ +.+. ..++|++||||+|.....  ..         .....|.++.++.++....+         .........
T Consensus        80 ~~~~~-~~~~-~~~~D~iiIDtaG~~~~~--~~---------~~~~Ad~~ivv~tpe~~D~y---------~~~k~~~~~  137 (148)
T cd03114          80 TPEVI-RVLD-AAGFDVIIVETVGVGQSE--VD---------IASMADTTVVVMAPGAGDDI---------QAIKAGIME  137 (148)
T ss_pred             HHHHH-HHHH-hcCCCEEEEECCccChhh--hh---------HHHhCCEEEEEECCCchhHH---------HHhhhhHhh
Confidence            33333 3333 257999999999976332  11         11345667787777622221         112234556


Q ss_pred             ccCEEEEeCCC
Q 022736          187 FADVVILNKVD  197 (293)
Q Consensus       187 ~a~iivlNK~D  197 (293)
                      .||++++||+|
T Consensus       138 ~~~~~~~~k~~  148 (148)
T cd03114         138 IADIVVVNKAD  148 (148)
T ss_pred             hcCEEEEeCCC
Confidence            79999999997

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=99.23  E-value=1.2e-11  Score=101.96  Aligned_cols=161  Identities=17%  Similarity=0.272  Sum_probs=95.7

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCcc-----ccc-hhhhhcCCCCcchhhhhhccCcceeeccchh
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVE-RAMINEGEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~-----~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      ..+.|+.||||||+.+.+.++  ..|+...+|+.||..+.     .+| |++++-  +.+.++-..--++|-+.|-  +.
T Consensus         6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsv--dDVmEdl~~GPNGgLv~cm--Ey   81 (273)
T KOG1534|consen    6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISV--DDVMEDLDLGPNGGLVYCM--EY   81 (273)
T ss_pred             EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccH--HHHHHHhccCCCccchhHH--HH
Confidence            467999999999999999886  67999999999997622     222 222211  1111111122245555562  12


Q ss_pred             HHHHHHHHHhhcC--CCCEEEEecCCCCC---cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736          107 LVQALEQLVQRKE--RLDHILLETTGLAN---PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA  181 (293)
Q Consensus       107 l~~~l~~l~~~~~--~~d~iiidt~G~~~---~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~  181 (293)
                      +.+.+.-+....+  .-+|+++|+||..+   ..+++..+. +..-+..+++ ++++++|+.-..+.....+.-..+..+
T Consensus        82 l~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv-~hl~~~~F~~-c~Vylldsqf~vD~~KfiSG~lsAlsA  159 (273)
T KOG1534|consen   82 LLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIV-EHLKQWNFNV-CVVYLLDSQFLVDSTKFISGCLSALSA  159 (273)
T ss_pred             HHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHH-HHHhcccCce-eEEEEeccchhhhHHHHHHHHHHHHHH
Confidence            3333333333333  56899999999544   445555443 1111223455 578888886444332222222223456


Q ss_pred             HHHHhccCEEEEeCCCCCCC
Q 022736          182 IHQIAFADVVILNKVDLVSP  201 (293)
Q Consensus       182 ~~qi~~a~iivlNK~D~~~~  201 (293)
                      +.+++.|.+-|++|.|+++.
T Consensus       160 Mi~lE~P~INvlsKMDLlk~  179 (273)
T KOG1534|consen  160 MISLEVPHINVLSKMDLLKD  179 (273)
T ss_pred             HHHhcCcchhhhhHHHHhhh
Confidence            67889999999999999975

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.23  E-value=1.2e-10  Score=95.76  Aligned_cols=108  Identities=18%  Similarity=0.096  Sum_probs=61.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---h----ccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---A----FADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~----~a~iivl  193 (293)
                      ..+.|+||||......+...        ....+|.+++|+|+........       ...++.++   .    .+.++|.
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~~ilv~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~~iilVg  113 (170)
T cd04108          49 FSLQLWDTAGQERFKCIAST--------YYRGAQAIIIVFDLTDVASLEH-------TRQWLEDALKENDPSSVLLFLVG  113 (170)
T ss_pred             EEEEEEeCCChHHHHhhHHH--------HhcCCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCCCCCeEEEEE
Confidence            35779999997543333322        1246889999999976432211       11222221   1    2358999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ||+|+.+..+.........+..++++               ..++.+||++|.|++++...+.+.
T Consensus       114 nK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~~e~Sa~~g~~v~~lf~~l~~~  163 (170)
T cd04108         114 TKKDLSSPAQYALMEQDAIKLAAEMQ---------------AEYWSVSALSGENVREFFFRVAAL  163 (170)
T ss_pred             EChhcCccccccccHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHHH
Confidence            99998654321001112222222221               235678999999999988777543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.23  E-value=1.1e-10  Score=113.41  Aligned_cols=127  Identities=18%  Similarity=0.155  Sum_probs=74.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      ..+.|+||||..+......        .....+|++++|+|+..........     ..........+.++++||+|+.+
T Consensus        70 ~~l~liDTPG~~dF~~~v~--------~~l~~aD~aILVvDat~g~~~qt~~-----~~~~~~~~~ipiIiViNKiDl~~  136 (595)
T TIGR01393        70 YVLNLIDTPGHVDFSYEVS--------RSLAACEGALLLVDAAQGIEAQTLA-----NVYLALENDLEIIPVINKIDLPS  136 (595)
T ss_pred             EEEEEEECCCcHHHHHHHH--------HHHHhCCEEEEEecCCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCCc
Confidence            5678999999876543332        1234678999999998643222110     01111223467899999999865


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEe
Q 022736          201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSIC  277 (293)
Q Consensus       201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  277 (293)
                      ..     ...+.+.++....           .+..+++.+||++|.|++++.+++.+....|. ...+.+++.+++.
T Consensus       137 ~~-----~~~~~~el~~~lg-----------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~-~~~~~pl~~~V~~  196 (595)
T TIGR01393       137 AD-----PERVKKEIEEVIG-----------LDASEAILASAKTGIGIEEILEAIVKRVPPPK-GDPDAPLKALIFD  196 (595)
T ss_pred             cC-----HHHHHHHHHHHhC-----------CCcceEEEeeccCCCCHHHHHHHHHHhCCCCC-CCCCCCeEEEEEE
Confidence            32     1233333333221           11235789999999999999998865433232 1233445555543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.22  E-value=8.7e-11  Score=96.35  Aligned_cols=112  Identities=13%  Similarity=0.114  Sum_probs=62.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.++||||......+...        .....+++++|+|..+.........   .+...+.+.  ..|.++|.||+|+
T Consensus        46 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl  114 (174)
T smart00174       46 VELGLWDTAGQEDYDRLRPL--------SYPDTDVFLICFSVDSPASFENVKE---KWYPEVKHFCPNTPIILVGTKLDL  114 (174)
T ss_pred             EEEEEEECCCCcccchhchh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEecChhh
Confidence            45789999997544332221        1246789999999986543221100   011112211  4678999999998


Q ss_pred             CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+....          ....++..+..+..              ....++.+|+++|.|++++...+..
T Consensus       115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~lf~~l~~  169 (174)
T smart00174      115 REDKSTLRELSKQKQEPVTYEQGEALAKRI--------------GAVKYLECSALTQEGVREVFEEAIR  169 (174)
T ss_pred             hhChhhhhhhhcccCCCccHHHHHHHHHHc--------------CCcEEEEecCCCCCCHHHHHHHHHH
Confidence            753210          00011111122211              2234678999999999988877653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04148 RGK RGK subfamily

Probab=99.22  E-value=4.6e-11  Score=102.43  Aligned_cols=108  Identities=11%  Similarity=0.028  Sum_probs=63.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~  196 (293)
                      .++.|+||||...   ......    +.  ...|++++|+|..+....... .   .+...+.+    ...|.++|.||+
T Consensus        50 ~~l~i~Dt~G~~~---~~~~~~----~~--~~ad~iilV~d~td~~S~~~~-~---~~~~~l~~~~~~~~~piilV~NK~  116 (221)
T cd04148          50 STLVVIDHWEQEM---WTEDSC----MQ--YQGDAFVVVYSVTDRSSFERA-S---ELRIQLRRNRQLEDRPIILVGNKS  116 (221)
T ss_pred             EEEEEEeCCCcch---HHHhHH----hh--cCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCCEEEEEECh
Confidence            4578999999761   111111    10  168899999999876432211 0   01122222    235789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+.+..+.  ..+...+.....              + ..++.+||.++.|++++.+++...
T Consensus       117 Dl~~~~~v--~~~~~~~~a~~~--------------~-~~~~e~SA~~~~gv~~l~~~l~~~  161 (221)
T cd04148         117 DLARSREV--SVQEGRACAVVF--------------D-CKFIETSAGLQHNVDELLEGIVRQ  161 (221)
T ss_pred             hcccccee--cHHHHHHHHHHc--------------C-CeEEEecCCCCCCHHHHHHHHHHH
Confidence            98765421  122222221111              1 235789999999999999888653

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.22  E-value=1.2e-10  Score=95.14  Aligned_cols=72  Identities=21%  Similarity=0.097  Sum_probs=43.2

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-HhccCEEEEeCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-IAFADVVILNKVDL  198 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-i~~a~iivlNK~D~  198 (293)
                      +..+.++||+|......+....        ...+|++++|+|+...........   .+...... -..|.++|.||+|+
T Consensus        43 ~~~l~i~Dt~G~~~~~~~~~~~--------~~~ad~ii~V~D~t~~~s~~~~~~---~l~~~~~~~~~~piilv~NK~Dl  111 (164)
T cd04162          43 DAIMELLEIGGSQNLRKYWKRY--------LSGSQGLIFVVDSADSERLPLARQ---ELHQLLQHPPDLPLVVLANKQDL  111 (164)
T ss_pred             CeEEEEEECCCCcchhHHHHHH--------HhhCCEEEEEEECCCHHHHHHHHH---HHHHHHhCCCCCcEEEEEeCcCC
Confidence            4567899999976654444322        246788999999987543211100   01111111 23568999999998


Q ss_pred             CCCC
Q 022736          199 VSPE  202 (293)
Q Consensus       199 ~~~~  202 (293)
                      .++.
T Consensus       112 ~~~~  115 (164)
T cd04162         112 PAAR  115 (164)
T ss_pred             cCCC
Confidence            6543

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.21  E-value=8.7e-11  Score=100.60  Aligned_cols=103  Identities=14%  Similarity=0.065  Sum_probs=63.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      ..+.|+||+|......+...+        ....+++|+|+|.++......       ...++.++     ..+.++|.||
T Consensus        62 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilvfD~~~~~s~~~-------i~~w~~~i~~~~~~~piilvgNK  126 (219)
T PLN03071         62 IRFYCWDTAGQEKFGGLRDGY--------YIHGQCAIIMFDVTARLTYKN-------VPTWHRDLCRVCENIPIVLCGNK  126 (219)
T ss_pred             EEEEEEECCCchhhhhhhHHH--------cccccEEEEEEeCCCHHHHHH-------HHHHHHHHHHhCCCCcEEEEEEc
Confidence            457899999976654433222        135678999999987654322       11222222     3578999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.+...   ..+.+ ...+. +              ...++.+||++|.|++++..|+..
T Consensus       127 ~Dl~~~~v---~~~~~-~~~~~-~--------------~~~~~e~SAk~~~~i~~~f~~l~~  169 (219)
T PLN03071        127 VDVKNRQV---KAKQV-TFHRK-K--------------NLQYYEISAKSNYNFEKPFLYLAR  169 (219)
T ss_pred             hhhhhccC---CHHHH-HHHHh-c--------------CCEEEEcCCCCCCCHHHHHHHHHH
Confidence            99864321   11222 11111 0              023578999999999999888864

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.21  E-value=2.9e-11  Score=113.59  Aligned_cols=111  Identities=14%  Similarity=0.264  Sum_probs=60.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc--hHHHHhhhcccCCchHHHHHHhc-cCEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIAF-ADVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~qi~~-a~iivlNK  195 (293)
                      ++..+.|+||||..+...        ........+|.+++|+|+..  .......     ........... +.++++||
T Consensus        82 ~~~~i~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvDa~~~~~~~~~~~-----~~~~~~~~~~~~~iivviNK  148 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVK--------NMITGASQADAAVLVVAADDAGGVMPQTR-----EHVFLARTLGINQLIVAINK  148 (425)
T ss_pred             CCeEEEEEECCCcccchh--------hHhhchhcCCEEEEEEEcccCCCCCcchH-----HHHHHHHHcCCCeEEEEEEc
Confidence            456789999999643211        11233457899999999975  2211110     01222333343 46889999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                      +|+.+..+  .....+.+.++.+......      ......++++||++|+|+++
T Consensus       149 ~Dl~~~~~--~~~~~~~~~i~~~l~~~g~------~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        149 MDAVNYDE--KRYEEVKEEVSKLLKMVGY------KPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             cccccccH--HHHHHHHHHHHHHHHhhCC------CcCcceEEEeecccCCCccc
Confidence            99986321  1122233333322111000      00113578999999999875

>cd04126 Rab20 Rab20 subfamily

Probab=99.21  E-value=1.3e-10  Score=99.39  Aligned_cols=124  Identities=15%  Similarity=0.090  Sum_probs=67.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~  198 (293)
                      +++.|+||+|......+...+        ...++++|+|+|.+..........   .+......  -..+.++|.||+|+
T Consensus        44 ~~l~iwDt~G~e~~~~l~~~~--------~~~ad~~IlV~Dvt~~~Sf~~l~~---~~~~l~~~~~~~~piIlVgNK~DL  112 (220)
T cd04126          44 YNISIWDTAGREQFHGLGSMY--------CRGAAAVILTYDVSNVQSLEELED---RFLGLTDTANEDCLFAVVGNKLDL  112 (220)
T ss_pred             EEEEEEeCCCcccchhhHHHH--------hccCCEEEEEEECCCHHHHHHHHH---HHHHHHHhcCCCCcEEEEEECccc
Confidence            457899999976554444322        246889999999987543222100   01111111  12467899999999


Q ss_pred             CCCC-----------------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPE-----------------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~-----------------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+..                 .+....++.....++++....+.+.... .....++.+||++|+|++++..++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~-~~~~~~~E~SA~tg~~V~elf~~i~  186 (220)
T cd04126         113 TEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSP-AAEKMCFETSAKTGYNVDELFEYLF  186 (220)
T ss_pred             ccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccc-cccceEEEeeCCCCCCHHHHHHHHH
Confidence            7511                 1112344444444444321111111111 1112467899999999998876664

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04167 Snu114p Snu114p subfamily

Probab=99.21  E-value=2.2e-11  Score=103.76  Aligned_cols=94  Identities=18%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      ...+.++||||..+.....        ......+|++++|+|+..........     +.........+.++++||+|++
T Consensus        70 ~~~i~iiDtpG~~~f~~~~--------~~~~~~aD~~llVvD~~~~~~~~~~~-----~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          70 SYLFNIIDTPGHVNFMDEV--------AAALRLSDGVVLVVDVVEGVTSNTER-----LIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEEEEECCCCcchHHHH--------HHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECcccC
Confidence            3567899999987643222        22335789999999997654322110     1112223347899999999986


Q ss_pred             CCCC---CcchHHHHHHHHHhhcCCCEEEE
Q 022736          200 SPER---SGDSLDELEKEIHEINSLAHVIR  226 (293)
Q Consensus       200 ~~~~---~~~~~~~~~~~l~~lnp~a~i~~  226 (293)
                      ..+.   ....+..+.+.++.+|+.+..+.
T Consensus       137 ~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~  166 (213)
T cd04167         137 ILELKLPPNDAYFKLRHIIDEVNNIIASFS  166 (213)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2110   01245778888888888776554

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.21  E-value=1.1e-10  Score=95.96  Aligned_cols=109  Identities=13%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV  199 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~~  199 (293)
                      .+.|+||||......+...        ....++.+++|+|..+.........   .+...+.+.  ..+.+++.||+|+.
T Consensus        49 ~~~i~Dt~G~~~~~~~~~~--------~~~~a~~~i~v~d~~~~~sf~~~~~---~~~~~~~~~~~~~piilv~nK~Dl~  117 (173)
T cd04130          49 RLQLCDTAGQDEFDKLRPL--------CYPDTDVFLLCFSVVNPSSFQNISE---KWIPEIRKHNPKAPIILVGTQADLR  117 (173)
T ss_pred             EEEEEECCCChhhcccccc--------ccCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeeChhhc
Confidence            4679999997543222211        2246788999999886543221100   011122221  35779999999987


Q ss_pred             CCCC----------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          200 SPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       200 ~~~~----------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +...          +....+......+..              ....++.+||++|.|++++.+.+
T Consensus       118 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~--------------~~~~~~e~Sa~~~~~v~~lf~~~  169 (173)
T cd04130         118 TDVNVLIQLARYGEKPVSQSRAKALAEKI--------------GACEYIECSALTQKNLKEVFDTA  169 (173)
T ss_pred             cChhHHHHHhhcCCCCcCHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHH
Confidence            5320          001112222222222              12367899999999999887654

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04121 Rab40 Rab40 subfamily

Probab=99.20  E-value=1.2e-10  Score=97.47  Aligned_cols=105  Identities=13%  Similarity=0.083  Sum_probs=66.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      ..+-|+||+|......+...+.        ..+|++++|+|.++.......       ..++.++     ..+.++|.||
T Consensus        55 ~~l~iwDt~G~~~~~~l~~~~~--------~~ad~illVfD~t~~~Sf~~~-------~~w~~~i~~~~~~~piilVGNK  119 (189)
T cd04121          55 VKLQLWDTSGQGRFCTIFRSYS--------RGAQGIILVYDITNRWSFDGI-------DRWIKEIDEHAPGVPKILVGNR  119 (189)
T ss_pred             EEEEEEeCCCcHHHHHHHHHHh--------cCCCEEEEEEECcCHHHHHHH-------HHHHHHHHHhCCCCCEEEEEEC
Confidence            4567999999865444433221        478899999999875543221       1222222     3467899999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+......  ..++.+...+..+               ..++.+||++|.|++++..++..
T Consensus       120 ~DL~~~~~v--~~~~~~~~a~~~~---------------~~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121         120 LHLAFKRQV--ATEQAQAYAERNG---------------MTFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             ccchhccCC--CHHHHHHHHHHcC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence            998654321  2344444444322               24678999999999998888764

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.19  E-value=2e-10  Score=94.73  Aligned_cols=108  Identities=14%  Similarity=0.132  Sum_probs=61.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      .++.|+||+|......+...        .....+++|+|+|..+.........   .+...+.+.  ..|.++|.||+|+
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~sf~~~~~---~~~~~~~~~~~~~piilvgnK~Dl  117 (174)
T cd01871          49 VNLGLWDTAGQEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL  117 (174)
T ss_pred             EEEEEEECCCchhhhhhhhh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEeeChhh
Confidence            45779999996543332221        1246789999999987543322100   011111111  3578999999998


Q ss_pred             CCCCCCcchHHHH-------------HHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPERSGDSLDEL-------------EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~~~~~~~~~~-------------~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+...   ..+++             .+..+.++              ...++.+||++|+|++++...+.
T Consensus       118 ~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~i~~~f~~l~  171 (174)
T cd01871         118 RDDKD---TIEKLKEKKLTPITYPQGLAMAKEIG--------------AVKYLECSALTQKGLKTVFDEAI  171 (174)
T ss_pred             ccChh---hHHHHhhccCCCCCHHHHHHHHHHcC--------------CcEEEEecccccCCHHHHHHHHH
Confidence            64321   11111             11111111              12567899999999998876654

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04111 Rab39 Rab39 subfamily

Probab=99.19  E-value=5.2e-11  Score=101.41  Aligned_cols=105  Identities=16%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl  193 (293)
                      ..+.++||+|......+...        .....+.+++|+|..+......       +..++.++       ..+.++|.
T Consensus        52 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~Sf~~-------l~~~~~~i~~~~~~~~~~iilvg  116 (211)
T cd04111          52 IKLQLWDTAGQERFRSITRS--------YYRNSVGVLLVFDITNRESFEH-------VHDWLEEARSHIQPHRPVFILVG  116 (211)
T ss_pred             EEEEEEeCCcchhHHHHHHH--------HhcCCcEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCCeEEEEE
Confidence            35779999996543332221        1245788999999987543221       11222221       12347788


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ||+|+.+..+.  ..+......+..+               ..++.+|+++|+|++++..++.+
T Consensus       117 NK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sak~g~~v~e~f~~l~~  163 (211)
T cd04111         117 HKCDLESQRQV--TREEAEKLAKDLG---------------MKYIETSARTGDNVEEAFELLTQ  163 (211)
T ss_pred             Ecccccccccc--CHHHHHHHHHHhC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            99998764321  2233333333221               23567899999999998888754

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.18  E-value=3.1e-10  Score=105.51  Aligned_cols=115  Identities=23%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL  198 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~  198 (293)
                      +.++.||||||..+   +.     .........+|.+++|+|+.........     ++.......+.+ .++++||+|+
T Consensus        74 ~~~i~~iDtPGh~~---f~-----~~~~~~~~~~d~~llVvd~~~g~~~~t~-----~~~~~~~~~g~~~~IvviNK~D~  140 (394)
T PRK12736         74 KRHYAHVDCPGHAD---YV-----KNMITGAAQMDGAILVVAATDGPMPQTR-----EHILLARQVGVPYLVVFLNKVDL  140 (394)
T ss_pred             CcEEEEEECCCHHH---HH-----HHHHHHHhhCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCEEEEEEEecCC
Confidence            45789999999532   22     2223445678999999999864332221     123344555667 4678999999


Q ss_pred             CCCCCCcc-hHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc--------hhhhhhhhhhh
Q 022736          199 VSPERSGD-SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT--------HVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~-~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~--------~~~~l~~~l~~  257 (293)
                      ++.++... ..+++...++.+.-.          ....+++++|+++|.        ++..|.+.+..
T Consensus       141 ~~~~~~~~~i~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~  198 (394)
T PRK12736        141 VDDEELLELVEMEVRELLSEYDFP----------GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDE  198 (394)
T ss_pred             cchHHHHHHHHHHHHHHHHHhCCC----------cCCccEEEeeccccccCCCcchhhHHHHHHHHHH
Confidence            85442101 112344444433211          012467889999983        34555555544

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.18  E-value=2.6e-10  Score=111.02  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      ...+.||||||..+......        .....+|.+++|+|+..........     ..........+.++|+||+|+.
T Consensus        73 ~~~lnLiDTPGh~dF~~~v~--------~sl~~aD~aILVVDas~gv~~qt~~-----~~~~~~~~~lpiIvViNKiDl~  139 (600)
T PRK05433         73 TYILNLIDTPGHVDFSYEVS--------RSLAACEGALLVVDASQGVEAQTLA-----NVYLALENDLEIIPVLNKIDLP  139 (600)
T ss_pred             cEEEEEEECCCcHHHHHHHH--------HHHHHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEEEECCCCC
Confidence            35678999999877543322        1234678999999998653322110     1111223356789999999986


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEE
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSI  276 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  276 (293)
                      +..     ...+.+.++....           ++..+++.+||++|.|+++|.+++.+....|. ...+.+++.+++
T Consensus       140 ~a~-----~~~v~~ei~~~lg-----------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~-~~~~~pl~~~Vf  199 (600)
T PRK05433        140 AAD-----PERVKQEIEDVIG-----------IDASDAVLVSAKTGIGIEEVLEAIVERIPPPK-GDPDAPLKALIF  199 (600)
T ss_pred             ccc-----HHHHHHHHHHHhC-----------CCcceEEEEecCCCCCHHHHHHHHHHhCcccc-CCCCCCceEEEE
Confidence            532     2333333333211           11235789999999999999999865433232 123344554444

>cd04128 Spg1 Spg1p

Probab=99.18  E-value=1.7e-10  Score=95.96  Aligned_cols=113  Identities=10%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      .++.|+||+|......+...        ....++++++|+|.++........    .+...+.+.   ..+ ++|.||+|
T Consensus        49 ~~l~iwDt~G~~~~~~~~~~--------~~~~a~~iilv~D~t~~~s~~~i~----~~~~~~~~~~~~~~p-ilVgnK~D  115 (182)
T cd04128          49 ITFSIWDLGGQREFINMLPL--------VCNDAVAILFMFDLTRKSTLNSIK----EWYRQARGFNKTAIP-ILVGTKYD  115 (182)
T ss_pred             EEEEEEeCCCchhHHHhhHH--------HCcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCE-EEEEEchh
Confidence            45779999997543333221        224678899999998765432210    011222221   124 78899999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +...... .....+.+..+.+...          .. ..++.+||++|.|++++..++...
T Consensus       116 l~~~~~~-~~~~~~~~~~~~~a~~----------~~-~~~~e~SAk~g~~v~~lf~~l~~~  164 (182)
T cd04128         116 LFADLPP-EEQEEITKQARKYAKA----------MK-APLIFCSTSHSINVQKIFKIVLAK  164 (182)
T ss_pred             ccccccc-hhhhhhHHHHHHHHHH----------cC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence            8642110 0001111222221110          01 246789999999999998887643

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.17  E-value=5.2e-10  Score=96.89  Aligned_cols=71  Identities=18%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      .+.++.++||||..+.....        ......+|.+++|+|+.........     .+.........|.++++||+|+
T Consensus        62 ~~~~i~liDTPG~~~f~~~~--------~~~l~~aD~~IlVvd~~~g~~~~~~-----~~~~~~~~~~~P~iivvNK~D~  128 (237)
T cd04168          62 EDTKVNLIDTPGHMDFIAEV--------ERSLSVLDGAILVISAVEGVQAQTR-----ILWRLLRKLNIPTIIFVNKIDR  128 (237)
T ss_pred             CCEEEEEEeCCCccchHHHH--------HHHHHHhCeEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCEEEEEECccc
Confidence            45678999999987643322        1233567899999999865432211     1223334456788999999998


Q ss_pred             CCCC
Q 022736          199 VSPE  202 (293)
Q Consensus       199 ~~~~  202 (293)
                      .+..
T Consensus       129 ~~a~  132 (237)
T cd04168         129 AGAD  132 (237)
T ss_pred             cCCC
Confidence            8643

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>CHL00071 tufA elongation factor Tu

Probab=99.17  E-value=3e-10  Score=106.09  Aligned_cols=71  Identities=27%  Similarity=0.245  Sum_probs=45.9

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D  197 (293)
                      ++.++.|+||||..   .+.     .........+|.+++|+|+..........     ..........+ .++++||+|
T Consensus        73 ~~~~~~~iDtPGh~---~~~-----~~~~~~~~~~D~~ilVvda~~g~~~qt~~-----~~~~~~~~g~~~iIvvvNK~D  139 (409)
T CHL00071         73 ENRHYAHVDCPGHA---DYV-----KNMITGAAQMDGAILVVSAADGPMPQTKE-----HILLAKQVGVPNIVVFLNKED  139 (409)
T ss_pred             CCeEEEEEECCChH---HHH-----HHHHHHHHhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEEccC
Confidence            34578999999953   222     22234456789999999998654332211     23344555667 557899999


Q ss_pred             CCCCC
Q 022736          198 LVSPE  202 (293)
Q Consensus       198 ~~~~~  202 (293)
                      +++.+
T Consensus       140 ~~~~~  144 (409)
T CHL00071        140 QVDDE  144 (409)
T ss_pred             CCCHH
Confidence            98654

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.16  E-value=2.5e-10  Score=93.75  Aligned_cols=118  Identities=14%  Similarity=0.140  Sum_probs=61.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~  198 (293)
                      ..+.++||+|..+...+..        ......|.++++.|..+.........   .+...+.+  -..|.++|.||+|+
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~~~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl  117 (175)
T cd01870          49 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL  117 (175)
T ss_pred             EEEEEEeCCCchhhhhccc--------cccCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeeChhc
Confidence            4578999999754322211        12246788888888875432111000   01112222  14578999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEe----ecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRS----VRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~----~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+....   ...    +...+.. .+...    .........++.+||++|.|++++..++.+
T Consensus       118 ~~~~~~---~~~----i~~~~~~-~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~  172 (175)
T cd01870         118 RNDEHT---RRE----LAKMKQE-PVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATR  172 (175)
T ss_pred             ccChhh---hhh----hhhccCC-CccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHH
Confidence            754311   111    1111100 00000    000011235788999999999999888754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04117 Rab15 Rab15 subfamily

Probab=99.16  E-value=5.3e-10  Score=90.87  Aligned_cols=107  Identities=13%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||+|..........        ....+|++++|+|..+....... .   .+...+.+.   ..+.++|.||.|
T Consensus        49 ~~l~i~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~sf~~~-~---~~~~~~~~~~~~~~~iilvgnK~D  116 (161)
T cd04117          49 VRIQIWDTAGQERYQTITKQ--------YYRRAQGIFLVYDISSERSYQHI-M---KWVSDVDEYAPEGVQKILIGNKAD  116 (161)
T ss_pred             EEEEEEeCCCcHhHHhhHHH--------HhcCCcEEEEEEECCCHHHHHHH-H---HHHHHHHHhCCCCCeEEEEEECcc
Confidence            34679999996544333322        12467889999998765432211 0   011222222   246789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +....+.  ...+.....+..+               ..++.+||+++.|++++..|+.
T Consensus       117 l~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117         117 EEQKRQV--GDEQGNKLAKEYG---------------MDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             cccccCC--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHH
Confidence            8764422  1122222222221               2357899999999999888774

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.16  E-value=2.8e-10  Score=96.27  Aligned_cols=74  Identities=15%  Similarity=0.172  Sum_probs=43.0

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccc-cccEEEEEcccchHHHHhhhcccCCchHHHH--H---HhccCEEEE
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITVVDAKNLLFQIDKYRHLSSYPEAIH--Q---IAFADVVIL  193 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~-~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~--q---i~~a~iivl  193 (293)
                      +..+.|+||||..........     .+   .. ++++|+|+|+.............  +...+.  +   -..|.+++.
T Consensus        47 ~~~~~l~D~pG~~~~~~~~~~-----~~---~~~~~~vV~VvD~~~~~~~~~~~~~~--l~~il~~~~~~~~~~pvliv~  116 (203)
T cd04105          47 GKKFRLVDVPGHPKLRDKLLE-----TL---KNSAKGIVFVVDSATFQKNLKDVAEF--LYDILTDLEKVKNKIPVLIAC  116 (203)
T ss_pred             CceEEEEECCCCHHHHHHHHH-----HH---hccCCEEEEEEECccchhHHHHHHHH--HHHHHHHHhhccCCCCEEEEe
Confidence            345889999997654333221     11   22 48999999998763222211000  111111  1   146789999


Q ss_pred             eCCCCCCCCC
Q 022736          194 NKVDLVSPER  203 (293)
Q Consensus       194 NK~D~~~~~~  203 (293)
                      ||+|+..+..
T Consensus       117 NK~Dl~~a~~  126 (203)
T cd04105         117 NKQDLFTAKP  126 (203)
T ss_pred             cchhhcccCC
Confidence            9999987553

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.15  E-value=8.8e-11  Score=92.43  Aligned_cols=112  Identities=18%  Similarity=0.039  Sum_probs=65.8

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +.++.++|+||.........        ......+.+++|+|+.........................+.++++||+|+.
T Consensus        44 ~~~~~l~D~~g~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~  115 (157)
T cd00882          44 KVKLQIWDTAGQERFRSLRR--------LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP  115 (157)
T ss_pred             EEEEEEEecCChHHHHhHHH--------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence            45688999999765433321        1225678899999998765433221000001112233356789999999998


Q ss_pred             CCCCCcchHHHHH-HHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          200 SPERSGDSLDELE-KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       200 ~~~~~~~~~~~~~-~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .....    .... .......             ....++.+|+.++.++.++..|+.
T Consensus       116 ~~~~~----~~~~~~~~~~~~-------------~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         116 EERVV----SEEELAEQLAKE-------------LGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             cccch----HHHHHHHHHHhh-------------cCCcEEEEecCCCCChHHHHHHHh
Confidence            65431    1111 1111111             124578899999999998888864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.15  E-value=9.9e-11  Score=95.94  Aligned_cols=106  Identities=18%  Similarity=0.149  Sum_probs=58.1

Q ss_pred             CCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeC
Q 022736          121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK  195 (293)
                      ..+.|+||+|..... .+...        ....+|++++|+|..+........    .+...+.+    -..|.++|.||
T Consensus        51 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~iiv~nK  118 (170)
T cd04115          51 IKVQLWDTAGQERFRKSMVQH--------YYRNVHAVVFVYDVTNMASFHSLP----SWIEECEQHSLPNEVPRILVGNK  118 (170)
T ss_pred             EEEEEEeCCChHHHHHhhHHH--------hhcCCCEEEEEEECCCHHHHHhHH----HHHHHHHHhcCCCCCCEEEEEEC
Confidence            457899999964322 11111        124678899999998654332210    01111111    13578999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCC---cchhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD---ATHVTRLEGLL  255 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~---~~~~~~l~~~l  255 (293)
                      +|+....+.  .........+..+               -.++.+||++   +.+++++...+
T Consensus       119 ~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~~~~i~~~f~~l  164 (170)
T cd04115         119 CDLREQIQV--PTDLAQRFADAHS---------------MPLFETSAKDPSENDHVEAIFMTL  164 (170)
T ss_pred             ccchhhcCC--CHHHHHHHHHHcC---------------CcEEEEeccCCcCCCCHHHHHHHH
Confidence            998754421  1122222222211               2357789998   66666665544

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.15  E-value=3.9e-10  Score=93.11  Aligned_cols=115  Identities=10%  Similarity=0.081  Sum_probs=60.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||+|......+...        .....+++|+|+|..+.........   .+...+.+.  ..|.++|.||+|+
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~a~~~ilv~d~~~~~s~~~~~~---~w~~~i~~~~~~~piilvgnK~Dl  117 (175)
T cd01874          49 YTLGLFDTAGQEDYDRLRPL--------SYPQTDVFLVCFSVVSPSSFENVKE---KWVPEITHHCPKTPFLLVGTQIDL  117 (175)
T ss_pred             EEEEEEECCCccchhhhhhh--------hcccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEECHhh
Confidence            45779999997654332221        1246788999999876543221100   011112111  3578999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEee-----cCCCCchhhcccccCCcchhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSV-----RCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~-----~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      .+..+       +.+.+.....  +.+...     ........++.+||++|+|++++...+
T Consensus       118 ~~~~~-------~~~~l~~~~~--~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~  170 (175)
T cd01874         118 RDDPS-------TIEKLAKNKQ--KPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA  170 (175)
T ss_pred             hhChh-------hHHHhhhccC--CCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence            65421       1111111100  000000     000112357889999999998876554

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=99.14  E-value=1.1e-11  Score=103.81  Aligned_cols=161  Identities=17%  Similarity=0.152  Sum_probs=91.1

Q ss_pred             EEEEecCCCcHHHHHHHHHc--cCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhh-----hhhccCcceeec-----
Q 022736           35 TVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEE-----WVELANGCICCT-----  102 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~--~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~-----~~~l~~gcicc~-----  102 (293)
                      -+|+|+|||||||..+.+.+  ...|+++++|+-||+. -+......-+-..-+.+++     -.--++|-+||-     
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN-d~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~   83 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN-DNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEA   83 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc-cCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHh
Confidence            36799999999999998866  2458999999999987 2222110000000001111     111245566662     


Q ss_pred             cchhHHHHHHHHHhhcCCCCEEEEecCCCCCc---HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736          103 VKHSLVQALEQLVQRKERLDHILLETTGLANP---APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP  179 (293)
Q Consensus       103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~---~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~  179 (293)
                      .-+++.+.++.     ..-.|+++|+||..+.   ....+.++ ....+...++ +++-++|+.-+.++....+.+....
T Consensus        84 ~idwl~~~l~~-----~~~~Y~lFDcPGQVELft~h~~l~~I~-~~Lek~~~rl-~~V~LiDs~ycs~p~~~iS~lL~sl  156 (290)
T KOG1533|consen   84 NIDWLLEKLKP-----LTDHYVLFDCPGQVELFTHHDSLNKIF-RKLEKLDYRL-VAVNLIDSHYCSDPSKFISSLLVSL  156 (290)
T ss_pred             hhHHHHHHhhh-----ccCcEEEEeCCCcEEEEeccchHHHHH-HHHHHcCceE-EEEEeeeceeeCChHHHHHHHHHHH
Confidence            12455555554     2356999999996542   11112121 1112223344 4677788865555444333222223


Q ss_pred             HHHHHHhccCEEEEeCCCCCCCCC
Q 022736          180 EAIHQIAFADVVILNKVDLVSPER  203 (293)
Q Consensus       180 ~~~~qi~~a~iivlNK~D~~~~~~  203 (293)
                      ..+-+++.|.+-|++|+|+....+
T Consensus       157 ~tMl~melphVNvlSK~Dl~~~yg  180 (290)
T KOG1533|consen  157 ATMLHMELPHVNVLSKADLLKKYG  180 (290)
T ss_pred             HHHHhhcccchhhhhHhHHHHhhc
Confidence            345677899999999999886543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.14  E-value=5.4e-11  Score=101.88  Aligned_cols=117  Identities=18%  Similarity=0.214  Sum_probs=60.7

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH--HhhhcccCCchHHHHHHh-ccCEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIA-FADVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~qi~-~a~iivlNK  195 (293)
                      .+..+.++||||..+.   .     .........+|.+++|+|+......  .................. .+.++++||
T Consensus        75 ~~~~i~liDtpG~~~~---~-----~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK  146 (219)
T cd01883          75 EKYRFTILDAPGHRDF---V-----PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNK  146 (219)
T ss_pred             CCeEEEEEECCChHHH---H-----HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEc
Confidence            4567899999996432   1     1122334568999999999863110  000000000112223333 356779999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT  249 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~  249 (293)
                      +|+............+.+.++.+......      ......++++||++|+|++
T Consensus       147 ~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~------~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         147 MDDVTVNWSEERYDEIKKELSPFLKKVGY------NPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHcCC------CcCCceEEEeecCcCCCCC
Confidence            99984310001234444444322111000      0012458899999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PLN03110 Rab GTPase; Provisional

Probab=99.14  E-value=5.9e-10  Score=95.23  Aligned_cols=108  Identities=14%  Similarity=0.072  Sum_probs=62.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      .++.|+||+|......+...+        ....+++++|+|......... ..   .+...+.+.   ..+.++|.||+|
T Consensus        61 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~-~~---~~~~~~~~~~~~~~piiiv~nK~D  128 (216)
T PLN03110         61 VKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDITKRQTFDN-VQ---RWLRELRDHADSNIVIMMAGNKSD  128 (216)
T ss_pred             EEEEEEECCCcHHHHHHHHHH--------hCCCCEEEEEEECCChHHHHH-HH---HHHHHHHHhCCCCCeEEEEEEChh
Confidence            357799999965443333221        135788999999875433211 10   012222222   356799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +......  ..+.. ..+...+ .             ..++.+||++|.|++++..++..
T Consensus       129 l~~~~~~--~~~~~-~~l~~~~-~-------------~~~~e~SA~~g~~v~~lf~~l~~  171 (216)
T PLN03110        129 LNHLRSV--AEEDG-QALAEKE-G-------------LSFLETSALEATNVEKAFQTILL  171 (216)
T ss_pred             cccccCC--CHHHH-HHHHHHc-C-------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            8654321  11222 2222211 1             24678999999999988877743

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.13  E-value=3.6e-10  Score=91.98  Aligned_cols=106  Identities=18%  Similarity=0.137  Sum_probs=60.9

Q ss_pred             CEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-----HhccCEEEEeC
Q 022736          122 DHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-----IAFADVVILNK  195 (293)
Q Consensus       122 d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-----i~~a~iivlNK  195 (293)
                      .+-|+||||.... .....        .....+|++++++|..+...... ...   +...+.+     ...|.++|.||
T Consensus        48 ~~~i~D~~g~~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~~piilv~nK  115 (165)
T cd04146          48 SLEILDTAGQQQADTEQLE--------RSIRWADGFVLVYSITDRSSFDE-ISQ---LKQLIREIKKRDREIPVILVGNK  115 (165)
T ss_pred             EEEEEECCCCcccccchHH--------HHHHhCCEEEEEEECCCHHHHHH-HHH---HHHHHHHHhcCCCCCCEEEEEEC
Confidence            4679999997631 11111        11245788999999987643221 100   1222222     24678999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc-chhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA-THVTRLEGLLE  256 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~-~~~~~l~~~l~  256 (293)
                      +|+.+....  ..+...+..+..+               ..++.+|++++ .|++++..++.
T Consensus       116 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~~v~~~f~~l~  160 (165)
T cd04146         116 ADLLHYRQV--STEEGEKLASELG---------------CLFFEVSAAEDYDGVHSVFHELC  160 (165)
T ss_pred             CchHHhCcc--CHHHHHHHHHHcC---------------CEEEEeCCCCCchhHHHHHHHHH
Confidence            998654321  2223333333221               23578999999 58988877664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04134 Rho3 Rho3 subfamily

Probab=99.13  E-value=3.1e-10  Score=94.79  Aligned_cols=114  Identities=18%  Similarity=0.112  Sum_probs=62.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||+|......+...        ....++.+++|.|..+.........   .+...+.+.  ..|.++|.||+|+
T Consensus        48 ~~l~i~Dt~G~~~~~~l~~~--------~~~~a~~~ilv~dv~~~~sf~~~~~---~~~~~i~~~~~~~piilvgNK~Dl  116 (189)
T cd04134          48 IELSLWDTAGQEEFDRLRSL--------SYADTDVIMLCFSVDSPDSLENVES---KWLGEIREHCPGVKLVLVALKCDL  116 (189)
T ss_pred             EEEEEEECCCChhccccccc--------cccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence            45789999997543222111        1245778888888776543321100   011112111  3578999999999


Q ss_pred             CCCCCCcc----------hHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          199 VSPERSGD----------SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       199 ~~~~~~~~----------~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      .+..+...          ..++..+..+..              ....++.+||++|.|++++..|+....
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~e~SAk~~~~v~e~f~~l~~~~  173 (189)
T cd04134         117 REARNERDDLQRYGKHTISYEEGLAVAKRI--------------NALRYLECSAKLNRGVNEAFTEAARVA  173 (189)
T ss_pred             ccChhhHHHHhhccCCCCCHHHHHHHHHHc--------------CCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence            76432100          001111111111              112467899999999999998886543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.13  E-value=2.4e-10  Score=94.07  Aligned_cols=121  Identities=18%  Similarity=0.175  Sum_probs=62.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +-|.++|+|+.|||||+|+..|.....-..  +.+-++..    .. .+                               
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T--~tS~e~n~----~~-~~-------------------------------   43 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPT--VTSMENNI----AY-NV-------------------------------   43 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B-----SSEEE----EC-CG-------------------------------
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCe--eccccCCc----eE-Ee-------------------------------
Confidence            468899999999999999999996421111  11111110    00 00                               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-----H
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-----Q  184 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-----q  184 (293)
                           ....+..+-+||+||........ +.+      .....+.+||||||+.............  ....+.     .
T Consensus        44 -----~~~~~~~~~lvD~PGH~rlr~~~~~~~------~~~~~~k~IIfvvDSs~~~~~~~~~Ae~--Ly~iL~~~~~~~  110 (181)
T PF09439_consen   44 -----NNSKGKKLRLVDIPGHPRLRSKLLDEL------KYLSNAKGIIFVVDSSTDQKELRDVAEY--LYDILSDTEVQK  110 (181)
T ss_dssp             -----SSTCGTCECEEEETT-HCCCHHHHHHH------HHHGGEEEEEEEEETTTHHHHHHHHHHH--HHHHHHHHHCCT
T ss_pred             -----ecCCCCEEEEEECCCcHHHHHHHHHhh------hchhhCCEEEEEEeCccchhhHHHHHHH--HHHHHHhhhhcc
Confidence                 00133467899999966543322 211      1234577899999998765444332111  111111     2


Q ss_pred             HhccCEEEEeCCCCCCCC
Q 022736          185 IAFADVVILNKVDLVSPE  202 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~  202 (293)
                      -..+.+|+.||.|+..+.
T Consensus       111 ~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen  111 NKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             T--EEEEEEE-TTSTT--
T ss_pred             CCCCEEEEEeCccccccC
Confidence            245788999999998765

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04135 Tc10 TC10 subfamily

Probab=99.13  E-value=2.2e-10  Score=93.99  Aligned_cols=109  Identities=13%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDLV  199 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~~  199 (293)
                      .+.++||||..........        .....+.+++|+|..+.........   .+...+.+  -..+.++|.||+|+.
T Consensus        49 ~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~ilv~~~~~~~s~~~~~~---~~~~~l~~~~~~~piivv~nK~Dl~  117 (174)
T cd04135          49 LLGLYDTAGQEDYDRLRPL--------SYPMTDVFLICFSVVNPASFQNVKE---EWVPELKEYAPNVPYLLVGTQIDLR  117 (174)
T ss_pred             EEEEEeCCCcccccccccc--------cCCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeEchhhh
Confidence            4568999996543222211        1245678899999876543211100   01122222  245679999999986


Q ss_pred             CCCCCc----------chHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          200 SPERSG----------DSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       200 ~~~~~~----------~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +.....          ...+......+.+              ....++.+||++|.|++++.+.+
T Consensus       118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~gi~~~f~~~  169 (174)
T cd04135         118 DDPKTLARLNDMKEKPVTVEQGQKLAKEI--------------GAHCYVECSALTQKGLKTVFDEA  169 (174)
T ss_pred             cChhhHHHHhhccCCCCCHHHHHHHHHHc--------------CCCEEEEecCCcCCCHHHHHHHH
Confidence            543100          0011111122211              22357889999999999887654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03108 Rab family protein; Provisional

Probab=99.12  E-value=4.3e-10  Score=95.67  Aligned_cols=106  Identities=18%  Similarity=0.042  Sum_probs=61.6

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL  198 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D~  198 (293)
                      .+-++||+|......+...        ....+|.+++|+|..+....... .   .+...+.+.   ..+.+++.||+|+
T Consensus        56 ~l~l~Dt~G~~~~~~~~~~--------~~~~ad~~vlv~D~~~~~s~~~l-~---~~~~~~~~~~~~~~piiiv~nK~Dl  123 (210)
T PLN03108         56 KLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRETFNHL-A---SWLEDARQHANANMTIMLIGNKCDL  123 (210)
T ss_pred             EEEEEeCCCcHHHHHHHHH--------HhccCCEEEEEEECCcHHHHHHH-H---HHHHHHHHhcCCCCcEEEEEECccC
Confidence            3568999996433222211        11357889999999865432211 0   011111111   3567999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+...  ...+...+..+..+               ..++.+|++++.|++++..|+.
T Consensus       124 ~~~~~--~~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108        124 AHRRA--VSTEEGEQFAKEHG---------------LIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             ccccC--CCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHH
Confidence            75432  13344444443321               1367899999999998776664

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.12  E-value=2.7e-10  Score=98.45  Aligned_cols=90  Identities=20%  Similarity=0.180  Sum_probs=51.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      -++++|++|+|||||+|+|...    +.. +.+.++++.......+.                                 
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~----~~~-v~~~~~tT~~~~~g~~~---------------------------------   43 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNT----KSE-VAAYEFTTLTCVPGVLE---------------------------------   43 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC----Ccc-ccCCCCccccceEEEEE---------------------------------
Confidence            3678999999999999999943    222 22333321111110000                                 


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL  166 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~  166 (293)
                          ..+.++.++||||+.+.......+ ....+.....+|.+++|+|+.+..
T Consensus        44 ----~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~~~~ad~il~V~D~t~~~   91 (233)
T cd01896          44 ----YKGAKIQLLDLPGIIEGAADGKGR-GRQVIAVARTADLILMVLDATKPE   91 (233)
T ss_pred             ----ECCeEEEEEECCCcccccccchhH-HHHHHHhhccCCEEEEEecCCcch
Confidence                123457799999976533211111 011233446789999999987644

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK14974 cell division protein FtsY; Provisional

Probab=99.11  E-value=2.1e-09  Score=97.21  Aligned_cols=149  Identities=22%  Similarity=0.216  Sum_probs=82.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchh
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      .+..+++++|++|+||||++.+|...  ..+.+++++..|... .+.-..+-.. ...++.          ++......+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R-~~a~eqL~~~a~~lgv~----------v~~~~~g~d  206 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR-AGAIEQLEEHAERLGVK----------VIKHKYGAD  206 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc-HHHHHHHHHHHHHcCCc----------eecccCCCC
Confidence            34678999999999999999988763  457789998877432 1111111000 000110          000011111


Q ss_pred             ----HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736          107 ----LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA  181 (293)
Q Consensus       107 ----l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~  181 (293)
                          +..++...  ...+.|+|||||+|... ...++..+.  . +......+.+++|+|+....+....       ...
T Consensus       207 p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~--~-i~~~~~pd~~iLVl~a~~g~d~~~~-------a~~  274 (336)
T PRK14974        207 PAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELK--K-IVRVTKPDLVIFVGDALAGNDAVEQ-------ARE  274 (336)
T ss_pred             HHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHH--H-HHHhhCCceEEEeeccccchhHHHH-------HHH
Confidence                12223322  13568999999999654 445544321  1 1122346778999999765332221       122


Q ss_pred             HHHHhccCEEEEeCCCCCCC
Q 022736          182 IHQIAFADVVILNKVDLVSP  201 (293)
Q Consensus       182 ~~qi~~a~iivlNK~D~~~~  201 (293)
                      +.+.-..+-+|+||.|....
T Consensus       275 f~~~~~~~giIlTKlD~~~~  294 (336)
T PRK14974        275 FNEAVGIDGVILTKVDADAK  294 (336)
T ss_pred             HHhcCCCCEEEEeeecCCCC
Confidence            23334579999999998643

>PRK12735 elongation factor Tu; Reviewed

Probab=99.11  E-value=1.2e-09  Score=101.78  Aligned_cols=106  Identities=19%  Similarity=0.195  Sum_probs=58.1

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE-EEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i-ivlNK~D  197 (293)
                      ++.++.|+||||..   .+.     .........+|.+++|+|+.........     ++...+...+.+.+ +++||+|
T Consensus        73 ~~~~i~~iDtPGh~---~f~-----~~~~~~~~~aD~~llVvda~~g~~~qt~-----e~l~~~~~~gi~~iivvvNK~D  139 (396)
T PRK12735         73 ANRHYAHVDCPGHA---DYV-----KNMITGAAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCD  139 (396)
T ss_pred             CCcEEEEEECCCHH---HHH-----HHHHhhhccCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEecC
Confidence            34578999999963   222     2223445678999999999764322211     12333344455666 4799999


Q ss_pred             CCCCCCCcch-HHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch
Q 022736          198 LVSPERSGDS-LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH  247 (293)
Q Consensus       198 ~~~~~~~~~~-~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~  247 (293)
                      +.+.++.... ..++.+.++.+.-..          ....++++|+++|.+
T Consensus       140 l~~~~~~~~~~~~ei~~~l~~~~~~~----------~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        140 MVDDEELLELVEMEVRELLSKYDFPG----------DDTPIIRGSALKALE  180 (396)
T ss_pred             CcchHHHHHHHHHHHHHHHHHcCCCc----------CceeEEecchhcccc
Confidence            9854321001 113334444332100          013467888888743

>PRK10218 GTP-binding protein; Provisional

Probab=99.11  E-value=7.7e-10  Score=107.38  Aligned_cols=107  Identities=17%  Similarity=0.198  Sum_probs=63.9

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      .+..+.|+||||..+.......        ....+|.+++|+|+..........     ......+...+.++++||+|+
T Consensus        66 ~~~~inliDTPG~~df~~~v~~--------~l~~aDg~ILVVDa~~G~~~qt~~-----~l~~a~~~gip~IVviNKiD~  132 (607)
T PRK10218         66 NDYRINIVDTPGHADFGGEVER--------VMSMVDSVLLVVDAFDGPMPQTRF-----VTKKAFAYGLKPIVVINKVDR  132 (607)
T ss_pred             CCEEEEEEECCCcchhHHHHHH--------HHHhCCEEEEEEecccCccHHHHH-----HHHHHHHcCCCEEEEEECcCC
Confidence            4567899999998776543322        235689999999998653322211     122334456788999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH  247 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~  247 (293)
                      .++.- ...++++...+..+...       ....+ .+++.+|+++|.+
T Consensus       133 ~~a~~-~~vl~ei~~l~~~l~~~-------~~~~~-~PVi~~SA~~G~~  172 (607)
T PRK10218        133 PGARP-DWVVDQVFDLFVNLDAT-------DEQLD-FPIVYASALNGIA  172 (607)
T ss_pred             CCCch-hHHHHHHHHHHhccCcc-------ccccC-CCEEEeEhhcCcc
Confidence            75431 12334444444332211       11112 3478899999873

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.10  E-value=1.1e-09  Score=101.49  Aligned_cols=149  Identities=19%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      .+..++.++|++||||||++.+|...  ..|.+++++..|+.....++.........++.          +.......+.
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp----------~~~~~~~~dp  167 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIP----------FYGSYTESDP  167 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCe----------EEeecCCCCH
Confidence            34668999999999999999999753  45889999998874311111100000000100          0000111121


Q ss_pred             H----HHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736          108 V----QALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI  182 (293)
Q Consensus       108 ~----~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~  182 (293)
                      .    +.+..+.  ..++|+|||||+|-.... ...+.+.  . +......+.+++|+|+........       ....+
T Consensus       168 ~~i~~~~l~~~~--~~~~DvViIDTaGr~~~d~~lm~El~--~-i~~~~~p~e~lLVlda~~Gq~a~~-------~a~~F  235 (429)
T TIGR01425       168 VKIASEGVEKFK--KENFDIIIVDTSGRHKQEDSLFEEML--Q-VAEAIQPDNIIFVMDGSIGQAAEA-------QAKAF  235 (429)
T ss_pred             HHHHHHHHHHHH--hCCCCEEEEECCCCCcchHHHHHHHH--H-HhhhcCCcEEEEEeccccChhHHH-------HHHHH
Confidence            1    2333222  257899999999965543 3332221  1 123345677999999976543322       12344


Q ss_pred             HHHhccCEEEEeCCCCCC
Q 022736          183 HQIAFADVVILNKVDLVS  200 (293)
Q Consensus       183 ~qi~~a~iivlNK~D~~~  200 (293)
                      .+.-..+-+|+||.|...
T Consensus       236 ~~~~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       236 KDSVDVGSVIITKLDGHA  253 (429)
T ss_pred             HhccCCcEEEEECccCCC
Confidence            444457899999999754

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.08  E-value=5.8e-10  Score=104.99  Aligned_cols=71  Identities=27%  Similarity=0.295  Sum_probs=45.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D  197 (293)
                      .+.+++||||||..+.   .     .........+|.+++|+|+.......+.     +....+.....+. ++++||+|
T Consensus       122 ~~~~i~~iDtPGh~~f---~-----~~~~~g~~~aD~allVVda~~g~~~qt~-----e~l~~~~~~gip~iIvviNKiD  188 (447)
T PLN03127        122 AKRHYAHVDCPGHADY---V-----KNMITGAAQMDGGILVVSAPDGPMPQTK-----EHILLARQVGVPSLVVFLNKVD  188 (447)
T ss_pred             CCeEEEEEECCCccch---H-----HHHHHHHhhCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEeec
Confidence            3457899999998542   1     1122333568999999999765332221     1334455566675 67899999


Q ss_pred             CCCCC
Q 022736          198 LVSPE  202 (293)
Q Consensus       198 ~~~~~  202 (293)
                      +++.+
T Consensus       189 lv~~~  193 (447)
T PLN03127        189 VVDDE  193 (447)
T ss_pred             cCCHH
Confidence            98643

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.07  E-value=3.2e-10  Score=85.94  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             EEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCC
Q 022736          124 ILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE  202 (293)
Q Consensus       124 iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~  202 (293)
                      -.||||| +.+.....     ...+....++|.+++|-.+....+...        +....-...+.|-|++|+|+.++.
T Consensus        40 ~~IDTPGEy~~~~~~Y-----~aL~tt~~dadvi~~v~~and~~s~f~--------p~f~~~~~k~vIgvVTK~DLaed~  106 (148)
T COG4917          40 GDIDTPGEYFEHPRWY-----HALITTLQDADVIIYVHAANDPESRFP--------PGFLDIGVKKVIGVVTKADLAEDA  106 (148)
T ss_pred             cccCCchhhhhhhHHH-----HHHHHHhhccceeeeeecccCccccCC--------cccccccccceEEEEecccccchH
Confidence            4789999 33322222     222345567887887776654332211        112222345689999999999643


Q ss_pred             CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          203 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       203 ~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                          +++..+..|++..              ..+||.+|+.+..|+++|.++|..
T Consensus       107 ----dI~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         107 ----DISLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             ----hHHHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHHHh
Confidence                5788888888654              267899999999999999998864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.07  E-value=9.2e-11  Score=115.32  Aligned_cols=109  Identities=17%  Similarity=0.242  Sum_probs=62.0

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D  197 (293)
                      .+.+++||||||..+   +.     .........+|.+++|||+.........     +.......+.. +.++++||+|
T Consensus       102 ~~~~~~liDtPG~~~---f~-----~~~~~~~~~aD~~llVvda~~g~~~~t~-----e~~~~~~~~~~~~iivvvNK~D  168 (632)
T PRK05506        102 PKRKFIVADTPGHEQ---YT-----RNMVTGASTADLAIILVDARKGVLTQTR-----RHSFIASLLGIRHVVLAVNKMD  168 (632)
T ss_pred             CCceEEEEECCChHH---HH-----HHHHHHHHhCCEEEEEEECCCCccccCH-----HHHHHHHHhCCCeEEEEEEecc
Confidence            456789999999542   11     1122345678999999999765432111     02223344443 4677999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                      +++.++  ..++.+...++.+....        .+....++++|+++|.|+.+
T Consensus       169 ~~~~~~--~~~~~i~~~i~~~~~~~--------~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        169 LVDYDQ--EVFDEIVADYRAFAAKL--------GLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             cccchh--HHHHHHHHHHHHHHHHc--------CCCCccEEEEecccCCCccc
Confidence            985321  12333444443221110        01113578999999999864

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.07  E-value=2e-10  Score=108.98  Aligned_cols=111  Identities=16%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-ccCEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a~iivlNK~D  197 (293)
                      ++.+++||||||..+   +..     ........+|.+++|||+.........     ........++ .+.++++||+|
T Consensus       105 ~~~~i~~iDTPGh~~---f~~-----~~~~~l~~aD~allVVDa~~G~~~qt~-----~~~~l~~~lg~~~iIvvvNKiD  171 (474)
T PRK05124        105 EKRKFIIADTPGHEQ---YTR-----NMATGASTCDLAILLIDARKGVLDQTR-----RHSFIATLLGIKHLVVAVNKMD  171 (474)
T ss_pred             CCcEEEEEECCCcHH---HHH-----HHHHHHhhCCEEEEEEECCCCccccch-----HHHHHHHHhCCCceEEEEEeec
Confidence            356799999999432   221     122334778999999999765432111     0122333333 35678999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      +++..+  ..+..+.+.++.+.....       .....+++++|+++|+|+..+
T Consensus       172 ~~~~~~--~~~~~i~~~l~~~~~~~~-------~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        172 LVDYSE--EVFERIREDYLTFAEQLP-------GNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             cccchh--HHHHHHHHHHHHHHHhcC-------CCCCceEEEEEeecCCCcccc
Confidence            985332  234455555543221110       012256789999999998754

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.06  E-value=9.9e-10  Score=109.07  Aligned_cols=136  Identities=16%  Similarity=0.086  Sum_probs=75.2

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .++.-|+|+|.+|+|||||+++|+...... -.+-..+.|+ ...|...... ..++..    ......+          
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~~~~~~g~-~~~D~~~~e~-~rgiti----~~~~~~~----------   70 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRI-HKIGEVHDGA-ATMDWMEQEK-ERGITI----TSAATTV----------   70 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCCc-cccCCCHHHH-hcCCCE----ecceEEE----------
Confidence            357789999999999999999998532110 0011111121 1112111110 001100    0000000          


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                             ...+.++.|+||||..+.....        ......+|++++|+|+..........     ......+...+.
T Consensus        71 -------~~~~~~i~liDTPG~~~~~~~~--------~~~l~~~D~~ilVvda~~g~~~~~~~-----~~~~~~~~~~p~  130 (689)
T TIGR00484        71 -------FWKGHRINIIDTPGHVDFTVEV--------ERSLRVLDGAVAVLDAVGGVQPQSET-----VWRQANRYEVPR  130 (689)
T ss_pred             -------EECCeEEEEEECCCCcchhHHH--------HHHHHHhCEEEEEEeCCCCCChhHHH-----HHHHHHHcCCCE
Confidence                   1245678999999987643221        22335679999999998654332211     222344456789


Q ss_pred             EEEEeCCCCCCCC
Q 022736          190 VVILNKVDLVSPE  202 (293)
Q Consensus       190 iivlNK~D~~~~~  202 (293)
                      ++++||+|+.+..
T Consensus       131 ivviNK~D~~~~~  143 (689)
T TIGR00484       131 IAFVNKMDKTGAN  143 (689)
T ss_pred             EEEEECCCCCCCC
Confidence            9999999998653

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.06  E-value=3e-09  Score=98.95  Aligned_cols=70  Identities=23%  Similarity=0.288  Sum_probs=44.8

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE-EEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i-ivlNK~D  197 (293)
                      ++.+++||||||..   .+.     .........+|.+++|+|+.........     ++...+...+.+.+ +++||+|
T Consensus        73 ~~~~i~~iDtPG~~---~f~-----~~~~~~~~~aD~~llVVDa~~g~~~qt~-----~~~~~~~~~g~p~iiVvvNK~D  139 (396)
T PRK00049         73 EKRHYAHVDCPGHA---DYV-----KNMITGAAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCD  139 (396)
T ss_pred             CCeEEEEEECCCHH---HHH-----HHHHhhhccCCEEEEEEECCCCCchHHH-----HHHHHHHHcCCCEEEEEEeecC
Confidence            34578999999973   222     2223445678999999999865433221     12334444566766 5799999


Q ss_pred             CCCC
Q 022736          198 LVSP  201 (293)
Q Consensus       198 ~~~~  201 (293)
                      +.+.
T Consensus       140 ~~~~  143 (396)
T PRK00049        140 MVDD  143 (396)
T ss_pred             Ccch
Confidence            9864

>cd01875 RhoG RhoG subfamily

Probab=99.05  E-value=2.7e-09  Score=89.33  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=63.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~  198 (293)
                      ..+-|+||+|......+....        ...++++|+|.|.++.........   .+...+.+  -..|.++|.||.|+
T Consensus        51 ~~l~i~Dt~G~e~~~~l~~~~--------~~~a~~~ilvydit~~~Sf~~~~~---~w~~~i~~~~~~~piilvgNK~DL  119 (191)
T cd01875          51 VSLNLWDTAGQEEYDRLRTLS--------YPQTNVFIICFSIASPSSYENVRH---KWHPEVCHHCPNVPILLVGTKKDL  119 (191)
T ss_pred             EEEEEEECCCchhhhhhhhhh--------ccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEEeChhh
Confidence            457799999976544333221        146788999999876544221100   01111111  13578999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEe----ecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRS----VRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~----~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      .+...   ..+.    ++..... .+...    .........++.+||++|+|++++..++....
T Consensus       120 ~~~~~---~~~~----~~~~~~~-~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         120 RNDAD---TLKK----LKEQGQA-PITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             hcChh---hHHH----HhhccCC-CCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            65321   0111    1111000 00000    00001112468899999999999988876543

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.05  E-value=8.3e-09  Score=86.69  Aligned_cols=158  Identities=23%  Similarity=0.267  Sum_probs=86.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-eccchhHH-
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLV-  108 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~~l~-  108 (293)
                      .+++++|+.|+||||.+-+|...  ..++++++++.|..- .+.-..+-.          ..+..+-.++ +....+-. 
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R-~ga~eQL~~----------~a~~l~vp~~~~~~~~~~~~   70 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR-IGAVEQLKT----------YAEILGVPFYVARTESDPAE   70 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS-THHHHHHHH----------HHHHHTEEEEESSTTSCHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC-ccHHHHHHH----------HHHHhccccchhhcchhhHH
Confidence            47899999999999999999763  239999999988653 222211110          0111111111 11122222 


Q ss_pred             ---HHHHHHHhhcCCCCEEEEecCCCCCcHHH-HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          109 ---QALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       109 ---~~l~~l~~~~~~~d~iiidt~G~~~~~~~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                         +.++..  ...++|+|||||+|......- ...+  ...+ .....+.+++|+++......+..       ...+.+
T Consensus        71 ~~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el--~~~~-~~~~~~~~~LVlsa~~~~~~~~~-------~~~~~~  138 (196)
T PF00448_consen   71 IAREALEKF--RKKGYDLVLIDTAGRSPRDEELLEEL--KKLL-EALNPDEVHLVLSATMGQEDLEQ-------ALAFYE  138 (196)
T ss_dssp             HHHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHH--HHHH-HHHSSSEEEEEEEGGGGGHHHHH-------HHHHHH
T ss_pred             HHHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHH--HHHh-hhcCCccceEEEecccChHHHHH-------HHHHhh
Confidence               233332  235689999999997654322 2211  1111 22245678999999876654432       112222


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      .-..+-++++|.|-...      ...+.+.+....
T Consensus       139 ~~~~~~lIlTKlDet~~------~G~~l~~~~~~~  167 (196)
T PF00448_consen  139 AFGIDGLILTKLDETAR------LGALLSLAYESG  167 (196)
T ss_dssp             HSSTCEEEEESTTSSST------THHHHHHHHHHT
T ss_pred             cccCceEEEEeecCCCC------cccceeHHHHhC
Confidence            23468899999997643      245555555443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.05  E-value=8.9e-09  Score=92.76  Aligned_cols=152  Identities=17%  Similarity=0.237  Sum_probs=81.1

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchh-
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS-  106 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~-  106 (293)
                      .+..+++++|++|+||||++..|...  ..+.+|.++..|......++.........++          +.+......+ 
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i----------~~~~~~~~~dp  181 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV----------PVIAQKEGADP  181 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCc----------eEEEeCCCCCH
Confidence            34678999999999999999999763  4578999998886421111110000000000          1111111111 


Q ss_pred             ---HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhh-cchhhcc--ccccccEEEEEcccchHHHHhhhcccCCch
Q 022736          107 ---LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYP  179 (293)
Q Consensus       107 ---l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~-~~~~~~~--~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~  179 (293)
                         ..+.+...  ...++|+|||||||... ....++.+. .......  ....+.+++|+|+.........       .
T Consensus       182 a~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-------a  252 (318)
T PRK10416        182 ASVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-------A  252 (318)
T ss_pred             HHHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-------H
Confidence               11222211  23679999999999654 222222111 0000000  1234568999999865443321       1


Q ss_pred             HHHHHHhccCEEEEeCCCCCC
Q 022736          180 EAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       180 ~~~~qi~~a~iivlNK~D~~~  200 (293)
                      ..+.+.-..+-+|+||.|...
T Consensus       253 ~~f~~~~~~~giIlTKlD~t~  273 (318)
T PRK10416        253 KAFHEAVGLTGIILTKLDGTA  273 (318)
T ss_pred             HHHHhhCCCCEEEEECCCCCC
Confidence            122222346889999999553

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.05  E-value=3.5e-10  Score=98.98  Aligned_cols=157  Identities=21%  Similarity=0.254  Sum_probs=97.2

Q ss_pred             ccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC--CCCccccchhhhhcCCCCcchhhhhhccCcceeec
Q 022736           25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE--FGEEIGVERAMINEGEGGALVEEWVELANGCICCT  102 (293)
Q Consensus        25 ~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d--~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~  102 (293)
                      ........|||.++|+.|||||||+++|...      ++.-++  |.+ ...+....             .+        
T Consensus       171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~A------al~p~drLFAT-LDpT~h~a-------------~L--------  222 (410)
T KOG0410|consen  171 VGREGESSPVIAVVGYTNAGKSTLIKALTKA------ALYPNDRLFAT-LDPTLHSA-------------HL--------  222 (410)
T ss_pred             hccccCCCceEEEEeecCccHHHHHHHHHhh------hcCccchhhee-ccchhhhc-------------cC--------
Confidence            3445668999999999999999999999842      111111  111 11111110             11        


Q ss_pred             cchhHHHHHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736          103 VKHSLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE  180 (293)
Q Consensus       103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~  180 (293)
                                     ..+..+++.||.|+..  |..+...|  +..+.+....|.++.|+|.++..-.....    ....
T Consensus       223 ---------------psg~~vlltDTvGFisdLP~~LvaAF--~ATLeeVaeadlllHvvDiShP~ae~q~e----~Vl~  281 (410)
T KOG0410|consen  223 ---------------PSGNFVLLTDTVGFISDLPIQLVAAF--QATLEEVAEADLLLHVVDISHPNAEEQRE----TVLH  281 (410)
T ss_pred             ---------------CCCcEEEEeechhhhhhCcHHHHHHH--HHHHHHHhhcceEEEEeecCCccHHHHHH----HHHH
Confidence                           2344588999999654  55555555  56788888999999999998754322211    1344


Q ss_pred             HHHHHhccC-------EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736          181 AIHQIAFAD-------VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG  253 (293)
Q Consensus       181 ~~~qi~~a~-------iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~  253 (293)
                      .+.+++.++       +=|-||+|..+..-                      ++.     ....+.+|+.+|+|.+++..
T Consensus       282 vL~~igv~~~pkl~~mieVdnkiD~e~~~~----------------------e~E-----~n~~v~isaltgdgl~el~~  334 (410)
T KOG0410|consen  282 VLNQIGVPSEPKLQNMIEVDNKIDYEEDEV----------------------EEE-----KNLDVGISALTGDGLEELLK  334 (410)
T ss_pred             HHHhcCCCcHHHHhHHHhhccccccccccC----------------------ccc-----cCCccccccccCccHHHHHH
Confidence            556666543       33457777654321                      000     01246889999999998887


Q ss_pred             hhhh
Q 022736          254 LLEE  257 (293)
Q Consensus       254 ~l~~  257 (293)
                      .+.+
T Consensus       335 a~~~  338 (410)
T KOG0410|consen  335 AEET  338 (410)
T ss_pred             HHHH
Confidence            7653

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.05  E-value=1.5e-09  Score=105.43  Aligned_cols=136  Identities=15%  Similarity=0.175  Sum_probs=75.8

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      .+..+.||||||..+......        .....+|.+++|||+..........     +.....+...+.++++||+|+
T Consensus        62 ~~~kinlIDTPGh~DF~~ev~--------~~l~~aD~alLVVDa~~G~~~qT~~-----~l~~a~~~~ip~IVviNKiD~  128 (594)
T TIGR01394        62 NGTKINIVDTPGHADFGGEVE--------RVLGMVDGVLLLVDASEGPMPQTRF-----VLKKALELGLKPIVVINKIDR  128 (594)
T ss_pred             CCEEEEEEECCCHHHHHHHHH--------HHHHhCCEEEEEEeCCCCCcHHHHH-----HHHHHHHCCCCEEEEEECCCC
Confidence            456788999999866433221        2235679999999997643222111     233344556788999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc----------hhhhhhhhhhhhccCCCCCCCC
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT----------HVTRLEGLLEEHQYKSSQNLHD  268 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~----------~~~~l~~~l~~~~~~~~~~~~~  268 (293)
                      .++.. ....+++.+.+..+....       ..+. .+++.+||++|.          ++..|.+.+.+....|. ...+
T Consensus       129 ~~a~~-~~v~~ei~~l~~~~g~~~-------e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~-~~~~  198 (594)
T TIGR01394       129 PSARP-DEVVDEVFDLFAELGADD-------EQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK-GDLD  198 (594)
T ss_pred             CCcCH-HHHHHHHHHHHHhhcccc-------cccc-CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC-CCCC
Confidence            75421 112344444444332210       1111 246788999885          56666666554332221 1223


Q ss_pred             CCEEEEEEe
Q 022736          269 NNVRTLSIC  277 (293)
Q Consensus       269 ~~~~~~~~~  277 (293)
                      .+++..++.
T Consensus       199 ~pl~~~V~~  207 (594)
T TIGR01394       199 EPLQMLVTN  207 (594)
T ss_pred             CCEEEEEEE
Confidence            445554443

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12739 elongation factor G; Reviewed

Probab=99.04  E-value=7.3e-10  Score=109.97  Aligned_cols=135  Identities=18%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .++.-|+|+|.+|+|||||+++|+.... -.+++.+.  .|+ ...|...... ..++      .+....+++       
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~--~~~-~~~D~~~~E~-~rgi------ti~~~~~~~-------   68 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVH--DGA-ATMDWMEQEQ-ERGI------TITSAATTC-------   68 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCcccccccc--CCc-cccCCChhHh-hcCC------CccceeEEE-------
Confidence            4677899999999999999999985311 11111111  111 1122211111 0011      111111110       


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                              ..++.++.||||||..+...        ........+|++++|+|+.......+..     ......+.+.+
T Consensus        69 --------~~~~~~i~liDTPG~~~f~~--------e~~~al~~~D~~ilVvDa~~g~~~qt~~-----i~~~~~~~~~p  127 (691)
T PRK12739         69 --------FWKGHRINIIDTPGHVDFTI--------EVERSLRVLDGAVAVFDAVSGVEPQSET-----VWRQADKYGVP  127 (691)
T ss_pred             --------EECCEEEEEEcCCCHHHHHH--------HHHHHHHHhCeEEEEEeCCCCCCHHHHH-----HHHHHHHcCCC
Confidence                    12456789999999754211        1234446779999999998664333221     23334455678


Q ss_pred             CEEEEeCCCCCCCC
Q 022736          189 DVVILNKVDLVSPE  202 (293)
Q Consensus       189 ~iivlNK~D~~~~~  202 (293)
                      .++++||+|+.+.+
T Consensus       128 ~iv~iNK~D~~~~~  141 (691)
T PRK12739        128 RIVFVNKMDRIGAD  141 (691)
T ss_pred             EEEEEECCCCCCCC
Confidence            89999999998643

>cd01882 BMS1 Bms1

Probab=99.04  E-value=5.5e-10  Score=96.00  Aligned_cols=143  Identities=15%  Similarity=0.170  Sum_probs=79.2

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ...+++++|.+|+|||||+|.|+.....   ..+....|. ..                         +++         
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~---~~~~~~~g~-i~-------------------------i~~---------   79 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTK---QNISDIKGP-IT-------------------------VVT---------   79 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhccc---Ccccccccc-EE-------------------------EEe---------
Confidence            3456889999999999999999853111   111111121 00                         000         


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                             ..+.++.++||||..  ...         +.....+|.+++|+|+.......+..     +...+...+.+.+
T Consensus        80 -------~~~~~i~~vDtPg~~--~~~---------l~~ak~aDvVllviDa~~~~~~~~~~-----i~~~l~~~g~p~v  136 (225)
T cd01882          80 -------GKKRRLTFIECPNDI--NAM---------IDIAKVADLVLLLIDASFGFEMETFE-----FLNILQVHGFPRV  136 (225)
T ss_pred             -------cCCceEEEEeCCchH--HHH---------HHHHHhcCEEEEEEecCcCCCHHHHH-----HHHHHHHcCCCeE
Confidence                   133468899999843  111         22235689999999997544322211     2333334456755


Q ss_pred             E-EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc
Q 022736          191 V-ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA  245 (293)
Q Consensus       191 i-vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~  245 (293)
                      + |+||+|+++..   ..+..+.+.|+.....        ..++..+++.+||++.
T Consensus       137 i~VvnK~D~~~~~---~~~~~~~~~l~~~~~~--------~~~~~~ki~~iSa~~~  181 (225)
T cd01882         137 MGVLTHLDLFKKN---KTLRKTKKRLKHRFWT--------EVYQGAKLFYLSGIVH  181 (225)
T ss_pred             EEEEeccccCCcH---HHHHHHHHHHHHHHHH--------hhCCCCcEEEEeeccC
Confidence            5 99999998543   2344555555431110        0112356777777654

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.03  E-value=1e-09  Score=96.84  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=50.5

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      .+.++.+|||||..+.....        ......+|.+++|+|+..........     ........+.+.++++||+|+
T Consensus        62 ~~~~i~liDtPG~~~f~~~~--------~~~l~~aD~~i~Vvd~~~g~~~~~~~-----~~~~~~~~~~p~iivvNK~D~  128 (268)
T cd04170          62 KGHKINLIDTPGYADFVGET--------RAALRAADAALVVVSAQSGVEVGTEK-----LWEFADEAGIPRIIFINKMDR  128 (268)
T ss_pred             CCEEEEEEECcCHHHHHHHH--------HHHHHHCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCcc
Confidence            35678999999975432222        12235678999999998653322110     122344556789999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhh
Q 022736          199 VSPERSGDSLDELEKEIHEI  218 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~l  218 (293)
                      ....     .....+.++..
T Consensus       129 ~~~~-----~~~~~~~l~~~  143 (268)
T cd04170         129 ERAD-----FDKTLAALQEA  143 (268)
T ss_pred             CCCC-----HHHHHHHHHHH
Confidence            7653     34444555443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.03  E-value=1.7e-09  Score=100.89  Aligned_cols=113  Identities=19%  Similarity=0.249  Sum_probs=65.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-HHHhhhcccCCchHHHHHHhc-cCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D~  198 (293)
                      ..+.++||||..+.   .     ..+......+|.+++|+|+.... .....     +....+...+. +.++++||+|+
T Consensus        80 ~~i~liDtPGh~~f---~-----~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-----e~l~~l~~~gi~~iIVvvNK~Dl  146 (406)
T TIGR03680        80 RRVSFVDAPGHETL---M-----ATMLSGAALMDGALLVIAANEPCPQPQTK-----EHLMALEIIGIKNIVIVQNKIDL  146 (406)
T ss_pred             cEEEEEECCCHHHH---H-----HHHHHHHHHCCEEEEEEECCCCccccchH-----HHHHHHHHcCCCeEEEEEEcccc
Confidence            46789999996332   1     11233345679999999998642 11100     01222333333 46888999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+.++.....+++.+.++...            ....+++++|+++|+|++.|.+++...
T Consensus       147 ~~~~~~~~~~~~i~~~l~~~~------------~~~~~ii~vSA~~g~gi~~L~e~L~~~  194 (406)
T TIGR03680       147 VSKEKALENYEEIKEFVKGTV------------AENAPIIPVSALHNANIDALLEAIEKF  194 (406)
T ss_pred             CCHHHHHHHHHHHHhhhhhcc------------cCCCeEEEEECCCCCChHHHHHHHHHh
Confidence            865321011222232222110            011357899999999999999998753

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.03  E-value=1.3e-09  Score=93.24  Aligned_cols=88  Identities=17%  Similarity=0.180  Sum_probs=52.6

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +..+.|+||||..+.....        ......+|++++|+|+..........     ......+.+.+.++++||+|+.
T Consensus        72 ~~~i~iiDTPG~~~f~~~~--------~~~l~~aD~~ilVvD~~~g~~~~t~~-----~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEV--------TAALRLCDGALVVVDAVEGVCVQTET-----VLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             ceEEEEECCCCccccHHHH--------HHHHHhcCeeEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCCcc
Confidence            4667899999987644332        22336789999999998654322210     1122223346889999999986


Q ss_pred             CCCC---CcchHHHHHHHHHhhcC
Q 022736          200 SPER---SGDSLDELEKEIHEINS  220 (293)
Q Consensus       200 ~~~~---~~~~~~~~~~~l~~lnp  220 (293)
                      ..+.   ..+...++...+.++|.
T Consensus       139 ~~e~~~~~~~~~~~~~~ii~~~n~  162 (222)
T cd01885         139 ILELKLSPEEAYQRLARIIEQVNA  162 (222)
T ss_pred             hhhhcCCHHHHHHHHHHHHHHHhH
Confidence            2110   01344555666666654

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.02  E-value=3.8e-09  Score=98.31  Aligned_cols=104  Identities=20%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE-EEEeCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVDL  198 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i-ivlNK~D~  198 (293)
                      +..+.||||||..+.   .     ..+......+|.+++|+|+.........     ++.........+.+ +++||+|+
T Consensus        74 ~~~~~liDtpGh~~f---~-----~~~~~~~~~~D~~ilVvda~~g~~~qt~-----e~l~~~~~~gi~~iIvvvNK~Dl  140 (394)
T TIGR00485        74 NRHYAHVDCPGHADY---V-----KNMITGAAQMDGAILVVSATDGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM  140 (394)
T ss_pred             CEEEEEEECCchHHH---H-----HHHHHHHhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEEeccc
Confidence            456899999997432   1     1223444678999999999864322211     12333444556665 57999999


Q ss_pred             CCCCCCcc-hHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc
Q 022736          199 VSPERSGD-SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT  246 (293)
Q Consensus       199 ~~~~~~~~-~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~  246 (293)
                      ++.+++.. ..+++++.++.+.-.          -..-+++++|+++|.
T Consensus       141 ~~~~~~~~~~~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       141 VDDEELLELVEMEVRELLSEYDFP----------GDDTPIIRGSALKAL  179 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCC----------ccCccEEECcccccc
Confidence            86432100 012344444433210          011356788998874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.02  E-value=3.3e-09  Score=99.14  Aligned_cols=113  Identities=21%  Similarity=0.270  Sum_probs=66.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-HHHhhhcccCCchHHHHHHhc-cCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D~  198 (293)
                      ..+.|+||||..+   +.     ..++.....+|.+++|+|+.... ......     ....+..... +.++|+||+|+
T Consensus        85 ~~i~liDtPG~~~---f~-----~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-----~l~~l~~~~i~~iiVVlNK~Dl  151 (411)
T PRK04000         85 RRVSFVDAPGHET---LM-----ATMLSGAALMDGAILVIAANEPCPQPQTKE-----HLMALDIIGIKNIVIVQNKIDL  151 (411)
T ss_pred             cEEEEEECCCHHH---HH-----HHHHHHHhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEEeecc
Confidence            4688999999532   21     23344556789999999998542 111100     1223333333 46888999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+.++.....+++...++...            ....+++++|+++|+|++.|.+++...
T Consensus       152 ~~~~~~~~~~~~i~~~l~~~~------------~~~~~ii~vSA~~g~gI~~L~~~L~~~  199 (411)
T PRK04000        152 VSKERALENYEQIKEFVKGTV------------AENAPIIPVSALHKVNIDALIEAIEEE  199 (411)
T ss_pred             ccchhHHHHHHHHHHHhcccc------------CCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence            875421011222222222110            012357899999999999999988764

>PRK00007 elongation factor G; Reviewed

Probab=99.02  E-value=1.4e-09  Score=108.03  Aligned_cols=135  Identities=17%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .++.-|+|+|.+|+|||||+++|+..... .++..+.  -|+ ...|...... ..++      .+......+       
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~--~~~-~~~D~~~~E~-~rg~------ti~~~~~~~-------   70 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQ-ERGI------TITSAATTC-------   70 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCcccccccc--CCc-ccCCCCHHHH-hCCC------CEeccEEEE-------
Confidence            35778999999999999999999853111 1111111  111 1112111111 0011      111100100       


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                              ...+..+.||||||..+...        ........+|++++|+|+.......+..     ......+...+
T Consensus        71 --------~~~~~~~~liDTPG~~~f~~--------ev~~al~~~D~~vlVvda~~g~~~qt~~-----~~~~~~~~~~p  129 (693)
T PRK00007         71 --------FWKDHRINIIDTPGHVDFTI--------EVERSLRVLDGAVAVFDAVGGVEPQSET-----VWRQADKYKVP  129 (693)
T ss_pred             --------EECCeEEEEEeCCCcHHHHH--------HHHHHHHHcCEEEEEEECCCCcchhhHH-----HHHHHHHcCCC
Confidence                    12456799999999754211        1233446678999999998765443321     23345556778


Q ss_pred             CEEEEeCCCCCCCC
Q 022736          189 DVVILNKVDLVSPE  202 (293)
Q Consensus       189 ~iivlNK~D~~~~~  202 (293)
                      .++++||+|+.+++
T Consensus       130 ~iv~vNK~D~~~~~  143 (693)
T PRK00007        130 RIAFVNKMDRTGAD  143 (693)
T ss_pred             EEEEEECCCCCCCC
Confidence            99999999998654

>PLN03126 Elongation factor Tu; Provisional

Probab=99.01  E-value=6.2e-10  Score=105.43  Aligned_cols=70  Identities=24%  Similarity=0.241  Sum_probs=44.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL  198 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~  198 (293)
                      +..+.||||||..+.   .     .........+|.+++|||+.........     ++.......+.+ .++++||+|+
T Consensus       143 ~~~i~liDtPGh~~f---~-----~~~~~g~~~aD~ailVVda~~G~~~qt~-----e~~~~~~~~gi~~iIvvvNK~Dl  209 (478)
T PLN03126        143 NRHYAHVDCPGHADY---V-----KNMITGAAQMDGAILVVSGADGPMPQTK-----EHILLAKQVGVPNMVVFLNKQDQ  209 (478)
T ss_pred             CcEEEEEECCCHHHH---H-----HHHHHHHhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEecccc
Confidence            457899999996532   1     1223344578999999999865433221     123344445566 4678999999


Q ss_pred             CCCC
Q 022736          199 VSPE  202 (293)
Q Consensus       199 ~~~~  202 (293)
                      ++.+
T Consensus       210 ~~~~  213 (478)
T PLN03126        210 VDDE  213 (478)
T ss_pred             cCHH
Confidence            8743

>cd04169 RF3 RF3 subfamily

Probab=99.01  E-value=2.8e-09  Score=93.94  Aligned_cols=71  Identities=18%  Similarity=0.156  Sum_probs=45.2

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      .+.++.++||||..+.....        ......+|.+++|+|+..........     +.........|.++++||+|+
T Consensus        69 ~~~~i~liDTPG~~df~~~~--------~~~l~~aD~~IlVvda~~g~~~~~~~-----i~~~~~~~~~P~iivvNK~D~  135 (267)
T cd04169          69 RDCVINLLDTPGHEDFSEDT--------YRTLTAVDSAVMVIDAAKGVEPQTRK-----LFEVCRLRGIPIITFINKLDR  135 (267)
T ss_pred             CCEEEEEEECCCchHHHHHH--------HHHHHHCCEEEEEEECCCCccHHHHH-----HHHHHHhcCCCEEEEEECCcc
Confidence            45778999999976533211        12234689999999997643322110     122333446788999999998


Q ss_pred             CCCC
Q 022736          199 VSPE  202 (293)
Q Consensus       199 ~~~~  202 (293)
                      .+..
T Consensus       136 ~~a~  139 (267)
T cd04169         136 EGRD  139 (267)
T ss_pred             CCCC
Confidence            7653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.00  E-value=6.3e-10  Score=103.80  Aligned_cols=108  Identities=16%  Similarity=0.214  Sum_probs=62.3

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL  198 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~  198 (293)
                      +..+.||||||..+.   ..     ........+|.+++|||+.........     +.......++.+ .++++||+|+
T Consensus        79 ~~~~~liDtPGh~~f---~~-----~~~~~~~~aD~allVVda~~G~~~qt~-----~~~~~~~~~~~~~iivviNK~D~  145 (406)
T TIGR02034        79 KRKFIVADTPGHEQY---TR-----NMATGASTADLAVLLVDARKGVLEQTR-----RHSYIASLLGIRHVVLAVNKMDL  145 (406)
T ss_pred             CeEEEEEeCCCHHHH---HH-----HHHHHHhhCCEEEEEEECCCCCccccH-----HHHHHHHHcCCCcEEEEEEeccc
Confidence            457899999995432   11     122345678999999999765432211     012233444444 5679999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                      .+..+  ..++.+.+.++.+....       + +...+++++||.+|+|++.
T Consensus       146 ~~~~~--~~~~~i~~~~~~~~~~~-------~-~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       146 VDYDE--EVFENIKKDYLAFAEQL-------G-FRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             ccchH--HHHHHHHHHHHHHHHHc-------C-CCCccEEEeecccCCCCcc
Confidence            86432  22334444443322110       0 1113578999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04129 Rho2 Rho2 subfamily

Probab=98.99  E-value=2.7e-09  Score=88.95  Aligned_cols=113  Identities=13%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      .++.++||+|.........        .....++.++++.|............   .+...+.+.  ..+.++|.||+|+
T Consensus        49 ~~l~i~Dt~g~~~~~~~~~--------~~~~~a~~~llv~~i~~~~s~~~~~~---~~~~~i~~~~~~~piilvgnK~Dl  117 (187)
T cd04129          49 VQLALWDTAGQEEYERLRP--------LSYSKAHVILIGFAVDTPDSLENVRT---KWIEEVRRYCPNVPVILVGLKKDL  117 (187)
T ss_pred             EEEEEEECCCChhccccch--------hhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEeeChhh
Confidence            3467999999643321111        11245677888888765432211100   012222222  3578999999998


Q ss_pred             CCCCC--------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPER--------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~--------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+...        .....+......+..              ....++.+||++|.|++++..++...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~  171 (187)
T cd04129         118 RQDAVAKEEYRTQRFVPIQQGKRVAKEI--------------GAKKYMECSALTGEGVDDVFEAATRA  171 (187)
T ss_pred             hhCcccccccccCCcCCHHHHHHHHHHh--------------CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence            54210        001112222222222              12356889999999999999888653

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01850 CDC_Septin CDC/Septin

Probab=98.99  E-value=9.4e-10  Score=97.38  Aligned_cols=62  Identities=15%  Similarity=0.276  Sum_probs=35.7

Q ss_pred             cccccEEEEEcccc-hHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736          151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI  218 (293)
Q Consensus       151 ~~~d~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l  218 (293)
                      .+++++++++++.. .....+..     ....+.+ ..+.++|+||+|+++.++.......+.+.++..
T Consensus       113 ~rvh~~ly~i~~~~~~l~~~D~~-----~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~  175 (276)
T cd01850         113 TRVHACLYFIEPTGHGLKPLDIE-----FMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEH  175 (276)
T ss_pred             CceEEEEEEEeCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHc
Confidence            36888999999864 22222210     1222222 467899999999987554323334444455544

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04133 Rop_like Rop subfamily

Probab=98.98  E-value=6.3e-09  Score=86.04  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=63.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||+|..+...+...        .....+++|+|.|.++.........   .+...+.+.  ..+.++|.||+|+
T Consensus        49 v~l~i~Dt~G~~~~~~~~~~--------~~~~a~~~ilvyd~~~~~Sf~~~~~---~w~~~i~~~~~~~piilvgnK~Dl  117 (176)
T cd04133          49 VNLGLWDTAGQEDYNRLRPL--------SYRGADVFVLAFSLISRASYENVLK---KWVPELRHYAPNVPIVLVGTKLDL  117 (176)
T ss_pred             EEEEEEECCCCccccccchh--------hcCCCcEEEEEEEcCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeChhh
Confidence            45779999997654333321        1246788999999876554322100   011112221  3467899999999


Q ss_pred             CCCCC--------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPER--------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~--------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+...        +....++..+..+..+              ....+.+||++|.|++++-..+..
T Consensus       118 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--------------~~~~~E~SAk~~~nV~~~F~~~~~  170 (176)
T cd04133         118 RDDKQYLADHPGASPITTAQGEELRKQIG--------------AAAYIECSSKTQQNVKAVFDAAIK  170 (176)
T ss_pred             ccChhhhhhccCCCCCCHHHHHHHHHHcC--------------CCEEEECCCCcccCHHHHHHHHHH
Confidence            65320        0012233333333221              123678999999999988776654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.97  E-value=3.6e-09  Score=99.66  Aligned_cols=112  Identities=14%  Similarity=0.193  Sum_probs=68.8

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch-HHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLV  199 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~~  199 (293)
                      .+.||||||..+   +.     ..++.....+|.+++|||+... ......     ++......++.+ .++++||+|++
T Consensus       118 ~i~~IDtPGH~~---fi-----~~m~~g~~~~D~alLVVda~~g~~~~qT~-----ehl~i~~~lgi~~iIVvlNKiDlv  184 (460)
T PTZ00327        118 HVSFVDCPGHDI---LM-----ATMLNGAAVMDAALLLIAANESCPQPQTS-----EHLAAVEIMKLKHIIILQNKIDLV  184 (460)
T ss_pred             eEeeeeCCCHHH---HH-----HHHHHHHhhCCEEEEEEECCCCccchhhH-----HHHHHHHHcCCCcEEEEEeccccc
Confidence            578999999432   22     2334455678999999999863 222111     122333444444 57899999998


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.++.....+++++.++...            ....+++++||++|+|++.|.++|.+.
T Consensus       185 ~~~~~~~~~~ei~~~l~~~~------------~~~~~iipVSA~~G~nI~~Ll~~L~~~  231 (460)
T PTZ00327        185 KEAQAQDQYEEIRNFVKGTI------------ADNAPIIPISAQLKYNIDVVLEYICTQ  231 (460)
T ss_pred             CHHHHHHHHHHHHHHHHhhc------------cCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence            64422122233333333211            123578999999999999999998753

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.97  E-value=1.7e-08  Score=83.08  Aligned_cols=148  Identities=20%  Similarity=0.240  Sum_probs=80.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcC-CCCcchhhhhhccCcceeeccchhHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +++++|++|+||||+...+...  ..+.+++++..|+.. ......+.... ..++.          -+.+....+..+.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~-~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~   70 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR-PAAIEQLRVLGEQVGVP----------VFEEGEGKDPVSI   70 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC-hHHHHHHHHhcccCCeE----------EEecCCCCCHHHH
Confidence            6789999999999999998764  457899999988753 11111111100 00100          0111111222222


Q ss_pred             HHHHH--hhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          111 LEQLV--QRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       111 l~~l~--~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                      +.+.+  ....+.+++||||+|... .......+.   .+......+.+++|+|+.........      .....++.+ 
T Consensus        71 ~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~---~l~~~~~~~~~~lVv~~~~~~~~~~~------~~~~~~~~~-  140 (173)
T cd03115          71 AKRAIEHAREENFDVVIVDTAGRLQIDENLMEELK---KIKRVVKPDEVLLVVDAMTGQDAVNQ------AKAFNEALG-  140 (173)
T ss_pred             HHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHH---HHHhhcCCCeEEEEEECCCChHHHHH------HHHHHhhCC-
Confidence            22211  123578999999999653 222222211   11222347889999999654433221      122222333 


Q ss_pred             cCEEEEeCCCCCCCC
Q 022736          188 ADVVILNKVDLVSPE  202 (293)
Q Consensus       188 a~iivlNK~D~~~~~  202 (293)
                      .+.+|+||.|.....
T Consensus       141 ~~~viltk~D~~~~~  155 (173)
T cd03115         141 ITGVILTKLDGDARG  155 (173)
T ss_pred             CCEEEEECCcCCCCc
Confidence            689999999976543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.97  E-value=7.4e-09  Score=86.10  Aligned_cols=109  Identities=15%  Similarity=0.171  Sum_probs=59.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+-|+||+|......+...        ....++++++|.|.++.........   .+...+.+.  ..+.++|.||+|+
T Consensus        53 ~~l~iwDtaG~e~~~~~~~~--------~~~~ad~~ilvyDit~~~Sf~~~~~---~w~~~i~~~~~~~piilVgNK~DL  121 (182)
T cd04172          53 IELSLWDTSGSPYYDNVRPL--------SYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL  121 (182)
T ss_pred             EEEEEEECCCchhhHhhhhh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEeEChhh
Confidence            45779999997543332221        1246788999999887544322100   011112221  3467899999998


Q ss_pred             CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch-hhhhhhh
Q 022736          199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGL  254 (293)
Q Consensus       199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~-~~~l~~~  254 (293)
                      .+..          ++....++..+..++++              ....+.+||++|+| ++++-..
T Consensus       122 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--------------~~~~~E~SAk~~~n~v~~~F~~  174 (182)
T cd04172         122 RTDLTTLVELSNHRQTPVSYDQGANMAKQIG--------------AATYIECSALQSENSVRDIFHV  174 (182)
T ss_pred             hcChhhHHHHHhcCCCCCCHHHHHHHHHHcC--------------CCEEEECCcCCCCCCHHHHHHH
Confidence            5421          00012223333333222              12467899999998 8876544

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=1.3e-09  Score=97.00  Aligned_cols=172  Identities=21%  Similarity=0.291  Sum_probs=92.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccC-C----------CCeEEEEEcC-----CCCccccchhhhhcCCCCcchhhhhhc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGK-H----------GKRIAVILNE-----FGEEIGVERAMINEGEGGALVEEWVEL   94 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~-~----------~~~vavv~~d-----~g~~~~~d~~~~~~~~~~~~~~~~~~l   94 (293)
                      ..|.|.++|....||||||++|+... +          ..-++++..+     +|++..+|...-..+-+. .   --.+
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~-F---G~af  132 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNK-F---GNAF  132 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhh-h---HHHH
Confidence            57999999999999999999999752 1          2233444432     122122221100000000 0   0011


Q ss_pred             cCcceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHH--HHhhhcchhhcc-ccccccEEEEEcccchHHHHhh
Q 022736           95 ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLES-AVRLDSIITVVDAKNLLFQIDK  171 (293)
Q Consensus        95 ~~gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~--~~~~~~~~~~~~-~~~~d~vi~vvDa~~~~~~~~~  171 (293)
                      .|-..|..+.+.+.+            .+-||||||+......  .+.+=....++. ..++|.|+++.|+....- .+ 
T Consensus       133 lnRf~csqmp~~vLe------------~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI-sd-  198 (532)
T KOG1954|consen  133 LNRFMCSQLPNQVLE------------SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SD-  198 (532)
T ss_pred             HHHHHHhcCChhhhh------------heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc-cH-
Confidence            123334444443333            3669999997653322  221111111111 147899999999964321 11 


Q ss_pred             hcccCCchHHHHHH---hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736          172 YRHLSSYPEAIHQI---AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI  225 (293)
Q Consensus       172 ~~~~~~~~~~~~qi---~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~  225 (293)
                           ++...+.++   +.-..||+||+|.++.++.......+...|..+-..+.+.
T Consensus       199 -----Ef~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~  250 (532)
T KOG1954|consen  199 -----EFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVS  250 (532)
T ss_pred             -----HHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcce
Confidence                 133344444   4567999999999998765555555666666555444443

>smart00053 DYNc Dynamin, GTPase

Probab=98.96  E-value=5.3e-09  Score=90.27  Aligned_cols=77  Identities=14%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             CCCEEEEecCCCCCc------HHHHHhh--hcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736          120 RLDHILLETTGLANP------APLASVL--WLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV  191 (293)
Q Consensus       120 ~~d~iiidt~G~~~~------~~~~~~~--~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii  191 (293)
                      .+++.||||||+...      ..+...+  +...++..  .-+.+++|+|+.......+..    .+...+.......++
T Consensus       124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~--~~~IIL~Vvda~~d~~~~d~l----~ia~~ld~~~~rti~  197 (240)
T smart00053      124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK--EECLILAVTPANVDLANSDAL----KLAKEVDPQGERTIG  197 (240)
T ss_pred             CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC--ccCeEEEEEECCCCCCchhHH----HHHHHHHHcCCcEEE
Confidence            489999999998632      2221111  11122221  234789999987543322210    123344555678899


Q ss_pred             EEeCCCCCCCC
Q 022736          192 ILNKVDLVSPE  202 (293)
Q Consensus       192 vlNK~D~~~~~  202 (293)
                      |+||+|..+..
T Consensus       198 ViTK~D~~~~~  208 (240)
T smart00053      198 VITKLDLMDEG  208 (240)
T ss_pred             EEECCCCCCcc
Confidence            99999998754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.96  E-value=3.5e-08  Score=90.14  Aligned_cols=160  Identities=19%  Similarity=0.219  Sum_probs=91.6

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee--eccchh
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC--CTVKHS  106 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic--c~~~~~  106 (293)
                      +..+++|+|+.|+||||++..|...  ..+.+++++..|... .+.-..+...          .+ ..||-.  +....+
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-iaAvEQLk~y----------ae-~lgipv~v~~d~~~  307 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDY----------VK-TIGFEVIAVRDEAA  307 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHH----------hh-hcCCcEEecCCHHH
Confidence            3568999999999999999999764  457899999988753 1111111110          01 112222  223445


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                      +..++..+.. ..++|+|||||+|-.. .......+  ...+. ....+.+++|+|+.........      ....+.. 
T Consensus       308 L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL--~~~lk-~~~PdevlLVLsATtk~~d~~~------i~~~F~~-  376 (436)
T PRK11889        308 MTRALTYFKE-EARVDYILIDTAGKNYRASETVEEM--IETMG-QVEPDYICLTLSASMKSKDMIE------IITNFKD-  376 (436)
T ss_pred             HHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHH--HHHHh-hcCCCeEEEEECCccChHHHHH------HHHHhcC-
Confidence            6666655432 2368999999999543 23323222  11121 2234567888998755443322      1222333 


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      ...+-+|+||.|-...-      ..+.+.....+
T Consensus       377 ~~idglI~TKLDET~k~------G~iLni~~~~~  404 (436)
T PRK11889        377 IHIDGIVFTKFDETASS------GELLKIPAVSS  404 (436)
T ss_pred             CCCCEEEEEcccCCCCc------cHHHHHHHHHC
Confidence            24689999999976533      34444444443

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.96  E-value=5.2e-09  Score=88.30  Aligned_cols=106  Identities=11%  Similarity=0.060  Sum_probs=62.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+-|+||+|......+...+        ....+++|+|+|.+...+.....    .+...+.+.  ..+.++|.||+|+
T Consensus        44 ~~l~iwDt~G~e~~~~l~~~~--------~~~ad~~ilV~D~t~~~S~~~i~----~w~~~i~~~~~~~piilvgNK~Dl  111 (200)
T smart00176       44 IRFNVWDTAGQEKFGGLRDGY--------YIQGQCAIIMFDVTARVTYKNVP----NWHRDLVRVCENIPIVLCGNKVDV  111 (200)
T ss_pred             EEEEEEECCCchhhhhhhHHH--------hcCCCEEEEEEECCChHHHHHHH----HHHHHHHHhCCCCCEEEEEECccc
Confidence            457799999976544333222        14578899999998765432210    011112221  3478999999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .....   ..+.+ ...+. +              ...++.+||++|+|++++..|+..
T Consensus       112 ~~~~v---~~~~~-~~~~~-~--------------~~~~~e~SAk~~~~v~~~F~~l~~  151 (200)
T smart00176      112 KDRKV---KAKSI-TFHRK-K--------------NLQYYDISAKSNYNFEKPFLWLAR  151 (200)
T ss_pred             ccccC---CHHHH-HHHHH-c--------------CCEEEEEeCCCCCCHHHHHHHHHH
Confidence            64321   11221 11111 1              024578999999999999888864

Ran is involved in the active transport of proteins through nuclear pores.

>cd04131 Rnd Rnd subfamily

Probab=98.95  E-value=6.6e-09  Score=86.07  Aligned_cols=110  Identities=13%  Similarity=0.141  Sum_probs=58.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||+|......+...        ....++++++|.|.++.........   .+...+.+.  ..+.++|.||+|+
T Consensus        49 ~~l~iwDt~G~~~~~~~~~~--------~~~~a~~~ilvfdit~~~Sf~~~~~---~w~~~i~~~~~~~~iilVgnK~DL  117 (178)
T cd04131          49 IELSLWDTSGSPYYDNVRPL--------CYPDSDAVLICFDISRPETLDSVLK---KWRGEIQEFCPNTKVLLVGCKTDL  117 (178)
T ss_pred             EEEEEEECCCchhhhhcchh--------hcCCCCEEEEEEECCChhhHHHHHH---HHHHHHHHHCCCCCEEEEEEChhh
Confidence            45779999996433222211        1246788999999876544322100   012122221  3467888999998


Q ss_pred             CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch-hhhhhhhh
Q 022736          199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGLL  255 (293)
Q Consensus       199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~-~~~l~~~l  255 (293)
                      .+..          ++....++..+.-++++              ....+.+||++|++ ++++-..+
T Consensus       118 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~--------------~~~~~E~SA~~~~~~v~~~F~~~  171 (178)
T cd04131         118 RTDLSTLMELSHQRQAPVSYEQGCAIAKQLG--------------AEIYLECSAFTSEKSVRDIFHVA  171 (178)
T ss_pred             hcChhHHHHHHhcCCCCCCHHHHHHHHHHhC--------------CCEEEECccCcCCcCHHHHHHHH
Confidence            6421          00011222222222221              12457899999995 87765443

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.95  E-value=8.1e-10  Score=90.22  Aligned_cols=69  Identities=22%  Similarity=0.233  Sum_probs=39.2

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~  196 (293)
                      ..++.||||||+........... ..   .....|.+++|+++.......+..    .+...........++|+||+
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~~~~-~~---~~~~~d~vi~V~~~~~~~~~~~~~----~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHTEIT-EE---YLPKADVVIFVVDANQDLTESDME----FLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTSHHH-HH---HHSTTEEEEEEEETTSTGGGHHHH----HHHHHHTTTCSSEEEEEE-G
T ss_pred             ccceEEEeCCccccchhhhHHHH-HH---hhccCCEEEEEeccCcccchHHHH----HHHHHhcCCCCeEEEEEcCC
Confidence            46789999999865332221111 12   225778999999998754432211    02223333444578888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.95  E-value=1e-08  Score=88.34  Aligned_cols=110  Identities=13%  Similarity=0.115  Sum_probs=60.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||+|......+....        ...++++++|.|.++.........   .+...+.+.  ..+.++|.||+|+
T Consensus        61 v~l~iwDTaG~e~~~~~~~~~--------~~~ad~vIlVyDit~~~Sf~~~~~---~w~~~i~~~~~~~piilVgNK~DL  129 (232)
T cd04174          61 VELSLWDTSGSPYYDNVRPLC--------YSDSDAVLLCFDISRPETVDSALK---KWKAEIMDYCPSTRILLIGCKTDL  129 (232)
T ss_pred             EEEEEEeCCCchhhHHHHHHH--------cCCCcEEEEEEECCChHHHHHHHH---HHHHHHHHhCCCCCEEEEEECccc
Confidence            457899999965433333221        246788999999987554322100   011122221  2457899999998


Q ss_pred             CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc-hhhhhhhhh
Q 022736          199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLL  255 (293)
Q Consensus       199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~-~~~~l~~~l  255 (293)
                      .+..          .+....++..+..++++              ...++.+||++|+ +++++-..+
T Consensus       130 ~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~--------------~~~~~EtSAktg~~~V~e~F~~~  183 (232)
T cd04174         130 RTDLSTLMELSNQKQAPISYEQGCALAKQLG--------------AEVYLECSAFTSEKSIHSIFRSA  183 (232)
T ss_pred             ccccchhhhhccccCCcCCHHHHHHHHHHcC--------------CCEEEEccCCcCCcCHHHHHHHH
Confidence            5421          00012233333333222              1235789999997 787665443

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.94  E-value=1.1e-08  Score=90.77  Aligned_cols=146  Identities=20%  Similarity=0.245  Sum_probs=85.8

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCC-CCccccchhhhhcCCCCcchhhhhhccCcceeec--c
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF-GEEIGVERAMINEGEGGALVEEWVELANGCICCT--V  103 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~-g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~  103 (293)
                      ..++-|++++|..|+||||.|-+|...  ..|+++.+...|. -+ -.++. +-.++           -..||-+-+  .
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA-aAiEQ-L~~w~-----------er~gv~vI~~~~  202 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA-AAIEQ-LEVWG-----------ERLGVPVISGKE  202 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH-HHHHH-HHHHH-----------HHhCCeEEccCC
Confidence            456778999999999999999999874  5689998888763 11 00110 00000           001111111  0


Q ss_pred             ch----hHHHHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhcccccc-----ccEEEEEcccchHHHHhhhc
Q 022736          104 KH----SLVQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRL-----DSIITVVDAKNLLFQIDKYR  173 (293)
Q Consensus       104 ~~----~l~~~l~~l~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~-----d~vi~vvDa~~~~~~~~~~~  173 (293)
                      ..    -..+++..  ....++|++||||+| +.....+++.+.  ...+-..+.     +-+++++||..+.+.+..  
T Consensus       203 G~DpAaVafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~--KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q--  276 (340)
T COG0552         203 GADPAAVAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELK--KIVRVIKKDDPDAPHEILLVLDATTGQNALSQ--  276 (340)
T ss_pred             CCCcHHHHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHH--HHHHHhccccCCCCceEEEEEEcccChhHHHH--
Confidence            11    12333332  224689999999999 777777765431  111111122     237777899987765543  


Q ss_pred             ccCCchHHHHHHhccCEEEEeCCCC
Q 022736          174 HLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       174 ~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                           ...+...-.-+-++++|+|-
T Consensus       277 -----Ak~F~eav~l~GiIlTKlDg  296 (340)
T COG0552         277 -----AKIFNEAVGLDGIILTKLDG  296 (340)
T ss_pred             -----HHHHHHhcCCceEEEEeccc
Confidence                 23444444568999999994

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.94  E-value=2.1e-09  Score=94.37  Aligned_cols=95  Identities=23%  Similarity=0.181  Sum_probs=62.2

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ..-..++++|||++|||||+|+|.    +.+..+-..+|.+-..+...              .                 
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LT----nt~seva~y~FTTl~~VPG~--------------l-----------------  105 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLT----NTKSEVADYPFTTLEPVPGM--------------L-----------------  105 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHh----CCCccccccCceecccccce--------------E-----------------
Confidence            345569999999999999999999    44444445555431111110              0                 


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHH
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF  167 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~  167 (293)
                             ...+.++-++|+||+.+.+....... ...+.....+|.|++|+|+.....
T Consensus       106 -------~Y~ga~IQild~Pgii~gas~g~grG-~~vlsv~R~ADlIiiVld~~~~~~  155 (365)
T COG1163         106 -------EYKGAQIQLLDLPGIIEGASSGRGRG-RQVLSVARNADLIIIVLDVFEDPH  155 (365)
T ss_pred             -------eecCceEEEEcCcccccCcccCCCCc-ceeeeeeccCCEEEEEEecCCChh
Confidence                   13556788999999877655443211 233556678999999999986544

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.94  E-value=1.5e-08  Score=82.16  Aligned_cols=108  Identities=15%  Similarity=0.066  Sum_probs=69.4

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-ccCEEEEeCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVDL  198 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a~iivlNK~D~  198 (293)
                      +...-+++|||.....-+++.+.        ......|++||++........     .....+.... .+.+|.+||.|+
T Consensus        67 ~~~v~LfgtPGq~RF~fm~~~l~--------~ga~gaivlVDss~~~~~~a~-----~ii~f~~~~~~ip~vVa~NK~DL  133 (187)
T COG2229          67 DTGVHLFGTPGQERFKFMWEILS--------RGAVGAIVLVDSSRPITFHAE-----EIIDFLTSRNPIPVVVAINKQDL  133 (187)
T ss_pred             cceEEEecCCCcHHHHHHHHHHh--------CCcceEEEEEecCCCcchHHH-----HHHHHHhhccCCCEEEEeecccc
Confidence            35678999999876554444332        236778999999875543110     0122222223 578999999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .++.    ..+.+++.+..-+-.             .+++.+++..+++..+....+..
T Consensus       134 ~~a~----ppe~i~e~l~~~~~~-------------~~vi~~~a~e~~~~~~~L~~ll~  175 (187)
T COG2229         134 FDAL----PPEKIREALKLELLS-------------VPVIEIDATEGEGARDQLDVLLL  175 (187)
T ss_pred             CCCC----CHHHHHHHHHhccCC-------------CceeeeecccchhHHHHHHHHHh
Confidence            8875    457888887755411             35677888888887766555543

>cd04103 Centaurin_gamma Centaurin gamma

Probab=98.94  E-value=2.7e-09  Score=86.58  Aligned_cols=104  Identities=10%  Similarity=0.044  Sum_probs=58.6

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD  197 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~D  197 (293)
                      .+.|+||+|..... .            ....+++++|.|.++.........    +...+.+.    ..|.++|.||.|
T Consensus        48 ~l~i~D~~g~~~~~-~------------~~~~~~~ilv~d~~~~~sf~~~~~----~~~~i~~~~~~~~~piilvgnK~D  110 (158)
T cd04103          48 LLLIRDEGGAPDAQ-F------------ASWVDAVIFVFSLENEASFQTVYN----LYHQLSSYRNISEIPLILVGTQDA  110 (158)
T ss_pred             EEEEEECCCCCchh-H------------HhcCCEEEEEEECCCHHHHHHHHH----HHHHHHHhcCCCCCCEEEEeeHHH
Confidence            36689999985421 1            134678999999887654332110    11122222    246789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.....+....+..++..++...              ..++.+||+++.|++++-.++.
T Consensus       111 l~~~~~~~v~~~~~~~~~~~~~~--------------~~~~e~SAk~~~~i~~~f~~~~  155 (158)
T cd04103         111 ISESNPRVIDDARARQLCADMKR--------------CSYYETCATYGLNVERVFQEAA  155 (158)
T ss_pred             hhhcCCcccCHHHHHHHHHHhCC--------------CcEEEEecCCCCCHHHHHHHHH
Confidence            85321111122222232222211              2467899999999998876654

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=2.1e-09  Score=86.07  Aligned_cols=163  Identities=19%  Similarity=0.136  Sum_probs=97.3

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++|.|.-|||||||+.++-...        +..+|. .  +...+         -.++-+++|-+|-.            
T Consensus        20 vlIlgldnAGKttfLe~~Kt~~--------~~~~~~-l--~~~ki---------~~tvgLnig~i~v~------------   67 (197)
T KOG0076|consen   20 VLILGLDNAGKTTFLEALKTDF--------SKAYGG-L--NPSKI---------TPTVGLNIGTIEVC------------   67 (197)
T ss_pred             heeeccccCCchhHHHHHHHHH--------HhhhcC-C--CHHHe---------ecccceeecceeec------------
Confidence            6789999999999999986431        111121 1  11111         12334455545421            


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN  194 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN  194 (293)
                           +-...++|..|.-...++...+.        ..+.++++++||.+............+..+--.+-+.|.++.+|
T Consensus        68 -----~~~l~fwdlgGQe~lrSlw~~yY--------~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan  134 (197)
T KOG0076|consen   68 -----NAPLSFWDLGGQESLRSLWKKYY--------WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN  134 (197)
T ss_pred             -----cceeEEEEcCChHHHHHHHHHHH--------HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence                 12357999999877666665443        45678999999987443222111111111111333567899999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHH--hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIH--EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~--~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |-|+-+..+    ...+.....  ..+|..           --.+.++|+.+|+|+.+-..|+..
T Consensus       135 kqd~q~~~~----~~El~~~~~~~e~~~~r-----------d~~~~pvSal~gegv~egi~w~v~  184 (197)
T KOG0076|consen  135 KQDLQNAME----AAELDGVFGLAELIPRR-----------DNPFQPVSALTGEGVKEGIEWLVK  184 (197)
T ss_pred             hhhhhhhhh----HHHHHHHhhhhhhcCCc-----------cCccccchhhhcccHHHHHHHHHH
Confidence            999887653    344444443  333321           135679999999999998888864

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.9e-09  Score=89.22  Aligned_cols=138  Identities=20%  Similarity=0.273  Sum_probs=86.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ..+-++++|+.+||||+|+-.|...  ..+..+.+-++.+  +..+                                  
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~g--s~~~TvtSiepn~--a~~r----------------------------------   78 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITG--SHRGTVTSIEPNE--ATYR----------------------------------   78 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcC--CccCeeeeeccce--eeEe----------------------------------
Confidence            3468999999999999999999865  2333455555543  0000                                  


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-H----HH
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-H----QI  185 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~----qi  185 (293)
                             .+....-+||.||-.........+     +.+..++..+|||||+..+.........+  +...+ .    .-
T Consensus        79 -------~gs~~~~LVD~PGH~rlR~kl~e~-----~~~~~~akaiVFVVDSa~f~k~vrdvaef--Lydil~~~~~~~~  144 (238)
T KOG0090|consen   79 -------LGSENVTLVDLPGHSRLRRKLLEY-----LKHNYSAKAIVFVVDSATFLKNVRDVAEF--LYDILLDSRVKKN  144 (238)
T ss_pred             -------ecCcceEEEeCCCcHHHHHHHHHH-----ccccccceeEEEEEeccccchhhHHHHHH--HHHHHHhhccccC
Confidence                   122235699999977665555333     34446788899999999877655443111  01111 1    11


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcC
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINS  220 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp  220 (293)
                      ..+.+|+.||.|+..+...+....++++.|+.++.
T Consensus       145 ~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~  179 (238)
T KOG0090|consen  145 KPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRE  179 (238)
T ss_pred             CCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHH
Confidence            23568888999998776544556666666665553

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.93  E-value=1.5e-09  Score=102.11  Aligned_cols=114  Identities=14%  Similarity=0.288  Sum_probs=60.0

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D  197 (293)
                      ++..+.|+||||..+   +.     ..+.......|.+++|+|+.........  .............. +.++++||+|
T Consensus        83 ~~~~i~iiDtpGh~~---f~-----~~~~~~~~~aD~~ilVvDa~~~~~~~~~--~t~~~~~~~~~~~~~~iIVviNK~D  152 (426)
T TIGR00483        83 DKYEVTIVDCPGHRD---FI-----KNMITGASQADAAVLVVAVGDGEFEVQP--QTREHAFLARTLGINQLIVAINKMD  152 (426)
T ss_pred             CCeEEEEEECCCHHH---HH-----HHHHhhhhhCCEEEEEEECCCCCcccCC--chHHHHHHHHHcCCCeEEEEEEChh
Confidence            356789999999532   22     1223334678999999999865211000  00001112233333 4677999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                      +.+..+  .....+.+.++.+......      ......++++||++|.|+.+
T Consensus       153 l~~~~~--~~~~~~~~ei~~~~~~~g~------~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       153 SVNYDE--EEFEAIKKEVSNLIKKVGY------NPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ccCccH--HHHHHHHHHHHHHHHHcCC------CcccceEEEeeccccccccc
Confidence            975321  1222333333322111000      00123578999999999865

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.92  E-value=3.2e-08  Score=87.38  Aligned_cols=156  Identities=17%  Similarity=0.217  Sum_probs=81.8

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchh
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      .+..+++++|++|+||||++..|...  ..|.+++++..|... .+-...+-.. ...++.   +.....+   ......
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r-~~a~~ql~~~~~~~~i~---~~~~~~~---~dp~~~  142 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR-AAAIEQLEEWAKRLGVD---VIKQKEG---ADPAAV  142 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC-HHHHHHHHHHHHhCCeE---EEeCCCC---CCHHHH
Confidence            44678999999999999999999763  457899999988632 1111111000 000000   0000000   000011


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhh-cchhhc--cccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI  182 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~-~~~~~~--~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~  182 (293)
                      ....+....  ..++|++||||||.... ......+. +.....  .....+.+++|+|+.........       ...+
T Consensus       143 ~~~~l~~~~--~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~-------~~~f  213 (272)
T TIGR00064       143 AFDAIQKAK--ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQ-------AKVF  213 (272)
T ss_pred             HHHHHHHHH--HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHH-------HHHH
Confidence            122233222  36799999999996542 22221110 000000  01226788999999765443321       1222


Q ss_pred             HHHhccCEEEEeCCCCCCC
Q 022736          183 HQIAFADVVILNKVDLVSP  201 (293)
Q Consensus       183 ~qi~~a~iivlNK~D~~~~  201 (293)
                      .+.-..+-+|+||.|....
T Consensus       214 ~~~~~~~g~IlTKlDe~~~  232 (272)
T TIGR00064       214 NEAVGLTGIILTKLDGTAK  232 (272)
T ss_pred             HhhCCCCEEEEEccCCCCC
Confidence            2223478999999997644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.92  E-value=2.6e-09  Score=96.16  Aligned_cols=42  Identities=29%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      ..+-++||||+.........+ ....+.....+|.+++|+|+.
T Consensus        69 v~i~l~D~aGlv~ga~~~~gl-g~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          69 VPVELIDVAGLVPGAHEGKGL-GNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             ceEEEEECCCCCCCccchhhH-HHHHHHHHHHCCEEEEEEeCC
Confidence            457899999985443222221 123455668899999999996

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.91  E-value=1e-08  Score=96.62  Aligned_cols=116  Identities=14%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH--HhhhcccCCchHHHHHHhccC-EEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFAD-VVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~qi~~a~-iivlNK  195 (293)
                      ++..+.||||||..+.   .     .........+|.+++|||+......  ......-.++..+...++.+. ++++||
T Consensus        83 ~~~~i~lIDtPGh~~f---~-----~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNK  154 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDF---I-----KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINK  154 (446)
T ss_pred             CCeEEEEEECCChHHH---H-----HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEc
Confidence            4567899999995432   1     2223445678999999999865310  000000011233445566665 589999


Q ss_pred             CCCCC--CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736          196 VDLVS--PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       196 ~D~~~--~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                      +|...  ..+  ..++++.+.++.+.......      .....++++|+++|+|+.+
T Consensus       155 mD~~~~~~~~--~~~~~i~~~i~~~l~~~g~~------~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        155 MDDKTVNYSQ--ERYDEIKKEVSAYLKKVGYN------PEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cccccchhhH--HHHHHHHHHHHHHHHhcCCC------cccceEEEeecccCCCccc
Confidence            99532  111  23455555555432211000      0114578999999999853

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.90  E-value=3.6e-09  Score=92.12  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ...|+++|.+|+|||||+|+|+.
T Consensus        31 ~~~IllvG~tGvGKSSliNaLlg   53 (249)
T cd01853          31 SLTILVLGKTGVGKSSTINSIFG   53 (249)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhC
Confidence            45688899999999999999993

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.90  E-value=2.2e-08  Score=93.61  Aligned_cols=150  Identities=17%  Similarity=0.219  Sum_probs=82.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceee-ccchh
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC-TVKHS  106 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc-~~~~~  106 (293)
                      .+..+++++|.+|+||||++..|...  ..|.+++++..|... ......+-..+          ...+-.+.. ....+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R-~aa~eQL~~la----------~~~gvp~~~~~~~~d  161 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR-PAAYDQLKQLA----------EKIGVPFYGDPDNKD  161 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC-HHHHHHHHHHH----------HHcCCcEEecCCccC
Confidence            34668889999999999999999764  457899999988753 11110000000          000000111 11223


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                      ....+.+.+......|+|||||+|... .....+.+.   .+......+.+++|+|+.........       ...+.+.
T Consensus       162 ~~~i~~~al~~~~~~DvVIIDTAGr~~~d~~lm~El~---~l~~~~~pdevlLVvda~~gq~av~~-------a~~F~~~  231 (437)
T PRK00771        162 AVEIAKEGLEKFKKADVIIVDTAGRHALEEDLIEEMK---EIKEAVKPDEVLLVIDATIGQQAKNQ-------AKAFHEA  231 (437)
T ss_pred             HHHHHHHHHHHhhcCCEEEEECCCcccchHHHHHHHH---HHHHHhcccceeEEEeccccHHHHHH-------HHHHHhc
Confidence            333333333322345999999999544 333333221   12233456789999999775322211       1122221


Q ss_pred             hccCEEEEeCCCCCC
Q 022736          186 AFADVVILNKVDLVS  200 (293)
Q Consensus       186 ~~a~iivlNK~D~~~  200 (293)
                      -..+-+|+||.|...
T Consensus       232 l~i~gvIlTKlD~~a  246 (437)
T PRK00771        232 VGIGGIIITKLDGTA  246 (437)
T ss_pred             CCCCEEEEecccCCC
Confidence            224789999999654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=4.7e-09  Score=97.92  Aligned_cols=165  Identities=19%  Similarity=0.169  Sum_probs=102.9

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..|.|++.++|----|||||+-++-+.      .+...|.|.   ++...-..         .++++.            
T Consensus         2 ~~R~PvVtimGHVDHGKTtLLD~IR~t------~Va~~EaGG---ITQhIGA~---------~v~~~~------------   51 (509)
T COG0532           2 ELRPPVVTIMGHVDHGKTTLLDKIRKT------NVAAGEAGG---ITQHIGAY---------QVPLDV------------   51 (509)
T ss_pred             CCCCCEEEEeCcccCCccchhhhHhcC------ccccccCCc---eeeEeeeE---------EEEecc------------
Confidence            358999999999999999999999642      344455542   22111000         000000            


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                               ...+.+.||||||-.-...+-        -+...-.|.+++|||+.....+....     .....+....|
T Consensus        52 ---------~~~~~itFiDTPGHeAFt~mR--------aRGa~vtDIaILVVa~dDGv~pQTiE-----AI~hak~a~vP  109 (509)
T COG0532          52 ---------IKIPGITFIDTPGHEAFTAMR--------ARGASVTDIAILVVAADDGVMPQTIE-----AINHAKAAGVP  109 (509)
T ss_pred             ---------CCCceEEEEcCCcHHHHHHHH--------hcCCccccEEEEEEEccCCcchhHHH-----HHHHHHHCCCC
Confidence                     023568899999954322111        12224468899999998776554321     23344556678


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .++++||+|+.+.+     ..++...+.+..=.+    ..++.  --.++++||++|+|+++|...+.
T Consensus       110 ~iVAiNKiDk~~~n-----p~~v~~el~~~gl~~----E~~gg--~v~~VpvSA~tg~Gi~eLL~~il  166 (509)
T COG0532         110 IVVAINKIDKPEAN-----PDKVKQELQEYGLVP----EEWGG--DVIFVPVSAKTGEGIDELLELIL  166 (509)
T ss_pred             EEEEEecccCCCCC-----HHHHHHHHHHcCCCH----hhcCC--ceEEEEeeccCCCCHHHHHHHHH
Confidence            99999999999653     567776666542111    11221  14578999999999999987663

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.88  E-value=4e-08  Score=83.69  Aligned_cols=103  Identities=15%  Similarity=0.096  Sum_probs=58.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      ..+.++||+|......+...+.        ...+.+++++|..........       ..+...+     ..+.+++.||
T Consensus        58 i~i~~~Dt~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~-------~~~~~~i~~~~~~~~i~lv~nK  122 (215)
T PTZ00132         58 ICFNVWDTAGQEKFGGLRDGYY--------IKGQCAIIMFDVTSRITYKNV-------PNWHRDIVRVCENIPIVLVGNK  122 (215)
T ss_pred             EEEEEEECCCchhhhhhhHHHh--------ccCCEEEEEEECcCHHHHHHH-------HHHHHHHHHhCCCCCEEEEEEC
Confidence            4567999999654433322211        245778999998765443211       1122111     2456788999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.+...   . .......+..+               ..++.+|+++|.|+++...++..
T Consensus       123 ~Dl~~~~~---~-~~~~~~~~~~~---------------~~~~e~Sa~~~~~v~~~f~~ia~  165 (215)
T PTZ00132        123 VDVKDRQV---K-ARQITFHRKKN---------------LQYYDISAKSNYNFEKPFLWLAR  165 (215)
T ss_pred             ccCccccC---C-HHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            99864321   1 11112222111               23578899999999887776654

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.85  E-value=3.6e-08  Score=90.16  Aligned_cols=157  Identities=20%  Similarity=0.198  Sum_probs=85.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEEcCCCCccccchhhhhcC-CCCcchhhhhhccCcceeeccchh
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~---~~~-~~vavv~~d~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      -.+++++|++|+||||++.+|...   ..| .+++++..|.-. .+.-..+-..+ .-++.+          .......+
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R-~ga~EqL~~~a~~~gv~~----------~~~~~~~~  205 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR-IGGHEQLRIFGKILGVPV----------HAVKDGGD  205 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc-ccHHHHHHHHHHHcCCce----------EecCCccc
Confidence            458999999999999999999864   234 589998877642 11111110000 000000          00112234


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                      +...+.++    .+.+++||||+|........ +.+.   .+........+++|+++......+..      ....+...
T Consensus       206 l~~~l~~l----~~~DlVLIDTaG~~~~d~~l~e~La---~L~~~~~~~~~lLVLsAts~~~~l~e------vi~~f~~~  272 (374)
T PRK14722        206 LQLALAEL----RNKHMVLIDTIGMSQRDRTVSDQIA---MLHGADTPVQRLLLLNATSHGDTLNE------VVQAYRSA  272 (374)
T ss_pred             HHHHHHHh----cCCCEEEEcCCCCCcccHHHHHHHH---HHhccCCCCeEEEEecCccChHHHHH------HHHHHHHh
Confidence            54444433    45799999999976533222 2111   12122233356889999876655443      12223322


Q ss_pred             h--------ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736          186 A--------FADVVILNKVDLVSPERSGDSLDELEKEIHEI  218 (293)
Q Consensus       186 ~--------~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l  218 (293)
                      .        ..+-+|+||.|-...      +-.+.+.+...
T Consensus       273 ~~~p~~~~~~~~~~I~TKlDEt~~------~G~~l~~~~~~  307 (374)
T PRK14722        273 AGQPKAALPDLAGCILTKLDEASN------LGGVLDTVIRY  307 (374)
T ss_pred             hcccccccCCCCEEEEeccccCCC------ccHHHHHHHHH
Confidence            1        257899999997653      24555555444

>PTZ00416 elongation factor 2; Provisional

Probab=98.84  E-value=3.6e-09  Score=106.87  Aligned_cols=141  Identities=16%  Similarity=0.148  Sum_probs=76.1

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .++.-|+|+|..++|||||+++|+....    .+-..+.|.+...|....+.       +.-+.+..+++.+........
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g----~i~~~~~g~~~~~D~~~~E~-------~rgiti~~~~~~~~~~~~~~~   85 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAG----IISSKNAGDARFTDTRADEQ-------ERGITIKSTGISLYYEHDLED   85 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcC----CcccccCCceeecccchhhH-------hhcceeeccceEEEeeccccc
Confidence            3566899999999999999999996321    01111223211122221111       111222233332211100000


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                           .....+..+.|+||||..+...        ........+|++|+|+|+..........     +...+.+...+.
T Consensus        86 -----~~~~~~~~i~liDtPG~~~f~~--------~~~~al~~~D~ailVvda~~g~~~~t~~-----~~~~~~~~~~p~  147 (836)
T PTZ00416         86 -----GDDKQPFLINLIDSPGHVDFSS--------EVTAALRVTDGALVVVDCVEGVCVQTET-----VLRQALQERIRP  147 (836)
T ss_pred             -----ccCCCceEEEEEcCCCHHhHHH--------HHHHHHhcCCeEEEEEECCCCcCccHHH-----HHHHHHHcCCCE
Confidence                 0011245688999999876321        2234456789999999998754433221     222333345688


Q ss_pred             EEEEeCCCCC
Q 022736          190 VVILNKVDLV  199 (293)
Q Consensus       190 iivlNK~D~~  199 (293)
                      ++++||+|+.
T Consensus       148 iv~iNK~D~~  157 (836)
T PTZ00416        148 VLFINKVDRA  157 (836)
T ss_pred             EEEEEChhhh
Confidence            9999999987

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.84  E-value=2.4e-08  Score=88.74  Aligned_cols=129  Identities=21%  Similarity=0.275  Sum_probs=71.4

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+...|+++|.+|+||||++|+|+    |.+++.++...+++....                        |.+.      
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIl----G~~v~~vs~f~s~t~~~~------------------------~~~~------   81 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSII----GERIATVSAFQSEGLRPM------------------------MVSR------   81 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCcceeEE------------------------EEEE------
Confidence            346678999999999999999999    666655544333211000                        0000      


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhh--cchhhccccccccEEEE--EcccchHHHHhhhcccCCchHHH-HH
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLW--LDDQLESAVRLDSIITV--VDAKNLLFQIDKYRHLSSYPEAI-HQ  184 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~--~~~~~~~~~~~d~vi~v--vDa~~~~~~~~~~~~~~~~~~~~-~q  184 (293)
                             ...+..+.||||||+.+.....+...  ...++ ....+|.+++|  +|...+.......  +..+...+ ..
T Consensus        82 -------~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l-~~~g~DvVLyV~rLD~~R~~~~Dkql--Lk~Iqe~FG~~  151 (313)
T TIGR00991        82 -------TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL-LGKTIDVLLYVDRLDAYRVDTLDGQV--IRAITDSFGKD  151 (313)
T ss_pred             -------EECCeEEEEEECCCCCchHHHHHHHHHHHHHHh-hcCCCCEEEEEeccCcccCCHHHHHH--HHHHHHHhhhh
Confidence                   01345789999999988643332211  01111 12368889999  4544332211110  00011111 33


Q ss_pred             HhccCEEEEeCCCCCCCC
Q 022736          185 IAFADVVILNKVDLVSPE  202 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~  202 (293)
                      +-...++++|++|..+++
T Consensus       152 iw~~~IVVfTh~d~~~pd  169 (313)
T TIGR00991       152 IWRKSLVVLTHAQFSPPD  169 (313)
T ss_pred             hhccEEEEEECCccCCCC
Confidence            345679999999987543

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.83  E-value=7.1e-08  Score=77.93  Aligned_cols=106  Identities=20%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+-|+|++|..........+        ....+.++++.|..+....... .   .+...+...   ..+.+++.||+|
T Consensus        48 ~~l~i~D~~g~~~~~~~~~~~--------~~~~~~~ii~fd~~~~~S~~~~-~---~~~~~i~~~~~~~~~iivvg~K~D  115 (162)
T PF00071_consen   48 VNLEIWDTSGQERFDSLRDIF--------YRNSDAIIIVFDVTDEESFENL-K---KWLEEIQKYKPEDIPIIVVGNKSD  115 (162)
T ss_dssp             EEEEEEEETTSGGGHHHHHHH--------HTTESEEEEEEETTBHHHHHTH-H---HHHHHHHHHSTTTSEEEEEEETTT
T ss_pred             ccccccccccccccccccccc--------cccccccccccccccccccccc-c---cccccccccccccccceeeecccc
Confidence            457799999965443333222        2467889999998775443221 1   122222211   246788889999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +.+..+  ...++.++..+..+  .             ..+.+|++++.++.++...+
T Consensus       116 ~~~~~~--v~~~~~~~~~~~~~--~-------------~~~e~Sa~~~~~v~~~f~~~  156 (162)
T PF00071_consen  116 LSDERE--VSVEEAQEFAKELG--V-------------PYFEVSAKNGENVKEIFQEL  156 (162)
T ss_dssp             GGGGSS--SCHHHHHHHHHHTT--S-------------EEEEEBTTTTTTHHHHHHHH
T ss_pred             cccccc--chhhHHHHHHHHhC--C-------------EEEEEECCCCCCHHHHHHHH
Confidence            886443  24456666666554  2             35678999999988765433

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.83  E-value=7.4e-08  Score=87.67  Aligned_cols=147  Identities=17%  Similarity=0.150  Sum_probs=84.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcC-CCCcchhhhhhccCcceeeccchh
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      .+..+++++|+.|+||||++..|...  ..+.+++++..|+.. .+.-..+-..+ ..++          ....+....+
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR-~gAveQLk~yae~lgv----------pv~~~~dp~d  272 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR-SGAVEQFQGYADKLDV----------ELIVATSPAE  272 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC-ccHHHHHHHHhhcCCC----------CEEecCCHHH
Confidence            34678999999999999999999763  457899999998753 21111111110 0010          1112234556


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-  184 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-  184 (293)
                      +..++..+.. ..+.|+|||||+|.... ......+  .. +......+.+++|+++..-.....         ..+++ 
T Consensus       273 L~~al~~l~~-~~~~D~VLIDTAGr~~~d~~~l~EL--~~-l~~~~~p~~~~LVLsag~~~~d~~---------~i~~~f  339 (407)
T PRK12726        273 LEEAVQYMTY-VNCVDHILIDTVGRNYLAEESVSEI--SA-YTDVVHPDLTCFTFSSGMKSADVM---------TILPKL  339 (407)
T ss_pred             HHHHHHHHHh-cCCCCEEEEECCCCCccCHHHHHHH--HH-HhhccCCceEEEECCCcccHHHHH---------HHHHhc
Confidence            7666665532 24689999999996432 2222221  11 112234455677887753332221         11111 


Q ss_pred             -HhccCEEEEeCCCCCC
Q 022736          185 -IAFADVVILNKVDLVS  200 (293)
Q Consensus       185 -i~~a~iivlNK~D~~~  200 (293)
                       .-..+-+|+||.|-..
T Consensus       340 ~~l~i~glI~TKLDET~  356 (407)
T PRK12726        340 AEIPIDGFIITKMDETT  356 (407)
T ss_pred             CcCCCCEEEEEcccCCC
Confidence             1235899999999764

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.83  E-value=2.3e-09  Score=83.50  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=90.8

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      +.++|.-+||||||.|.+.+.+       ...|.+-+++.               .+.+++.||+.|             
T Consensus        23 l~lvGLq~sGKtt~Vn~ia~g~-------~~edmiptvGf---------------nmrk~tkgnvti-------------   67 (186)
T KOG0075|consen   23 LSLVGLQNSGKTTLVNVIARGQ-------YLEDMIPTVGF---------------NMRKVTKGNVTI-------------   67 (186)
T ss_pred             EEEEeeccCCcceEEEEEeecc-------chhhhcccccc---------------eeEEeccCceEE-------------
Confidence            4568999999999999887521       01111111111               234455566644             


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh-hcccCCchHHHHHHhccCEEEE
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK-YRHLSSYPEAIHQIAFADVVIL  193 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~-~~~~~~~~~~~~qi~~a~iivl  193 (293)
                               .+.|.+|.-......+-+.        ..++.++++|||.... .+.. ..++......-+-.+.|.+++-
T Consensus        68 ---------klwD~gGq~rfrsmWeryc--------R~v~aivY~VDaad~~-k~~~sr~EL~~LL~k~~l~gip~LVLG  129 (186)
T KOG0075|consen   68 ---------KLWDLGGQPRFRSMWERYC--------RGVSAIVYVVDAADPD-KLEASRSELHDLLDKPSLTGIPLLVLG  129 (186)
T ss_pred             ---------EEEecCCCccHHHHHHHHh--------hcCcEEEEEeecCCcc-cchhhHHHHHHHhcchhhcCCcEEEec
Confidence                     6999999877666665443        4678899999998622 1111 0000000111122356788888


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchh--hcccccCCcchhhhhhhhhhhhc
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSE--VLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~--i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      ||.|+.++-.    ...   .+..++-. .+        .-.+  -|.+|++...+++...+|+.+|.
T Consensus       130 nK~d~~~AL~----~~~---li~rmgL~-si--------tdREvcC~siScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  130 NKIDLPGALS----KIA---LIERMGLS-SI--------TDREVCCFSISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             ccccCccccc----HHH---HHHHhCcc-cc--------ccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence            9999877542    122   23333211 11        1112  26789999999999999998764

>PRK10867 signal recognition particle protein; Provisional

Probab=98.82  E-value=7.2e-08  Score=90.01  Aligned_cols=152  Identities=21%  Similarity=0.227  Sum_probs=80.3

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccch
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKH  105 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~-~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~  105 (293)
                      .+..+++++|++||||||++..|...  .. |.+++++..|.-. ...-..+-.. ...++.+   .  ..+  ......
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R-~aa~eQL~~~a~~~gv~v---~--~~~--~~~dp~  169 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR-PAAIEQLKTLGEQIGVPV---F--PSG--DGQDPV  169 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc-hHHHHHHHHHHhhcCCeE---E--ecC--CCCCHH
Confidence            34568889999999999999888763  34 8899999998643 1111111000 0011100   0  000  000111


Q ss_pred             hHHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          106 SLVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       106 ~l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                      .+........ ...++|++||||+|-.. .......+.   .+......+.+++|+|+.........       ...+.+
T Consensus       170 ~i~~~a~~~a-~~~~~DvVIIDTaGrl~~d~~lm~eL~---~i~~~v~p~evllVlda~~gq~av~~-------a~~F~~  238 (433)
T PRK10867        170 DIAKAALEEA-KENGYDVVIVDTAGRLHIDEELMDELK---AIKAAVNPDEILLVVDAMTGQDAVNT-------AKAFNE  238 (433)
T ss_pred             HHHHHHHHHH-HhcCCCEEEEeCCCCcccCHHHHHHHH---HHHHhhCCCeEEEEEecccHHHHHHH-------HHHHHh
Confidence            2222111112 23578999999999543 333333221   12223456678999999764332221       122222


Q ss_pred             HhccCEEEEeCCCCCC
Q 022736          185 IAFADVVILNKVDLVS  200 (293)
Q Consensus       185 i~~a~iivlNK~D~~~  200 (293)
                      .-..+-+|+||.|...
T Consensus       239 ~~~i~giIlTKlD~~~  254 (433)
T PRK10867        239 ALGLTGVILTKLDGDA  254 (433)
T ss_pred             hCCCCEEEEeCccCcc
Confidence            1234689999999643

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=9.1e-09  Score=95.78  Aligned_cols=166  Identities=20%  Similarity=0.242  Sum_probs=98.8

Q ss_pred             cCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccch
Q 022736           26 ENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH  105 (293)
Q Consensus        26 ~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~  105 (293)
                      ..-..|.||+-|+|---=|||||+.+|-.    .+  |...+.|.   |+..+      |.+   .+.++          
T Consensus       147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRk----s~--VAA~E~GG---ITQhI------GAF---~V~~p----------  198 (683)
T KOG1145|consen  147 KLLEPRPPVVTIMGHVDHGKTTLLDALRK----SS--VAAGEAGG---ITQHI------GAF---TVTLP----------  198 (683)
T ss_pred             hhcCCCCCeEEEeecccCChhhHHHHHhh----Cc--eehhhcCC---cccee------ceE---EEecC----------
Confidence            33457999999999999999999999973    22  33444442   22110      000   01111          


Q ss_pred             hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          106 SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       106 ~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                                   .+-.+.|+||||-+-...+-        -+...-.|.|++||-+.....+....     ........
T Consensus       199 -------------~G~~iTFLDTPGHaAF~aMR--------aRGA~vtDIvVLVVAadDGVmpQT~E-----aIkhAk~A  252 (683)
T KOG1145|consen  199 -------------SGKSITFLDTPGHAAFSAMR--------ARGANVTDIVVLVVAADDGVMPQTLE-----AIKHAKSA  252 (683)
T ss_pred             -------------CCCEEEEecCCcHHHHHHHH--------hccCccccEEEEEEEccCCccHhHHH-----HHHHHHhc
Confidence                         22457899999965433222        12334568899999887665443211     12222333


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      ..|.++.+||+|...+.     .+++.+.|-...   -.++..-|.   -.++++||++|+|++.|.+.+.
T Consensus       253 ~VpiVvAinKiDkp~a~-----pekv~~eL~~~g---i~~E~~GGd---VQvipiSAl~g~nl~~L~eail  312 (683)
T KOG1145|consen  253 NVPIVVAINKIDKPGAN-----PEKVKRELLSQG---IVVEDLGGD---VQVIPISALTGENLDLLEEAIL  312 (683)
T ss_pred             CCCEEEEEeccCCCCCC-----HHHHHHHHHHcC---ccHHHcCCc---eeEEEeecccCCChHHHHHHHH
Confidence            45789999999987543     455555443221   112222222   3468999999999999887653

>PRK13351 elongation factor G; Reviewed

Probab=98.82  E-value=4e-08  Score=97.78  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=45.5

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      .+..+.||||||..+......        .....+|++++|+|+..........     ....+.+...+.++++||+|+
T Consensus        71 ~~~~i~liDtPG~~df~~~~~--------~~l~~aD~~ilVvd~~~~~~~~~~~-----~~~~~~~~~~p~iiviNK~D~  137 (687)
T PRK13351         71 DNHRINLIDTPGHIDFTGEVE--------RSLRVLDGAVVVFDAVTGVQPQTET-----VWRQADRYGIPRLIFINKMDR  137 (687)
T ss_pred             CCEEEEEEECCCcHHHHHHHH--------HHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCCEEEEEECCCC
Confidence            346789999999865433221        2235678999999997653322110     122334456789999999998


Q ss_pred             CCC
Q 022736          199 VSP  201 (293)
Q Consensus       199 ~~~  201 (293)
                      ...
T Consensus       138 ~~~  140 (687)
T PRK13351        138 VGA  140 (687)
T ss_pred             CCC
Confidence            865

>cd01900 YchF YchF subfamily

Probab=98.81  E-value=5.5e-09  Score=91.94  Aligned_cols=101  Identities=21%  Similarity=0.157  Sum_probs=60.1

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++|+|+||||||||+|+|.    +.++ .+.+.+++|+......+.-             +         +.-.+.|..+
T Consensus         1 igivG~PN~GKSTLfn~Lt----~~~~-~~~n~pftTi~p~~g~v~v-------------~---------d~r~~~l~~~   53 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALT----KAGA-EAANYPFCTIEPNVGIVPV-------------P---------DERLDKLAEI   53 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHh----CCCC-ccccccccchhceeeeEEe-------------c---------cchhhhHHHH
Confidence            4789999999999999999    5554 5666677633222111110             0         0001112222


Q ss_pred             Hhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          115 VQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       115 ~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      ...  .-..++.++|+||+.........+. ...+....++|.+++|||+.
T Consensus        54 ~~~~k~~~~~i~lvD~pGl~~~a~~~~glg-~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          54 VKPKKIVPATIEFVDIAGLVKGASKGEGLG-NKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hCCceeeeeEEEEEECCCcCCCCchhhHHH-HHHHHHHHhCCEEEEEEeCc
Confidence            210  1123589999999886544433222 34466667899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=98.80  E-value=5.4e-08  Score=83.43  Aligned_cols=70  Identities=10%  Similarity=0.111  Sum_probs=40.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~  198 (293)
                      ..+.|+||+|......+...        ....+|++++|+|..+..........   +.....+  -..+.++|.||+|+
T Consensus        49 v~L~iwDt~G~e~~~~l~~~--------~~~~~d~illvfdis~~~Sf~~i~~~---w~~~~~~~~~~~piiLVgnK~DL  117 (222)
T cd04173          49 IELNMWDTSGSSYYDNVRPL--------AYPDSDAVLICFDISRPETLDSVLKK---WQGETQEFCPNAKVVLVGCKLDM  117 (222)
T ss_pred             EEEEEEeCCCcHHHHHHhHH--------hccCCCEEEEEEECCCHHHHHHHHHH---HHHHHHhhCCCCCEEEEEECccc
Confidence            45779999997543322211        22578899999999876443221000   1111111  13468899999998


Q ss_pred             CCC
Q 022736          199 VSP  201 (293)
Q Consensus       199 ~~~  201 (293)
                      .+.
T Consensus       118 ~~~  120 (222)
T cd04173         118 RTD  120 (222)
T ss_pred             ccc
Confidence            653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.80  E-value=8.1e-08  Score=87.83  Aligned_cols=151  Identities=22%  Similarity=0.281  Sum_probs=85.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchh-hhhcCCCCcchhhhhhccCcceeeccchh
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERA-MINEGEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~-~~~~~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      .++-+|.++|.-||||||..-+|...  ..++|+.++..|.--...++.- .+.. ..++.   +.....+    ...-+
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~-q~~v~---~f~~~~~----~~Pv~  169 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAE-QVGVP---FFGSGTE----KDPVE  169 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHH-HcCCc---eecCCCC----CCHHH
Confidence            34556778999999999999998763  4799999999986421111110 0000 00000   0000000    00001


Q ss_pred             H-HHHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          107 L-VQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       107 l-~~~l~~l~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                      + ..++...  ....+|++||||+| +.....+.+.+.   .+....+.+-+++|+|+..+.+-...       ...+.+
T Consensus       170 Iak~al~~a--k~~~~DvvIvDTAGRl~ide~Lm~El~---~Ik~~~~P~E~llVvDam~GQdA~~~-------A~aF~e  237 (451)
T COG0541         170 IAKAALEKA--KEEGYDVVIVDTAGRLHIDEELMDELK---EIKEVINPDETLLVVDAMIGQDAVNT-------AKAFNE  237 (451)
T ss_pred             HHHHHHHHH--HHcCCCEEEEeCCCcccccHHHHHHHH---HHHhhcCCCeEEEEEecccchHHHHH-------HHHHhh
Confidence            1 2233322  24568999999999 444455554332   24455678889999999877654332       223322


Q ss_pred             HhccCEEEEeCCCCCC
Q 022736          185 IAFADVVILNKVDLVS  200 (293)
Q Consensus       185 i~~a~iivlNK~D~~~  200 (293)
                      .---.=+|++|.|...
T Consensus       238 ~l~itGvIlTKlDGda  253 (451)
T COG0541         238 ALGITGVILTKLDGDA  253 (451)
T ss_pred             hcCCceEEEEcccCCC
Confidence            2223578899999654

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=2.6e-08  Score=88.02  Aligned_cols=124  Identities=19%  Similarity=0.251  Sum_probs=78.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      ...++.+||+||-+.   +.+++     +....-+|..++|+|+..+.+....     ++.-.-..+-...++|+||+|.
T Consensus        68 e~lq~tlvDCPGHas---LIRti-----iggaqiiDlm~lviDv~kG~QtQtA-----EcLiig~~~c~klvvvinkid~  134 (522)
T KOG0461|consen   68 EQLQFTLVDCPGHAS---LIRTI-----IGGAQIIDLMILVIDVQKGKQTQTA-----ECLIIGELLCKKLVVVINKIDV  134 (522)
T ss_pred             ccceeEEEeCCCcHH---HHHHH-----HhhhheeeeeeEEEehhcccccccc-----hhhhhhhhhccceEEEEecccc
Confidence            457899999999653   33333     3445668899999999876654321     1221222223457899999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc----chhhhhhhhhhhhccCC
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA----THVTRLEGLLEEHQYKS  262 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~----~~~~~l~~~l~~~~~~~  262 (293)
                      ..+.++...++...+++++--....     .  -.-.+++++|+.+|    +++.+|...+++.-..|
T Consensus       135 lpE~qr~ski~k~~kk~~KtLe~t~-----f--~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  135 LPENQRASKIEKSAKKVRKTLESTG-----F--DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHhcC-----c--CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence            8876655566666666654322110     0  12257889999999    77888888887654434

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.79  E-value=1.4e-08  Score=77.93  Aligned_cols=63  Identities=14%  Similarity=0.051  Sum_probs=36.6

Q ss_pred             EEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-----ccCEEEEeCCC
Q 022736          123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-----FADVVILNKVD  197 (293)
Q Consensus       123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-----~a~iivlNK~D  197 (293)
                      +.+.|++|..........        .....|++++|+|.++....... ..   +..++..+.     .|.++|.||.|
T Consensus        52 ~~~~d~~g~~~~~~~~~~--------~~~~~d~~ilv~D~s~~~s~~~~-~~---~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   52 LQFWDFGGQEEFYSQHQF--------FLKKADAVILVYDLSDPESLEYL-SQ---LLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEESSSHCHHCTSHH--------HHHHSCEEEEEEECCGHHHHHHH-HH---HHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEEEecCccceecccccc--------hhhcCcEEEEEEcCCChHHHHHH-HH---HHHHHHHHHccCCCCCEEEEEeccC
Confidence            678999997432211111        13568899999999876532221 00   122333333     67899999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.78  E-value=5.8e-08  Score=93.25  Aligned_cols=70  Identities=17%  Similarity=0.098  Sum_probs=45.1

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      ++.++.|+||||..+....        .......+|++|+|+|+.........     .+.........|.++++||+|+
T Consensus        78 ~~~~inliDTPG~~df~~~--------~~~~l~~aD~aIlVvDa~~gv~~~t~-----~l~~~~~~~~~PiivviNKiD~  144 (527)
T TIGR00503        78 RDCLVNLLDTPGHEDFSED--------TYRTLTAVDNCLMVIDAAKGVETRTR-----KLMEVTRLRDTPIFTFMNKLDR  144 (527)
T ss_pred             CCeEEEEEECCChhhHHHH--------HHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHHHhcCCCEEEEEECccc
Confidence            4567899999998543221        12233568999999999864322211     0223334445789999999998


Q ss_pred             CCC
Q 022736          199 VSP  201 (293)
Q Consensus       199 ~~~  201 (293)
                      ...
T Consensus       145 ~~~  147 (527)
T TIGR00503       145 DIR  147 (527)
T ss_pred             cCC
Confidence            754

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR00959 ffh signal recognition particle protein

Probab=98.77  E-value=1.8e-07  Score=87.26  Aligned_cols=150  Identities=20%  Similarity=0.238  Sum_probs=80.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchh
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      +.-+++++|++|+||||++..|...   ..|.+++++..|.-. ...-..+-.. ...++.+   ..  .+  .......
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R-~~a~~QL~~~a~~~gvp~---~~--~~--~~~~P~~  169 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR-PAAIEQLKVLGQQVGVPV---FA--LG--KGQSPVE  169 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc-hHHHHHHHHHHHhcCCce---Ee--cC--CCCCHHH
Confidence            4558889999999999999888764   358899999998643 1111111000 0011100   00  00  0001112


Q ss_pred             HH-HHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          107 LV-QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       107 l~-~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                      +. +.+...  ...++|+|||||+|... .......+.   .+......+.+++|+|+.........       ...+..
T Consensus       170 i~~~al~~~--~~~~~DvVIIDTaGr~~~d~~l~~eL~---~i~~~~~p~e~lLVvda~tgq~~~~~-------a~~f~~  237 (428)
T TIGR00959       170 IARRALEYA--KENGFDVVIVDTAGRLQIDEELMEELA---AIKEILNPDEILLVVDAMTGQDAVNT-------AKTFNE  237 (428)
T ss_pred             HHHHHHHHH--HhcCCCEEEEeCCCccccCHHHHHHHH---HHHHhhCCceEEEEEeccchHHHHHH-------HHHHHh
Confidence            22 222222  13568999999999543 233332221   12233456788999999764332221       122221


Q ss_pred             HhccCEEEEeCCCCCC
Q 022736          185 IAFADVVILNKVDLVS  200 (293)
Q Consensus       185 i~~a~iivlNK~D~~~  200 (293)
                      .-..+-+|+||.|...
T Consensus       238 ~v~i~giIlTKlD~~~  253 (428)
T TIGR00959       238 RLGLTGVVLTKLDGDA  253 (428)
T ss_pred             hCCCCEEEEeCccCcc
Confidence            1235789999999643

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=1.6e-08  Score=94.24  Aligned_cols=126  Identities=21%  Similarity=0.225  Sum_probs=83.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      +-+-+|||||..+...-        .-....-++++++||||..+.+.....    -+. ..-+.+.+.+.|+||+|+..
T Consensus       125 ylLNLIDTPGHvDFs~E--------VsRslaac~G~lLvVDA~qGvqAQT~a----nf~-lAfe~~L~iIpVlNKIDlp~  191 (650)
T KOG0462|consen  125 YLLNLIDTPGHVDFSGE--------VSRSLAACDGALLVVDASQGVQAQTVA----NFY-LAFEAGLAIIPVLNKIDLPS  191 (650)
T ss_pred             eEEEeecCCCcccccce--------ehehhhhcCceEEEEEcCcCchHHHHH----HHH-HHHHcCCeEEEeeeccCCCC
Confidence            55679999998775311        122335689999999999876543321    011 22334567899999999987


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEE
Q 022736          201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSI  276 (293)
Q Consensus       201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  276 (293)
                      ++     .++++..+.++..           ++.++++.+||++|.|++++.+.+-+.-..| ....+.+++.+.+
T Consensus       192 ad-----pe~V~~q~~~lF~-----------~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP-~~~~d~plr~Lif  250 (650)
T KOG0462|consen  192 AD-----PERVENQLFELFD-----------IPPAEVIYVSAKTGLNVEELLEAIIRRVPPP-KGIRDAPLRMLIF  250 (650)
T ss_pred             CC-----HHHHHHHHHHHhc-----------CCccceEEEEeccCccHHHHHHHHHhhCCCC-CCCCCcchHHHhh
Confidence            64     6888888887764           3456889999999999999887775432222 2233444544433

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.77  E-value=4.6e-07  Score=79.67  Aligned_cols=150  Identities=17%  Similarity=0.226  Sum_probs=85.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      +.+.++++|++|+||||++..+...  ..+.+++++..|... .+.-..+.....       .  +.--...+....++.
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-i~~~~ql~~~~~-------~--~~~~~~~~~~~~~l~  143 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYVK-------T--IGFEVIAVRDEAAMT  143 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHhh-------h--cCceEEecCCHHHHH
Confidence            5689999999999999999998764  346789998887542 111111111100       0  000001112334556


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          109 QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                      ..+..+.. ..++|++||||+|-.. .....+.+.  ..+ .....+.+++|+|++........      ....+.. -.
T Consensus       144 ~~l~~l~~-~~~~D~ViIDt~Gr~~~~~~~l~el~--~~~-~~~~~~~~~LVl~a~~~~~d~~~------~~~~f~~-~~  212 (270)
T PRK06731        144 RALTYFKE-EARVDYILIDTAGKNYRASETVEEMI--ETM-GQVEPDYICLTLSASMKSKDMIE------IITNFKD-IH  212 (270)
T ss_pred             HHHHHHHh-cCCCCEEEEECCCCCcCCHHHHHHHH--HHH-hhhCCCeEEEEEcCccCHHHHHH------HHHHhCC-CC
Confidence            66655532 3578999999999553 233332221  111 22344568999998754433322      1222222 34


Q ss_pred             cCEEEEeCCCCCCC
Q 022736          188 ADVVILNKVDLVSP  201 (293)
Q Consensus       188 a~iivlNK~D~~~~  201 (293)
                      .+-+++||.|-...
T Consensus       213 ~~~~I~TKlDet~~  226 (270)
T PRK06731        213 IDGIVFTKFDETAS  226 (270)
T ss_pred             CCEEEEEeecCCCC
Confidence            68999999997653

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.75  E-value=1.6e-08  Score=92.08  Aligned_cols=103  Identities=21%  Similarity=0.158  Sum_probs=62.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      ..++|+|.||+|||||+|+|.    +.+ +.+.+.+++|+......+.-             .         +.-.+.|.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt----~~~-~~v~nypftTi~p~~G~~~v-------------~---------d~r~~~l~   55 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALT----KAG-AEAANYPFCTIEPNVGVVPV-------------P---------DPRLDKLA   55 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHh----CCC-CeecccccccccceEEEEEe-------------c---------cccchhhH
Confidence            358899999999999999999    555 56777777643322111110             0         00011122


Q ss_pred             HHHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          113 QLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       113 ~l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      .+...  .-..++.++|+||+.......+.+ ....+....++|.+++|||+.
T Consensus        56 ~~~~p~~~~~a~i~lvD~pGL~~~a~~g~gl-g~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         56 EIVKPKKIVPATIEFVDIAGLVKGASKGEGL-GNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HhcCCccccCceEEEEECCCCCCCCChHHHH-HHHHHHHHHhCCEEEEEEeCC
Confidence            22110  012358999999987654433322 244566778999999999984

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.74  E-value=8.5e-08  Score=82.77  Aligned_cols=125  Identities=19%  Similarity=0.272  Sum_probs=70.8

Q ss_pred             ceeEEE-EEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           31 SVGVTV-ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        31 ~~pvi~-i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .-|+.+ ++|..|+||||+||+|.... ...++    +.|....+......                             
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~-~~~v~----~vg~~t~~~~~~~~-----------------------------   82 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGE-VKEVS----KVGVGTDITTRLRL-----------------------------   82 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhcc-Cceee----ecccCCCchhhHHh-----------------------------
Confidence            467765 99999999999999999421 11121    11210111111111                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHHHHhcc
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQIAFA  188 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~qi~~a  188 (293)
                             ..+.-..+|+||||+.+...-.... .+.+..-..++|.|++++|+....-..+...    +.. ........
T Consensus        83 -------~~~~~~l~lwDtPG~gdg~~~D~~~-r~~~~d~l~~~DLvL~l~~~~draL~~d~~f----~~dVi~~~~~~~  150 (296)
T COG3596          83 -------SYDGENLVLWDTPGLGDGKDKDAEH-RQLYRDYLPKLDLVLWLIKADDRALGTDEDF----LRDVIILGLDKR  150 (296)
T ss_pred             -------hccccceEEecCCCcccchhhhHHH-HHHHHHHhhhccEEEEeccCCCccccCCHHH----HHHHHHhccCce
Confidence                   1223457899999998854333211 1223444567889999999976433322210    111 12333467


Q ss_pred             CEEEEeCCCCCCC
Q 022736          189 DVVILNKVDLVSP  201 (293)
Q Consensus       189 ~iivlNK~D~~~~  201 (293)
                      .++++|-+|...+
T Consensus       151 ~i~~VtQ~D~a~p  163 (296)
T COG3596         151 VLFVVTQADRAEP  163 (296)
T ss_pred             eEEEEehhhhhcc
Confidence            7999999997654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.72  E-value=8.2e-07  Score=81.94  Aligned_cols=158  Identities=20%  Similarity=0.241  Sum_probs=88.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc------CCCCeEEEEEcCCCCccccchhhhhcCC-CCcchhhhhhccCcceeec
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG------KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCT  102 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~------~~~~~vavv~~d~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~  102 (293)
                      .+..+++++|+.|+||||.+.+|...      ..+.+++++..|... .+....+-..+. -++.          ..+..
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R-~aa~eQL~~~a~~lgvp----------v~~~~  240 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR-IGAKKQIQTYGDIMGIP----------VKAIE  240 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc-HHHHHHHHHHhhcCCcc----------eEeeC
Confidence            34568999999999999999999753      247899999988743 222111111110 1110          11222


Q ss_pred             cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHH-HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736          103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA  181 (293)
Q Consensus       103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~  181 (293)
                      ...++...+..    ..++|+|||||+|....... ...+  ...+.....-.-+++|+|++.....+.         ..
T Consensus       241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el--~~~l~~~~~~~e~~LVlsat~~~~~~~---------~~  305 (388)
T PRK12723        241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEM--KELLNACGRDAEFHLAVSSTTKTSDVK---------EI  305 (388)
T ss_pred             cHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHH--HHHHHhcCCCCeEEEEEcCCCCHHHHH---------HH
Confidence            23344444433    35789999999996542211 1111  111221111124789999987654433         23


Q ss_pred             HHHHh--ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          182 IHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       182 ~~qi~--~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      +.+..  ..+-+|+||.|-...-      ..+.+.+...+
T Consensus       306 ~~~~~~~~~~~~I~TKlDet~~~------G~~l~~~~~~~  339 (388)
T PRK12723        306 FHQFSPFSYKTVIFTKLDETTCV------GNLISLIYEMR  339 (388)
T ss_pred             HHHhcCCCCCEEEEEeccCCCcc------hHHHHHHHHHC
Confidence            33332  2689999999976432      44555554443

>PRK12740 elongation factor G; Reviewed

Probab=98.72  E-value=9.9e-08  Score=94.73  Aligned_cols=70  Identities=16%  Similarity=0.106  Sum_probs=45.2

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      .+.++.+|||||..+.....        ......+|.+++|+|+..........     ..........+.++++||+|+
T Consensus        58 ~~~~i~liDtPG~~~~~~~~--------~~~l~~aD~vllvvd~~~~~~~~~~~-----~~~~~~~~~~p~iiv~NK~D~  124 (668)
T PRK12740         58 KGHKINLIDTPGHVDFTGEV--------ERALRVLDGAVVVVCAVGGVEPQTET-----VWRQAEKYGVPRIIFVNKMDR  124 (668)
T ss_pred             CCEEEEEEECCCcHHHHHHH--------HHHHHHhCeEEEEEeCCCCcCHHHHH-----HHHHHHHcCCCEEEEEECCCC
Confidence            45789999999986532211        22335689999999998654322110     122233446789999999998


Q ss_pred             CCC
Q 022736          199 VSP  201 (293)
Q Consensus       199 ~~~  201 (293)
                      ...
T Consensus       125 ~~~  127 (668)
T PRK12740        125 AGA  127 (668)
T ss_pred             CCC
Confidence            764

>PTZ00258 GTP-binding protein; Provisional

Probab=98.71  E-value=2.4e-08  Score=91.77  Aligned_cols=103  Identities=22%  Similarity=0.091  Sum_probs=62.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .-++|+|.||+|||||+|+|.    +.+ +.+.+.+++|.......+.                      ..+.-.+.|.
T Consensus        22 ~kvgIVG~PNvGKSTLfnaLt----~~~-~~v~n~pftTi~p~~g~v~----------------------~~d~r~~~l~   74 (390)
T PTZ00258         22 LKMGIVGLPNVGKSTTFNALC----KQQ-VPAENFPFCTIDPNTARVN----------------------VPDERFDWLC   74 (390)
T ss_pred             cEEEEECCCCCChHHHHHHHh----cCc-ccccCCCCCcccceEEEEe----------------------cccchhhHHH
Confidence            358889999999999999998    444 3667777764322211111                      0111112222


Q ss_pred             HHHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          113 QLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       113 ~l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      .+...  .-+.++.++||||+.........+ ....+....++|.+++|||+.
T Consensus        75 ~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gL-g~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         75 KHFKPKSIVPAQLDITDIAGLVKGASEGEGL-GNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             HHcCCcccCCCCeEEEECCCcCcCCcchhHH-HHHHHHHHHHCCEEEEEEeCC
Confidence            22211  123468999999987654433222 234466678899999999983

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.70  E-value=4.3e-07  Score=89.63  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=87.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~---~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      -.+++++|+.|+||||++.+|...   ..| ++++++..|..- ++.-..+-..+       +...++  ...+....++
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R-igA~eQL~~~a-------~~~gvp--v~~~~~~~~l  254 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR-IGALEQLRIYG-------RILGVP--VHAVKDAADL  254 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc-hHHHHHHHHHH-------HhCCCC--ccccCCHHHH
Confidence            359999999999999999999863   234 589998887542 22211111100       000000  0111223445


Q ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       108 ~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                      ..++..+    .+.|+|||||+|... ...+.+.+.   .+......+-+++|+|+......+..      ....+....
T Consensus       255 ~~al~~~----~~~D~VLIDTAGRs~~d~~l~eel~---~l~~~~~p~e~~LVLsAt~~~~~l~~------i~~~f~~~~  321 (767)
T PRK14723        255 RFALAAL----GDKHLVLIDTVGMSQRDRNVSEQIA---MLCGVGRPVRRLLLLNAASHGDTLNE------VVHAYRHGA  321 (767)
T ss_pred             HHHHHHh----cCCCEEEEeCCCCCccCHHHHHHHH---HHhccCCCCeEEEEECCCCcHHHHHH------HHHHHhhcc
Confidence            5555543    467999999999554 233333221   11122334467999999864443322      122233221


Q ss_pred             --ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       187 --~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                        ..+-+|+||.|-...-      -.+.+.+...+
T Consensus       322 ~~~i~glIlTKLDEt~~~------G~iL~i~~~~~  350 (767)
T PRK14723        322 GEDVDGCIITKLDEATHL------GPALDTVIRHR  350 (767)
T ss_pred             cCCCCEEEEeccCCCCCc------cHHHHHHHHHC
Confidence              3678999999976533      44555555444

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.70  E-value=1.1e-07  Score=91.41  Aligned_cols=71  Identities=20%  Similarity=0.133  Sum_probs=45.9

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      ++..+.++||||..+.....        ......+|++++|+|+.........     .......+...|.++++||+|+
T Consensus        77 ~~~~inliDTPG~~df~~~~--------~~~l~~aD~aIlVvDa~~gv~~~t~-----~l~~~~~~~~iPiiv~iNK~D~  143 (526)
T PRK00741         77 RDCLINLLDTPGHEDFSEDT--------YRTLTAVDSALMVIDAAKGVEPQTR-----KLMEVCRLRDTPIFTFINKLDR  143 (526)
T ss_pred             CCEEEEEEECCCchhhHHHH--------HHHHHHCCEEEEEEecCCCCCHHHH-----HHHHHHHhcCCCEEEEEECCcc
Confidence            35668999999976543222        1223468999999999764322211     1223344456789999999998


Q ss_pred             CCCC
Q 022736          199 VSPE  202 (293)
Q Consensus       199 ~~~~  202 (293)
                      ....
T Consensus       144 ~~a~  147 (526)
T PRK00741        144 DGRE  147 (526)
T ss_pred             cccC
Confidence            7654

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=1.2e-07  Score=77.47  Aligned_cols=157  Identities=20%  Similarity=0.195  Sum_probs=91.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      -=++++|-.++||||||++++...       ..+..++++|+|...-           .+.+.                 
T Consensus        23 ~KlVflGdqsVGKTslItRf~yd~-------fd~~YqATIGiDFlsk-----------t~~l~-----------------   67 (221)
T KOG0094|consen   23 YKLVFLGDQSVGKTSLITRFMYDK-------FDNTYQATIGIDFLSK-----------TMYLE-----------------   67 (221)
T ss_pred             EEEEEEccCccchHHHHHHHHHhh-------hcccccceeeeEEEEE-----------EEEEc-----------------
Confidence            346679999999999999999642       2233444455553210           00110                 


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc----
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA----  188 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a----  188 (293)
                           ...+.+-++||+|.-....+.....        ....++|.|.|-++.......    .++.+-+..-..+    
T Consensus        68 -----d~~vrLQlWDTAGQERFrslipsY~--------Rds~vaviVyDit~~~Sfe~t----~kWi~dv~~e~gs~~vi  130 (221)
T KOG0094|consen   68 -----DRTVRLQLWDTAGQERFRSLIPSYI--------RDSSVAVIVYDITDRNSFENT----SKWIEDVRRERGSDDVI  130 (221)
T ss_pred             -----CcEEEEEEEecccHHHHhhhhhhhc--------cCCeEEEEEEeccccchHHHH----HHHHHHHHhccCCCceE
Confidence                 1234567999999877666554433        345567777887654332211    0012212221223    


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .++|-||.||++..+  ...++-...-+++|               ...+.+||++|.|+.++-..+.+.
T Consensus       131 I~LVGnKtDL~dkrq--vs~eEg~~kAkel~---------------a~f~etsak~g~NVk~lFrrIaa~  183 (221)
T KOG0094|consen  131 IFLVGNKTDLSDKRQ--VSIEEGERKAKELN---------------AEFIETSAKAGENVKQLFRRIAAA  183 (221)
T ss_pred             EEEEcccccccchhh--hhHHHHHHHHHHhC---------------cEEEEecccCCCCHHHHHHHHHHh
Confidence            245559999998754  34445455555554               245678999999998877666543

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.69  E-value=6.4e-07  Score=82.80  Aligned_cols=157  Identities=13%  Similarity=0.106  Sum_probs=85.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchhH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      ..+++++|++||||||++.+|...   ..|.+++++..|..- .+....+-.. ...++..          .  . ..++
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R-~aA~eQLk~yAe~lgvp~----------~--~-~~~~  288 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR-IAAIEQLKRYADTMGMPF----------Y--P-VKDI  288 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh-hhHHHHHHHHHHhcCCCe----------e--e-hHHH
Confidence            457889999999999999999853   457899999988743 1111111110 0001000          0  0 0112


Q ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccc--cccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       108 ~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~--~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                      ..... .+. ..++|+|||||+|... .....+.+  ...+...  ..-.-+++|+|+......+..      ....+ +
T Consensus       289 ~~l~~-~l~-~~~~D~VLIDTaGr~~rd~~~l~eL--~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~------~~~~f-~  357 (432)
T PRK12724        289 KKFKE-TLA-RDGSELILIDTAGYSHRNLEQLERM--QSFYSCFGEKDSVENLLVLSSTSSYHHTLT------VLKAY-E  357 (432)
T ss_pred             HHHHH-HHH-hCCCCEEEEeCCCCCccCHHHHHHH--HHHHHhhcCCCCCeEEEEEeCCCCHHHHHH------HHHHh-c
Confidence            22222 222 3678999999999753 23333222  1111111  112247889999876654432      12222 2


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      .-..+-+|+||.|-...-      ..+.+.....+
T Consensus       358 ~~~~~glIlTKLDEt~~~------G~il~i~~~~~  386 (432)
T PRK12724        358 SLNYRRILLTKLDEADFL------GSFLELADTYS  386 (432)
T ss_pred             CCCCCEEEEEcccCCCCc------cHHHHHHHHHC
Confidence            224689999999976432      44555554443

>cd01873 RhoBTB RhoBTB subfamily

Probab=98.66  E-value=3.2e-07  Score=77.09  Aligned_cols=107  Identities=10%  Similarity=-0.012  Sum_probs=60.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||+|..+.  +..        .....++++++|.|..+....... ..  .+...+.+.  ..+.++|.||+|+
T Consensus        66 v~l~iwDTaG~~~~--~~~--------~~~~~ad~iilv~d~t~~~Sf~~~-~~--~w~~~i~~~~~~~piilvgNK~DL  132 (195)
T cd01873          66 VSLRLWDTFGDHDK--DRR--------FAYGRSDVVLLCFSIASPNSLRNV-KT--MWYPEIRHFCPRVPVILVGCKLDL  132 (195)
T ss_pred             EEEEEEeCCCChhh--hhc--------ccCCCCCEEEEEEECCChhHHHHH-HH--HHHHHHHHhCCCCCEEEEEEchhc
Confidence            45789999997531  110        122468889999998765432111 00  011122221  3467999999998


Q ss_pred             CCCC-----------------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          199 VSPE-----------------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       199 ~~~~-----------------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      ....                 .+....++.++..+.++               ...+.+||++|+|++++-..+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~---------------~~~~E~SAkt~~~V~e~F~~~  191 (195)
T cd01873         133 RYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG---------------IPYYETSVVTQFGVKDVFDNA  191 (195)
T ss_pred             cccccchhhhcccccccccccCCccCHHHHHHHHHHhC---------------CEEEEcCCCCCCCHHHHHHHH
Confidence            6421                 01112233333333222               146789999999998876554

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.65  E-value=4.8e-07  Score=84.75  Aligned_cols=158  Identities=22%  Similarity=0.251  Sum_probs=84.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .+++|+|+.|+||||++..|...    ..+.+++++..|+.. .+....+...+       ....+  ....+....++.
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r-~~a~eqL~~~a-------~~~~v--p~~~~~~~~~l~  291 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR-IGAVEQLKTYA-------KIMGI--PVEVVYDPKELA  291 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH-HHHHHHHHHHH-------HHhCC--ceEccCCHHhHH
Confidence            58999999999999999998653    346899999988742 11111111100       00000  001112233455


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                      ..+..+    .++|+|||||+|..... .....+  ...+.....-..+.+|+++......+..      +...+..+. 
T Consensus       292 ~~l~~~----~~~DlVlIDt~G~~~~d~~~~~~L--~~ll~~~~~~~~~~LVl~a~~~~~~l~~------~~~~f~~~~-  358 (424)
T PRK05703        292 KALEQL----RDCDVILIDTAGRSQRDKRLIEEL--KALIEFSGEPIDVYLVLSATTKYEDLKD------IYKHFSRLP-  358 (424)
T ss_pred             HHHHHh----CCCCEEEEeCCCCCCCCHHHHHHH--HHHHhccCCCCeEEEEEECCCCHHHHHH------HHHHhCCCC-
Confidence            555433    46899999999965432 111111  1112211122356788888755444332      122222222 


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      .+-+|+||.|-...      ...+.+.+...+
T Consensus       359 ~~~vI~TKlDet~~------~G~i~~~~~~~~  384 (424)
T PRK05703        359 LDGLIFTKLDETSS------LGSILSLLIESG  384 (424)
T ss_pred             CCEEEEeccccccc------ccHHHHHHHHHC
Confidence            46899999997543      245555555543

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.65  E-value=9e-08  Score=90.29  Aligned_cols=117  Identities=14%  Similarity=0.177  Sum_probs=59.7

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH--HhhhcccCCchHHHHHHhcc-CEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFA-DVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~qi~~a-~iivlNK  195 (293)
                      .+..+.||||||..+....        .......+|..|+|||+......  ........++......++.+ .++++||
T Consensus        83 ~~~~i~liDtPGh~df~~~--------~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK  154 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKN--------MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK  154 (447)
T ss_pred             CCEEEEEEECCCHHHHHHH--------HHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc
Confidence            3456889999996443221        23344678999999999863110  00000000122233445665 4778999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT  249 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~  249 (293)
                      +|+.+.......+.++.+.++.+....-.     . ..-..++++|+++|+|+.
T Consensus       155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~-----~-~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        155 MDATTPKYSKARYDEIVKEVSSYLKKVGY-----N-PDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             ccCCchhhhHHHHHHHHHHHHHHHHHcCC-----C-cccceEEEEecccccccc
Confidence            99873211001223333333322111000     0 001357899999999874

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=98.64  E-value=2.5e-08  Score=80.61  Aligned_cols=91  Identities=25%  Similarity=0.332  Sum_probs=59.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccc-----hhhhhcCCCCcchhhhhhccCcceeeccchh
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE-----RAMINEGEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d-----~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      |+.|+|+.|||||||+++|++.  ..|.+++++.++.+. ..++     ........     ...+.+.++|.||.....
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~-~~~d~~~~D~~~~~~ag-----a~~v~~~~~~~~~~~~~~   74 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHD-FDIDKNGKDSYRHREAG-----ADQVIVASSRRYAFMHET   74 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc-ccCCCccccHHHHHhCC-----CCEEEEecCCeEEEEEec
Confidence            5789999999999999999985  558899999988654 3333     22232211     234567788888864321


Q ss_pred             -HHHHHHHHHhhcCCCCEEEEecCC
Q 022736          107 -LVQALEQLVQRKERLDHILLETTG  130 (293)
Q Consensus       107 -l~~~l~~l~~~~~~~d~iiidt~G  130 (293)
                       ....+..++......|++|||.-+
T Consensus        75 ~~~~~l~~ll~~~~~~D~vlVEG~k   99 (155)
T TIGR00176        75 QEERDLEALLDRLPDLDIILVEGFK   99 (155)
T ss_pred             CCCcCHHHHHhhCCCCCEEEECCCC
Confidence             122333444333458999999865

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=2.8e-07  Score=82.86  Aligned_cols=148  Identities=22%  Similarity=0.262  Sum_probs=84.8

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec--cc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VK  104 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~~  104 (293)
                      ..+..||.++|..|+||||.+-+|...  ..|.|++.+-.|.=-.-..|.-.......++.           +.-+  --
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP-----------~ygsyte~  166 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVP-----------FYGSYTEA  166 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCe-----------eEeccccc
Confidence            446778999999999999999999874  56899998887631101122211111000000           0000  00


Q ss_pred             hh---HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736          105 HS---LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE  180 (293)
Q Consensus       105 ~~---l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~  180 (293)
                      +-   ..+.+.+.  +..++|+||+||+|-+. ...+.+...   ........|.||+|+|++........       ..
T Consensus       167 dpv~ia~egv~~f--Kke~fdvIIvDTSGRh~qe~sLfeEM~---~v~~ai~Pd~vi~VmDasiGQaae~Q-------a~  234 (483)
T KOG0780|consen  167 DPVKIASEGVDRF--KKENFDVIIVDTSGRHKQEASLFEEMK---QVSKAIKPDEIIFVMDASIGQAAEAQ-------AR  234 (483)
T ss_pred             chHHHHHHHHHHH--HhcCCcEEEEeCCCchhhhHHHHHHHH---HHHhhcCCCeEEEEEeccccHhHHHH-------HH
Confidence            00   11122222  24689999999999443 333443221   13455678999999999876543322       22


Q ss_pred             HHHHHhccCEEEEeCCCCC
Q 022736          181 AIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       181 ~~~qi~~a~iivlNK~D~~  199 (293)
                      .+.+.---.-++++|.|--
T Consensus       235 aFk~~vdvg~vIlTKlDGh  253 (483)
T KOG0780|consen  235 AFKETVDVGAVILTKLDGH  253 (483)
T ss_pred             HHHHhhccceEEEEecccC
Confidence            3344333457899999954

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.64  E-value=9.8e-07  Score=83.62  Aligned_cols=156  Identities=19%  Similarity=0.270  Sum_probs=84.1

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec--cc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VK  104 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~~  104 (293)
                      +-.+++|+|+.|+||||++.+|...    ..+.+++++..|... .+-...+...+.           .-|+.+..  ..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR-igA~EQLk~ya~-----------iLgv~v~~a~d~  416 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR-VGGREQLHSYGR-----------QLGIAVHEADSA  416 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc-ccHHHHHHHhhc-----------ccCceeEecCcH
Confidence            3578999999999999999999753    225789998877642 211111111000           01111111  12


Q ss_pred             hhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736          105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH  183 (293)
Q Consensus       105 ~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~  183 (293)
                      .++...+.    ...++|+|||||+|........ +.+  . .+..... ...++|+++......+..      ....+.
T Consensus       417 ~~L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL--~-~L~aa~~-~a~lLVLpAtss~~Dl~e------ii~~f~  482 (559)
T PRK12727        417 ESLLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQL--N-WLRAARQ-VTSLLVLPANAHFSDLDE------VVRRFA  482 (559)
T ss_pred             HHHHHHHH----HhccCCEEEecCCCcchhhHHHHHHH--H-HHHHhhc-CCcEEEEECCCChhHHHH------HHHHHH
Confidence            23444343    3356899999999976433221 111  0 1111122 246778888754333332      122233


Q ss_pred             HHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          184 QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       184 qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      .. ...-+|+||.|....      +..+.+.+...+
T Consensus       483 ~~-~~~gvILTKlDEt~~------lG~aLsv~~~~~  511 (559)
T PRK12727        483 HA-KPQGVVLTKLDETGR------FGSALSVVVDHQ  511 (559)
T ss_pred             hh-CCeEEEEecCcCccc------hhHHHHHHHHhC
Confidence            32 568899999997532      355555555443

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.64  E-value=4e-08  Score=99.48  Aligned_cols=166  Identities=13%  Similarity=0.094  Sum_probs=84.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccch--h
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH--S  106 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~--~  106 (293)
                      ..++.-|+|+|..++|||||+++|+....    ++-....|.+...|....+.       +.-+.+..+++.|....  .
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g----~i~~~~~g~~~~~D~~~~E~-------~rgiti~~~~~~~~~~~~~~   84 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAG----IIAQEVAGDVRMTDTRADEA-------ERGITIKSTGISLYYEMTDE   84 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcC----CcccccCCceeeccCcHHHH-------HhCCceecceeEEEeecccc
Confidence            34678899999999999999999996421    01111222211122221111       11112222222221110  0


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                      ......+.. ...++.+-||||||..+...-        .......+|+.|+|||+..........     +........
T Consensus        85 ~~~~~~~~~-~~~~~~inliDtPGh~dF~~e--------~~~al~~~D~ailVvda~~Gv~~~t~~-----~~~~~~~~~  150 (843)
T PLN00116         85 SLKDFKGER-DGNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGER  150 (843)
T ss_pred             ccccccccc-CCCceEEEEECCCCHHHHHHH--------HHHHHhhcCEEEEEEECCCCCcccHHH-----HHHHHHHCC
Confidence            000000000 012345679999997653222        133446789999999998664432211     122333445


Q ss_pred             ccCEEEEeCCCCCCCCC---CcchHHHHHHHHHhhc
Q 022736          187 FADVVILNKVDLVSPER---SGDSLDELEKEIHEIN  219 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~---~~~~~~~~~~~l~~ln  219 (293)
                      .|.++++||+|+.--+-   ..+....+.+.+.++|
T Consensus       151 ~p~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in  186 (843)
T PLN00116        151 IRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENAN  186 (843)
T ss_pred             CCEEEEEECCcccchhhcCCHHHHHHHHHHHHHHHH
Confidence            68899999999872110   0023456666666665

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=2.2e-08  Score=81.22  Aligned_cols=112  Identities=15%  Similarity=0.100  Sum_probs=71.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEE
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVI  192 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iiv  192 (293)
                      .+..+.++|..|.....++.....        ...+.+|+|||+..........      .+....+      ..+.++.
T Consensus        59 kn~~f~vWDvGGq~k~R~lW~~Y~--------~~t~~lIfVvDS~Dr~Ri~eak------~eL~~~l~~~~l~~~~llv~  124 (181)
T KOG0070|consen   59 KNISFTVWDVGGQEKLRPLWKHYF--------QNTQGLIFVVDSSDRERIEEAK------EELHRMLAEPELRNAPLLVF  124 (181)
T ss_pred             cceEEEEEecCCCcccccchhhhc--------cCCcEEEEEEeCCcHHHHHHHH------HHHHHHHcCcccCCceEEEE
Confidence            356788999999866655554332        4577899999998765433221      1122222      2345777


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .||-|+.++-    ...++.+.+....=..          ....+-.++|.+|+|+.+-.+|+.+.
T Consensus       125 aNKqD~~~al----s~~ei~~~L~l~~l~~----------~~w~iq~~~a~~G~GL~egl~wl~~~  176 (181)
T KOG0070|consen  125 ANKQDLPGAL----SAAEITNKLGLHSLRS----------RNWHIQSTCAISGEGLYEGLDWLSNN  176 (181)
T ss_pred             echhhccccC----CHHHHHhHhhhhccCC----------CCcEEeeccccccccHHHHHHHHHHH
Confidence            7999998765    3466666554221110          12456778999999999999998653

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=4.5e-07  Score=75.21  Aligned_cols=153  Identities=17%  Similarity=0.163  Sum_probs=95.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ..--++++|-+|+|||.++-++.....       ...+.+++++|...-           .+++.+.             
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~f-------~~~~~sTiGIDFk~k-----------ti~l~g~-------------   59 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDSF-------NTSFISTIGIDFKIK-----------TIELDGK-------------   59 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhccC-------cCCccceEEEEEEEE-----------EEEeCCe-------------
Confidence            455688899999999999999997521       112222345543221           1222221             


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc---
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~---  187 (293)
                               ....-++||.|......+...+.        ..+.++++|+|-.+-.......    .+...+.+...   
T Consensus        60 ---------~i~lQiWDtaGQerf~ti~~sYy--------rgA~gi~LvyDitne~Sfeni~----~W~~~I~e~a~~~v  118 (207)
T KOG0078|consen   60 ---------KIKLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDITNEKSFENIR----NWIKNIDEHASDDV  118 (207)
T ss_pred             ---------EEEEEEEEcccchhHHHHHHHHH--------hhcCeeEEEEEccchHHHHHHH----HHHHHHHhhCCCCC
Confidence                     12356999999888777775443        5677899999998765443321    13333444332   


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE  252 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~  252 (293)
                      +-++|-||+|+....+  ...++-++..+.+.               -.++.+||+++.|+++.-
T Consensus       119 ~~~LvGNK~D~~~~R~--V~~e~ge~lA~e~G---------------~~F~EtSAk~~~NI~eaF  166 (207)
T KOG0078|consen  119 VKILVGNKCDLEEKRQ--VSKERGEALAREYG---------------IKFFETSAKTNFNIEEAF  166 (207)
T ss_pred             cEEEeecccccccccc--ccHHHHHHHHHHhC---------------CeEEEccccCCCCHHHHH
Confidence            3578889999987433  35566666665542               245779999999987554

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=1.5e-07  Score=76.90  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=63.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE---EEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV---VILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i---ivlNK~D  197 (293)
                      ..+.|+||.|.-.-..+.....        ..++..|.|.|.++.........   .+.++-++.. +++   +|-||+|
T Consensus        54 ikfeIWDTAGQERy~slapMYy--------RgA~AAivvYDit~~~SF~~aK~---WvkeL~~~~~-~~~vialvGNK~D  121 (200)
T KOG0092|consen   54 IKFEIWDTAGQERYHSLAPMYY--------RGANAAIVVYDITDEESFEKAKN---WVKELQRQAS-PNIVIALVGNKAD  121 (200)
T ss_pred             EEEEEEEcCCccccccccccee--------cCCcEEEEEEecccHHHHHHHHH---HHHHHHhhCC-CCeEEEEecchhh
Confidence            4578999999765433332221        45667899999987554332110   0122233433 543   3569999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..++  ..++....-....               ...+.+||+||.|++++-..+.+
T Consensus       122 L~~~R~V--~~~ea~~yAe~~g---------------ll~~ETSAKTg~Nv~~if~~Ia~  164 (200)
T KOG0092|consen  122 LLERREV--EFEEAQAYAESQG---------------LLFFETSAKTGENVNEIFQAIAE  164 (200)
T ss_pred             hhhcccc--cHHHHHHHHHhcC---------------CEEEEEecccccCHHHHHHHHHH
Confidence            9874432  3444443333211               23577999999999988766654

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.61  E-value=4.6e-08  Score=83.25  Aligned_cols=116  Identities=19%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCC--CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~--~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      -+++.|..|||||||++++.+...  +....+.+..++......                                    
T Consensus         7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~------------------------------------   50 (219)
T COG1100           7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY------------------------------------   50 (219)
T ss_pred             EEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC------------------------------------
Confidence            467799999999999999997532  233344444443210000                                    


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hcc
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFA  188 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a  188 (293)
                            ....+..++||+|..+...+.....        ...++++.++|............   .+...+...   ..+
T Consensus        51 ------~~~~~~~~~Dt~gq~~~~~~~~~y~--------~~~~~~l~~~d~~~~~~~~~~~~---~~~~~l~~~~~~~~~  113 (219)
T COG1100          51 ------RRNIKLQLWDTAGQEEYRSLRPEYY--------RGANGILIVYDSTLRESSDELTE---EWLEELRELAPDDVP  113 (219)
T ss_pred             ------CCEEEEEeecCCCHHHHHHHHHHHh--------cCCCEEEEEEecccchhhhHHHH---HHHHHHHHhCCCCce
Confidence                  0134578999999776555553322        45677888888875332222110   012222222   357


Q ss_pred             CEEEEeCCCCCCCC
Q 022736          189 DVVILNKVDLVSPE  202 (293)
Q Consensus       189 ~iivlNK~D~~~~~  202 (293)
                      .+++.||+|+....
T Consensus       114 iilv~nK~Dl~~~~  127 (219)
T COG1100         114 ILLVGNKIDLFDEQ  127 (219)
T ss_pred             EEEEecccccccch
Confidence            88999999998764

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.61  E-value=1.6e-07  Score=85.81  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=72.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEE-----------EEEcCCCCccccc-hhhhhcCCCCcchhhhhhccCcceee
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIA-----------VILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICC  101 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~va-----------vv~~d~g~~~~~d-~~~~~~~~~~~~~~~~~~l~~gcicc  101 (293)
                      -++++|+-++|||||+|++...---..++           +.+.-.|.++..+ ..++-.        +.+++..     
T Consensus        19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~--------kAvEI~~-----   85 (492)
T TIGR02836        19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPN--------EAVEINI-----   85 (492)
T ss_pred             EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccC--------cceEEec-----
Confidence            47899999999999999999431111455           5555556322111 111110        1112110     


Q ss_pred             ccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhh------------------------hcchhhccccccccEE
Q 022736          102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL------------------------WLDDQLESAVRLDSII  157 (293)
Q Consensus       102 ~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~------------------------~~~~~~~~~~~~d~vi  157 (293)
                                    ...-...+.+|||+|+.....+....                        .....+.  .+.+..+
T Consensus        86 --------------~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~--dhstIgi  149 (492)
T TIGR02836        86 --------------NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ--EHSTIGV  149 (492)
T ss_pred             --------------cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH--hcCcEEE
Confidence                          00123678999999987655443211                        1111111  1456667


Q ss_pred             EEE-ccc-------chHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          158 TVV-DAK-------NLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       158 ~vv-Da~-------~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +|. |++       ++.....      .+...+.++..|.++|+||+|-.
T Consensus       150 vVtTDgsi~dI~Re~y~~aEe------~~i~eLk~~~kPfiivlN~~dp~  193 (492)
T TIGR02836       150 VVTTDGTITDIPREDYVEAEE------RVIEELKELNKPFIILLNSTHPY  193 (492)
T ss_pred             EEEcCCCccccccccchHHHH------HHHHHHHhcCCCEEEEEECcCCC
Confidence            777 884       2221111      13456788899999999999944

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01858 NGP_1 NGP-1

Probab=98.60  E-value=5.5e-08  Score=78.77  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=28.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~   70 (293)
                      .++++|++|+|||||+|+|+    +.+.+.+...+|+
T Consensus       104 ~v~~~G~~nvGKStliN~l~----~~~~~~~~~~~g~  136 (157)
T cd01858         104 SVGFIGYPNVGKSSIINTLR----SKKVCKVAPIPGE  136 (157)
T ss_pred             EEEEEeCCCCChHHHHHHHh----cCCceeeCCCCCe
Confidence            45689999999999999999    6666777777876

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.60  E-value=1.5e-07  Score=86.58  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=80.9

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVD  197 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D  197 (293)
                      .+.+-+|||||..+..-        ..-++..-+.+.++||||+.+......       ....-.++  .-.+-|+||+|
T Consensus        75 ~Y~lnlIDTPGHVDFsY--------EVSRSLAACEGalLvVDAsQGveAQTl-------AN~YlAle~~LeIiPViNKID  139 (603)
T COG0481          75 TYVLNLIDTPGHVDFSY--------EVSRSLAACEGALLVVDASQGVEAQTL-------ANVYLALENNLEIIPVLNKID  139 (603)
T ss_pred             EEEEEEcCCCCccceEE--------EehhhHhhCCCcEEEEECccchHHHHH-------HHHHHHHHcCcEEEEeeeccc
Confidence            35567899999776420        011233456788999999977543221       11111222  23688999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEe
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSIC  277 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  277 (293)
                      +..++     .++++..+..+-.           ++..+.+.+||++|.|++++.+.+-+.-..| ....+.+.+.+.+.
T Consensus       140 LP~Ad-----pervk~eIe~~iG-----------id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P-~g~~~~pLkALifD  202 (603)
T COG0481         140 LPAAD-----PERVKQEIEDIIG-----------IDASDAVLVSAKTGIGIEDVLEAIVEKIPPP-KGDPDAPLKALIFD  202 (603)
T ss_pred             CCCCC-----HHHHHHHHHHHhC-----------CCcchheeEecccCCCHHHHHHHHHhhCCCC-CCCCCCcceEEEEe
Confidence            98764     4677777765542           4567888999999999999888776543323 23445556666654


Q ss_pred             c
Q 022736          278 E  278 (293)
Q Consensus       278 ~  278 (293)
                      +
T Consensus       203 S  203 (603)
T COG0481         203 S  203 (603)
T ss_pred             c
Confidence            3

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=2.8e-08  Score=77.23  Aligned_cols=115  Identities=14%  Similarity=0.102  Sum_probs=70.9

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH--HHHhc-cCEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQIAF-ADVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~qi~~-a~iivlNK  195 (293)
                      .+..+-+.|..|...-.++++-..        ...+.+|+|||+.+..........   +..++  ..+.. ..+++.||
T Consensus        60 KNLk~~vwdLggqtSirPyWRcYy--------~dt~avIyVVDssd~dris~a~~e---l~~mL~E~eLq~a~llv~anK  128 (182)
T KOG0072|consen   60 KNLKFQVWDLGGQTSIRPYWRCYY--------ADTDAVIYVVDSSDRDRISIAGVE---LYSMLQEEELQHAKLLVFANK  128 (182)
T ss_pred             ccccceeeEccCcccccHHHHHHh--------cccceEEEEEeccchhhhhhhHHH---HHHHhccHhhcCceEEEEecc
Confidence            456678999999887777775443        467889999999876543222111   11122  22333 35677799


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .|......    ..++...|.--+-+-++          ..|+..||.+|+|++...+|++.+
T Consensus       129 qD~~~~~t----~~E~~~~L~l~~Lk~r~----------~~Iv~tSA~kg~Gld~~~DWL~~~  177 (182)
T KOG0072|consen  129 QDYSGALT----RSEVLKMLGLQKLKDRI----------WQIVKTSAVKGEGLDPAMDWLQRP  177 (182)
T ss_pred             ccchhhhh----HHHHHHHhChHHHhhhe----------eEEEeeccccccCCcHHHHHHHHH
Confidence            99765432    23333333211111111          457889999999999999999865

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.56  E-value=3.3e-07  Score=78.05  Aligned_cols=82  Identities=10%  Similarity=0.087  Sum_probs=42.0

Q ss_pred             CCCCEEEEecCCCCCcHH----HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HHHhccCEEEE
Q 022736          119 ERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIAFADVVIL  193 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~----~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~qi~~a~iivl  193 (293)
                      .+..+.||||||+.++..    +...+. +........++++++|+....+.........  .+...+ ..+-.-.+||+
T Consensus        47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~-~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~--~l~~~FG~~~~k~~ivvf  123 (212)
T PF04548_consen   47 DGRQVTVIDTPGLFDSDGSDEEIIREIK-RCLSLCSPGPHAFLLVIPLGRFTEEDREVLE--LLQEIFGEEIWKHTIVVF  123 (212)
T ss_dssp             TTEEEEEEE--SSEETTEEHHHHHHHHH-HHHHHTTT-ESEEEEEEETTB-SHHHHHHHH--HHHHHHCGGGGGGEEEEE
T ss_pred             cceEEEEEeCCCCCCCcccHHHHHHHHH-HHHHhccCCCeEEEEEEecCcchHHHHHHHH--HHHHHccHHHHhHhhHHh
Confidence            456789999999877532    222211 1111223467889999998866433222100  011111 22334578888


Q ss_pred             eCCCCCCCCC
Q 022736          194 NKVDLVSPER  203 (293)
Q Consensus       194 NK~D~~~~~~  203 (293)
                      +..|......
T Consensus       124 T~~d~~~~~~  133 (212)
T PF04548_consen  124 THADELEDDS  133 (212)
T ss_dssp             EEGGGGTTTT
T ss_pred             hhcccccccc
Confidence            9999877653

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=98.56  E-value=1.5e-07  Score=76.19  Aligned_cols=150  Identities=23%  Similarity=0.230  Sum_probs=85.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCC-ccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~-~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      -|++.|-+|+|||+|+|++.... ..+--+.|..||-+ ++.+|..                                  
T Consensus        11 KViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~----------------------------------   56 (210)
T KOG0394|consen   11 KVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDR----------------------------------   56 (210)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCe----------------------------------
Confidence            36779999999999999998642 12223444445432 1122211                                  


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHH--HHhhhcccCCchHHHHH-----
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQ-----  184 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~q-----  184 (293)
                              ..-..|+||+|......+.-.|        ....|..+++.|..+...  .+++..     .+.+.|     
T Consensus        57 --------~vtlQiWDTAGQERFqsLg~aF--------YRgaDcCvlvydv~~~~Sfe~L~~Wr-----~EFl~qa~~~~  115 (210)
T KOG0394|consen   57 --------SVTLQIWDTAGQERFQSLGVAF--------YRGADCCVLVYDVNNPKSFENLENWR-----KEFLIQASPQD  115 (210)
T ss_pred             --------EEEEEEEecccHHHhhhcccce--------ecCCceEEEEeecCChhhhccHHHHH-----HHHHHhcCCCC
Confidence                    1235699999977655444222        145677788777655432  222211     122222     


Q ss_pred             -HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736          185 -IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE  252 (293)
Q Consensus       185 -i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~  252 (293)
                       -.+|.+|+-||+|+-+.+.+.....+.....+.-. .             -+.|.+||+...|+++.-
T Consensus       116 Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g-n-------------ipyfEtSAK~~~NV~~AF  170 (210)
T KOG0394|consen  116 PETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG-N-------------IPYFETSAKEATNVDEAF  170 (210)
T ss_pred             CCcccEEEEcccccCCCCccceeeHHHHHHHHHhcC-C-------------ceeEEecccccccHHHHH
Confidence             24678999999998764322223334444443211 1             245778999998876443

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.56  E-value=2e-06  Score=81.22  Aligned_cols=159  Identities=18%  Similarity=0.178  Sum_probs=84.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~---~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      -.|++++|+.|+||||++..|...   ..| .+++++..|... .+.-..+-..+       +...  -....+..+.++
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R-igA~EQLr~~A-------eilG--Vpv~~~~~~~Dl  325 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR-IGGHEQLRIYG-------KILG--VPVHAVKDAADL  325 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc-hhHHHHHHHHH-------HHhC--CCeeccCCchhH
Confidence            369999999999999999999863   334 589998888642 22211111100       0000  011112233344


Q ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                      ...+..    ..+.++++|||+|............  ..+.......-.++|+|+......+..      ....+.. ..
T Consensus       326 ~~aL~~----L~d~d~VLIDTaGr~~~d~~~~e~~--~~l~~~~~p~e~~LVLdAt~~~~~l~~------i~~~f~~-~~  392 (484)
T PRK06995        326 RLALSE----LRNKHIVLIDTIGMSQRDRMVSEQI--AMLHGAGAPVKRLLLLNATSHGDTLNE------VVQAYRG-PG  392 (484)
T ss_pred             HHHHHh----ccCCCeEEeCCCCcChhhHHHHHHH--HHHhccCCCCeeEEEEeCCCcHHHHHH------HHHHhcc-CC
Confidence            433332    2457899999999665332211110  011111112236888999865544332      1112222 23


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      .+-+|+||.|-...      ...+.+.+...+
T Consensus       393 ~~g~IlTKlDet~~------~G~~l~i~~~~~  418 (484)
T PRK06995        393 LAGCILTKLDEAAS------LGGALDVVIRYK  418 (484)
T ss_pred             CCEEEEeCCCCccc------chHHHHHHHHHC
Confidence            57889999996543      345555555554

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.54  E-value=2.9e-07  Score=92.16  Aligned_cols=135  Identities=18%  Similarity=0.187  Sum_probs=72.3

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEE-cCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVIL-NEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~-~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .++.-|+++|..++|||||+.+|+....     ++. ...|.+...|....+.       +.-+.+..+.+.+...    
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g-----~i~~~~~g~~~~~D~~~~E~-------~rgiTi~~~~~~~~~~----   81 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAG-----MISEELAGEQLALDFDEEEQ-------ARGITIKAANVSMVHE----   81 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcC-----CcchhhcCcceecCccHHHH-------HhhhhhhccceEEEEE----
Confidence            3677899999999999999999985321     111 1112111122211111       0001111111111000    


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                            . ...+..+.||||||..+.....        ......+|++++|||+..........     ......+...+
T Consensus        82 ------~-~~~~~~i~liDtPG~~df~~~~--------~~~l~~~D~avlVvda~~g~~~~t~~-----~~~~~~~~~~~  141 (731)
T PRK07560         82 ------Y-EGKEYLINLIDTPGHVDFGGDV--------TRAMRAVDGAIVVVDAVEGVMPQTET-----VLRQALRERVK  141 (731)
T ss_pred             ------e-cCCcEEEEEEcCCCccChHHHH--------HHHHHhcCEEEEEEECCCCCCccHHH-----HHHHHHHcCCC
Confidence                  0 0124567899999988743221        23346679999999998654322110     12222333557


Q ss_pred             CEEEEeCCCCCC
Q 022736          189 DVVILNKVDLVS  200 (293)
Q Consensus       189 ~iivlNK~D~~~  200 (293)
                      -++++||+|+..
T Consensus       142 ~iv~iNK~D~~~  153 (731)
T PRK07560        142 PVLFINKVDRLI  153 (731)
T ss_pred             eEEEEECchhhc
Confidence            799999999874

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=2.9e-07  Score=73.37  Aligned_cols=167  Identities=17%  Similarity=0.171  Sum_probs=90.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..=+++.|.-|||||||++.|-    +.+.+..++...-    +.             +...                 
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLK----dDrl~qhvPTlHP----TS-------------E~l~-----------------   60 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLK----DDRLGQHVPTLHP----TS-------------EELS-----------------   60 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHc----cccccccCCCcCC----Ch-------------HHhe-----------------
Confidence            34557889999999999999997    4445554443221    00             0011                 


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccC
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFAD  189 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~  189 (293)
                             -++..+--+|..|-..........+        ..++.++++||+-...........+.... ...++ ..|.
T Consensus        61 -------Ig~m~ftt~DLGGH~qArr~wkdyf--------~~v~~iv~lvda~d~er~~es~~eld~ll-~~e~la~vp~  124 (193)
T KOG0077|consen   61 -------IGGMTFTTFDLGGHLQARRVWKDYF--------PQVDAIVYLVDAYDQERFAESKKELDALL-SDESLATVPF  124 (193)
T ss_pred             -------ecCceEEEEccccHHHHHHHHHHHH--------hhhceeEeeeehhhHHHhHHHHHHHHHHH-hHHHHhcCcc
Confidence                   2456688899999655444443332        56788999999975543322211110011 11222 3577


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCE--EEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAH--VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~--i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +|..||+|...+..    -++++..+.-.|-...  .+........+-++|.+|...+.+..+--.|+
T Consensus       125 lilgnKId~p~a~s----e~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl  188 (193)
T KOG0077|consen  125 LILGNKIDIPYAAS----EDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWL  188 (193)
T ss_pred             eeecccccCCCccc----HHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeeh
Confidence            88889999877642    2455555443332111  01111112234556666665555543333343

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.53  E-value=2.7e-07  Score=88.85  Aligned_cols=125  Identities=18%  Similarity=0.227  Sum_probs=65.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC-CCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .|+++|.+|+||||++|.|+    +.+++.+..- +++ .....  ...                               
T Consensus       120 rIvLVGKTGVGKSSLINSIL----Gekvf~vss~~~~T-Tr~~e--i~~-------------------------------  161 (763)
T TIGR00993       120 NILVLGKSGVGKSATINSIF----GEVKFSTDAFGMGT-TSVQE--IEG-------------------------------  161 (763)
T ss_pred             EEEEECCCCCCHHHHHHHHh----ccccccccCCCCCc-eEEEE--EEE-------------------------------
Confidence            48899999999999999999    5554444321 232 11100  000                               


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcH---HHHHhhh--cchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HHHh
Q 022736          113 QLVQRKERLDHILLETTGLANPA---PLASVLW--LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIA  186 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~---~~~~~~~--~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~qi~  186 (293)
                          ...+..+.||||||+.+..   .....+.  ....+ ....+|.|++|...............+..+...+ ..+-
T Consensus       162 ----~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L-sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw  236 (763)
T TIGR00993       162 ----LVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI-KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW  236 (763)
T ss_pred             ----EECCceEEEEECCCCCccccchHHHHHHHHHHHHHH-hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH
Confidence                0134568999999988752   1111111  01111 1234687887765432222111100000011111 3344


Q ss_pred             ccCEEEEeCCCCCCC
Q 022736          187 FADVVILNKVDLVSP  201 (293)
Q Consensus       187 ~a~iivlNK~D~~~~  201 (293)
                      .-.+||+|..|.+.+
T Consensus       237 k~tIVVFThgD~lpp  251 (763)
T TIGR00993       237 FNAIVTLTHAASAPP  251 (763)
T ss_pred             cCEEEEEeCCccCCC
Confidence            567999999999864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.2e-06  Score=83.71  Aligned_cols=102  Identities=23%  Similarity=0.308  Sum_probs=62.6

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVS  200 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D~~~  200 (293)
                      |+++||.||+.-.......+     ......+|++|+|+.+++-.+.....     +.....+- +|. +|+.||+|...
T Consensus       207 DivliDsPGld~~se~tswi-----d~~cldaDVfVlV~NaEntlt~sek~-----Ff~~vs~~-KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWI-----DSFCLDADVFVLVVNAENTLTLSEKQ-----FFHKVSEE-KPNIFILNNKWDASA  275 (749)
T ss_pred             cceeccCCCCCCchhhhHHH-----HHHhhcCCeEEEEecCccHhHHHHHH-----HHHHhhcc-CCcEEEEechhhhhc
Confidence            79999999976554444322     12336799999999999866554332     22222222 454 66668889876


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC
Q 022736          201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY  243 (293)
Q Consensus       201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~  243 (293)
                      .+.  +..+.+++.++.+.|...-       -..+.++-+|+.
T Consensus       276 se~--ec~e~V~~Qi~eL~v~~~~-------eA~DrvfFVS~~  309 (749)
T KOG0448|consen  276 SEP--ECKEDVLKQIHELSVVTEK-------EAADRVFFVSAK  309 (749)
T ss_pred             ccH--HHHHHHHHHHHhcCcccHh-------hhcCeeEEEecc
Confidence            654  3667777777766553210       112457778865

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.51  E-value=2.5e-07  Score=82.00  Aligned_cols=58  Identities=14%  Similarity=0.292  Sum_probs=32.9

Q ss_pred             cccccEEEEEcccc-hHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCCCCCCCCCcchHHHHHHHHH
Q 022736          151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIH  216 (293)
Q Consensus       151 ~~~d~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D~~~~~~~~~~~~~~~~~l~  216 (293)
                      .+++++++++++.. .....+        .+.++++.  ...+-|+.|+|.+..++......++++.|+
T Consensus       112 ~RVH~cLYfI~pt~~~L~~~D--------i~~mk~Ls~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~  172 (281)
T PF00735_consen  112 TRVHACLYFIPPTGHGLKPLD--------IEFMKRLSKRVNVIPVIAKADTLTPEELQAFKQRIREDLE  172 (281)
T ss_dssp             --EEEEEEEE-TTSSSS-HHH--------HHHHHHHTTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEcCCCccchHHH--------HHHHHHhcccccEEeEEecccccCHHHHHHHHHHHHHHHH
Confidence            57899999999853 333333        23445554  346899999999987654333334444444

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=98.51  E-value=4e-07  Score=76.91  Aligned_cols=69  Identities=17%  Similarity=0.158  Sum_probs=42.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----------------
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----------------  184 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----------------  184 (293)
                      +.+-|+||+|......+...+.        ..++++|+|.|.++....... .   .+...+.+                
T Consensus        54 ~~l~IwDtaG~e~~~~l~~~~y--------r~ad~iIlVyDvtn~~Sf~~l-~---~W~~ei~~~~~~~~~~~~~~~~~~  121 (202)
T cd04102          54 FFVELWDVGGSESVKSTRAVFY--------NQVNGIILVHDLTNRKSSQNL-Q---RWSLEALNKDTFPTGLLVTNGDYD  121 (202)
T ss_pred             EEEEEEecCCchhHHHHHHHHh--------CcCCEEEEEEECcChHHHHHH-H---HHHHHHHHhhcccccccccccccc
Confidence            4467999999866544443322        467899999998876543221 0   01111111                


Q ss_pred             ------HhccCEEEEeCCCCCCC
Q 022736          185 ------IAFADVVILNKVDLVSP  201 (293)
Q Consensus       185 ------i~~a~iivlNK~D~~~~  201 (293)
                            -..|.++|-||+|+.+.
T Consensus       122 ~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102         122 SEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             ccccCCCCceEEEEEECccchhh
Confidence                  13478999999999754

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.51  E-value=2.9e-06  Score=70.09  Aligned_cols=162  Identities=18%  Similarity=0.176  Sum_probs=84.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchh---hhhhcc-CcceeeccchhHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVE---EWVELA-NGCICCTVKHSLVQ  109 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~---~~~~l~-~gcicc~~~~~l~~  109 (293)
                      +.+..|..|+||||+.-.|....  +++.++-.|++. .+++..+-.....+....   ....+. --|..|.....+..
T Consensus         2 I~v~s~kgG~GKSt~a~nLA~~l--~~vlliD~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (179)
T cd03110           2 IAVISGKGGTGKTTVTAALAALL--KNVVLADCDVDA-PNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVT   78 (179)
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHH--hCcEEEECCCCC-CchhhhcCCCccccccceecCCceEEchhhhccccchHHHHH
Confidence            56779999999999999987654  789999999764 222211100000000000   000000 01111111122333


Q ss_pred             HHHHHH---hhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          110 ALEQLV---QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       110 ~l~~l~---~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                      .+.+.+   ....++|++||||||..... ..         ......|.++.++.++......-     ....+.+.+..
T Consensus        79 ~~~~~~~~~~~~~~~d~viiDtpp~~~~~-~~---------~~l~~aD~vliv~~~~~~~~~~~-----~~~~~~l~~~~  143 (179)
T cd03110          79 EVRKHAKEIAKAEGAELIIIDGPPGIGCP-VI---------ASLTGADAALLVTEPTPSGLHDL-----ERAVELVRHFG  143 (179)
T ss_pred             HHHHHHHHhhhhcCCCEEEEECcCCCcHH-HH---------HHHHcCCEEEEEecCCcccHHHH-----HHHHHHHHHcC
Confidence            333332   12367999999999755431 11         11245788899998875421110     01233344445


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI  218 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l  218 (293)
                      .+..+|+||+|.....     ...+++.++..
T Consensus       144 ~~~~vV~N~~~~~~~~-----~~~~~~~~~~~  170 (179)
T cd03110         144 IPVGVVINKYDLNDEI-----AEEIEDYCEEE  170 (179)
T ss_pred             CCEEEEEeCCCCCcch-----HHHHHHHHHHc
Confidence            5668999999865321     24455555543

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.50  E-value=1.3e-07  Score=77.77  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE   71 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~   71 (293)
                      ..++++|.||+|||||+|+|+    +.+.+.+.+.+|.|
T Consensus       118 ~~~~~vG~pnvGKSslin~l~----~~~~~~~~~~pg~T  152 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLK----RSRACNVGATPGVT  152 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHh----CcccceecCCCCeE
Confidence            457899999999999999999    66777788888863

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.49  E-value=5.2e-07  Score=90.14  Aligned_cols=70  Identities=19%  Similarity=0.115  Sum_probs=44.5

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      .+.++.||||||..+.....        ......+|++++|+|+..........     ......+...+-++++||+|.
T Consensus        84 ~~~~i~liDTPG~~~f~~~~--------~~al~~aD~~llVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~  150 (720)
T TIGR00490        84 NEYLINLIDTPGHVDFGGDV--------TRAMRAVDGAIVVVCAVEGVMPQTET-----VLRQALKENVKPVLFINKVDR  150 (720)
T ss_pred             CceEEEEEeCCCccccHHHH--------HHHHHhcCEEEEEEecCCCCCccHHH-----HHHHHHHcCCCEEEEEEChhc
Confidence            45788999999987743222        23346789999999997643221110     111222334577899999998


Q ss_pred             CCC
Q 022736          199 VSP  201 (293)
Q Consensus       199 ~~~  201 (293)
                      ...
T Consensus       151 ~~~  153 (720)
T TIGR00490       151 LIN  153 (720)
T ss_pred             ccc
Confidence            753

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.49  E-value=4.4e-06  Score=77.77  Aligned_cols=156  Identities=17%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceee--ccch
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC--TVKH  105 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc--~~~~  105 (293)
                      -.+++++|+.|+||||++..|...    ....+++++..|.-. ++.-..+-.          .-++. |+-+.  ....
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r-igalEQL~~----------~a~il-Gvp~~~v~~~~  258 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR-IGGHEQLRI----------YGKLL-GVSVRSIKDIA  258 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc-hhHHHHHHH----------HHHHc-CCceecCCCHH
Confidence            468999999999999999998753    123567777665432 211111100          00111 22222  2233


Q ss_pred             hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHH-HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          106 SLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       106 ~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                      ++...+..    ..+.++++|||+|....... .+.+  .. +.......-+++|+|++.....+..      ....+..
T Consensus       259 dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l--~~-l~~~~~~~~~~LVl~at~~~~~~~~------~~~~f~~  325 (420)
T PRK14721        259 DLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQI--AM-LSQCGTQVKHLLLLNATSSGDTLDE------VISAYQG  325 (420)
T ss_pred             HHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHH--HH-HhccCCCceEEEEEcCCCCHHHHHH------HHHHhcC
Confidence            44444433    35689999999997764322 2211  11 1121223357889999865554432      1222222


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                       -..+-+|+||.|-...      ...+.+.+...+
T Consensus       326 -~~~~~~I~TKlDEt~~------~G~~l~~~~~~~  353 (420)
T PRK14721        326 -HGIHGCIITKVDEAAS------LGIALDAVIRRK  353 (420)
T ss_pred             -CCCCEEEEEeeeCCCC------ccHHHHHHHHhC
Confidence             3468899999997653      245555555443

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.49  E-value=4.9e-06  Score=76.10  Aligned_cols=161  Identities=21%  Similarity=0.294  Sum_probs=94.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-eccchh
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHS  106 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~~  106 (293)
                      ..+++++||.|+||||.+.+|...    ...++|++|..|.-- +|.-..+-..          -.+-+-.+| |....+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Y----------a~im~vp~~vv~~~~e  271 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTY----------ADIMGVPLEVVYSPKE  271 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch-hhHHHHHHHH----------HHHhCCceEEecCHHH
Confidence            779999999999999999999753    346799999987531 2222111111          011111222 234557


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCC--CcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLA--NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~--~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                      |..++..+-    +.|+|+|||.|..  ++..+.+.   .........+ -+-+|++++.-...+.         +.+.|
T Consensus       272 l~~ai~~l~----~~d~ILVDTaGrs~~D~~~i~el---~~~~~~~~~i-~~~Lvlsat~K~~dlk---------ei~~~  334 (407)
T COG1419         272 LAEAIEALR----DCDVILVDTAGRSQYDKEKIEEL---KELIDVSHSI-EVYLVLSATTKYEDLK---------EIIKQ  334 (407)
T ss_pred             HHHHHHHhh----cCCEEEEeCCCCCccCHHHHHHH---HHHHhccccc-eEEEEEecCcchHHHH---------HHHHH
Confidence            888877663    4599999999954  34333321   2222333344 3566677765433332         23334


Q ss_pred             Hhc--cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEE
Q 022736          185 IAF--ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR  226 (293)
Q Consensus       185 i~~--a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~  226 (293)
                      ...  -+-+++||.|-..      .+..+.+.+..-+-....+.
T Consensus       335 f~~~~i~~~I~TKlDET~------s~G~~~s~~~e~~~PV~YvT  372 (407)
T COG1419         335 FSLFPIDGLIFTKLDETT------SLGNLFSLMYETRLPVSYVT  372 (407)
T ss_pred             hccCCcceeEEEcccccC------chhHHHHHHHHhCCCeEEEe
Confidence            332  3678999999654      34666777666554444443

>PLN00023 GTP-binding protein; Provisional

Probab=98.47  E-value=7.2e-07  Score=79.89  Aligned_cols=69  Identities=16%  Similarity=0.210  Sum_probs=42.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---------------
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---------------  185 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---------------  185 (293)
                      +.+-|+||+|......+...++        ..++++|+|+|.++.......    ..+...+.+.               
T Consensus        83 v~LqIWDTAGqErfrsL~~~yy--------r~AdgiILVyDITdr~SFenL----~kWl~eI~~~~~~s~p~~s~~~~~~  150 (334)
T PLN00023         83 FFVELWDVSGHERYKDCRSLFY--------SQINGVIFVHDLSQRRTKTSL----QKWASEVAATGTFSAPLGSGGPGGL  150 (334)
T ss_pred             EEEEEEECCCChhhhhhhHHhc--------cCCCEEEEEEeCCCHHHHHHH----HHHHHHHHHhcccccccccccccCC
Confidence            4577999999766554443332        468889999998875433211    1122222222               


Q ss_pred             hccCEEEEeCCCCCCC
Q 022736          186 AFADVVILNKVDLVSP  201 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~  201 (293)
                      ..+.+||.||+|+.+.
T Consensus       151 ~ipIILVGNK~DL~~~  166 (334)
T PLN00023        151 PVPYIVIGNKADIAPK  166 (334)
T ss_pred             CCcEEEEEECcccccc
Confidence            1357889999999764

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.46  E-value=1.2e-06  Score=80.48  Aligned_cols=136  Identities=15%  Similarity=0.198  Sum_probs=76.7

Q ss_pred             cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCC
Q 022736          118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD  197 (293)
Q Consensus       118 ~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D  197 (293)
                      +++..+-||||||.++...-.+-.        ..=+|+|+++|||.....+....     .....-..+..-++|+||+|
T Consensus        65 ~~~~~INIvDTPGHADFGGEVERv--------l~MVDgvlLlVDA~EGpMPQTrF-----VlkKAl~~gL~PIVVvNKiD  131 (603)
T COG1217          65 YNGTRINIVDTPGHADFGGEVERV--------LSMVDGVLLLVDASEGPMPQTRF-----VLKKALALGLKPIVVINKID  131 (603)
T ss_pred             cCCeEEEEecCCCcCCccchhhhh--------hhhcceEEEEEEcccCCCCchhh-----hHHHHHHcCCCcEEEEeCCC
Confidence            356778899999988864333211        23478999999998665443321     12222233567799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc----------hhhhhhhhhhhhccCCCCCCC
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT----------HVTRLEGLLEEHQYKSSQNLH  267 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~----------~~~~l~~~l~~~~~~~~~~~~  267 (293)
                      ..++.- .+..+++..+.-.+...       ...+++. ++-.|+..|.          .+..|.+.+-++-..|. ...
T Consensus       132 rp~Arp-~~Vvd~vfDLf~~L~A~-------deQLdFP-ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~-~~~  201 (603)
T COG1217         132 RPDARP-DEVVDEVFDLFVELGAT-------DEQLDFP-IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK-GDL  201 (603)
T ss_pred             CCCCCH-HHHHHHHHHHHHHhCCC-------hhhCCCc-EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC-CCC
Confidence            877542 24555666665555443       2233433 2333554442          24455555555433332 344


Q ss_pred             CCCEEEEEE
Q 022736          268 DNNVRTLSI  276 (293)
Q Consensus       268 ~~~~~~~~~  276 (293)
                      +.+++....
T Consensus       202 d~PlQ~qvt  210 (603)
T COG1217         202 DEPLQMQVT  210 (603)
T ss_pred             CCCeEEEEE
Confidence            556665444

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=98.46  E-value=3.6e-07  Score=70.88  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=68.1

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      +.|..-+.|-.|...-.+++.++.        ..+|.+|+|+|+..-.........+.+..+-..-.+.|..|..||-|+
T Consensus        60 g~f~LnvwDiGGqr~IRpyWsNYy--------envd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdl  131 (185)
T KOG0074|consen   60 GTFHLNVWDIGGQRGIRPYWSNYY--------ENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDL  131 (185)
T ss_pred             CcEEEEEEecCCccccchhhhhhh--------hccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHH
Confidence            346778999999877777765443        578999999997653322211111111111222234577888899998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+..    .+.+...   +|- +- ++     .....+-.+|+.++++...-.+|++..
T Consensus       132 ltaa~----~eeia~k---lnl-~~-lr-----dRswhIq~csals~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  132 LTAAK----VEEIALK---LNL-AG-LR-----DRSWHIQECSALSLEGSTDGSDWVQSN  177 (185)
T ss_pred             Hhhcc----hHHHHHh---cch-hh-hh-----hceEEeeeCccccccCccCcchhhhcC
Confidence            86542    1222221   110 00 00     012345678899999988888898754

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=1.6e-06  Score=83.43  Aligned_cols=190  Identities=17%  Similarity=0.164  Sum_probs=102.6

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      .-|.||+.|+|---+|||-|+..+-+. -+....+-+..-.|++. ...                        |+++...
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~-fp~------------------------~ni~e~t  526 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATY-FPA------------------------ENIREKT  526 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccc-cch------------------------HHHHHHH
Confidence            458999999999999999999999753 11112222222333210 000                        0111100


Q ss_pred             HHHHHHHHh-hcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          108 VQALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       108 ~~~l~~l~~-~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                      . .+..-.. +..-|.+++|||||.-....+. .       ....-+|..|+|||..++..+...     +....++.-.
T Consensus       527 k-~~~~~~K~~~kvPg~lvIdtpghEsFtnlR-s-------rgsslC~~aIlvvdImhGlepqti-----ESi~lLR~rk  592 (1064)
T KOG1144|consen  527 K-ELKKDAKKRLKVPGLLVIDTPGHESFTNLR-S-------RGSSLCDLAILVVDIMHGLEPQTI-----ESINLLRMRK  592 (1064)
T ss_pred             H-HHHhhhhhhcCCCeeEEecCCCchhhhhhh-h-------ccccccceEEEEeehhccCCcchh-----HHHHHHHhcC
Confidence            0 0111111 1234778999999943222111 1       122346779999999887654332     1344566667


Q ss_pred             ccCEEEEeCCCCCCCCCC--------------cchHHHHHHHHHh----hc---CCCEEEEeecCCCCchhhcccccCCc
Q 022736          187 FADVVILNKVDLVSPERS--------------GDSLDELEKEIHE----IN---SLAHVIRSVRCQVDLSEVLNCRAYDA  245 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~--------------~~~~~~~~~~l~~----ln---p~a~i~~~~~~~~~~~~i~~~sa~~~  245 (293)
                      .+.+|.|||+|.+=....              ......+..++..    ++   =.+.++......-.+--++|+||.+|
T Consensus       593 tpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG  672 (1064)
T KOG1144|consen  593 TPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG  672 (1064)
T ss_pred             CCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC
Confidence            899999999996522110              0111112211111    11   11233322233334556889999999


Q ss_pred             chhhhhhhhhhh
Q 022736          246 THVTRLEGLLEE  257 (293)
Q Consensus       246 ~~~~~l~~~l~~  257 (293)
                      +|+.+|.-||.+
T Consensus       673 eGipdLl~llv~  684 (1064)
T KOG1144|consen  673 EGIPDLLLLLVQ  684 (1064)
T ss_pred             CCcHHHHHHHHH
Confidence            999999877743

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=4.9e-07  Score=82.15  Aligned_cols=121  Identities=15%  Similarity=0.228  Sum_probs=66.1

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHh--hhcccCCchHHHHHHhc-cCEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAF-ADVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~qi~~-a~iivlNK  195 (293)
                      +.+.+-|+|+||.-+.  +      ..+......+|..|+|||+........  ....-.+..-+.+-++. -.++++||
T Consensus        83 ~k~~~tIiDaPGHrdF--v------knmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNK  154 (428)
T COG5256          83 DKYNFTIIDAPGHRDF--V------KNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNK  154 (428)
T ss_pred             CCceEEEeeCCchHHH--H------HHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEc
Confidence            3566899999993321  1      223445577899999999987531111  00111112222233332 35888999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh---hhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT---RLEGLL  255 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~---~l~~~l  255 (293)
                      +|.++-++  ...+++.+.+..+-...-.   .   .+-..++|+|++.|.|+-   +...|.
T Consensus       155 MD~v~wde--~rf~ei~~~v~~l~k~~G~---~---~~~v~FIPiSg~~G~Nl~~~s~~~pWY  209 (428)
T COG5256         155 MDLVSWDE--ERFEEIVSEVSKLLKMVGY---N---PKDVPFIPISGFKGDNLTKKSENMPWY  209 (428)
T ss_pred             ccccccCH--HHHHHHHHHHHHHHHHcCC---C---ccCCeEEecccccCCcccccCcCCcCc
Confidence            99997432  2445555544433211110   0   011347899999999864   344554

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=2.1e-06  Score=69.83  Aligned_cols=146  Identities=21%  Similarity=0.182  Sum_probs=86.3

Q ss_pred             EEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCc-cccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEE-IGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~-~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      +++.|-.|+|||.|+.++.... +...-+.+--|+|.+ +.+|                                     
T Consensus         9 yIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-------------------------------------   51 (216)
T KOG0098|consen    9 YIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-------------------------------------   51 (216)
T ss_pred             EEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-------------------------------------
Confidence            5679999999999999999531 111112223344430 0111                                     


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc---C
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---D  189 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a---~  189 (293)
                           ....++-|+||.|.-...++...+.        ....++++|.|-++.......    ..+.+-++|-..+   .
T Consensus        52 -----~k~IKlqiwDtaGqe~frsv~~syY--------r~a~GalLVydit~r~sF~hL----~~wL~D~rq~~~~NmvI  114 (216)
T KOG0098|consen   52 -----GKQIKLQIWDTAGQESFRSVTRSYY--------RGAAGALLVYDITRRESFNHL----TSWLEDARQHSNENMVI  114 (216)
T ss_pred             -----CceEEEEEEecCCcHHHHHHHHHHh--------ccCcceEEEEEccchhhHHHH----HHHHHHHHHhcCCCcEE
Confidence                 1334577999999877777765543        345577888988765433211    1123333444333   3


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      +++-||+|+....++  ..++-+..-++ +.              -..+.+||++++++++.
T Consensus       115 mLiGNKsDL~~rR~V--s~EEGeaFA~e-hg--------------LifmETSakt~~~VEEa  159 (216)
T KOG0098|consen  115 MLIGNKSDLEARREV--SKEEGEAFARE-HG--------------LIFMETSAKTAENVEEA  159 (216)
T ss_pred             EEEcchhhhhccccc--cHHHHHHHHHH-cC--------------ceeehhhhhhhhhHHHH
Confidence            555699999876543  45565555554 11              12346899999998754

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.41  E-value=2.9e-07  Score=85.17  Aligned_cols=139  Identities=17%  Similarity=0.255  Sum_probs=72.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ...+..+|+|+||+|||||+|.+.+.+..     +.+.+=+    +..++                            +.
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradve-----vqpYaFT----TksL~----------------------------vG  208 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDE-----VQPYAFT----TKLLL----------------------------VG  208 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccc-----cCCcccc----cchhh----------------------------hh
Confidence            34678999999999999999999864321     1111111    11111                            00


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcc--hhhccccccccEEEEEcccchHHHH-hhhcccCCchHHHHH-
Q 022736          110 ALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLD--DQLESAVRLDSIITVVDAKNLLFQI-DKYRHLSSYPEAIHQ-  184 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~--~~~~~~~~~d~vi~vvDa~~~~~~~-~~~~~~~~~~~~~~q-  184 (293)
                      .+.     ..=..+.+|||||+.+ |.+-..++...  .++.+...  .|++++|-+.-..+. .....   ....+.- 
T Consensus       209 H~d-----ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLra--aVLYfmDLSe~CGySva~Qvk---LfhsIKpL  278 (620)
T KOG1490|consen  209 HLD-----YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRS--AVLYFMDLSEMCGYSVAAQVK---LYHSIKPL  278 (620)
T ss_pred             hhh-----hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhh--hheeeeechhhhCCCHHHHHH---HHHHhHHH
Confidence            000     0112357899999766 44333333222  23344333  489999976432211 00000   0111111 


Q ss_pred             -HhccCEEEEeCCCCCCCCCCcchHHHHHHHH
Q 022736          185 -IAFADVVILNKVDLVSPERSGDSLDELEKEI  215 (293)
Q Consensus       185 -i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l  215 (293)
                       ..++.++|+||+|....+.....-.++...+
T Consensus       279 FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~  310 (620)
T KOG1490|consen  279 FANKVTILVLNKIDAMRPEDLDQKNQELLQTI  310 (620)
T ss_pred             hcCCceEEEeecccccCccccCHHHHHHHHHH
Confidence             2457899999999988765433333444333

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.39  E-value=5.4e-06  Score=70.20  Aligned_cols=147  Identities=27%  Similarity=0.398  Sum_probs=85.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCCc----cccch---------hhhhc---C----CCC-----
Q 022736           34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEE----IGVER---------AMINE---G----EGG-----   85 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~~----~~~d~---------~~~~~---~----~~~-----   85 (293)
                      .|+|+|.-|+||||+...|+..   ..+.++.+|-.|+...    .++..         .++..   +    ..+     
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~   81 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKE   81 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccccc
Confidence            5889999999999998885543   3458999999887321    12211         11110   0    000     


Q ss_pred             -cchhh-------------------hhhccCcceeeccchhHHHHHHHHHhhcCCCCEEEEecC-CCCCcHHHHHhhhcc
Q 022736           86 -ALVEE-------------------WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETT-GLANPAPLASVLWLD  144 (293)
Q Consensus        86 -~~~~~-------------------~~~l~~gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~-G~~~~~~~~~~~~~~  144 (293)
                       ..+..                   ..+...||.|... ..+...|+.+.  ....+++++||= |+-+..         
T Consensus        82 ~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~-allR~~l~~l~--~~~~e~VivDtEAGiEHfg---------  149 (255)
T COG3640          82 NPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMN-ALLRRLLRHLI--LNRYEVVIVDTEAGIEHFG---------  149 (255)
T ss_pred             CcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHH-HHHHHHHHHHh--cccCcEEEEecccchhhhc---------
Confidence             00000                   1122578988632 23333444444  356899999995 443321         


Q ss_pred             hhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-ccCEEEEeCCCCC
Q 022736          145 DQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVDLV  199 (293)
Q Consensus       145 ~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a~iivlNK~D~~  199 (293)
                        ......+|.+|.|+|++.-.-....     ...+...+++ ....+|+||.|-.
T Consensus       150 --Rg~~~~vD~vivVvDpS~~sl~tae-----ri~~L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         150 --RGTIEGVDLVIVVVDPSYKSLRTAE-----RIKELAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             --cccccCCCEEEEEeCCcHHHHHHHH-----HHHHHHHHhCCceEEEEEeeccch
Confidence              1223578999999999743221111     1345567777 7889999999854

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.39  E-value=1.4e-06  Score=77.56  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=69.1

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D  197 (293)
                      ..-+|||.||||-.   ++.+     .+......+|..|.+|||..........     ..-....++.. .++.+||+|
T Consensus        84 ~KRkFIiADTPGHe---QYTR-----NMaTGASTadlAIlLVDAR~Gvl~QTrR-----Hs~I~sLLGIrhvvvAVNKmD  150 (431)
T COG2895          84 EKRKFIIADTPGHE---QYTR-----NMATGASTADLAILLVDARKGVLEQTRR-----HSFIASLLGIRHVVVAVNKMD  150 (431)
T ss_pred             ccceEEEecCCcHH---HHhh-----hhhcccccccEEEEEEecchhhHHHhHH-----HHHHHHHhCCcEEEEEEeeec
Confidence            45689999999953   2222     2234446788899999998765443322     23344555543 578899999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh---hhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT---RLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~---~l~~~l~  256 (293)
                      +++-.+  ...+++++....+.....        +.....+|+||+.|.|+.   +..+|.+
T Consensus       151 Lvdy~e--~~F~~I~~dy~~fa~~L~--------~~~~~~IPiSAl~GDNV~~~s~~mpWY~  202 (431)
T COG2895         151 LVDYSE--EVFEAIVADYLAFAAQLG--------LKDVRFIPISALLGDNVVSKSENMPWYK  202 (431)
T ss_pred             ccccCH--HHHHHHHHHHHHHHHHcC--------CCcceEEechhccCCcccccccCCCccc
Confidence            998664  244455443333222111        122467899999998864   3344543

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=1.9e-06  Score=70.67  Aligned_cols=150  Identities=21%  Similarity=0.214  Sum_probs=87.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      .-=++|.|-.|+|||=|+.++....       ......+|+++|...-.-           ++.                
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~-------f~e~~~sTIGVDf~~rt~-----------e~~----------------   54 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDT-------FTESYISTIGVDFKIRTV-----------ELD----------------   54 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCC-------cchhhcceeeeEEEEEEe-----------eec----------------
Confidence            3346779999999999999998631       111222335555332111           111                


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-----
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-----  186 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-----  186 (293)
                            .....+-|+||+|.-....+....        -..+++||+|.|.+.-.....       ...|+..+.     
T Consensus        55 ------gk~iKlQIWDTAGQERFrtit~sy--------YR~ahGii~vyDiT~~~SF~~-------v~~Wi~Ei~~~~~~  113 (205)
T KOG0084|consen   55 ------GKTIKLQIWDTAGQERFRTITSSY--------YRGAHGIIFVYDITKQESFNN-------VKRWIQEIDRYASE  113 (205)
T ss_pred             ------ceEEEEEeeeccccHHHhhhhHhh--------ccCCCeEEEEEEcccHHHhhh-------HHHHHHHhhhhccC
Confidence                  122346799999985544333222        146889999999986433211       233443332     


Q ss_pred             -ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736          187 -FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE  252 (293)
Q Consensus       187 -~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~  252 (293)
                       .+-++|-||+|+.+....  ..++.+.....++              ...++.+||++..++++.-
T Consensus       114 ~v~~lLVGNK~Dl~~~~~v--~~~~a~~fa~~~~--------------~~~f~ETSAK~~~NVe~~F  164 (205)
T KOG0084|consen  114 NVPKLLVGNKCDLTEKRVV--STEEAQEFADELG--------------IPIFLETSAKDSTNVEDAF  164 (205)
T ss_pred             CCCeEEEeeccccHhheec--CHHHHHHHHHhcC--------------CcceeecccCCccCHHHHH
Confidence             256889999999876542  3333333333221              1227789999999887554

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.38  E-value=3.9e-07  Score=82.42  Aligned_cols=35  Identities=37%  Similarity=0.538  Sum_probs=31.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI   72 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~   72 (293)
                      -+.|+|.||+||||+||+|+    +++.+.+++.||.|.
T Consensus       134 ~v~vvG~PNVGKSslIN~L~----~k~~~~~s~~PG~Tk  168 (322)
T COG1161         134 RVGVVGYPNVGKSTLINRLL----GKKVAKTSNRPGTTK  168 (322)
T ss_pred             EEEEEcCCCCcHHHHHHHHh----cccceeeCCCCceec
Confidence            38899999999999999999    888899999999743

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.38  E-value=2.4e-07  Score=79.98  Aligned_cols=124  Identities=16%  Similarity=0.082  Sum_probs=79.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEc-CCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILN-EFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~-d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .+.|-+++.|..|+|||+|+|.+++..   .++-.+. .+|.+..+....                              
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k---~~~~t~k~K~g~Tq~in~f~------------------------------  180 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVK---NIADTSKSKNGKTQAINHFH------------------------------  180 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhh---hhhhhcCCCCccceeeeeee------------------------------
Confidence            456889999999999999999999631   1111111 333311111111                              


Q ss_pred             HHHHHHHhhcCCCCEEEEecCC-----CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736          109 QALEQLVQRKERLDHILLETTG-----LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH  183 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G-----~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~  183 (293)
                                -+-.+.++|.||     +....+....-+...++.+...+-.+++++|++-..+..+..     +.+++.
T Consensus       181 ----------v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-----~i~~~g  245 (320)
T KOG2486|consen  181 ----------VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNP-----EIAWLG  245 (320)
T ss_pred             ----------ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChH-----HHHHHh
Confidence                      123578999999     332222222223344555556666789999998776665543     566777


Q ss_pred             HHhccCEEEEeCCCCCCC
Q 022736          184 QIAFADVVILNKVDLVSP  201 (293)
Q Consensus       184 qi~~a~iivlNK~D~~~~  201 (293)
                      +-.-|-.+|+||||....
T Consensus       246 e~~VP~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  246 ENNVPMTSVFTKCDKQKK  263 (320)
T ss_pred             hcCCCeEEeeehhhhhhh
Confidence            778899999999997643

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=6.9e-06  Score=64.28  Aligned_cols=158  Identities=16%  Similarity=0.135  Sum_probs=95.4

Q ss_pred             cCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchh--hhhcCCCCcchhhhhhccCcce
Q 022736           22 SNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCI   99 (293)
Q Consensus        22 ~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~--~~~~~~~~~~~~~~~~l~~gci   99 (293)
                      ...++++..+. -+.|+|-..+|||+|+.+.+...  -..+.++     +.|+|..  .+.                   
T Consensus        12 ~s~dqnFDymf-KlliiGnssvGKTSfl~ry~ddS--Ft~afvs-----TvGidFKvKTvy-------------------   64 (193)
T KOG0093|consen   12 DSIDQNFDYMF-KLLIIGNSSVGKTSFLFRYADDS--FTSAFVS-----TVGIDFKVKTVY-------------------   64 (193)
T ss_pred             cccccccccee-eEEEEccCCccchhhhHHhhccc--cccceee-----eeeeeEEEeEee-------------------
Confidence            44556666656 45668999999999999998542  1112211     2344421  111                   


Q ss_pred             eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736          100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP  179 (293)
Q Consensus       100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~  179 (293)
                                      +...+.++-|+||+|+..-..+.-.        -....+++|++.|.++-.....       ..
T Consensus        65 ----------------r~~kRiklQiwDTagqEryrtiTTa--------yyRgamgfiLmyDitNeeSf~s-------vq  113 (193)
T KOG0093|consen   65 ----------------RSDKRIKLQIWDTAGQERYRTITTA--------YYRGAMGFILMYDITNEESFNS-------VQ  113 (193)
T ss_pred             ----------------ecccEEEEEEEecccchhhhHHHHH--------HhhccceEEEEEecCCHHHHHH-------HH
Confidence                            1123467789999997654433321        1245778999999987543221       12


Q ss_pred             HHHHHH------hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736          180 EAIHQI------AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG  253 (293)
Q Consensus       180 ~~~~qi------~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~  253 (293)
                      .+.-|+      ..+.++|-||||+-++.-  ...++.+....++.               -+.|..|++..-++.++-.
T Consensus       114 dw~tqIktysw~naqvilvgnKCDmd~eRv--is~e~g~~l~~~LG---------------fefFEtSaK~NinVk~~Fe  176 (193)
T KOG0093|consen  114 DWITQIKTYSWDNAQVILVGNKCDMDSERV--ISHERGRQLADQLG---------------FEFFETSAKENINVKQVFE  176 (193)
T ss_pred             HHHHHheeeeccCceEEEEecccCCcccee--eeHHHHHHHHHHhC---------------hHHhhhcccccccHHHHHH
Confidence            233333      346789999999876432  34455555555442               3678899998888776544


Q ss_pred             h
Q 022736          254 L  254 (293)
Q Consensus       254 ~  254 (293)
                      .
T Consensus       177 ~  177 (193)
T KOG0093|consen  177 R  177 (193)
T ss_pred             H
Confidence            3

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=3.2e-07  Score=80.63  Aligned_cols=116  Identities=18%  Similarity=0.237  Sum_probs=73.8

Q ss_pred             EEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCCCCC
Q 022736          123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLVSP  201 (293)
Q Consensus       123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~~~~  201 (293)
                      +-|+|.||..   -++     ..++....-.|..++|+.|.....+-.-    .+...++.-++.- .+|+-||+|+++.
T Consensus        88 VSfVDaPGHe---~LM-----ATMLsGAAlMDgAlLvIaANEpcPQPQT----~EHl~AleIigik~iiIvQNKIDlV~~  155 (415)
T COG5257          88 VSFVDAPGHE---TLM-----ATMLSGAALMDGALLVIAANEPCPQPQT----REHLMALEIIGIKNIIIVQNKIDLVSR  155 (415)
T ss_pred             EEEeeCCchH---HHH-----HHHhcchhhhcceEEEEecCCCCCCCch----HHHHHHHhhhccceEEEEecccceecH
Confidence            6799999942   112     2334555567889999998653321110    1134445555544 4556699999988


Q ss_pred             CCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCC
Q 022736          202 ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKS  262 (293)
Q Consensus       202 ~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~  262 (293)
                      ++..+.+.++++.++.-..            .-.+++++||..+.|++.|.+++++.-..|
T Consensus       156 E~AlE~y~qIk~FvkGt~A------------e~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         156 ERALENYEQIKEFVKGTVA------------ENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHHHHHHHHHHHHhccccc------------CCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            7544555666666653221            225789999999999999999998754333

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.37  E-value=6.5e-07  Score=81.68  Aligned_cols=70  Identities=14%  Similarity=0.150  Sum_probs=35.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      ..++++++|.||+..+..-.+.++ +.  ......|.+|.+.+..-......       .....++.+.+..+|-||+|.
T Consensus        84 ~~pnv~lWDlPG~gt~~f~~~~Yl-~~--~~~~~yD~fiii~s~rf~~ndv~-------La~~i~~~gK~fyfVRTKvD~  153 (376)
T PF05049_consen   84 KFPNVTLWDLPGIGTPNFPPEEYL-KE--VKFYRYDFFIIISSERFTENDVQ-------LAKEIQRMGKKFYFVRTKVDS  153 (376)
T ss_dssp             S-TTEEEEEE--GGGSS--HHHHH-HH--TTGGG-SEEEEEESSS--HHHHH-------HHHHHHHTT-EEEEEE--HHH
T ss_pred             CCCCCeEEeCCCCCCCCCCHHHHH-HH--ccccccCEEEEEeCCCCchhhHH-------HHHHHHHcCCcEEEEEecccc
Confidence            346899999999876533222222 11  12356676666655432222222       345667778899999999995

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=7.1e-07  Score=70.61  Aligned_cols=100  Identities=17%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEE-e
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVIL-N  194 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivl-N  194 (293)
                      ..-++||+|......+.-+|+        ..+-+.+++.|-++-...+.       ...|+.|+      +.||+++. |
T Consensus        68 hLQlWDTAGQERFRSLTTAFf--------RDAMGFlLiFDlT~eqSFLn-------vrnWlSQL~~hAYcE~PDivlcGN  132 (219)
T KOG0081|consen   68 HLQLWDTAGQERFRSLTTAFF--------RDAMGFLLIFDLTSEQSFLN-------VRNWLSQLQTHAYCENPDIVLCGN  132 (219)
T ss_pred             EEeeeccccHHHHHHHHHHHH--------HhhccceEEEeccchHHHHH-------HHHHHHHHHHhhccCCCCEEEEcC
Confidence            456899999888777776665        23345688888876544433       23455555      45776655 9


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG  253 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~  253 (293)
                      |+|+.+...+  .-++..++..++.               -+.|.+||-+|.++++..+
T Consensus       133 K~DL~~~R~V--s~~qa~~La~kyg---------------lPYfETSA~tg~Nv~kave  174 (219)
T KOG0081|consen  133 KADLEDQRVV--SEDQAAALADKYG---------------LPYFETSACTGTNVEKAVE  174 (219)
T ss_pred             ccchhhhhhh--hHHHHHHHHHHhC---------------CCeeeeccccCcCHHHHHH
Confidence            9999875432  2233333333321               3467889999998764443

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.36  E-value=7.2e-07  Score=76.66  Aligned_cols=91  Identities=19%  Similarity=0.199  Sum_probs=45.4

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc--hHHHHhhhcccCCchHHHHHHh--ccCEEEEeC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIA--FADVVILNK  195 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK  195 (293)
                      ...+-++|.||........-..   ..-.-...+.++|+|+|+..  +...+...   ..+.+.+.+..  ....+.+.|
T Consensus        47 ~~~l~iwD~pGq~~~~~~~~~~---~~~~if~~v~~LIyV~D~qs~~~~~~l~~~---~~~i~~l~~~sp~~~v~vfiHK  120 (232)
T PF04670_consen   47 FLPLNIWDCPGQDDFMENYFNS---QREEIFSNVGVLIYVFDAQSDDYDEDLAYL---SDCIEALRQYSPNIKVFVFIHK  120 (232)
T ss_dssp             SCEEEEEEE-SSCSTTHTTHTC---CHHHHHCTESEEEEEEETT-STCHHHHHHH---HHHHHHHHHHSTT-EEEEEEE-
T ss_pred             CcEEEEEEcCCccccccccccc---cHHHHHhccCEEEEEEEcccccHHHHHHHH---HHHHHHHHHhCCCCeEEEEEee
Confidence            3567899999976553331100   00111256788999999983  22222221   01122222221  235788999


Q ss_pred             CCCCCCCCCcchHHHHHHHHH
Q 022736          196 VDLVSPERSGDSLDELEKEIH  216 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~  216 (293)
                      +|++.++.+......+.+.+.
T Consensus       121 ~D~l~~~~r~~~~~~~~~~i~  141 (232)
T PF04670_consen  121 MDLLSEDEREEIFRDIQQRIR  141 (232)
T ss_dssp             CCCS-HHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHH
Confidence            999987654344444444443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=4.8e-06  Score=65.53  Aligned_cols=147  Identities=19%  Similarity=0.210  Sum_probs=81.6

Q ss_pred             EEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      +++.|+.|+|||-|+.++++.+ .+..-..|--+||+.      ++.-+                               
T Consensus        12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSr------IinVG-------------------------------   54 (214)
T KOG0086|consen   12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSR------IVNVG-------------------------------   54 (214)
T ss_pred             eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecce------eeeec-------------------------------
Confidence            6779999999999999999752 111112233345541      11111                               


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE-
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI-  192 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv-  192 (293)
                          ....+.-|+||+|......+.+...        ..+.+.++|.|.++.......    ..+..-.+.+.-+.++| 
T Consensus        55 ----gK~vKLQIWDTAGQErFRSVtRsYY--------RGAAGAlLVYD~TsrdsfnaL----tnWL~DaR~lAs~nIvvi  118 (214)
T KOG0086|consen   55 ----GKTVKLQIWDTAGQERFRSVTRSYY--------RGAAGALLVYDITSRDSFNAL----TNWLTDARTLASPNIVVI  118 (214)
T ss_pred             ----CcEEEEEEeecccHHHHHHHHHHHh--------ccccceEEEEeccchhhHHHH----HHHHHHHHhhCCCcEEEE
Confidence                0123467999999888777776543        334567888998865443211    00122223344444444 


Q ss_pred             --EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          193 --LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       193 --lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                        -||.|+-++.++    .-++ .-+....        +.    --.+.+|++||+++++-
T Consensus       119 L~GnKkDL~~~R~V----tflE-As~FaqE--------ne----l~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen  119 LCGNKKDLDPEREV----TFLE-ASRFAQE--------NE----LMFLETSALTGENVEEA  162 (214)
T ss_pred             EeCChhhcChhhhh----hHHH-HHhhhcc--------cc----eeeeeecccccccHHHH
Confidence              499999776542    1111 1111100        00    12356899999998743

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.34  E-value=7.1e-07  Score=91.08  Aligned_cols=124  Identities=19%  Similarity=0.124  Sum_probs=67.3

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      .+.+.|+||||......+.        ......+|.+++|+|+..........     ....+.....|.++++||+|+.
T Consensus       525 ~p~i~fiDTPGhe~F~~lr--------~~g~~~aDivlLVVDa~~Gi~~qT~e-----~I~~lk~~~iPiIVViNKiDL~  591 (1049)
T PRK14845        525 IPGLLFIDTPGHEAFTSLR--------KRGGSLADLAVLVVDINEGFKPQTIE-----AINILRQYKTPFVVAANKIDLI  591 (1049)
T ss_pred             cCcEEEEECCCcHHHHHHH--------HhhcccCCEEEEEEECcccCCHhHHH-----HHHHHHHcCCCEEEEEECCCCc
Confidence            3568999999954332221        11234578999999998643222211     2233444466899999999987


Q ss_pred             CCCCC--------------cchHHHHHHHHH-------hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          200 SPERS--------------GDSLDELEKEIH-------EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       200 ~~~~~--------------~~~~~~~~~~l~-------~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .....              .....++...+.       +..-.+..+.........-.++++||++|+|+++|..++.
T Consensus       592 ~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~  669 (1049)
T PRK14845        592 PGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA  669 (1049)
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence            43210              011222222211       1110010000001111235678999999999999988874

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.33  E-value=8.5e-07  Score=70.49  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=25.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~   70 (293)
                      .++++|.+|+|||||+|+|+    +.+...+++.+|.
T Consensus        85 ~~~~~G~~~vGKstlin~l~----~~~~~~~~~~~~~  117 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALV----GKKKVSVSATPGK  117 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHh----CCCceeeCCCCCc
Confidence            68889999999999999999    4444455666664

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=1.5e-06  Score=85.48  Aligned_cols=144  Identities=19%  Similarity=0.184  Sum_probs=86.6

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCc----cccchhhhhcCCCCcchhhhhhccCcceeeccc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE----IGVERAMINEGEGGALVEEWVELANGCICCTVK  104 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~----~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~  104 (293)
                      ..++.-+.|+|...+|||||..+|+-..     ++++. .|+.    ...|....+.       +.-+.+...|++|.-.
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~t-----G~i~k-~G~v~~g~~~~D~~e~Eq-------eRGITI~saa~s~~~~   73 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYT-----GIISK-IGEVHDGAATMDWMEQEQ-------ERGITITSAATTLFWK   73 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHc-----CCcCC-CccccCCCccCCCcHHHH-------hcCCEEeeeeeEEEEc
Confidence            3467779999999999999999998531     12222 3331    1122211111       1123445556655333


Q ss_pred             hhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736          105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ  184 (293)
Q Consensus       105 ~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q  184 (293)
                      +              +..+-||||||..+...-.        .++..-+|+.|.|+|+.........        ..++|
T Consensus        74 ~--------------~~~iNlIDTPGHVDFt~EV--------~rslrvlDgavvVvdaveGV~~QTE--------tv~rq  123 (697)
T COG0480          74 G--------------DYRINLIDTPGHVDFTIEV--------ERSLRVLDGAVVVVDAVEGVEPQTE--------TVWRQ  123 (697)
T ss_pred             C--------------ceEEEEeCCCCccccHHHH--------HHHHHhhcceEEEEECCCCeeecHH--------HHHHH
Confidence            2              3678899999988753222        2344568999999999876544322        23333


Q ss_pred             H---hccCEEEEeCCCCCCCCCCcchHHHHHHHHH
Q 022736          185 I---AFADVVILNKVDLVSPERSGDSLDELEKEIH  216 (293)
Q Consensus       185 i---~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~  216 (293)
                      .   ..|-++++||+|.+..+- .....++...+.
T Consensus       124 a~~~~vp~i~fiNKmDR~~a~~-~~~~~~l~~~l~  157 (697)
T COG0480         124 ADKYGVPRILFVNKMDRLGADF-YLVVEQLKERLG  157 (697)
T ss_pred             HhhcCCCeEEEEECccccccCh-hhhHHHHHHHhC
Confidence            3   448899999999987642 134445555544

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=2.3e-06  Score=66.41  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=67.6

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH--HHHhc-cCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQIAF-ADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~qi~~-a~iivlNK~  196 (293)
                      +..+-+.|..|.....++...+.        ....++|||+|+...........+   .-.++  .|+.. +.+|..||-
T Consensus        60 N~kfNvwdvGGqd~iRplWrhYy--------~gtqglIFV~Dsa~~dr~eeAr~E---Lh~ii~~~em~~~~~LvlANkQ  128 (180)
T KOG0071|consen   60 NVKFNVWDVGGQDKIRPLWRHYY--------TGTQGLIFVVDSADRDRIEEARNE---LHRIINDREMRDAIILILANKQ  128 (180)
T ss_pred             eeEEeeeeccCchhhhHHHHhhc--------cCCceEEEEEeccchhhHHHHHHH---HHHHhCCHhhhcceEEEEecCc
Confidence            44577899999887777775433        234568999999765322111111   11112  23333 345566999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+.++.    ...++.+.++    ..+ ++.     ...-+.+.++.+|.|..+-..|+...
T Consensus       129 Dlp~A~----~pqei~d~le----Le~-~r~-----~~W~vqp~~a~~gdgL~eglswlsnn  176 (180)
T KOG0071|consen  129 DLPDAM----KPQEIQDKLE----LER-IRD-----RNWYVQPSCALSGDGLKEGLSWLSNN  176 (180)
T ss_pred             cccccc----CHHHHHHHhc----ccc-ccC-----CccEeeccccccchhHHHHHHHHHhh
Confidence            998765    3466666553    111 111     12456788999999988887887543

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=98.29  E-value=1.2e-06  Score=69.56  Aligned_cols=143  Identities=19%  Similarity=0.219  Sum_probs=83.0

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++++|-.|+|||+|+-++.......       ...+++++|...-.           +.+                    
T Consensus        14 iLlIGeSGVGKSSLllrFv~~~fd~-------~~~~tIGvDFkvk~-----------m~v--------------------   55 (209)
T KOG0080|consen   14 ILLIGESGVGKSSLLLRFVSNTFDD-------LHPTTIGVDFKVKV-----------MQV--------------------   55 (209)
T ss_pred             EEEEccCCccHHHHHHHHHhcccCc-------cCCceeeeeEEEEE-----------EEE--------------------
Confidence            6678999999999999999642111       01112344422100           000                    


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-------
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------  187 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~-------  187 (293)
                        ...+.++.|+||+|......+...+.        ..+.++|+|.|.+.......       ..-|++.+..       
T Consensus        56 --dg~~~KlaiWDTAGqErFRtLTpSyy--------RgaqGiIlVYDVT~Rdtf~k-------Ld~W~~Eld~Ystn~di  118 (209)
T KOG0080|consen   56 --DGKRLKLAIWDTAGQERFRTLTPSYY--------RGAQGIILVYDVTSRDTFVK-------LDIWLKELDLYSTNPDI  118 (209)
T ss_pred             --cCceEEEEEEeccchHhhhccCHhHh--------ccCceeEEEEEccchhhHHh-------HHHHHHHHHhhcCCccH
Confidence              01345688999999766544443322        34567899999986544322       1223333321       


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT  249 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~  249 (293)
                      ..++|-||+|.-++..  ...++-.+..+..+               -.++.+||++.+++.
T Consensus       119 ikmlVgNKiDkes~R~--V~reEG~kfAr~h~---------------~LFiE~SAkt~~~V~  163 (209)
T KOG0080|consen  119 IKMLVGNKIDKESERV--VDREEGLKFARKHR---------------CLFIECSAKTRENVQ  163 (209)
T ss_pred             hHhhhcccccchhccc--ccHHHHHHHHHhhC---------------cEEEEcchhhhccHH
Confidence            2467889999654322  34555555555443               234678999999865

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.28  E-value=2.4e-06  Score=73.34  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=23.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..++-+|.|+|++++|||||+|.|+.
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~   29 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFG   29 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhC
Confidence            45678899999999999999999994

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.27  E-value=1e-06  Score=78.52  Aligned_cols=36  Identities=39%  Similarity=0.440  Sum_probs=29.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE   71 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~   71 (293)
                      ...++++|.||+|||||+|+|.    +.+.+.+.+.+|.|
T Consensus       121 ~~~~~~~G~pnvGKSsliN~l~----~~~~~~~~~~~g~T  156 (287)
T PRK09563        121 AIRAMIIGIPNVGKSTLINRLA----GKKIAKTGNRPGVT  156 (287)
T ss_pred             ceEEEEECCCCCCHHHHHHHHh----cCCccccCCCCCeE
Confidence            3468889999999999999999    66666677777763

>COG2403 Predicted GTPase [General function prediction only]

Probab=98.27  E-value=7e-05  Score=67.33  Aligned_cols=167  Identities=28%  Similarity=0.356  Sum_probs=100.2

Q ss_pred             CceeEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEEcCC---CCccccchhhhhc----CCCCcchhhhhhc----c
Q 022736           30 VSVGVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNEF---GEEIGVERAMINE----GEGGALVEEWVEL----A   95 (293)
Q Consensus        30 ~~~pvi~i~G-~~gaGKTTlin~ll~~--~~~~~vavv~~d~---g~~~~~d~~~~~~----~~~~~~~~~~~~l----~   95 (293)
                      ...|++.|+| ..|+|||+.-..+.+.  ..|.++.++..-.   |-++.++-.++..    +......++.-++    .
T Consensus       124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~I~  203 (449)
T COG2403         124 LEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESYIP  203 (449)
T ss_pred             hcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchhhHHHHhhccc
Confidence            4578888777 5799999998888763  5578887776532   1111111111111    1111122111111    1


Q ss_pred             Cc-ceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcc
Q 022736           96 NG-CICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH  174 (293)
Q Consensus        96 ~g-cicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~  174 (293)
                      -| ....  .-++...+++-..   .-|+|++|-.|-.-|               .++.|.-|+|+|+..........  
T Consensus       204 tg~~vlA--Gvdy~~vlke~~~---~aD~IlwdGgnndfP---------------fvkpd~~Ivvvda~rpg~ei~~~--  261 (449)
T COG2403         204 TGGGVLA--GVDYGTVLKEGEK---EADFILWDGGNNDFP---------------FVKPDLHIVVVDALRPGEEIGSF--  261 (449)
T ss_pred             cccceEe--eeeHHHHHHHHhh---hccEEEEeCCCCCCC---------------cccCCeeEEEecCCCCchhhccC--
Confidence            11 1110  1123333333221   248999998885544               15677889999998755444332  


Q ss_pred             cCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEe
Q 022736          175 LSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS  227 (293)
Q Consensus       175 ~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~  227 (293)
                          +.- ..+..||++++||+|-...+    ...++.+.++++||.|.++.+
T Consensus       262 ----pGe-~~irlAD~VIItkveea~~~----kvrkI~~~I~~iNP~A~Vi~~  305 (449)
T COG2403         262 ----PGE-LRIRLADLVIITKVEEAMAE----KVRKIVRNIEEINPKAEVILA  305 (449)
T ss_pred             ----CCc-eeeeeccEEEEecccccchH----HHHHHHHHHHhhCCCcEEEec
Confidence                111 23678999999999988765    578999999999999999886

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.24  E-value=1.6e-06  Score=80.58  Aligned_cols=41  Identities=27%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      .+-|+||||+......... +...++.....+|.+++|+|+.
T Consensus        73 ~i~i~D~aGl~~ga~~g~g-lg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         73 PVELIDVAGLVPGAHEGRG-LGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             eEEEEEcCCcCCCccchhh-HHHHHHHHHHHCCEEEEEEeCC
Confidence            4669999998654332222 1234456678899999999996

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=98.23  E-value=8.5e-06  Score=63.84  Aligned_cols=100  Identities=15%  Similarity=0.128  Sum_probs=61.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-----ccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-----FADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-----~a~iivlNK  195 (293)
                      .+.-|+||+|......+...++        ....++++|.|.++......       ...|+..++     .+-++|-||
T Consensus        57 VkLqIwDtAGqErFrtitstyy--------rgthgv~vVYDVTn~ESF~N-------v~rWLeei~~ncdsv~~vLVGNK  121 (198)
T KOG0079|consen   57 VKLQIWDTAGQERFRTITSTYY--------RGTHGVIVVYDVTNGESFNN-------VKRWLEEIRNNCDSVPKVLVGNK  121 (198)
T ss_pred             EEEEEeecccHHHHHHHHHHHc--------cCCceEEEEEECcchhhhHh-------HHHHHHHHHhcCccccceecccC
Confidence            4567999999766666665443        34567899999988665432       233444443     245899999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE  252 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~  252 (293)
                      +|......  ..-+..++...+.+               -++|.+|++..++++..-
T Consensus       122 ~d~~~Rrv--V~t~dAr~~A~~mg---------------ie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen  122 NDDPERRV--VDTEDARAFALQMG---------------IELFETSAKENENVEAMF  161 (198)
T ss_pred             CCCcccee--eehHHHHHHHHhcC---------------chheehhhhhcccchHHH
Confidence            99765432  12233333322221               357888998888876543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.23  E-value=3.1e-06  Score=77.86  Aligned_cols=91  Identities=19%  Similarity=0.260  Sum_probs=57.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      -+.++|.+|+|||||+|+|++...+ .+.+.++..+|+|.++....+                                 
T Consensus       156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---------------------------------  202 (360)
T TIGR03597       156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---------------------------------  202 (360)
T ss_pred             eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---------------------------------
Confidence            5788999999999999999975322 345677788886433211100                                 


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcc--hhhccccccccEEEEEcccc
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLD--DQLESAVRLDSIITVVDAKN  164 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~--~~~~~~~~~d~vi~vvDa~~  164 (293)
                             +.++.++||||+..+..+...+-.+  ..+.....+..+++.+|...
T Consensus       203 -------~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q  249 (360)
T TIGR03597       203 -------DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQ  249 (360)
T ss_pred             -------CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCC
Confidence                   1235799999998776554322110  01223345667788888754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01855 YqeH YqeH

Probab=98.21  E-value=1.2e-06  Score=73.13  Aligned_cols=38  Identities=32%  Similarity=0.423  Sum_probs=27.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCC----eEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGK----RIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~----~vavv~~d~g~   70 (293)
                      ..+.++|.+|+|||||+|+|+......    ..+.++..+|+
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gt  169 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGT  169 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCe
Confidence            468899999999999999999642211    22345566665

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=3.1e-06  Score=77.56  Aligned_cols=110  Identities=16%  Similarity=0.209  Sum_probs=72.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLV  199 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D~~  199 (293)
                      .-.-|||.||..+.        ....+....-+|..+++||+.........     +...+++.++... ++|+||+|+.
T Consensus        50 ~~~~fIDvpgh~~~--------i~~miag~~~~d~alLvV~~deGl~~qtg-----EhL~iLdllgi~~giivltk~D~~  116 (447)
T COG3276          50 GVMGFIDVPGHPDF--------ISNLLAGLGGIDYALLVVAADEGLMAQTG-----EHLLILDLLGIKNGIIVLTKADRV  116 (447)
T ss_pred             CceEEeeCCCcHHH--------HHHHHhhhcCCceEEEEEeCccCcchhhH-----HHHHHHHhcCCCceEEEEeccccc
Confidence            35679999997643        12334555678889999999654433221     2455677788776 9999999999


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +..+       +...++++-....        +.-.++|.+|+++|+|+++|...+.+.
T Consensus       117 d~~r-------~e~~i~~Il~~l~--------l~~~~i~~~s~~~g~GI~~Lk~~l~~L  160 (447)
T COG3276         117 DEAR-------IEQKIKQILADLS--------LANAKIFKTSAKTGRGIEELKNELIDL  160 (447)
T ss_pred             cHHH-------HHHHHHHHHhhcc--------cccccccccccccCCCHHHHHHHHHHh
Confidence            7643       3333333222211        122467999999999999998877543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.20  E-value=1.9e-06  Score=69.52  Aligned_cols=36  Identities=28%  Similarity=0.313  Sum_probs=26.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~   70 (293)
                      +...++++|.+|+|||||+|.|++    .+...+...+|+
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~----~~~~~~~~~~~~  134 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLN----KLKLKVGNVPGT  134 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHc----cccccccCCCCc
Confidence            456688999999999999999994    333335555554

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PTZ00099 rab6; Provisional

Probab=98.19  E-value=8.5e-06  Score=67.32  Aligned_cols=111  Identities=15%  Similarity=0.087  Sum_probs=66.1

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVD  197 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D  197 (293)
                      ..++.|+||+|......+...++        ..+|++|+|+|.+......... .  .+.......  ..+.++|.||+|
T Consensus        28 ~v~l~iwDt~G~e~~~~~~~~~~--------~~ad~~ilv~D~t~~~sf~~~~-~--w~~~i~~~~~~~~piilVgNK~D   96 (176)
T PTZ00099         28 PVRLQLWDTAGQERFRSLIPSYI--------RDSAAAIVVYDITNRQSFENTT-K--WIQDILNERGKDVIIALVGNKTD   96 (176)
T ss_pred             EEEEEEEECCChHHhhhccHHHh--------CCCcEEEEEEECCCHHHHHHHH-H--HHHHHHHhcCCCCeEEEEEECcc
Confidence            35688999999866554433222        4688999999998743321110 0  011111111  234578999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+....  ...+.....+..+               ..++.+||++|+|++++..|+...
T Consensus        97 L~~~~~v--~~~e~~~~~~~~~---------------~~~~e~SAk~g~nV~~lf~~l~~~  140 (176)
T PTZ00099         97 LGDLRKV--TYEEGMQKAQEYN---------------TMFHETSAKAGHNIKVLFKKIAAK  140 (176)
T ss_pred             cccccCC--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHHH
Confidence            8753321  2233333333221               135789999999999999888653

>PRK13796 GTPase YqeH; Provisional

Probab=98.19  E-value=2.4e-06  Score=78.72  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCC-eEEEEEcCCCCcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGK-RIAVILNEFGEEI   72 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~-~vavv~~d~g~~~   72 (293)
                      -+.++|.+|+|||||+|+|++...+. +.+.++.-+|+|.
T Consensus       162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~  201 (365)
T PRK13796        162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTL  201 (365)
T ss_pred             eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccc
Confidence            47789999999999999999753232 4556788888743

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.19  E-value=5.2e-07  Score=72.93  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=21.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++|.+|+|||||+|.|+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            78999999999999999999964

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.18  E-value=3.8e-06  Score=74.70  Aligned_cols=39  Identities=28%  Similarity=0.406  Sum_probs=32.6

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CC-C-CeEEEEEcCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KH-G-KRIAVILNEFG   69 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~-~-~~vavv~~d~g   69 (293)
                      +..+++|+|+.|+||||++..|...  .. + .+++++..|+.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~  235 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY  235 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence            4568999999999999999999764  22 4 89999998874

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.17  E-value=1.9e-06  Score=76.46  Aligned_cols=35  Identities=37%  Similarity=0.468  Sum_probs=27.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~   70 (293)
                      ...++++|.||+|||||+|+|.    +.+.+.+.+.+|.
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~----~~~~~~~~~~~g~  152 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLA----GKKVAKVGNRPGV  152 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHh----CCCccccCCCCCe
Confidence            3458889999999999999999    5555556666775

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=9.3e-06  Score=63.66  Aligned_cols=147  Identities=24%  Similarity=0.334  Sum_probs=87.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      .-|+++|-.|+|||-|++++.+.  .+|         .|+++++|..+-           .+++++              
T Consensus         8 fkivlvgnagvgktclvrrftqglfppg---------qgatigvdfmik-----------tvev~g--------------   53 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPG---------QGATIGVDFMIK-----------TVEVNG--------------   53 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCC---------CCceeeeeEEEE-----------EEEECC--------------
Confidence            34778999999999999999874  233         233344443221           112211              


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-cc-
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FA-  188 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a-  188 (293)
                              ...+.-|+||+|......+.+...        ..+..+|++.|.+--.       .....++|++.++ +| 
T Consensus        54 --------ekiklqiwdtagqerfrsitqsyy--------rsahalilvydiscqp-------sfdclpewlreie~yan  110 (213)
T KOG0095|consen   54 --------EKIKLQIWDTAGQERFRSITQSYY--------RSAHALILVYDISCQP-------SFDCLPEWLREIEQYAN  110 (213)
T ss_pred             --------eEEEEEEeeccchHHHHHHHHHHh--------hhcceEEEEEecccCc-------chhhhHHHHHHHHHHhh
Confidence                    234567999999887777775443        3455678888875321       1122466776664 23 


Q ss_pred             ----CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736          189 ----DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG  253 (293)
Q Consensus       189 ----~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~  253 (293)
                          -++|-||+|+.+..+   ...++-....    .+          ...-.+.+||+..++++.|-.
T Consensus       111 ~kvlkilvgnk~d~~drre---vp~qigeefs----~~----------qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen  111 NKVLKILVGNKIDLADRRE---VPQQIGEEFS----EA----------QDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             cceEEEeeccccchhhhhh---hhHHHHHHHH----Hh----------hhhhhhhhcccchhhHHHHHH
Confidence                477889999886542   1222222211    11          112246789999999887753

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=7e-06  Score=77.43  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=71.7

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhh--cccCCchHHHHHHhc-cCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY--RHLSSYPEAIHQIAF-ADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~--~~~~~~~~~~~qi~~-a~iivlNK~  196 (293)
                      ..-+.|+|+||..+.-        -.++.....+|..++|||++.........  ....+....++-++. -.++++||+
T Consensus       254 ~~~~tliDaPGhkdFi--------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKm  325 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFI--------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKM  325 (603)
T ss_pred             ceeEEEecCCCccccc--------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecc
Confidence            4568899999955432        22345557788999999998654332221  111222333444443 368889999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhc-CCCEEEEeecCCCCchhhcccccCCcchhh------hhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEIN-SLAHVIRSVRCQVDLSEVLNCRAYDATHVT------RLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~ln-p~a~i~~~~~~~~~~~~i~~~sa~~~~~~~------~l~~~l~~  257 (293)
                      |+++=.+  ...++++..|...- ..+...+.      --.++|+|+++|+|+-      +|.+|...
T Consensus       326 D~V~Wsq--~RF~eIk~~l~~fL~~~~gf~es------~v~FIPiSGl~GeNL~k~~~~~~l~~WY~G  385 (603)
T KOG0458|consen  326 DLVSWSQ--DRFEEIKNKLSSFLKESCGFKES------SVKFIPISGLSGENLIKIEQENELSQWYKG  385 (603)
T ss_pred             cccCccH--HHHHHHHHHHHHHHHHhcCcccC------CcceEecccccCCcccccccchhhhhhhcC
Confidence            9997443  23455555555433 22222211      1257899999999853      56667654

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=98.13  E-value=5.1e-06  Score=67.19  Aligned_cols=39  Identities=23%  Similarity=0.444  Sum_probs=34.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      +++|+.|+|+.|||||||+.+|++.  ..|.++++|.+.-.
T Consensus         1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh   41 (161)
T COG1763           1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH   41 (161)
T ss_pred             CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence            3689999999999999999999885  56899999987654

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.11  E-value=3.1e-06  Score=78.72  Aligned_cols=37  Identities=22%  Similarity=0.378  Sum_probs=33.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI   72 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~   72 (293)
                      .-+|+++|+||+||||+||+|.    |.|..-|+..||.|-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLv----G~KkVsVS~TPGkTK  350 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALV----GRKKVSVSSTPGKTK  350 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHh----cCceeeeecCCCCcc
Confidence            4568899999999999999999    888889999999843

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=98.08  E-value=9.5e-05  Score=60.46  Aligned_cols=130  Identities=15%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +.+..+-.|+||||+.-.|...  ..|+++.++..|+.. ..+... ... .                  .....+...+
T Consensus         2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~-~~~~~~-~~~-~------------------~~~~~l~~~~   60 (169)
T cd02037           2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG-PSIPKM-WRG-P------------------MKMGAIKQFL   60 (169)
T ss_pred             EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC-CCchHH-HhC-c------------------chHHHHHHHH
Confidence            4567889999999999888663  468999999998864 111111 100 0                  0011122222


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CE
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DV  190 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~i  190 (293)
                      ..+.  ..++|+||||||+........  .      .....+|.+++++.+.......-     ..+...+.+...+ ..
T Consensus        61 ~~~~--~~~yD~VIiD~pp~~~~~~~~--~------~~~~~ad~viiV~~p~~~s~~~~-----~~~~~~l~~~~~~~~g  125 (169)
T cd02037          61 TDVD--WGELDYLVIDMPPGTGDEHLT--L------AQSLPIDGAVIVTTPQEVALDDV-----RKAIDMFKKVNIPILG  125 (169)
T ss_pred             HHhh--cCCCCEEEEeCCCCCcHHHHH--H------HhccCCCeEEEEECCchhhHHHH-----HHHHHHHHhcCCCeEE
Confidence            2221  257999999999865432211  0      01135688899988764322111     0123344444443 46


Q ss_pred             EEEeCCCCC
Q 022736          191 VILNKVDLV  199 (293)
Q Consensus       191 ivlNK~D~~  199 (293)
                      +|+|+.+..
T Consensus       126 vv~N~~~~~  134 (169)
T cd02037         126 VVENMSYFV  134 (169)
T ss_pred             EEEcCCccc
Confidence            789998754

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.08  E-value=3.6e-06  Score=76.88  Aligned_cols=21  Identities=43%  Similarity=0.752  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++|+|++|+|||||||+|+.
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~  194 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIP  194 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcC
Confidence            589999999999999999994

>PRK12288 GTPase RsgA; Reviewed

Probab=98.06  E-value=3.7e-06  Score=76.70  Aligned_cols=21  Identities=38%  Similarity=0.721  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++|+|.+|+|||||+|+|+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~  227 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLP  227 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhcc
Confidence            588999999999999999994

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=98.05  E-value=1.5e-05  Score=70.30  Aligned_cols=93  Identities=22%  Similarity=0.271  Sum_probs=54.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC---ccccchhhhhcCCCCcchhhhhhc-cCcceeeccch
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE---EIGVERAMINEGEGGALVEEWVEL-ANGCICCTVKH  105 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~---~~~~d~~~~~~~~~~~~~~~~~~l-~~gcicc~~~~  105 (293)
                      ++++.|+|+.|||||||+.+|+..  ..| +++++.++...   ..+-|..........    .+..+ .+++.+-.-..
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~----~v~~~s~~~~~~~~~~~   75 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHFDAGAD----VVYGLTDGEWVASGRDR   75 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHHHCCCc----EEEEecCCeEEEEecCC
Confidence            368999999999999999999885  457 89999998632   012232222221100    00001 11222211223


Q ss_pred             hHHHHHHHHHhhcCCCCEEEEecCCCC
Q 022736          106 SLVQALEQLVQRKERLDHILLETTGLA  132 (293)
Q Consensus       106 ~l~~~l~~l~~~~~~~d~iiidt~G~~  132 (293)
                      ++.+.+..+.   .+.|++|||+.+-.
T Consensus        76 ~l~~~l~~l~---~~~D~vlVEG~k~~   99 (274)
T PRK14493         76 SLDDALDDLA---PGMDYAVVEGFKDS   99 (274)
T ss_pred             CHHHHHHhhC---cCCCEEEEECCCCC
Confidence            4555554432   36899999999854

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.05  E-value=3.3e-06  Score=74.50  Aligned_cols=36  Identities=36%  Similarity=0.551  Sum_probs=26.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g   69 (293)
                      .+.+++|.+|+|||||+|+|+.+. ..++.-|+...|
T Consensus       165 ~~svl~GqSGVGKSSLiN~L~p~~-~~~t~eIS~~~~  200 (301)
T COG1162         165 KITVLLGQSGVGKSTLINALLPEL-NQKTGEISEKLG  200 (301)
T ss_pred             CeEEEECCCCCcHHHHHHhhCchh-hhhhhhhcccCC
Confidence            389999999999999999998532 344555555443

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.04  E-value=1.7e-05  Score=71.36  Aligned_cols=91  Identities=12%  Similarity=0.287  Sum_probs=50.9

Q ss_pred             CCCEEEEecCCCCCc-------HHHHHhh-------hcch------hhccccccccEEEEEcccc-hHHHHhhhcccCCc
Q 022736          120 RLDHILLETTGLANP-------APLASVL-------WLDD------QLESAVRLDSIITVVDAKN-LLFQIDKYRHLSSY  178 (293)
Q Consensus       120 ~~d~iiidt~G~~~~-------~~~~~~~-------~~~~------~~~~~~~~d~vi~vvDa~~-~~~~~~~~~~~~~~  178 (293)
                      ..++.+|||||+.+.       .++...+       +.+.      ..-...+++++++.+-++. ....++        
T Consensus        81 ~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D--------  152 (373)
T COG5019          81 HLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD--------  152 (373)
T ss_pred             EEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH--------
Confidence            356789999997753       2222111       1000      0122347888999998653 333333        


Q ss_pred             hHHHHHHhc--cCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736          179 PEAIHQIAF--ADVVILNKVDLVSPERSGDSLDELEKEIHEI  218 (293)
Q Consensus       179 ~~~~~qi~~--a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l  218 (293)
                      .+.+.++..  ..+-|+.|+|....+++..-..++++.+...
T Consensus       153 Ie~Mk~ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~  194 (373)
T COG5019         153 IEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQY  194 (373)
T ss_pred             HHHHHHHhcccCeeeeeeccccCCHHHHHHHHHHHHHHHHHh
Confidence            234444432  3678999999999876533444444444444

>TIGR00092 GTP-binding protein YchF

Probab=98.04  E-value=8.8e-06  Score=74.31  Aligned_cols=102  Identities=20%  Similarity=0.125  Sum_probs=58.7

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++|+|.||+|||||+|.|.+.    +++-+.+.|-+|.......+             .         ..+.-.+.|..+
T Consensus         5 ~GivGlPn~GKSTlfnaLT~~----~~~~~a~ypftTi~p~~g~v-------------~---------v~d~r~d~L~~~   58 (368)
T TIGR00092         5 GGIVGLPNVGKSTLFAATTNL----LGNEAANPPFTTIEPNAGVV-------------N---------PSDPRLDLLAIY   58 (368)
T ss_pred             EEEECCCCCChHHHHHHHhCC----CccccCCCCCCCCCCceeEE-------------E---------echhHHHHHHHH
Confidence            578999999999999999953    33223343433121111000             0         111122333333


Q ss_pred             Hhhc--CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          115 VQRK--ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       115 ~~~~--~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      ....  ....+.++|.||+.........+ ....+.....+|.++.|||+.
T Consensus        59 ~~~~~~~~a~i~~~DiaGlv~gAs~g~Gl-gn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        59 IKPEKVPPTTTEFVDIAGLVGGASKGEGL-GNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hCCcCcCCceEEEEeccccccchhcccCc-chHHHHHHHhCCEEEEEEeCC
Confidence            3211  23467899999987755443322 133466778899999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=7.6e-06  Score=75.56  Aligned_cols=158  Identities=25%  Similarity=0.281  Sum_probs=86.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHc--cCCCCeEEEEEcCC---CCc--cccchhhhhcCCCCcchhhhhhccCcceeec
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEF---GEE--IGVERAMINEGEGGALVEEWVELANGCICCT  102 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~--~~~~~~vavv~~d~---g~~--~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~  102 (293)
                      .++=+|.++|..|+||||=+.++.-  .+.+.+|.|..+|.   |+-  ..+....+..- .+.. .+..+-.-|     
T Consensus       376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l-~~~~-v~lfekGYg-----  448 (587)
T KOG0781|consen  376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSAL-HGTM-VELFEKGYG-----  448 (587)
T ss_pred             CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHh-ccch-hHHHhhhcC-----
Confidence            3677899999999999999988743  13367888888874   220  01111111100 0000 011111111     


Q ss_pred             cchhHHHHHHHH-HhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736          103 VKHSLVQALEQL-VQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE  180 (293)
Q Consensus       103 ~~~~l~~~l~~l-~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~  180 (293)
                       .+.-.-+...+ ..+..++|+|+|||+| +.+..+++..+.   -+...-+.|.|++|-.|--+.+-.+...   .+-.
T Consensus       449 -kd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~---k~~~~~~pd~i~~vgealvg~dsv~q~~---~fn~  521 (587)
T KOG0781|consen  449 -KDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLA---KLIKVNKPDLILFVGEALVGNDSVDQLK---KFNR  521 (587)
T ss_pred             -CChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHH---HHHhcCCCceEEEehhhhhCcHHHHHHH---HHHH
Confidence             01111111111 2345789999999999 677777765432   1334467898999877754433333211   1222


Q ss_pred             HHHHH---hccCEEEEeCCCCCCC
Q 022736          181 AIHQI---AFADVVILNKVDLVSP  201 (293)
Q Consensus       181 ~~~qi---~~a~iivlNK~D~~~~  201 (293)
                      ++...   +.-|-++++|+|.+++
T Consensus       522 al~~~~~~r~id~~~ltk~dtv~d  545 (587)
T KOG0781|consen  522 ALADHSTPRLIDGILLTKFDTVDD  545 (587)
T ss_pred             HHhcCCCccccceEEEEeccchhh
Confidence            22222   2348999999998874

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=97.97  E-value=4e-05  Score=58.83  Aligned_cols=92  Identities=23%  Similarity=0.257  Sum_probs=56.4

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcc---hhhhhhccCcceeeccchhHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGAL---VEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~---~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ++++|..|+||||+...+...  ..++++.++..|+..   +.............   .-.......||.|-... .+.+
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~~~---~~~~~~~~~~~~~~~i~~g~~~~~~~g~~~~~n~-~~~~   77 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPDD---LPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENA-LLNA   77 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCchh---hHHHHhhccCCceEEEEecccccCCCCCEehhhH-HHHH
Confidence            678999999999999888663  458889999999843   22222222111111   12223346788887542 2233


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCC
Q 022736          110 ALEQLVQRKERLDHILLETTGLA  132 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~  132 (293)
                      .+..+.  ..++|++++||++-.
T Consensus        78 ~l~~~~--~~~~~~vivDt~ag~   98 (116)
T cd02034          78 LLRHLV--LTRDEQVVVDTEAGL   98 (116)
T ss_pred             HHHHeE--ccCCCEEEEecHHHH
Confidence            333222  356789999999743

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=1.2e-05  Score=72.54  Aligned_cols=103  Identities=24%  Similarity=0.249  Sum_probs=59.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .-++|+|.||+|||||+|++.+.    . +-+.|.|=+|+......+             .++. |        -...|.
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~----~-a~~aNYPF~TIePN~Giv-------------~v~d-~--------rl~~L~   55 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKA----G-AEIANYPFCTIEPNVGVV-------------YVPD-C--------RLDELA   55 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcC----C-ccccCCCcccccCCeeEE-------------ecCc-h--------HHHHHH
Confidence            34789999999999999999953    2 223333322222111111             1111 1        111222


Q ss_pred             HHHhhc---CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          113 QLVQRK---ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       113 ~l~~~~---~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      .+..+.   -...+=|+|.+|+...++..+.+. ...+....++|.++.|||+.
T Consensus        56 ~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLG-NkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          56 EIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLG-NKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             HhcCCCCcEEeeeeEEEEecccCCCcccCCCcc-hHHHHhhhhcCeEEEEEEec
Confidence            222211   123456899999877665554433 45577888999999999987

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.96  E-value=1.3e-05  Score=72.16  Aligned_cols=121  Identities=12%  Similarity=0.242  Sum_probs=81.5

Q ss_pred             EEEEecCCCCCcHHHHHhhhcchhhccc--cccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          123 HILLETTGLANPAPLASVLWLDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~--~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      +.|+||.|-.   ++++     .+++..  .++|..+++|-|....+....     +....+-.++.|.+++++|+|+.+
T Consensus       203 VsfVDtvGHE---pwLr-----TtirGL~gqk~dYglLvVaAddG~~~~tk-----EHLgi~~a~~lPviVvvTK~D~~~  269 (527)
T COG5258         203 VSFVDTVGHE---PWLR-----TTIRGLLGQKVDYGLLVVAADDGVTKMTK-----EHLGIALAMELPVIVVVTKIDMVP  269 (527)
T ss_pred             EEEEecCCcc---HHHH-----HHHHHHhccccceEEEEEEccCCcchhhh-----HhhhhhhhhcCCEEEEEEecccCc
Confidence            5789999953   2221     112111  468888999988776655443     244556667899999999999998


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCEEEEeecC----------CCCchhhcccccCCcchhhhhhhhhh
Q 022736          201 PERSGDSLDELEKEIHEINSLAHVIRSVRC----------QVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~----------~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+......+++.+.|+..+.-.-+++....          .-...++|.+|+.||+|.+-|..++.
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            876666677777788776644434432211          11245788899999999988877664

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.95  E-value=0.00027  Score=57.94  Aligned_cols=124  Identities=16%  Similarity=0.159  Sum_probs=69.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +.+..+..|+||||+.-.|...  ..|+++.++..|++. .+++.........                   ...+.   
T Consensus         2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~-~~~~~~~~~~~~~-------------------~~~~~---   58 (179)
T cd02036           2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGL-RNLDLILGLENRV-------------------VYTLH---   58 (179)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCchhhccccccC-------------------Ccchh---
Confidence            4566789999999999998764  568999999999853 2222211100000                   00011   


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-cCE
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADV  190 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~-a~i  190 (293)
                       +.+.    -|++||||||...... .         ......|.++.++++.......-.     ...+.+.+... ...
T Consensus        59 -~~~~----~d~viiD~p~~~~~~~-~---------~~l~~ad~viiv~~~~~~s~~~~~-----~~~~~~~~~~~~~~~  118 (179)
T cd02036          59 -DVLA----GDYILIDSPAGIERGF-I---------TAIAPADEALLVTTPEISSLRDAD-----RVKGLLEALGIKVVG  118 (179)
T ss_pred             -hccc----CCEEEEECCCCCcHHH-H---------HHHHhCCcEEEEeCCCcchHHHHH-----HHHHHHHHcCCceEE
Confidence             1111    1899999998554321 1         112456788999988643321110     01223333222 246


Q ss_pred             EEEeCCCCCC
Q 022736          191 VILNKVDLVS  200 (293)
Q Consensus       191 ivlNK~D~~~  200 (293)
                      +++|+.+.-.
T Consensus       119 iv~N~~~~~~  128 (179)
T cd02036         119 VIVNRVRPDM  128 (179)
T ss_pred             EEEeCCcccc
Confidence            8999998653

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=3.5e-05  Score=69.75  Aligned_cols=54  Identities=15%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             cccccEEEEEcccch-HHHHhhhcccCCchHHHHHHh--ccCEEEEeCCCCCCCCCCcchHHHHHHHHH
Q 022736          151 VRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIH  216 (293)
Q Consensus       151 ~~~d~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D~~~~~~~~~~~~~~~~~l~  216 (293)
                      .++++.++.+-+... ..+++        .+.+..+.  ...+-|+.|+|.+..+++    ..++..+.
T Consensus       128 ~RVH~cLYFI~P~ghgL~p~D--------i~~Mk~l~~~vNiIPVI~KaD~lT~~El----~~~K~~I~  184 (366)
T KOG2655|consen  128 NRVHCCLYFISPTGHGLKPLD--------IEFMKKLSKKVNLIPVIAKADTLTKDEL----NQFKKRIR  184 (366)
T ss_pred             CceEEEEEEeCCCCCCCcHhh--------HHHHHHHhccccccceeeccccCCHHHH----HHHHHHHH
Confidence            378889999987532 44443        23344443  357889999999988754    44444443

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=4.1e-05  Score=63.65  Aligned_cols=108  Identities=18%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             EEEEecCCCcHHHHHHHHHccC--CCCeEEEEEcCCCC-ccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGK--HGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~--~~~~vavv~~d~g~-~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +++.|-+|+|||-|+.++.+..  ...| +.|--+|++ +..+|.                                   
T Consensus        17 iVliGDS~VGKsnLlsRftrnEF~~~Sk-sTIGvef~t~t~~vd~-----------------------------------   60 (222)
T KOG0087|consen   17 IVLIGDSAVGKSNLLSRFTRNEFSLESK-STIGVEFATRTVNVDG-----------------------------------   60 (222)
T ss_pred             EEEeCCCccchhHHHHHhcccccCcccc-cceeEEEEeeceeecC-----------------------------------
Confidence            7889999999999999999852  1112 222223332 011222                                   


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-c---
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-F---  187 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~---  187 (293)
                             ......|+||+|...-..+....     .   ...-+.++|.|.+...+.. +      ...|+.++. +   
T Consensus        61 -------k~vkaqIWDTAGQERyrAitSaY-----Y---rgAvGAllVYDITr~~Tfe-n------v~rWL~ELRdhad~  118 (222)
T KOG0087|consen   61 -------KTVKAQIWDTAGQERYRAITSAY-----Y---RGAVGALLVYDITRRQTFE-N------VERWLKELRDHADS  118 (222)
T ss_pred             -------cEEEEeeecccchhhhccccchh-----h---cccceeEEEEechhHHHHH-H------HHHHHHHHHhcCCC
Confidence                   12345799999976544333221     1   2344678899997665543 2      244555543 2   


Q ss_pred             --cCEEEEeCCCCCC
Q 022736          188 --ADVVILNKVDLVS  200 (293)
Q Consensus       188 --a~iivlNK~D~~~  200 (293)
                        +.++|-||+||..
T Consensus       119 nivimLvGNK~DL~~  133 (222)
T KOG0087|consen  119 NIVIMLVGNKSDLNH  133 (222)
T ss_pred             CeEEEEeecchhhhh
Confidence              3477779999876

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.93  E-value=1.5e-05  Score=65.35  Aligned_cols=40  Identities=23%  Similarity=0.406  Sum_probs=33.8

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .+.|+++|+|++|||||||+++|+..  ..+.+++++.++..
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~   45 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            46889999999999999999999875  44778999987543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.93  E-value=1.1e-05  Score=70.16  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++|.+|+|||||+|+|+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhh
Confidence            47899999999999999999953

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01856 YlqF YlqF

Probab=97.92  E-value=2.1e-05  Score=64.57  Aligned_cols=35  Identities=31%  Similarity=0.384  Sum_probs=26.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~   70 (293)
                      .+.++++|.+|+|||||+|+|.+    .+...+...+|+
T Consensus       115 ~~~~~~~G~~~vGKstlin~l~~----~~~~~~~~~~~~  149 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLINRLRG----KKVAKVGNKPGV  149 (171)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC----CCceeecCCCCE
Confidence            35688999999999999999994    343444555554

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=97.91  E-value=0.00014  Score=58.09  Aligned_cols=154  Identities=20%  Similarity=0.207  Sum_probs=87.8

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      .+++|.+-+|||+|++.+.+    .|.+-++ ||.  +++|..           ..++++..                  
T Consensus        11 livigdstvgkssll~~ft~----gkfaels-dpt--vgvdff-----------arlie~~p------------------   54 (213)
T KOG0091|consen   11 LIVIGDSTVGKSSLLRYFTE----GKFAELS-DPT--VGVDFF-----------ARLIELRP------------------   54 (213)
T ss_pred             EEEEcCCcccHHHHHHHHhc----CcccccC-CCc--cchHHH-----------HHHHhcCC------------------
Confidence            46789999999999999995    2333333 443  344421           01112211                  


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC----E
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD----V  190 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~----i  190 (293)
                         ..+.+.-++||+|......+.....        ...-++++|.|.++......- ..  ...++...++.|+    .
T Consensus        55 ---g~riklqlwdtagqerfrsitksyy--------rnsvgvllvyditnr~sfehv-~~--w~~ea~m~~q~P~k~VFl  120 (213)
T KOG0091|consen   55 ---GYRIKLQLWDTAGQERFRSITKSYY--------RNSVGVLLVYDITNRESFEHV-EN--WVKEAAMATQGPDKVVFL  120 (213)
T ss_pred             ---CcEEEEEEeeccchHHHHHHHHHHh--------hcccceEEEEeccchhhHHHH-HH--HHHHHHHhcCCCCeeEEE
Confidence               2345678999999887777765442        223367889999875432110 00  0122222334454    4


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +|-.|+|+.+..++  ..++.++.-+.. .              -..+.+|+++|.|+++--+.+
T Consensus       121 LVGhKsDL~SqRqV--t~EEaEklAa~h-g--------------M~FVETSak~g~NVeEAF~ml  168 (213)
T KOG0091|consen  121 LVGHKSDLQSQRQV--TAEEAEKLAASH-G--------------MAFVETSAKNGCNVEEAFDML  168 (213)
T ss_pred             Eeccccchhhhccc--cHHHHHHHHHhc-C--------------ceEEEecccCCCcHHHHHHHH
Confidence            55599999976543  344444333322 1              134678999999987655444

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=97.90  E-value=9.8e-05  Score=66.74  Aligned_cols=148  Identities=20%  Similarity=0.255  Sum_probs=84.6

Q ss_pred             CceeEEEE--EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCC-CCcchhhhhhccC--cceeec
Q 022736           30 VSVGVTVI--TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELAN--GCICCT  102 (293)
Q Consensus        30 ~~~pvi~i--~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~--gcicc~  102 (293)
                      ..+|||.|  .+.-|+|||+++..|++.  .+|.+++|++...|....-....+..+. .....+|-..+..  +|.++.
T Consensus        47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V  126 (325)
T PRK00652         47 APVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGGKLEKGPLLVDPDHTAAEVGDEPLLIARRTGAPVAV  126 (325)
T ss_pred             CCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCCCcCCCCEEeCCCCChhhhCcHHHHhccCCCceEEE
Confidence            46888988  667799999999999885  5689999999988752201111122111 1112245445544  566555


Q ss_pred             cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736          103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI  182 (293)
Q Consensus       103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~  182 (293)
                      .++... +...+.. ..+.|+||.|= |+-+.           .    ..=|.=|.++|+...... ....+...+.+-.
T Consensus       127 ~~dR~~-~~~~~~~-~~~~dviilDD-GfQh~-----------~----l~rdl~Ivl~d~~~~fgn-g~~LPaG~LREp~  187 (325)
T PRK00652        127 SPDRVA-AARALLA-AHGADIIILDD-GLQHY-----------R----LARDIEIVVVDGQRGFGN-GFLLPAGPLREPP  187 (325)
T ss_pred             cCcHHH-HHHHHHh-cCCCCEEEEcC-CccCc-----------c----cCCCeEEEEECCCCCCCC-CccCCCcCccCCh
Confidence            444443 3333332 23689999873 22111           1    112344777998654321 1111112233445


Q ss_pred             HHHhccCEEEEeCC
Q 022736          183 HQIAFADVVILNKV  196 (293)
Q Consensus       183 ~qi~~a~iivlNK~  196 (293)
                      .++..||++++|++
T Consensus       188 ~~l~rAd~vv~~~~  201 (325)
T PRK00652        188 SRLKSVDAVIVNGG  201 (325)
T ss_pred             hHhccCCEEEEeCC
Confidence            68889999999994

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=97.87  E-value=5.1e-05  Score=61.46  Aligned_cols=128  Identities=18%  Similarity=0.316  Sum_probs=67.1

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++|+|--++||||+|++.+.       +|...+.-.++++|.  +..         .+++            +.+..   
T Consensus        23 ~vivGng~VGKssmiqryCk-------gifTkdykktIgvdf--ler---------qi~v------------~~Edv---   69 (246)
T KOG4252|consen   23 FVIVGNGSVGKSSMIQRYCK-------GIFTKDYKKTIGVDF--LER---------QIKV------------LIEDV---   69 (246)
T ss_pred             EEEECCCccchHHHHHHHhc-------cccccccccccchhh--hhH---------HHHh------------hHHHH---
Confidence            56689999999999999995       233444433344332  111         0000            01111   


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccC
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFAD  189 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~  189 (293)
                             ...++||.|..+...+..+..     +.   +...++|+..+...... .      ..++...+     +.|.
T Consensus        70 -------r~mlWdtagqeEfDaItkAyy-----rg---aqa~vLVFSTTDr~SFe-a------~~~w~~kv~~e~~~IPt  127 (246)
T KOG4252|consen   70 -------RSMLWDTAGQEEFDAITKAYY-----RG---AQASVLVFSTTDRYSFE-A------TLEWYNKVQKETERIPT  127 (246)
T ss_pred             -------HHHHHHhccchhHHHHHHHHh-----cc---ccceEEEEecccHHHHH-H------HHHHHHHHHHHhccCCe
Confidence                   124789999887766654332     11   22234444333221110 0      12222222     4589


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      ++|-||+|++++...  ....++.+.+.++
T Consensus       128 V~vqNKIDlveds~~--~~~evE~lak~l~  155 (246)
T KOG4252|consen  128 VFVQNKIDLVEDSQM--DKGEVEGLAKKLH  155 (246)
T ss_pred             EEeeccchhhHhhhc--chHHHHHHHHHhh
Confidence            999999999976542  3344444555444

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=0.00013  Score=68.90  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             ccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCCCCCCCCcchHHHHHHHH-----HhhcCCCEEE
Q 022736          152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLVSPERSGDSLDELEKEI-----HEINSLAHVI  225 (293)
Q Consensus       152 ~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~~~~~~~~~~~~~~~~~l-----~~lnp~a~i~  225 (293)
                      -+|.|++++|+.-+..- ..    .++..++..-+.| .+-|++..|+....   ..+...++.|     ..+.+.|+++
T Consensus       133 IaDLVlLlIdgnfGfEM-ET----mEFLnil~~HGmPrvlgV~ThlDlfk~~---stLr~~KKrlkhRfWtEiyqGaKlF  204 (1077)
T COG5192         133 IADLVLLLIDGNFGFEM-ET----MEFLNILISHGMPRVLGVVTHLDLFKNP---STLRSIKKRLKHRFWTEIYQGAKLF  204 (1077)
T ss_pred             hhheeEEEeccccCcee-hH----HHHHHHHhhcCCCceEEEEeecccccCh---HHHHHHHHHHhhhHHHHHcCCceEE
Confidence            45789999999644321 11    0122233333444 56788999987654   2344444444     3577888876


Q ss_pred             E---eecCCCCchhhccccc
Q 022736          226 R---SVRCQVDLSEVLNCRA  242 (293)
Q Consensus       226 ~---~~~~~~~~~~i~~~sa  242 (293)
                      .   ...++.+-.+++.+|.
T Consensus       205 ylsgV~nGRYpDreilnLsR  224 (1077)
T COG5192         205 YLSGVENGRYPDREILNLSR  224 (1077)
T ss_pred             EecccccCCCCCHHHHHHHH
Confidence            4   2355555566666654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.85  E-value=1.6e-05  Score=69.12  Aligned_cols=45  Identities=27%  Similarity=0.434  Sum_probs=39.2

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +.++++|++++|+++..+.+-.+.     ++.|.|+.|||||||++.|.+
T Consensus         1 ~~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120           1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             CeeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence            468899999999998888865443     599999999999999999986

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.84  E-value=0.00018  Score=65.72  Aligned_cols=43  Identities=35%  Similarity=0.648  Sum_probs=38.0

Q ss_pred             CCCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           28 DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        28 ~~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +....++++|+|+-+||||||.+.|++.  ..|.+++++..|+|.
T Consensus        69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ  113 (398)
T COG1341          69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQ  113 (398)
T ss_pred             hccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCC
Confidence            3557899999999999999999999986  458899999999986

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=5e-05  Score=72.77  Aligned_cols=158  Identities=23%  Similarity=0.277  Sum_probs=82.3

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .++..++++|++++|||+|+.-|....+        .++..  ..++.+-..  +    .-..|...||-.-+..--++ 
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tH--------p~~~~--~~e~~lryt--D----~l~~E~eRg~sIK~~p~Tl~-  188 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTH--------PDFSK--NTEADLRYT--D----TLFYEQERGCSIKSTPVTLV-  188 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceecc--------ccccc--ccccccccc--c----cchhhHhcCceEeecceEEE-
Confidence            3677799999999999999999986421        22211  111100000  0    01122223333221110000 


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                       +.+  .+...+=+-|+||||-.+...-        ......-.|++++++|+..........     .....-|-..|.
T Consensus       189 -l~D--~~~KS~l~nilDTPGHVnF~DE--------~ta~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i  252 (971)
T KOG0468|consen  189 -LSD--SKGKSYLMNILDTPGHVNFSDE--------TTASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPI  252 (971)
T ss_pred             -Eec--CcCceeeeeeecCCCcccchHH--------HHHHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcE
Confidence             000  0012233568999997765322        233446789999999997554321110     222334456789


Q ss_pred             EEEEeCCCCCCCCCC---cchHHHHHHHHHhhcC
Q 022736          190 VVILNKVDLVSPERS---GDSLDELEKEIHEINS  220 (293)
Q Consensus       190 iivlNK~D~~~~~~~---~~~~~~~~~~l~~lnp  220 (293)
                      ++|+||+|++--+-.   ....-+++..+..+|.
T Consensus       253 ~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~  286 (971)
T KOG0468|consen  253 VVVINKVDRLILELKLPPMDAYYKLRHIIDEINN  286 (971)
T ss_pred             EEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcc
Confidence            999999995421100   1345566666777774

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.84  E-value=1.9e-05  Score=66.19  Aligned_cols=44  Identities=30%  Similarity=0.466  Sum_probs=38.4

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++.|+.++|+..+.+.....-     +++|+|++|||||||++.|-.
T Consensus         2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126           2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            58899999999999998876544     599999999999999999964

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=97.82  E-value=0.00023  Score=59.12  Aligned_cols=148  Identities=19%  Similarity=0.232  Sum_probs=76.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchh-----hhhcCCCCcchhhhhhccCcceee----c
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERA-----MINEGEGGALVEEWVELANGCICC----T  102 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~-----~~~~~~~~~~~~~~~~l~~gcicc----~  102 (293)
                      |.+..+..|+||||+.-.|...  ..|+++.++..|+.. ......     .+..+..... .....+..+-++-    .
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQA-PNLSILFGVYDILREGLENAN-AILKNFESQDIYQGEEYL   78 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS-HHHHHHTTCHHHHTTSSHGHH-CHHESCCHHHHHHHCHCH
T ss_pred             CEEEcCCCCccHHHHHHHHHhccccccccccccccCccc-ccHHHHhcchhhccccceehh-hhhhccchhhhhhhhhhh
Confidence            4678899999999999988763  469999999999865 111110     0010000000 0000000000000    0


Q ss_pred             cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736          103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI  182 (293)
Q Consensus       103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~  182 (293)
                      ....+.+.+..+..  ..+|+||||||+..... ..         ......|.+|.++++....  ....   ..+...+
T Consensus        79 ~~~~l~~~l~~l~~--~~yD~iiiD~~~~~~~~-~~---------~~l~~ad~viv~~~~~~~~--i~~~---~~~~~~l  141 (195)
T PF01656_consen   79 DPELLREILESLIK--SDYDYIIIDTPPGLSDP-VR---------NALAAADYVIVPIEPDPSS--IEGA---ERLIELL  141 (195)
T ss_dssp             HHHHHHHHHHHHHH--TTSSEEEEEECSSSSHH-HH---------HHHHTSSEEEEEEESSHHH--HHHH---HHHHHHH
T ss_pred             HHHHHHHHHHHhhh--ccccceeecccccccHH-HH---------HHHHhCceeeeecCCcHHH--HHHH---HHHHHHH
Confidence            01123333333332  23999999999855433 11         1224577889999887543  1111   0123334


Q ss_pred             HHHhc---cCEEEEeCCCCCC
Q 022736          183 HQIAF---ADVVILNKVDLVS  200 (293)
Q Consensus       183 ~qi~~---a~iivlNK~D~~~  200 (293)
                      +....   ...+|+||++.-+
T Consensus       142 ~~~~~~~~~~~vv~N~v~~~~  162 (195)
T PF01656_consen  142 KRLGKKLKIIGVVINRVDPGN  162 (195)
T ss_dssp             HHHTHTEEEEEEEEEEETSCC
T ss_pred             HHhccccceEEEEEeeeCCCc
Confidence            44432   3488999998654

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.81  E-value=2.5e-05  Score=61.97  Aligned_cols=37  Identities=35%  Similarity=0.600  Sum_probs=27.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEE-EcCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI-LNEFG   69 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv-~~d~g   69 (293)
                      |++.|+|+.|||||||+..|++.  ..|.+++++ ..+.|
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g   40 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHG   40 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCC
Confidence            79999999999999999999885  468888844 44553

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.81  E-value=2.6e-05  Score=67.48  Aligned_cols=46  Identities=33%  Similarity=0.481  Sum_probs=39.1

Q ss_pred             CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+.++++|+++.|.+.+.+.+....     ++.|+|+.|||||||++.++.
T Consensus         2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121           2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3579999999999976677765443     689999999999999999996

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.79  E-value=3.3e-05  Score=68.02  Aligned_cols=40  Identities=30%  Similarity=0.275  Sum_probs=31.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~   70 (293)
                      .-+-+.|+|.||+|||||+|++.+. ....+.+.+-+++|.
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGV  182 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGV  182 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCc
Confidence            4456888999999999999999774 223478888888885

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=97.77  E-value=6.8e-05  Score=69.18  Aligned_cols=40  Identities=25%  Similarity=0.429  Sum_probs=34.8

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .+.|++.|+|++|||||||+.+|++.  ..|.+++++.++-.
T Consensus       203 ~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h  244 (366)
T PRK14489        203 GAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH  244 (366)
T ss_pred             CCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence            36889999999999999999999985  45889999997654

>cd01858 NGP_1 NGP-1

Probab=97.75  E-value=3e-05  Score=62.66  Aligned_cols=88  Identities=18%  Similarity=0.126  Sum_probs=54.1

Q ss_pred             ccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736          148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI  225 (293)
Q Consensus       148 ~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~  225 (293)
                      .....+|.+++|+|+.......+.     .....+....  .+.++|+||+|+.+++       .+...+..+....   
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~~-----~i~~~l~~~~~~~p~ilVlNKiDl~~~~-------~~~~~~~~~~~~~---   68 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRCK-----HVEEYLKKEKPHKHLIFVLNKCDLVPTW-------VTARWVKILSKEY---   68 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccCH-----HHHHHHHhccCCCCEEEEEEchhcCCHH-------HHHHHHHHHhcCC---
Confidence            345678999999999864322111     0222232222  5789999999998543       2333343332211   


Q ss_pred             EeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          226 RSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       226 ~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                             ++. ++++|+..+.|.++|.+++.+.
T Consensus        69 -------~~~-~~~iSa~~~~~~~~L~~~l~~~   93 (157)
T cd01858          69 -------PTI-AFHASINNPFGKGSLIQLLRQF   93 (157)
T ss_pred             -------cEE-EEEeeccccccHHHHHHHHHHH
Confidence                   112 4788999999999888888654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK04296 thymidine kinase; Provisional

Probab=97.70  E-value=0.00051  Score=57.39  Aligned_cols=91  Identities=18%  Similarity=0.316  Sum_probs=51.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +++++|++|+||||++-.++..  ..+.++.++...+.++.+ .......  .+..      +  .++......++...+
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~--lg~~------~--~~~~~~~~~~~~~~~   72 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSR--IGLS------R--EAIPVSSDTDIFELI   72 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecC--CCCc------c--cceEeCChHHHHHHH
Confidence            6889999999999999888764  457888887543332111 1111111  1110      1  112223333444444


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHH
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLA  138 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~  138 (293)
                      ..   ..+++++|+||-.++.+...+.
T Consensus        73 ~~---~~~~~dvviIDEaq~l~~~~v~   96 (190)
T PRK04296         73 EE---EGEKIDCVLIDEAQFLDKEQVV   96 (190)
T ss_pred             Hh---hCCCCCEEEEEccccCCHHHHH
Confidence            43   2457899999999876544343

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.70  E-value=6.1e-05  Score=64.14  Aligned_cols=49  Identities=16%  Similarity=0.211  Sum_probs=39.0

Q ss_pred             CCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++.+-.++++++++++++++.+....+-     +++|+|++|||||||++.|..
T Consensus         6 ~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   59 (214)
T PRK13543          6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG   59 (214)
T ss_pred             CCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            3444468999999999877666654333     589999999999999999985

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=97.68  E-value=0.0006  Score=60.01  Aligned_cols=37  Identities=30%  Similarity=0.285  Sum_probs=30.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +|+|+|.-|+||||+.-.|...  ..|+|+.++-.|++.
T Consensus         2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~   40 (267)
T cd02032           2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH   40 (267)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4677899999999988887653  569999999999864

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.68  E-value=0.00074  Score=53.41  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=65.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +.+..|..|+||||+.-.+...  ..|.++.++..|++. ..                                      
T Consensus         2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~-~~--------------------------------------   42 (139)
T cd02038           2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL-AN--------------------------------------   42 (139)
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC-CC--------------------------------------
Confidence            3457889999999998888663  568888888888653 00                                      


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccC
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFAD  189 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~  189 (293)
                             -.+|++|||+|+.......          .....+|.++.+++++...-.....     ....+.+.  ....
T Consensus        43 -------~~yd~VIiD~p~~~~~~~~----------~~l~~aD~vviv~~~~~~s~~~~~~-----~l~~l~~~~~~~~~  100 (139)
T cd02038          43 -------LDYDYIIIDTGAGISDNVL----------DFFLAADEVIVVTTPEPTSITDAYA-----LIKKLAKQLRVLNF  100 (139)
T ss_pred             -------CCCCEEEEECCCCCCHHHH----------HHHHhCCeEEEEcCCChhHHHHHHH-----HHHHHHHhcCCCCE
Confidence                   1178999999985543221          1224568899999987543211000     11122211  1234


Q ss_pred             EEEEeCCCCC
Q 022736          190 VVILNKVDLV  199 (293)
Q Consensus       190 iivlNK~D~~  199 (293)
                      .+|+|+++..
T Consensus       101 ~lVvN~~~~~  110 (139)
T cd02038         101 RVVVNRAESP  110 (139)
T ss_pred             EEEEeCCCCH
Confidence            6999998743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>CHL00175 minD septum-site determining protein; Validated

Probab=97.67  E-value=0.0013  Score=58.38  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=29.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      -+.++.|..|+||||+.-.|...  ..|+++.++..|++
T Consensus        17 vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~   55 (281)
T CHL00175         17 IIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG   55 (281)
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            34445669999999999887653  46899999999985

>PRK00098 GTPase RsgA; Reviewed

Probab=97.67  E-value=6.3e-05  Score=67.44  Aligned_cols=23  Identities=48%  Similarity=0.622  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++|++|+|||||+|.|+..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~  187 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPD  187 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCC
Confidence            36889999999999999999953

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.0002  Score=55.67  Aligned_cols=149  Identities=19%  Similarity=0.187  Sum_probs=81.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +.-++|+|..|+|||-|+..+.+...- .-...+--+||+      +             .+++.               
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgt------r-------------iievs---------------   56 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT------R-------------IIEVS---------------   56 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecce------e-------------EEEec---------------
Confidence            455788999999999999999853100 000112224443      1             11111               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc--
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA--  188 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a--  188 (293)
                             ....+.-|+||.|......+.+...        ....+.+.|.|......+... +   .+..-.+.+..|  
T Consensus        57 -------gqkiklqiwdtagqerfravtrsyy--------rgaagalmvyditrrstynhl-s---swl~dar~ltnpnt  117 (215)
T KOG0097|consen   57 -------GQKIKLQIWDTAGQERFRAVTRSYY--------RGAAGALMVYDITRRSTYNHL-S---SWLTDARNLTNPNT  117 (215)
T ss_pred             -------CcEEEEEEeecccHHHHHHHHHHHh--------ccccceeEEEEehhhhhhhhH-H---HHHhhhhccCCCce
Confidence                   1234567999999876666655432        234466888888765544221 0   111112334444  


Q ss_pred             -CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736          189 -DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       189 -~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                       .+++-||.|+-++..+  ..++.+.... -|.              --++..|+++|+++++
T Consensus       118 ~i~lignkadle~qrdv--~yeeak~fae-eng--------------l~fle~saktg~nved  163 (215)
T KOG0097|consen  118 VIFLIGNKADLESQRDV--TYEEAKEFAE-ENG--------------LMFLEASAKTGQNVED  163 (215)
T ss_pred             EEEEecchhhhhhcccC--cHHHHHHHHh-hcC--------------eEEEEecccccCcHHH
Confidence             4556699998765432  3333332221 121              1245789999999863

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.65  E-value=5.2e-05  Score=64.23  Aligned_cols=46  Identities=22%  Similarity=0.205  Sum_probs=38.1

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      |++++++++++|+++..+....+-     +++|+|+.|||||||++.|...
T Consensus         1 m~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (207)
T PRK13539          1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL   51 (207)
T ss_pred             CEEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999876666655443     5899999999999999999953

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.65  E-value=8e-05  Score=61.34  Aligned_cols=45  Identities=31%  Similarity=0.496  Sum_probs=35.8

Q ss_pred             eEEEccccccccCcc-cCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSH-ENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~-~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++.|++.+ .+.+..+     -++.++|++|||||||++-|...
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~   51 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE   51 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh
Confidence            378899999998875 4444332     35889999999999999999875

>cd01859 MJ1464 MJ1464

Probab=97.64  E-value=6.6e-05  Score=60.47  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..++++|.+|+||||++|+|..
T Consensus       102 ~~~~~ig~~~~Gkssl~~~l~~  123 (156)
T cd01859         102 GKVGVVGYPNVGKSSIINALKG  123 (156)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3458999999999999999993

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.64  E-value=0.00016  Score=61.98  Aligned_cols=93  Identities=23%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .-++++|||.+|||||+..+...    +-...+.+|.+-..+.+              +++                   
T Consensus        63 aRValIGfPSVGKStlLs~iT~T----~SeaA~yeFTTLtcIpG--------------vi~-------------------  105 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITST----HSEAASYEFTTLTCIPG--------------VIH-------------------  105 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcc----hhhhhceeeeEEEeecc--------------eEE-------------------
Confidence            34889999999999999999842    22222333332000000              011                   


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ  168 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~  168 (293)
                           .++..+-++|.||+.+.+....... .........+|.|+.|+||+....+
T Consensus       106 -----y~ga~IQllDLPGIieGAsqgkGRG-RQviavArtaDlilMvLDatk~e~q  155 (364)
T KOG1486|consen  106 -----YNGANIQLLDLPGIIEGASQGKGRG-RQVIAVARTADLILMVLDATKSEDQ  155 (364)
T ss_pred             -----ecCceEEEecCcccccccccCCCCC-ceEEEEeecccEEEEEecCCcchhH
Confidence                 2345577999999887665553322 2233445678999999999876543

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.63  E-value=4.5e-05  Score=67.85  Aligned_cols=103  Identities=21%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .-++|+|.||+|||||+|.|.+.    +.+ ..|-|=+|+......+.                 |.|  .|  + +.|.
T Consensus        21 lkiGIVGlPNvGKST~fnalT~~----~a~-~~NfPF~TIdPn~a~V~-----------------v~d--~R--f-d~l~   73 (391)
T KOG1491|consen   21 LKIGIVGLPNVGKSTFFNALTKS----KAG-AANFPFCTIDPNEARVE-----------------VPD--SR--F-DLLC   73 (391)
T ss_pred             ceeeEeeCCCCchHHHHHHHhcC----CCC-ccCCCcceeccccceee-----------------cCc--hH--H-HHHH
Confidence            37899999999999999999964    222 22222211222211111                 111  11  1 2222


Q ss_pred             HHHhhc--CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          113 QLVQRK--ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       113 ~l~~~~--~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      .+....  -+..+-+.|.+|+...+...+.+. ...+.+...+|.++.||++.
T Consensus        74 ~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLG-N~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   74 PIYGPKSKVPAFLTVYDIAGLVKGASAGEGLG-NKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             HhcCCcceeeeeEEEEeecccccCcccCcCch-HHHHHhhhhccceeEEEEec
Confidence            222111  123467899999876554443332 44567778899999999875

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=97.63  E-value=0.00023  Score=59.84  Aligned_cols=22  Identities=41%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      =++++|.+|+|||+|..+++..
T Consensus         5 kvvvlG~~gVGKSal~~qf~~~   26 (196)
T KOG0395|consen    5 KVVVLGAGGVGKSALTIQFLTG   26 (196)
T ss_pred             EEEEECCCCCCcchheeeeccc
Confidence            3677999999999999999853

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.62  E-value=5.6e-05  Score=65.43  Aligned_cols=46  Identities=26%  Similarity=0.456  Sum_probs=37.8

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      |.+++++++++|+++..+....+-     +++|+|++|||||||++.|...
T Consensus         1 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296           1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             CEEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            568899999999876666654333     6999999999999999999853

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=97.62  E-value=0.00017  Score=70.58  Aligned_cols=40  Identities=28%  Similarity=0.491  Sum_probs=34.8

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCC
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~   68 (293)
                      .+++|++.|+|+.|||||||+.+|+..  ..|.++++|.++-
T Consensus         7 ~~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~   48 (597)
T PRK14491          7 PLSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH   48 (597)
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence            456899999999999999999999986  4588999999843

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.62  E-value=0.00018  Score=61.61  Aligned_cols=64  Identities=20%  Similarity=0.258  Sum_probs=51.4

Q ss_pred             CCCceEEEccccccccCcccCCCCceeE-----EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736            7 DPPLAVRIDETTHEFSNSHENDDVSVGV-----TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv-----i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      .++++++++++...+..++.+..-...|     .+|+|+.|||||||++-+...  +....+.++-.-+|.
T Consensus        27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~   97 (257)
T COG1119          27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGK   97 (257)
T ss_pred             CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccC
Confidence            3446899999999999999999887776     899999999999999999875  223455555556665

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.61  E-value=0.0002  Score=61.49  Aligned_cols=36  Identities=31%  Similarity=0.516  Sum_probs=30.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d   67 (293)
                      ++++.|+|+.||||||++.+|+..  ..|.+++++.+.
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~   38 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHT   38 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            368999999999999999999875  458899999753

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=97.61  E-value=0.0012  Score=55.55  Aligned_cols=39  Identities=28%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             eeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           32 VGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        32 ~pvi~i~-G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      ..+|.|+ +..|+||||+...|...  ..|+++.+|..|+..
T Consensus        17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~   58 (204)
T TIGR01007        17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN   58 (204)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4555555 67799999999988764  568999999888754

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=97.61  E-value=0.0013  Score=56.94  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=29.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      +.++.+.-|+||||+.-.|...  ..|+++.++-.|++
T Consensus         3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   40 (251)
T TIGR01969         3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADIT   40 (251)
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4566788999999999887653  45889999999984

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.60  E-value=8.5e-05  Score=66.24  Aligned_cols=23  Identities=43%  Similarity=0.644  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++|++|+|||||+|.|+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~  184 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPD  184 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhch
Confidence            57999999999999999999953

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=97.60  E-value=0.00086  Score=57.25  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=31.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +++++|.+|+||||+...+...  ..|+++.++..|+..
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~   39 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH   39 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence            4688999999999999988763  568999999998875

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.59  E-value=6.7e-05  Score=63.76  Aligned_cols=45  Identities=24%  Similarity=0.437  Sum_probs=37.4

Q ss_pred             ceEEEccccccc-cCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~-~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      |.++++|+.+.| +....+.+.++-     +++|+|++|||||||++.|-+
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence            689999999999 666666665444     499999999999999999974

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.59  E-value=7.4e-05  Score=65.20  Aligned_cols=47  Identities=15%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             CCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++| ++++++++.|+++..+....+-     +++|+|++|||||||++.|..
T Consensus         2 ~~~~-l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255          2 AKKI-ITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             Ccce-EEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3444 7899999999876666654433     699999999999999999984

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.58  E-value=7e-05  Score=64.94  Aligned_cols=46  Identities=20%  Similarity=0.296  Sum_probs=37.8

Q ss_pred             ceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      |.+++++++++|++++.+.....     -+++|+|+.|||||||++.|...
T Consensus         1 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124          1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             CEEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            57889999999987766665433     36999999999999999999853

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.58  E-value=9.9e-05  Score=65.07  Aligned_cols=50  Identities=24%  Similarity=0.372  Sum_probs=39.4

Q ss_pred             CCCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++-++++++++++|++...+....+-     +++|+|++|||||||++.|..
T Consensus        15 ~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   69 (268)
T PRK14248         15 PEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR   69 (268)
T ss_pred             CCCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            34444568999999999876666654333     689999999999999999984

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.58  E-value=0.0011  Score=49.94  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=51.9

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      .++.+..|+||||+...|...  .. |+++.++..|+..                                         
T Consensus         3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~-----------------------------------------   41 (106)
T cd03111           3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF-----------------------------------------   41 (106)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC-----------------------------------------
Confidence            456788999999999888764  34 8899998877763                                         


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL  166 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~  166 (293)
                              .-|++|||||+........          .....|.++.+++++...
T Consensus        42 --------~~D~IIiDtpp~~~~~~~~----------~l~~aD~vlvvv~~~~~s   78 (106)
T cd03111          42 --------GDDYVVVDLGRSLDEVSLA----------ALDQADRVFLVTQQDLPS   78 (106)
T ss_pred             --------CCCEEEEeCCCCcCHHHHH----------HHHHcCeEEEEecCChHH
Confidence                    0179999999966532111          124567889999887543

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=97.58  E-value=0.0012  Score=56.15  Aligned_cols=37  Identities=24%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +|.|+|..|+||||+.-.|...  ..|+++.++-.|++.
T Consensus         2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~   40 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA   40 (212)
T ss_pred             EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            5778899999999988777653  458999999999874

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.57  E-value=9.3e-05  Score=60.02  Aligned_cols=38  Identities=32%  Similarity=0.566  Sum_probs=32.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      ++++.|+|++|||||||+++|+..  ..|.+++++.++..
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~   40 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH   40 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence            368999999999999999999985  45788999987654

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.56  E-value=0.00012  Score=77.03  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=21.7

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYI   52 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~l   52 (293)
                      -...|-++|+|++||||||+++.-
T Consensus       108 lY~LPWYlviG~~gsGKtt~l~~s  131 (1169)
T TIGR03348       108 LYDLPWYLVIGPPGSGKTTLLQNS  131 (1169)
T ss_pred             hhcCCCEEEECCCCCchhHHHHhC
Confidence            346899999999999999999987

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.53  E-value=8.4e-05  Score=65.18  Aligned_cols=54  Identities=22%  Similarity=0.252  Sum_probs=43.2

Q ss_pred             CCCCCCCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736            1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ||.-+-.+|| +.+++++++|+.++.+....+-     +++|+|++|||||||++.|...
T Consensus         1 ~~~~~~~~~~-i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~   59 (257)
T PRK14246          1 MEAGKSAEDV-FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL   59 (257)
T ss_pred             CCCchhhhhh-eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4555555666 8999999999988877755433     6999999999999999999853

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.53  E-value=9.7e-05  Score=66.38  Aligned_cols=47  Identities=23%  Similarity=0.321  Sum_probs=38.8

Q ss_pred             CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.+++++++++|++...+....+-     +++|+|+.|||||||++.|...
T Consensus         2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl   53 (303)
T TIGR01288         2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM   53 (303)
T ss_pred             CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999877666654333     6999999999999999999863

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=97.52  E-value=9.3e-05  Score=65.33  Aligned_cols=49  Identities=27%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             CCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++.+++++++++.|+++..+....+-     +++|+|+.|||||||++.|...
T Consensus         3 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (269)
T PRK11831          3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ   56 (269)
T ss_pred             CccceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            344468999999999876666544333     6999999999999999999853

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=97.52  E-value=0.0019  Score=56.88  Aligned_cols=36  Identities=31%  Similarity=0.257  Sum_probs=29.3

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      |.+.|--|+||||+.-.|...  ..|+|+.++-.|++.
T Consensus         3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~   40 (268)
T TIGR01281         3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH   40 (268)
T ss_pred             EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence            566699999999987776542  469999999999874

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=97.52  E-value=0.0019  Score=57.69  Aligned_cols=36  Identities=28%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +++.|--|+||||+.-.|...  ..|+|+.+|-.|++.
T Consensus         3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~   40 (290)
T CHL00072          3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH   40 (290)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            788999999999998887653  569999999999885

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.52  E-value=0.00012  Score=63.82  Aligned_cols=46  Identities=24%  Similarity=0.363  Sum_probs=37.0

Q ss_pred             CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      |=.+++.+++++|++++.+....+-     +++|+|+.|||||||++.|..
T Consensus         4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14242          4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR   54 (253)
T ss_pred             CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3348899999999876666654333     699999999999999999984

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.50  E-value=0.00015  Score=61.50  Aligned_cols=39  Identities=28%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d   67 (293)
                      +.+..+|+|+|++|||||||.+.|.+...+..+.++..|
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D   41 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD   41 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence            346789999999999999999999876545567777655

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.49  E-value=0.00012  Score=64.12  Aligned_cols=46  Identities=15%  Similarity=0.312  Sum_probs=37.2

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -.+++++++++|+++..+....+-     +++|+|+.|||||||++.|...
T Consensus        11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl   61 (257)
T PRK11247         11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL   61 (257)
T ss_pred             CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            348899999999876666654333     6999999999999999999863

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.00032  Score=64.50  Aligned_cols=83  Identities=23%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +.-+-|+||||-.+.+        ++.++...-+|..|.|+|+..+.......     ..+..+.-..|.+-.+||.|..
T Consensus        80 ~~~iNLLDTPGHeDFS--------EDTYRtLtAvDsAvMVIDaAKGiE~qT~K-----LfeVcrlR~iPI~TFiNKlDR~  146 (528)
T COG4108          80 DCLVNLLDTPGHEDFS--------EDTYRTLTAVDSAVMVIDAAKGIEPQTLK-----LFEVCRLRDIPIFTFINKLDRE  146 (528)
T ss_pred             CeEEeccCCCCccccc--------hhHHHHHHhhheeeEEEecccCccHHHHH-----HHHHHhhcCCceEEEeeccccc
Confidence            4456799999977653        23344556789999999998776544321     3445566678999999999987


Q ss_pred             CCCCCcchHHHHHHHHH
Q 022736          200 SPERSGDSLDELEKEIH  216 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~  216 (293)
                      ..+-. +.++++++.|.
T Consensus       147 ~rdP~-ELLdEiE~~L~  162 (528)
T COG4108         147 GRDPL-ELLDEIEEELG  162 (528)
T ss_pred             cCChH-HHHHHHHHHhC
Confidence            65432 34555555553

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.49  E-value=0.00012  Score=62.29  Aligned_cols=41  Identities=17%  Similarity=0.351  Sum_probs=33.8

Q ss_pred             EEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHH
Q 022736           12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll   53 (293)
                      +++.|+. +|.....+......+++|+|+.||||||+++.+.
T Consensus         6 l~l~nfk-~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274           6 LVLENFK-SYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             EEEECcc-cCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHH
Confidence            5566665 7777777766666899999999999999999987

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.48  E-value=0.00015  Score=62.26  Aligned_cols=45  Identities=22%  Similarity=0.330  Sum_probs=37.5

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+++++++++|+.+..+....+-     +++|+|+.|||||||++.|..
T Consensus         6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (225)
T PRK10247          6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS   55 (225)
T ss_pred             ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            368899999999876666655443     599999999999999999985

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.48  E-value=0.00011  Score=63.97  Aligned_cols=45  Identities=18%  Similarity=0.309  Sum_probs=37.1

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      |.+++.++++.|+.+..+.....-     +++|+|++|||||||++.|..
T Consensus         1 ~~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (246)
T PRK14269          1 MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNR   50 (246)
T ss_pred             CceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            568899999999876666654333     699999999999999999985

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=97.47  E-value=0.00011  Score=64.21  Aligned_cols=45  Identities=27%  Similarity=0.452  Sum_probs=37.1

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      |.+++.+++++|+++..+.....-     +++|+|+.|||||||++.|..
T Consensus         1 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   50 (255)
T PRK11231          1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFAR   50 (255)
T ss_pred             CEEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            568899999999876666654333     699999999999999999985

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.46  E-value=0.0001  Score=56.50  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +|+|+|++||||||+.+.|.+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

...

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00015  Score=64.08  Aligned_cols=48  Identities=21%  Similarity=0.324  Sum_probs=39.3

Q ss_pred             CCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++..+++++++++|+.+..+....+-     +++|+|++|||||||++.|..
T Consensus         9 ~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   61 (269)
T PRK14259          9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR   61 (269)
T ss_pred             CCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            345679999999999877666655443     589999999999999999984

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00016  Score=63.34  Aligned_cols=44  Identities=23%  Similarity=0.413  Sum_probs=36.4

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++++++.|++++.+.....-     +++|+|++|||||||++.|..
T Consensus        12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   60 (258)
T PRK14268         12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR   60 (258)
T ss_pred             eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            68899999999876666554333     599999999999999999985

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=97.45  E-value=0.00073  Score=60.78  Aligned_cols=149  Identities=21%  Similarity=0.254  Sum_probs=82.1

Q ss_pred             CceeEEEEEe--cCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCC-CcchhhhhhccC--cceeec
Q 022736           30 VSVGVTVITG--FLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEG-GALVEEWVELAN--GCICCT  102 (293)
Q Consensus        30 ~~~pvi~i~G--~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~-~~~~~~~~~l~~--gcicc~  102 (293)
                      ..+|||.|..  .-|+|||.++..|.+.  .+|.+++|++...|....-....+..+.+ ....+|-..+..  +|..+.
T Consensus        26 ~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V  105 (311)
T TIGR00682        26 APVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVA  105 (311)
T ss_pred             CCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEE
Confidence            4678877422  5699999999999885  67899999998887522111112222111 011234444433  443333


Q ss_pred             cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736          103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI  182 (293)
Q Consensus       103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~  182 (293)
                      .++... +...+.. ..+.|+||.|= |+-+.           .    ..=|.=|.++|+...... ....+...+.+-.
T Consensus       106 ~~dR~~-a~~~~~~-~~~~dviilDD-GfQh~-----------~----l~rD~~IvlvD~~~~fgn-g~lLPaGpLREp~  166 (311)
T TIGR00682       106 SKDRKD-AILLILE-QLDPDVIILDD-GLQHR-----------K----LHRDVEIVVVDGQRPFGN-GFLLPAGPLREFP  166 (311)
T ss_pred             eChHHH-HHHHHHh-cCCCCEEEECC-CCcCc-----------c----ccCCeEEEEECCCCCCCC-CcccCCcCCCCCh
Confidence            333332 3333332 34689999883 22211           1    122445888998764321 1111111233446


Q ss_pred             HHHhccCEEEEeCCC
Q 022736          183 HQIAFADVVILNKVD  197 (293)
Q Consensus       183 ~qi~~a~iivlNK~D  197 (293)
                      .++..+|++|+|+.+
T Consensus       167 ~~l~raD~vvv~~~~  181 (311)
T TIGR00682       167 KRLKSADAVIVNGGE  181 (311)
T ss_pred             hhhhhCCEEEEeCCc
Confidence            778899999999985

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.44  E-value=0.00015  Score=58.49  Aligned_cols=80  Identities=21%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             ccEEEEEcccchHHHHhhhcccCCch-HHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCC
Q 022736          154 DSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQV  232 (293)
Q Consensus       154 d~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~  232 (293)
                      |.+++|+|+..........     .. ..+.....+.++|+||+|+++.+    ...++...++...             
T Consensus         1 Dvvl~VvD~~~p~~~~~~~-----i~~~~~~~~~~p~IiVlNK~Dl~~~~----~~~~~~~~~~~~~-------------   58 (155)
T cd01849           1 DVILEVLDARDPLGTRSPD-----IERVLIKEKGKKLILVLNKADLVPKE----VLRKWLAYLRHSY-------------   58 (155)
T ss_pred             CEEEEEEeccCCccccCHH-----HHHHHHhcCCCCEEEEEechhcCCHH----HHHHHHHHHHhhC-------------
Confidence            5789999997543221110     11 12233356899999999997642    1122222222111             


Q ss_pred             CchhhcccccCCcchhhhhhhhhh
Q 022736          233 DLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       233 ~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                       ...++.+|+.++.|+++|.+.+.
T Consensus        59 -~~~ii~vSa~~~~gi~~L~~~i~   81 (155)
T cd01849          59 -PTIPFKISATNGQGIEKKESAFT   81 (155)
T ss_pred             -CceEEEEeccCCcChhhHHHHHH
Confidence             13467899999999998888764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=97.43  E-value=0.00042  Score=54.81  Aligned_cols=74  Identities=19%  Similarity=0.140  Sum_probs=41.8

Q ss_pred             CCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC-chHHHHHHhccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS-YPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~-~~~~~~qi~~a~iivlNK~D~  198 (293)
                      -++.|-||.|+.+- .++-...+        ...|..++|.+..+......- ..+.. +...-..-+.|.+++-||+|+
T Consensus        60 E~l~lyDTaGlq~~~~eLprhy~--------q~aDafVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr  130 (198)
T KOG3883|consen   60 EQLRLYDTAGLQGGQQELPRHYF--------QFADAFVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDR  130 (198)
T ss_pred             heEEEeecccccCchhhhhHhHh--------ccCceEEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhc
Confidence            35789999997764 33333222        346778888887765432211 00000 001112335578888999999


Q ss_pred             CCCCC
Q 022736          199 VSPER  203 (293)
Q Consensus       199 ~~~~~  203 (293)
                      .++.+
T Consensus       131 ~~p~~  135 (198)
T KOG3883|consen  131 AEPRE  135 (198)
T ss_pred             ccchh
Confidence            86654

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.43  E-value=0.00016  Score=63.06  Aligned_cols=44  Identities=25%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++++++|+.++.+.....-     +++|+|++|||||||++.|..
T Consensus         4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   52 (253)
T PRK14267          4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNR   52 (253)
T ss_pred             eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            68899999999876666654333     689999999999999999985

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.42  E-value=0.00014  Score=63.79  Aligned_cols=44  Identities=25%  Similarity=0.380  Sum_probs=36.1

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++.|+.++.+....+-     +++|+|++|||||||++.|..
T Consensus        12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   60 (259)
T PRK14274         12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNL   60 (259)
T ss_pred             eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            68999999999876666543332     699999999999999999984

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.00019  Score=60.20  Aligned_cols=47  Identities=26%  Similarity=0.408  Sum_probs=39.8

Q ss_pred             CCceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736            8 PPLAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ....+++.++.+.|++.+.+....+     .|++++||+|+|||||++.|=+
T Consensus         4 ~~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117           4 KIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             ccceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence            4457899999999999999986543     3699999999999999988855

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.42  E-value=0.0002  Score=63.53  Aligned_cols=49  Identities=29%  Similarity=0.375  Sum_probs=39.9

Q ss_pred             CCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++...+++.+++++|+.++.+....+-     +++|+|++|||||||++.|..
T Consensus        16 ~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G   69 (276)
T PRK14271         16 DAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNR   69 (276)
T ss_pred             cccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3445678999999999887766654443     599999999999999999985

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00016  Score=62.70  Aligned_cols=45  Identities=31%  Similarity=0.343  Sum_probs=36.7

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      |.+++++++++|++++.+....+-     +++|+|++|||||||++.|..
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (241)
T PRK14250          2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR   51 (241)
T ss_pred             ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            458899999999776666654433     699999999999999999985

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00049  Score=58.84  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=37.6

Q ss_pred             ceEEEccccccccCcc----cCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSH----ENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~----~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++|+++.|+...    .+.+..+-     +++|+|.+|||||||.+.|+.
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence            5789999999999888    55555444     489999999999999999983

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00019  Score=62.57  Aligned_cols=46  Identities=17%  Similarity=0.339  Sum_probs=37.0

Q ss_pred             CceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736            9 PLAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +.+++++++++.|+++..+....+     -+++|+|+.|||||||++.|..
T Consensus         2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   52 (251)
T PRK14270          2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNR   52 (251)
T ss_pred             ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            456789999999887665554333     3699999999999999999995

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.40  E-value=0.00015  Score=65.50  Aligned_cols=44  Identities=27%  Similarity=0.424  Sum_probs=35.7

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++|++++|++...+....+-     +++++|++|+|||||++.+..
T Consensus         3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839           3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999985444443333     699999999999999999974

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.39  E-value=0.00015  Score=61.49  Aligned_cols=43  Identities=23%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|++++.+....+-     +++|+|+.|||||||++.|..
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG   48 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3577888888776666554333     699999999999999999985

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=97.39  E-value=0.0043  Score=54.65  Aligned_cols=38  Identities=29%  Similarity=0.234  Sum_probs=31.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      .+|.|.|--|+||||+.-.|...  ..|+++.+|-.|++.
T Consensus         3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~   42 (270)
T PRK13185          3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKH   42 (270)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCc
Confidence            46777799999999988887653  569999999999864

>cd01859 MJ1464 MJ1464

Probab=97.39  E-value=0.00014  Score=58.53  Aligned_cols=83  Identities=22%  Similarity=0.282  Sum_probs=50.0

Q ss_pred             ccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCC
Q 022736          152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ  231 (293)
Q Consensus       152 ~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~  231 (293)
                      ++|.+++|+|+.......+.     ...........+.++|+||+|+.+..    ....+. .+... .           
T Consensus        12 ~aD~vl~V~D~~~~~~~~~~-----~l~~~~~~~~~p~iiv~NK~Dl~~~~----~~~~~~-~~~~~-~-----------   69 (156)
T cd01859          12 ESDVVLEVLDARDPELTRSR-----KLERYVLELGKKLLIVLNKADLVPKE----VLEKWK-SIKES-E-----------   69 (156)
T ss_pred             hCCEEEEEeeCCCCcccCCH-----HHHHHHHhCCCcEEEEEEhHHhCCHH----HHHHHH-HHHHh-C-----------
Confidence            48999999999753321110     01222233357889999999997532    112211 11110 0           


Q ss_pred             CCchhhcccccCCcchhhhhhhhhhhh
Q 022736          232 VDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       232 ~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                        ..+++.+|++++.|+++|...+.+.
T Consensus        70 --~~~~~~iSa~~~~gi~~L~~~l~~~   94 (156)
T cd01859          70 --GIPVVYVSAKERLGTKILRRTIKEL   94 (156)
T ss_pred             --CCcEEEEEccccccHHHHHHHHHHH
Confidence              1246889999999999998887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.00021  Score=62.76  Aligned_cols=45  Identities=22%  Similarity=0.361  Sum_probs=36.8

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      -.+++++++++|++++.+....+-     +++|+|++|||||||++.|..
T Consensus        12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   61 (260)
T PRK10744         12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR   61 (260)
T ss_pred             ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358899999999876666654333     599999999999999999984

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=97.39  E-value=0.00027  Score=56.12  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVD  197 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D  197 (293)
                      +.+.-|+||+|......+...+        ....+++++|.|.+.......- ..  ...+....+  +.+.+||-||+|
T Consensus        61 ra~L~IWDTAGQErfHALGPIY--------YRgSnGalLVyDITDrdSFqKV-Kn--WV~Elr~mlGnei~l~IVGNKiD  129 (218)
T KOG0088|consen   61 RADLHIWDTAGQERFHALGPIY--------YRGSNGALLVYDITDRDSFQKV-KN--WVLELRTMLGNEIELLIVGNKID  129 (218)
T ss_pred             eeeeeeeeccchHhhhccCceE--------EeCCCceEEEEeccchHHHHHH-HH--HHHHHHHHhCCeeEEEEecCccc
Confidence            4678899999964432221111        1346788999998754332210 00  011222222  346788889999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +-.+..+  ...+..+.-+..  .             ...+.+||++..|++++-..+
T Consensus       130 LEeeR~V--t~qeAe~YAesv--G-------------A~y~eTSAk~N~Gi~elFe~L  170 (218)
T KOG0088|consen  130 LEEERQV--TRQEAEAYAESV--G-------------ALYMETSAKDNVGISELFESL  170 (218)
T ss_pred             HHHhhhh--hHHHHHHHHHhh--c-------------hhheecccccccCHHHHHHHH
Confidence            8654321  122222222211  1             345678999999988776555

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.38  E-value=0.00015  Score=61.93  Aligned_cols=43  Identities=19%  Similarity=0.347  Sum_probs=34.0

Q ss_pred             EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|++++.+....+     -+++|+|+.|||||||++.|..
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   48 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT   48 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            367788888877666654433     3589999999999999999985

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=97.38  E-value=0.00016  Score=64.61  Aligned_cols=46  Identities=24%  Similarity=0.341  Sum_probs=38.0

Q ss_pred             ceEEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..+.+.++++.|+ .+..+.....-     ++++.|+.|||||||++.|+..
T Consensus         3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl   54 (293)
T COG1131           3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL   54 (293)
T ss_pred             ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            3577899999999 57787765332     7999999999999999999863

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.38  E-value=0.00022  Score=62.81  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=37.4

Q ss_pred             CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +-++++++++++|+++..+....+-     +++|+|++|||||||++.|..
T Consensus         9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   59 (265)
T PRK10575          9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR   59 (265)
T ss_pred             CceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            3468999999999876666654433     689999999999999999985

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.38  E-value=0.0002  Score=61.73  Aligned_cols=43  Identities=33%  Similarity=0.488  Sum_probs=34.3

Q ss_pred             EEEccccccccCc----ccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~----~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|+++    +.+....+-     +++|+|+.|||||||++.|..
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING   53 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            6788999988765    555543332     699999999999999999985

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.36  E-value=0.00026  Score=60.38  Aligned_cols=46  Identities=30%  Similarity=0.413  Sum_probs=40.5

Q ss_pred             CceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736            9 PLAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++++++++++++..+.+-..     -+.+|+|++|+|||||++.++.
T Consensus         6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~G   56 (263)
T COG1127           6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG   56 (263)
T ss_pred             cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhc
Confidence            568999999999999999986543     3689999999999999999985

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.00021  Score=62.63  Aligned_cols=44  Identities=25%  Similarity=0.417  Sum_probs=36.4

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++|++++|+.++.+....+     -+++|+|++|||||||++.|..
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG   52 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR   52 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            6889999999987666655433     3699999999999999999985

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=97.35  E-value=0.006  Score=53.08  Aligned_cols=36  Identities=25%  Similarity=0.475  Sum_probs=29.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      +.+..+..|+||||+.-.|...  ..|+++.++-.|++
T Consensus         4 i~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~   41 (261)
T TIGR01968         4 IVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIG   41 (261)
T ss_pred             EEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            3455778999999999888663  46899999999985

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.35  E-value=0.00022  Score=62.29  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=36.3

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++++++|+++..+....+-     +++|+|++|||||||++.|..
T Consensus         6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261          6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence            68899999999877666644322     699999999999999999984

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.35  E-value=0.00069  Score=49.10  Aligned_cols=30  Identities=43%  Similarity=0.638  Sum_probs=22.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEE
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAV   63 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vav   63 (293)
                      ++++.|..|+||||+...|...  ..|.++.+
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~   32 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLL   32 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            4678999999999999999864  23445444

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.35  E-value=0.00022  Score=63.16  Aligned_cols=48  Identities=19%  Similarity=0.198  Sum_probs=38.0

Q ss_pred             CCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++-++++.++++.|+++..+....+-     +++|+|+.|||||||++.|..
T Consensus        16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G   68 (274)
T PRK14265         16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR   68 (274)
T ss_pred             CCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            444579999999999876555544333     699999999999999999984

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.35  E-value=0.00017  Score=61.48  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=32.5

Q ss_pred             EEEccccccccC----cccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~----~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|+.    +..+....+-     +++|+|++|||||||++.|..
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~G   52 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG   52 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            357788888865    4455443322     699999999999999999985

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=97.35  E-value=0.00022  Score=64.15  Aligned_cols=45  Identities=20%  Similarity=0.275  Sum_probs=37.6

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|++...+....+-     ++++.|+.|||||||++.|+..
T Consensus         7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl   56 (306)
T PRK13537          7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL   56 (306)
T ss_pred             eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            68999999999877666654333     6999999999999999999864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.34  E-value=0.00022  Score=61.27  Aligned_cols=44  Identities=27%  Similarity=0.453  Sum_probs=37.5

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++++++|+....+.+...-     ++.|+|++|+|||||+|-+..
T Consensus         3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116           3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            57888999999987777766554     499999999999999999985

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.34  E-value=0.00016  Score=62.46  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=34.1

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++|+++..+....+-     +++|+|+.|||||||++.|...
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567888888766666554333     6999999999999999999853

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.34  E-value=0.00019  Score=60.86  Aligned_cols=44  Identities=30%  Similarity=0.460  Sum_probs=33.9

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++|+.++.+.....-     +++|+|++|||||||++.|...
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3577888888776655543322     6899999999999999999853

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=97.34  E-value=0.0016  Score=58.45  Aligned_cols=159  Identities=21%  Similarity=0.219  Sum_probs=84.1

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCc-cccchhh----hhc---CCCCcchhhhhhccCcc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEE-IGVERAM----INE---GEGGALVEEWVELANGC   98 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~-~~~d~~~----~~~---~~~~~~~~~~~~l~~gc   98 (293)
                      ...-|.++++|+..+|||||.+-|++-  .+|.+...+..|+|.. +.+.+.+    +..   ..+|.....-...+-|-
T Consensus       100 ~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~  179 (415)
T KOG2749|consen  100 SSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGL  179 (415)
T ss_pred             hccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecccchhheecccccchhhCcccCCceeeeccC
Confidence            345789999999999999999999873  5688999999988752 1112111    100   00011000000011111


Q ss_pred             eeeccchh--------HHHHHHHHHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH
Q 022736           99 ICCTVKHS--------LVQALEQLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ  168 (293)
Q Consensus        99 icc~~~~~--------l~~~l~~l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~  168 (293)
                      -..+..-+        +.+++..-...  ..+..-+||||.|+.++..+.. +. +  ....++++ ++.|+|.+.....
T Consensus       180 ~sp~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~~egy~~-ll-h--ai~~f~v~-vviVLg~ErLy~~  254 (415)
T KOG2749|consen  180 TSPSTNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIEGEGYAA-LL-H--AIKAFEVD-VVIVLGQERLYSS  254 (415)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHhccCchhcccceEEeccceeccccHHH-HH-H--HHHHcCcc-EEEEeccHHHHHH
Confidence            11111112        22222221110  1134558999999887544432 22 2  23446776 5667777755544


Q ss_pred             HhhhcccCCchHHHHHHhccCEEEEeCCCCCCC
Q 022736          169 IDKYRHLSSYPEAIHQIAFADVVILNKVDLVSP  201 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~  201 (293)
                      +....         .--.+-.++.+-|.+.+-+
T Consensus       255 lkk~~---------~~~~~v~vv~lpKsgGv~~  278 (415)
T KOG2749|consen  255 LKKDL---------PPKKNVRVVKLPKSGGVVA  278 (415)
T ss_pred             HHhhc---------cccccceEEEecCCCCeEe
Confidence            43221         1114457899999987654

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.34  E-value=0.00023  Score=60.95  Aligned_cols=44  Identities=32%  Similarity=0.408  Sum_probs=34.0

Q ss_pred             EEEccccccccCc----ccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~----~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++|+..    +.+.....-     +++|+|+.|||||||++.|...
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6788899888764    445443322     6999999999999999999853

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.33  E-value=0.00024  Score=60.37  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=33.3

Q ss_pred             EEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|+ +...+....+-     +++|+|+.|||||||++.|..
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~G   50 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG   50 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            67889998884 44555543332     699999999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.33  E-value=0.00021  Score=56.37  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +|++.|+||||||||++.|.+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999864

...

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.33  E-value=0.00026  Score=62.40  Aligned_cols=45  Identities=18%  Similarity=0.320  Sum_probs=36.9

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..++++|++++|+.++.+....+-     +++|+|+.|||||||++.|..
T Consensus        19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~G   68 (267)
T PRK14237         19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNR   68 (267)
T ss_pred             eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            368999999999876666654333     599999999999999999985

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.33  E-value=0.00032  Score=61.28  Aligned_cols=44  Identities=16%  Similarity=0.347  Sum_probs=36.3

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++.+++++|+++..+....+-     +++|+|+.|||||||++.|..
T Consensus         7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (254)
T PRK14273          7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNR   55 (254)
T ss_pred             eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            68999999999876665544332     699999999999999999985

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.33  E-value=0.00024  Score=61.50  Aligned_cols=43  Identities=23%  Similarity=0.432  Sum_probs=34.4

Q ss_pred             EEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|+ +++.+....+-     +++|+|+.|||||||++.|..
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   50 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR   50 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            67888888887 55566544333     699999999999999999985

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00021  Score=61.54  Aligned_cols=44  Identities=25%  Similarity=0.464  Sum_probs=36.2

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++|+++.|++.....+...-     +++++|++||||||+++-+-+
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr   49 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR   49 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc
Confidence            36899999999998888876554     488999999999999866543

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00021  Score=64.95  Aligned_cols=46  Identities=28%  Similarity=0.449  Sum_probs=38.5

Q ss_pred             CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +..+++++++++|++...+.+..+-     ++.+.|++||||||+++.|..
T Consensus         3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842           3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3578999999999987777755433     588999999999999999985

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=97.33  E-value=0.00018  Score=65.73  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=38.0

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++.|++++|+....+....+-     +++++|+.|||||||++.|+..
T Consensus        41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl   90 (340)
T PRK13536         41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM   90 (340)
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            69999999999887777654332     6999999999999999999863

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.32  E-value=0.0002  Score=60.66  Aligned_cols=43  Identities=33%  Similarity=0.448  Sum_probs=34.0

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|+.+..+....+-     +++|+|+.|||||||++.|..
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL   48 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3577888888776666544333     699999999999999999995

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.32  E-value=0.00021  Score=61.77  Aligned_cols=44  Identities=27%  Similarity=0.367  Sum_probs=35.0

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++|+++..+....+-     +++|+|+.|||||||++.|...
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864         2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6788899888876666544332     6999999999999999999853

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.32  E-value=0.00086  Score=56.42  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=21.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++|+|++||||||+++.|++.
T Consensus         2 GlilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999875

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.32  E-value=0.00019  Score=61.56  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=33.6

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|++++.+....+-     +++|+|+.|||||||++.|..
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G   48 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR   48 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3577888888776665543332     699999999999999999984

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.32  E-value=0.00025  Score=48.98  Aligned_cols=31  Identities=32%  Similarity=0.514  Sum_probs=23.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEE
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVI   64 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv   64 (293)
                      +++++|.+||||||+.+.|.+...+.++.++
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i   31 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVL   31 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence            4788999999999999999865322444444

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.32  E-value=0.00024  Score=65.23  Aligned_cols=83  Identities=19%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             cccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecC
Q 022736          151 VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC  230 (293)
Q Consensus       151 ~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~  230 (293)
                      ..+|.++.|+++........    +..+.......+.+-+||+||+|+++..      +...+.++.+++..        
T Consensus       111 ANvD~vliV~s~~p~~~~~~----ldr~L~~a~~~~i~piIVLNK~DL~~~~------~~~~~~~~~~~~g~--------  172 (356)
T PRK01889        111 ANVDTVFIVCSLNHDFNLRR----IERYLALAWESGAEPVIVLTKADLCEDA------EEKIAEVEALAPGV--------  172 (356)
T ss_pred             EeCCEEEEEEecCCCCChhH----HHHHHHHHHHcCCCEEEEEEChhcCCCH------HHHHHHHHHhCCCC--------
Confidence            57898999998853222110    0113444455566779999999998642      22234444443332        


Q ss_pred             CCCchhhcccccCCcchhhhhhhhhh
Q 022736          231 QVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       231 ~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                           +++.+|+.++.|++.|..++.
T Consensus       173 -----~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        173 -----PVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             -----cEEEEECCCCccHHHHHHHhh
Confidence                 356677777777777777764

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.32  E-value=0.00024  Score=62.75  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=35.5

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++.+++++|+++..+....+-     +++|+|+.|||||||++.|..
T Consensus         2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (271)
T PRK13638          2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG   49 (271)
T ss_pred             eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            6789999999876666654333     699999999999999999985

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=97.31  E-value=0.00019  Score=64.40  Aligned_cols=46  Identities=28%  Similarity=0.387  Sum_probs=37.4

Q ss_pred             ceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      |.+++.+++++|++...+....+     -+++|+|+.|||||||++.|...
T Consensus         1 ~~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl   51 (301)
T TIGR03522         1 MSIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY   51 (301)
T ss_pred             CEEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999987666665322     26999999999999999999863

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.31  E-value=0.0002  Score=62.66  Aligned_cols=44  Identities=25%  Similarity=0.424  Sum_probs=34.9

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++|+++..+....+-     +++|+|+.|||||||++.|...
T Consensus         2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248          2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6788899888776555544332     6999999999999999999863

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.31  E-value=0.00021  Score=61.52  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=33.8

Q ss_pred             EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|++++.+....+     -+++|+|+.|||||||++.|..
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG   48 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence            357788888877666654332     3699999999999999999985

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.31  E-value=0.00019  Score=61.32  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=32.6

Q ss_pred             EEEccccccccC----cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSN----SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~----~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++|+.    ++.+....+     -+++|+|+.|||||||++.|...
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            357788888876    444444322     26999999999999999999853

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.31  E-value=0.00025  Score=61.76  Aligned_cols=45  Identities=27%  Similarity=0.361  Sum_probs=36.0

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|++++.+....+     -+++|+|+.|||||||++.|...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999887665554332     26999999999999999999853

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.31  E-value=0.00022  Score=59.90  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=27.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d   67 (293)
                      +++|+|++|||||||++.|.+...+.++.++..|
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D   34 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQD   34 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            5889999999999999999875444566676665

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF13479 AAA_24: AAA domain

Probab=97.31  E-value=0.00082  Score=57.23  Aligned_cols=76  Identities=21%  Similarity=0.315  Sum_probs=49.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      -++|.|.+|+|||||+..+      .++.++..|.|. ..+...  .. ..      .+.+       ..-.++.+++..
T Consensus         5 ~~lIyG~~G~GKTt~a~~~------~k~l~id~E~g~-~~~~~~--~~-~~------~i~i-------~s~~~~~~~~~~   61 (213)
T PF13479_consen    5 KILIYGPPGSGKTTLAASL------PKPLFIDTENGS-DSLKFL--DD-GD------VIPI-------TSWEDFLEALDE   61 (213)
T ss_pred             EEEEECCCCCCHHHHHHhC------CCeEEEEeCCCc-cchhhh--cC-CC------eeCc-------CCHHHHHHHHHH
Confidence            4778999999999999988      567888888884 111100  00 00      0111       134467777766


Q ss_pred             HHhhcCCCCEEEEecCCCC
Q 022736          114 LVQRKERLDHILLETTGLA  132 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~  132 (293)
                      +.....+++.|+||+....
T Consensus        62 l~~~~~~y~tiVIDsis~~   80 (213)
T PF13479_consen   62 LEEDEADYDTIVIDSISWL   80 (213)
T ss_pred             HHhccCCCCEEEEECHHHH
Confidence            6555678999999998743

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.31  E-value=0.00022  Score=60.01  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=35.2

Q ss_pred             EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|++++.+....+     .+++|+|+.|||||||++.|..
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G   49 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG   49 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            678899988887666665433     3699999999999999999985

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=97.31  E-value=0.0056  Score=52.79  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=59.2

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccc--hhHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK--HSLVQA  110 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~--~~l~~~  110 (293)
                      .+...--|+||||+.-.|...  ..|++++++..|++..  ... .......    ..  .....|.-....  ..+...
T Consensus         5 ~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s--~~~-w~~~~~~----~~--~~~~~~~~~~~~~~~~l~~~   75 (231)
T PRK13849          5 TFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP--LTR-WKENALR----SN--TWDPACEVYAADELPLLEAA   75 (231)
T ss_pred             EEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC--HHH-HHHhhcc----cc--CCCccceecCCCHHHHHHHH
Confidence            344567799999999888653  5689999999999752  111 1111000    00  001111111110  112222


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL  165 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~  165 (293)
                      +..+.  .+.+|++||||||.....  ..        ......|.||..+.++.+
T Consensus        76 l~~~~--~~~yD~iiID~pp~~~~~--~~--------~al~~aD~vliP~~ps~~  118 (231)
T PRK13849         76 YEDAE--LQGFDYALADTHGGSSEL--NN--------TIIASSNLLLIPTMLTPL  118 (231)
T ss_pred             HHHHh--hCCCCEEEEeCCCCccHH--HH--------HHHHHCCEEEEeccCcHH
Confidence            33221  256999999999965422  11        122456778888877654

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.31  E-value=0.00023  Score=60.08  Aligned_cols=44  Identities=20%  Similarity=0.198  Sum_probs=35.1

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++.+++++|+.++.+....+-     +++|+|+.|||||||++.|...
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538          2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            6788888888776666554333     6999999999999999999853

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.30  E-value=0.00028  Score=61.44  Aligned_cols=44  Identities=25%  Similarity=0.387  Sum_probs=36.3

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++++++|+++..+.....-     +++|+|++|||||||++.|..
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL   51 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48899999999876666654333     589999999999999999985

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.30  E-value=0.00029  Score=60.48  Aligned_cols=44  Identities=20%  Similarity=0.291  Sum_probs=34.5

Q ss_pred             eEEEccccccccCc----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNS----HENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++++++|++.    ..+....+     -+++|+|+.|||||||++.|..
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   58 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG   58 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            47899999998752    24444332     3799999999999999999985

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.30  E-value=0.0003  Score=61.23  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=36.7

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++++++.|+++..+.....-     +++|+|+.|||||||++.|..
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNR   51 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence            67899999999876666654433     699999999999999999984

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.30  E-value=0.00031  Score=67.75  Aligned_cols=54  Identities=22%  Similarity=0.293  Sum_probs=40.1

Q ss_pred             CCCCCCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736            2 EDEEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.+-..+-.+++++++++|+++..+....+-     +++|+|+.|||||||++.|...
T Consensus         2 ~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl   60 (510)
T PRK15439          2 QTSDTTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI   60 (510)
T ss_pred             CCCcCCCCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            33343333368999999999876666544332     5999999999999999999863

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.30  E-value=0.00026  Score=60.25  Aligned_cols=43  Identities=33%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             EEEccccccccCc----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNS----HENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|+..    +.+.....     -+++|+|+.|||||||++.|..
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG   53 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            6788899888765    44554322     2589999999999999999985

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.29  E-value=0.00027  Score=61.70  Aligned_cols=44  Identities=36%  Similarity=0.538  Sum_probs=36.5

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++|++++|++++.+....+-     +++|+|++|||||||++.|..
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   52 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINR   52 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            57899999999876666654433     699999999999999999985

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.29  E-value=0.00019  Score=60.80  Aligned_cols=43  Identities=30%  Similarity=0.480  Sum_probs=32.7

Q ss_pred             EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|++++.+....+     -+++|+|+.|||||||++.|..
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G   48 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG   48 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            356788888876555544322     2689999999999999999995

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.29  E-value=0.00027  Score=60.31  Aligned_cols=43  Identities=26%  Similarity=0.415  Sum_probs=30.7

Q ss_pred             EEEccccccccCc----ccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~----~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++++.|...    +.+.....-     +++|+|++|||||||+|-+-.
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4567777766554    334433222     599999999999999999974

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=97.29  E-value=0.00027  Score=61.60  Aligned_cols=44  Identities=25%  Similarity=0.420  Sum_probs=35.9

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++++++|+++..+....+-     +++|+|+.|||||||++.|..
T Consensus         5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239          5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            57899999999876666544332     699999999999999999974

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.29  E-value=0.00027  Score=62.70  Aligned_cols=46  Identities=20%  Similarity=0.366  Sum_probs=35.3

Q ss_pred             ceEEEccccccccCc-----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFSNS-----HENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~-----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      |.+++++++++|+..     +.+....+     -+++|+|+.|||||||++.|...
T Consensus         1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl   56 (280)
T PRK13649          1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL   56 (280)
T ss_pred             CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            668899999998752     34443322     26899999999999999999853

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=97.29  E-value=0.00033  Score=61.22  Aligned_cols=45  Identities=22%  Similarity=0.248  Sum_probs=35.7

Q ss_pred             CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      |..+++++++++| ..+.+.....-     +++|+|++|||||||++.|..
T Consensus         2 ~~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   51 (254)
T PRK10418          2 PQQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG   51 (254)
T ss_pred             CcEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4578999999988 44555544332     699999999999999999985

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.29  E-value=0.00025  Score=61.69  Aligned_cols=44  Identities=23%  Similarity=0.367  Sum_probs=35.0

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++|+....+....+-     +++|+|++|||||||++.|...
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (247)
T TIGR00972         2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM   50 (247)
T ss_pred             EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            6788999888776656554333     6999999999999999999853

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.28  E-value=0.00025  Score=47.71  Aligned_cols=21  Identities=57%  Similarity=0.707  Sum_probs=19.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll   53 (293)
                      ++++|+|+.||||||++.++.
T Consensus        24 ~~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999986

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.28  E-value=0.00027  Score=60.93  Aligned_cols=44  Identities=25%  Similarity=0.391  Sum_probs=33.8

Q ss_pred             eEEEccccccccCc----ccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++++++|+..    +.+....+-     +++|+|+.|||||||++.|..
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   57 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG   57 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            38899999988642    344433222     689999999999999999985

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.28  E-value=0.00021  Score=61.92  Aligned_cols=43  Identities=26%  Similarity=0.347  Sum_probs=33.6

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|++++.+.....-     +++|+|+.|||||||++.|..
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG   48 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3577888888766655543322     699999999999999999985

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
1nij_A	318	Yjia Protein Length = 318		2e-22
4ixn_A	318	Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Tr		2e-20

>pdb|1NIJ|A Chain A, Yjia Protein Length = 318

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 32/240 (13%)
Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           + VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+  +I     G    + 
Sbjct: 4   IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLI-----GDRATQI 57
Query: 92  VELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQL 147
             L NGCICC+  + L  AL  L+   ++     D +++E TG+A+P P+    +  + L
Sbjct: 58  KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 117
Query: 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDS 207
                LD +I +VDA +   Q++++    S      Q+ +AD ++L K D+     +G++
Sbjct: 118 CQRYLLDGVIALVDAVHADEQMNQFTIAQS------QVGYADRILLTKTDV-----AGEA 166
Query: 208 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 267
            ++L + +  IN+ A V       +DL  + N   +          +LEE+   +    H
Sbjct: 167 -EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGF----------MLEENVVSTKPRFH 215

>pdb|4IXN|A Chain A, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple Mutant Yjia Gtpase Length = 318

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 124/240 (51%), Gaps = 32/240 (13%)
Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           + VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+  +I     G    + 
Sbjct: 4   IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIANEFG-EVSVDDQLI-----GDRATQI 57
Query: 92  VELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQL 147
             L NGCI  +  + L  AL  L+   ++     D +++E TG+A+P P+    +  + L
Sbjct: 58  KTLTNGCIAASRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 117
Query: 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDS 207
                LD +I +VDA +   Q++++    S      Q+ +AD ++L K D+     +G++
Sbjct: 118 CQRYLLDGVIALVDAVHADEQMNQFTIAQS------QVGYADRILLTKTDV-----AGEA 166
Query: 208 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 267
            ++L + +  IN+ A V       +DL  + N   +          +LEE+   +    H
Sbjct: 167 -EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGF----------MLEENVVSTKPRFH 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	1e-94
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	1e-07

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Length = 318

 Score =  281 bits (721), Expect = 1e-94
 Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 27/258 (10%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE 93
           VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFGE + V+  +I +        +   
Sbjct: 6   VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKT 59

Query: 94  LANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQLES 149
           L NGCICC+  + L  AL  L+   ++     D +++E TG+A+P P+    +  + L  
Sbjct: 60  LTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQ 119

Query: 150 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLD 209
              LD +I +VDA +          ++ +  A  Q+ +AD ++L K D+          +
Sbjct: 120 RYLLDGVIALVDAVHAD------EQMNQFTIAQSQVGYADRILLTKTDVAGE------AE 167

Query: 210 ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDN 269
           +L + +  IN+ A V       +DL  + N   +        E ++             N
Sbjct: 168 KLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLE-----ENVVSTKPRFHFIADKQN 222

Query: 270 NVRTLSICEPLAVNLDKV 287
           ++ ++ +     V++ +V
Sbjct: 223 DISSIVVELDYPVDISEV 240

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 47/328 (14%), Positives = 97/328 (29%), Gaps = 94/328 (28%)

Query: 3   DEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIA 62
           D +      V   +   +   +      +  V +I G LG+GK+ +            + 
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVA-----------LD 169

Query: 63  VILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR----- 117
           V L+       V+  M    +       W+ L N    C    ++++ L++L+ +     
Sbjct: 170 VCLSY-----KVQCKM----DFKIF---WLNLKN----CNSPETVLEMLQKLLYQIDPNW 213

Query: 118 KERLDHI----------------LLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVD 161
             R DH                 LL++    N      +L L +     V+        +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLLVLLN-----VQNAKAWNAFN 263

Query: 162 --AKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERS--------GDSLDEL 211
              K LL    K        + +       + + +    ++P+               +L
Sbjct: 264 LSCKILLTTRFK-----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 212 EKEIHEINSLAH-----VIRSVRCQVDLSEVLNCRAYDAT---HVTRLEGLLEEHQYKSS 263
            +E+   N          IR      D  + +NC          +  LE       +   
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR- 377

Query: 264 QNLHDNNVRTLSICEPLAVNLDKVILQI 291
                     LS+  P + ++  ++L +
Sbjct: 378 ----------LSVF-PPSAHIPTILLSL 394

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 15/197 (7%)

Query: 22  SNSHENDDVSVGVTVITGFLGAGKSTLVNYILN-GKHGKRIAVILNEFGEEIGVERAMIN 80
           S+ H +  ++  + V  G  G+GK+TL        +   ++A +  + G +       I+
Sbjct: 4   SHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSID 63

Query: 81  EGEGGAL---VEEWVELANGCICCT--VKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
             E   +   + E        +     +     + L ++++ ++  D++L++T G     
Sbjct: 64  VREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF 123

Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVI 192
                     +L   +    ++ + D            +      A+    ++    +  
Sbjct: 124 LFHEFGV---RLMENLPYPLVVYISDP---EILKKPNDYCFVRFFALLIDLRLGATTIPA 177

Query: 193 LNKVDLVSPERSGDSLD 209
           LNKVDL+S E       
Sbjct: 178 LNKVDLLSEEEKERHRK 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	100.0
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.79
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.79
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.76
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.76
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.75
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.75
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.74
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.73
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.72
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.71
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.71
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.68
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.68
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.66
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.63
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.62
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.62
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.61
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.61
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.59
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.57
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.56
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.56
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.55
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.55
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.55
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.54
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.53
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.53
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.53
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.52
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.51
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.51
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.51
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.51
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.51
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.5
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.5
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.5
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.5
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.5
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.5
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.49
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.49
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.49
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.49
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.49
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.49
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.49
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.49
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.49
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.49
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.48
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.48
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.48
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.48
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.48
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.48
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.48
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.48
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.48
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.47
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.47
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.47
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.47
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.47
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.47
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.47
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.47
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.47
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.47
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.47
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.46
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.46
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.46
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.46
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.46
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.46
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.46
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.45
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.45
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.45
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.45
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.45
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.45
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.45
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.45
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.45
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.45
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.45
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.45
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.45
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.44
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.44
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.44
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.44
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.43
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.43
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.43
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.43
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.43
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.42
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.42
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.41
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.41
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.41
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.41
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.41
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.41
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.41
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.41
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.41
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.4
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.4
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.4
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.4
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.4
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.39
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.39
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.39
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.39
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.39
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.39
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.39
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.39
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.38
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.38
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.37
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.37
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.36
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.36
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.35
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.35
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.35
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.34
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.34
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.33
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.33
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.33
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.32
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.32
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.31
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.3
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.3
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.3
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.3
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.3
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.3
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.96
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.3
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.29
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.29
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.28
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.28
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.28
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.27
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.27
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.27
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.26
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.26
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.25
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.25
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.25
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.24
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.24
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.24
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.23
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.22
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.21
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.21
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.21
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.19
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.18
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.18
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.18
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.17
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.17
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.16
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.16
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.14
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.12
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.12
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.12
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.08
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.07
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.06
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.03
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.03
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.02
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	99.0
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.98
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.97
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.96
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.96
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.94
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.93
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.93
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.9
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.83
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.74
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.72
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.71
2xxa_A	433	Signal recognition particle protein; protein trans	98.69
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.68
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.68
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.67
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.67
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.61
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.61
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	98.58
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.58
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.54
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.51
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.49
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.48
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.46
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.41
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.39
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.33
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.28
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.22
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.21
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.2
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	98.18
3cwq_A	209	Para family chromosome partitioning protein; alpha	98.17
3end_A	307	Light-independent protochlorophyllide reductase ir	98.14
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	98.07
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.05
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.97
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	97.94
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	97.94
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.91
2og2_A	359	Putative signal recognition particle receptor; nuc	97.87
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	97.85
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.84
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	97.83
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	97.79
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	97.77
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	97.76
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	97.75
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.65
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	97.64
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	97.61
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.61
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.6
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	97.55
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.55
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	97.53
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.53
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.53
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.52
1g6h_A	257	High-affinity branched-chain amino acid transport	97.51
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.48
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.47
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.47
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.47
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.47
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	97.47
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.46
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.46
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.45
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.42
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.4
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.39
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.38
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.37
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.35
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	97.35
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.34
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.33
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	97.32
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.3
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.29
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	97.27
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.27
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.21
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.2
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.18
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.16
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.15
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.14
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.14
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.13
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.1
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.09
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.05
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.03
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.03
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.01
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.01
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.01
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.0
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.98
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.97
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.97
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.96
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.96
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.96
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.95
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.94
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.93
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.93
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	96.93
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.9
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.88
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.88
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.88
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.87
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.86
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.84
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.83
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.83
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.82
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.82
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.81
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.8
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.79
4ehx_A	315	Tetraacyldisaccharide 4'-kinase; membrane protein,	96.77
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.77
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	96.77
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.77
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.74
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.74
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.72
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.72
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.71
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.71
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.7
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.7
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.7
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.7
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.69
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.69
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.68
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.68
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.68
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.68
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.66
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.65
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.65
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.64
1via_A	175	Shikimate kinase; structural genomics, transferase	96.63
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.63
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.62
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.62
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.62
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.62
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.62
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.6
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.59
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.59
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.58
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.57
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.57
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.55
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.54
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.54
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.53
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.53
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.53
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.52
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.51
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.5
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.48
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.47
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.46
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.45
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.45
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.43
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.43
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	96.43
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.42
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.42
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.41
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.4
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.4
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.4
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.4
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.38
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.38
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.37
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.36
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.34
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.34
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.33
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.33
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.32
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.32
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.31
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.3
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.29
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.29
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.29
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.29
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.28
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.28
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.28
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.24
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.24
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.24
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	96.23
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.23
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.21
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.21
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.2
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.2
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.2
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.19
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.18
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.18
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.17
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.17
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.16
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.15
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.15
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.14
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.14
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.12
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	96.1
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.09
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.09
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	96.08
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.07
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	96.06
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.06
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.05
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.05
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.04
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.0
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.0
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.99
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.99
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.99
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.97
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.97
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.97
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.95
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.94
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.94
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.92
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.9
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.89
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.87
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.87
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.87
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.87
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	95.87
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.85
3fwy_A	314	Light-independent protochlorophyllide reductase I	95.83
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.82
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.82
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.82
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.8
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.78
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.75
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.75
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.74
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.72
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.66
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	95.65
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.64
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.63
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.63
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.6
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.59
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	95.58
3bos_A	242	Putative DNA replication factor; P-loop containing	95.58
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.56
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.53
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.51
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.51
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.51
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.49
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.47
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.47
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.43
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.39
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.39
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.38
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.37
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.36
3io5_A	333	Recombination and repair protein; storage dimer, i	95.35
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.3
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.3
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.29
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.29
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.26
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.25
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.25
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.24
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.21
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.19
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.13
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.12
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.1
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.1

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=100.00  E-value=4.6e-32  Score=243.65  Aligned_cols=240  Identities=30%  Similarity=0.517  Sum_probs=187.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .++|+++|+|++|||||||+|.|+....+.++||+.|++|+ +.+|...+....     ..+++++|||+||+.+.++..
T Consensus         2 ~~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~-i~idg~~l~~~~-----~~~~el~~gCicc~~~~~~~~   75 (318)
T 1nij_A            2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELED   75 (318)
T ss_dssp             CCEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS-CCEEEEEECTTS-----CEEEEETTSCEEECTTSCHHH
T ss_pred             CcccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcc-cCccHHHHhCCC-----CCEEEECCCceEEcccHHHHH
Confidence            57999999999999999999999987778999999999998 899887765421     357889999999999999999


Q ss_pred             HHHHHH--hhcC--CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          110 ALEQLV--QRKE--RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       110 ~l~~l~--~~~~--~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                      .+..++  ....  .++++++|+.|+++|.++...++..........++.++.++|+..+......      .....+|+
T Consensus        76 ~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~------ls~g~~Q~  149 (318)
T 1nij_A           76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQV  149 (318)
T ss_dssp             HHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHH------CHHHHHHH
T ss_pred             HHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhh------chHHHHHH
Confidence            988885  2223  3599999999999998876655333334455678889999999887766542      34566899


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCC
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQN  265 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~  265 (293)
                      ..++++++||.|++++.      .++.+.++.+||.+.++...++..+...++.+..++......     .......+++
T Consensus       150 ~~ad~ill~k~dl~de~------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~  218 (318)
T 1nij_A          150 GYADRILLTKTDVAGEA------EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVV-----STKPRFHFIA  218 (318)
T ss_dssp             HTCSEEEEECTTTCSCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTSCCSCCC-----SSCCCSCSTG
T ss_pred             HhCCEEEEECcccCCHH------HHHHHHHHHhCCCCeEEEecccCCCHHHHhCCCCCChhhhhc-----ccCccccccc
Confidence            99999999999999542      688888999999999999999888888888766544322110     0000111233


Q ss_pred             CCCCCEEEEEEecCCCCCHHHHHHhhh
Q 022736          266 LHDNNVRTLSICEPLAVNLDKVILQIA  292 (293)
Q Consensus       266 ~~~~~~~~~~~~~~~p~~~~~~~~~l~  292 (293)
                      .|++++++++++.++|+++++|.+||+
T Consensus       219 ~~~~~v~s~~~~~~~~~~~~~l~~~l~  245 (318)
T 1nij_A          219 DKQNDISSIVVELDYPVDISEVSRVME  245 (318)
T ss_dssp             GGGCSEEEEEEEESSCBCHHHHHHHHH
T ss_pred             CCCCCeEEEEEEeCCCCCHHHHHHHHH
Confidence            456789999999999999999999985

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.79  E-value=1.6e-19  Score=152.90  Aligned_cols=182  Identities=16%  Similarity=0.240  Sum_probs=125.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .++++++++|++|||||||+++|+.. ....+++++.++++.  ..|...+...  +   ...+.+..||+||.....+.
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~  100 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KADYERVRRF--G---IKAEAISTGKECHLDAHMIY  100 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHHHHHHHTT--T---CEEEECCCTTCSSCCHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chhHHHHHhC--C---CcEEEecCCceeecccHHHH
Confidence            46899999999999999999999975 333689999999985  3454444321  1   12456788999876554444


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCC-CCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          109 QALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~-~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                      +.+.    ...++++++|||+|. ..|..+            ....+.+++|+|+..+.....         ....+...
T Consensus       101 ~~~~----~~~~~d~iiidt~G~~~~~~~~------------~~~~~~~i~vvd~~~~~~~~~---------~~~~~~~~  155 (221)
T 2wsm_A          101 HRLK----KFSDCDLLLIENVGNLICPVDF------------DLGENYRVVMVSVTEGDDVVE---------KHPEIFRV  155 (221)
T ss_dssp             TTGG----GGTTCSEEEEEEEEBSSGGGGC------------CCSCSEEEEEEEGGGCTTHHH---------HCHHHHHT
T ss_pred             HHHH----hcCCCCEEEEeCCCCCCCCchh------------ccccCcEEEEEeCCCcchhhh---------hhhhhhhc
Confidence            4333    245789999999995 323210            012356899999976532211         11234578


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |.++|+||+|+.+..+  ....++.+.++.+++.+             .++.+|+++|+|++++.+++.+.
T Consensus       156 ~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~-------------~i~~~Sa~~g~gi~~l~~~l~~~  211 (221)
T 2wsm_A          156 ADLIVINKVALAEAVG--ADVEKMKADAKLINPRA-------------KIIEMDLKTGKGFEEWIDFLRGI  211 (221)
T ss_dssp             CSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTS-------------EEEECBTTTTBTHHHHHHHHHHH
T ss_pred             CCEEEEecccCCcchh--hHHHHHHHHHHHhCCCC-------------eEEEeecCCCCCHHHHHHHHHHH
Confidence            9999999999875311  13577777787776543             45789999999999999998754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.79  E-value=3.4e-19  Score=161.66  Aligned_cols=198  Identities=15%  Similarity=0.103  Sum_probs=106.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCC----CCc-chhhhhhccCcceeec
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE----GGA-LVEEWVELANGCICCT  102 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~----~~~-~~~~~~~l~~gcicc~  102 (293)
                      ...++++|+|++|||||||+|+|+..  ..+.+++|+..|+++ ...++.++.+..    .+. ...-+...+.+|.||.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~-~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg  150 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS-CTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGG  150 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------CCSTTCTTEEEECC--------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC-CCcCcchhchHHHHHHhcCCCCEEEEecCCcccccc
Confidence            34899999999999999999999864  346899999999986 444443333210    000 0001223467888875


Q ss_pred             cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736          103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI  182 (293)
Q Consensus       103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~  182 (293)
                      ...+..+.+..+-  ..+++++|+||+|+..+....           ...+|.+++|+|+........       ...  
T Consensus       151 ~tr~~~~~~~~~~--~~~~~~iliDT~Gi~~~~~~l-----------~~~~d~vl~V~d~~~~~~~~~-------i~~--  208 (349)
T 2www_A          151 VTRTTNEAILLCE--GAGYDIILIETVGVGQSEFAV-----------ADMVDMFVLLLPPAGGDELQG-------IKR--  208 (349)
T ss_dssp             -CTTHHHHHHHHH--HTTCSEEEEECCCC--CHHHH-----------HTTCSEEEEEECCC-------------------
T ss_pred             chHHHHHHHHhhc--cCCCCEEEEECCCcchhhhhH-----------HhhCCEEEEEEcCCcchhHHH-------hHH--
Confidence            5455555554322  367899999999987553111           136788999999975421100       000  


Q ss_pred             HHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       183 ~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ..++.++++|+||+|+.+..........+...++.++|.+..        ...+++.+|+++|+|+++|.+++.+.
T Consensus       209 ~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~--------~~~~vi~iSA~~g~Gi~~L~~~I~~~  276 (349)
T 2www_A          209 GIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQV--------WKPKVIRISARSGEGISEMWDKMKDF  276 (349)
T ss_dssp             --CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-------------CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccC--------CCceEEEEecCCCCCHHHHHHHHHHH
Confidence            123568999999999975321001123333344433442211        01356789999999999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.76  E-value=7.4e-19  Score=159.87  Aligned_cols=195  Identities=20%  Similarity=0.181  Sum_probs=121.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhc--------CCCCcchhhhhhccCcce
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE--------GEGGALVEEWVELANGCI   99 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~--------~~~~~~~~~~~~l~~gci   99 (293)
                      .+.++|+|+|++|+|||||+++|...  ..|++++++..|++.+ ......+.+        ...+   ..+...+.+|.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~-~~~g~~l~d~~~~~~~~~~~~---~~i~~~~~~~~  152 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST-RTGGSILGDKTRMARLAVHPN---AYIRPSPTSGT  152 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------CHHHHTCTT---EEEECCC--CC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC-cccchhccchhhHHhhccCCC---eeEEECCCCcc
Confidence            46789999999999999999999864  5689999999999862 222211111        0011   12345677888


Q ss_pred             eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736          100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP  179 (293)
Q Consensus       100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~  179 (293)
                      ||.......+.+. .+. ..+++++||||||+.......           ...+|.+++|+|+.......    .   +.
T Consensus       153 ~~~~~~~t~d~i~-~~~-~~~~~~iiiDTpGi~~~~~~~-----------~~~aD~vl~V~d~~~~~~~~----~---l~  212 (355)
T 3p32_A          153 LGGVTRATRETVV-LLE-AAGFDVILIETVGVGQSEVAV-----------ANMVDTFVLLTLARTGDQLQ----G---IK  212 (355)
T ss_dssp             HHHHHHHHHHHHH-HHH-HTTCCEEEEEECSCSSHHHHH-----------HTTCSEEEEEEESSTTCTTT----T---CC
T ss_pred             ccchhHHHHHHHH-HHh-hCCCCEEEEeCCCCCcHHHHH-----------HHhCCEEEEEECCCCCccHH----H---HH
Confidence            8877766666663 222 367999999999987643221           15678999999986532210    0   11


Q ss_pred             HHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       180 ~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                        ....+.|+++|+||+|+.+.........++.+.++..+|...      +  -..+++.+||++|+|++++.+++.+.
T Consensus       213 --~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~------~--~~~~vi~iSA~~g~Gi~~L~~~i~~~  281 (355)
T 3p32_A          213 --KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREA------L--WRPPVLTMSAVEGRGLAELWDTVERH  281 (355)
T ss_dssp             --TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCC------S--CCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred             --HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhcccccc------C--CCCceEEEEcCCCCCHHHHHHHHHHH
Confidence              112356999999999997543211223344455554543210      0  01357899999999999999888654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.76  E-value=1.2e-18  Score=154.88  Aligned_cols=164  Identities=23%  Similarity=0.251  Sum_probs=109.2

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+.+.++|+|.+|+|||||+|+|+    +.++++++..++++.    ..+..         .                  
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~----g~~~~ivs~~~~tTr----~~i~~---------i------------------   49 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLL----GVKVAPISPRPQTTR----KRLRG---------I------------------   49 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCC----SCEEE---------E------------------
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHh----CCceeeecCCCCcee----EEEEE---------E------------------
Confidence            567889999999999999999999    666666666666522    11110         0                  


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hc
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AF  187 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~  187 (293)
                            ....+.+++|+||||+.++.......+..........+|++++|+|+++.....+..     +...+.+.  ..
T Consensus        50 ------~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~-----i~~~l~~~~~~~  118 (301)
T 1wf3_A           50 ------LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDEL-----VARALKPLVGKV  118 (301)
T ss_dssp             ------EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHH-----HHHHHGGGTTTS
T ss_pred             ------EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHH-----HHHHHHhhcCCC
Confidence                  002345789999999988755444333333344556799999999997643322211     12233333  56


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |.++|+||+|+.+..    .  .+...++.+.             ++..++++||++|.|++++.+++.+.
T Consensus       119 p~ilV~NK~Dl~~~~----~--~~~~~~~~~~-------------~~~~~~~iSA~~g~gv~~l~~~l~~~  170 (301)
T 1wf3_A          119 PILLVGNKLDAAKYP----E--EAMKAYHELL-------------PEAEPRMLSALDERQVAELKADLLAL  170 (301)
T ss_dssp             CEEEEEECGGGCSSH----H--HHHHHHHHTS-------------TTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CEEEEEECcccCCch----H--HHHHHHHHhc-------------CcCcEEEEeCCCCCCHHHHHHHHHHh
Confidence            889999999998643    1  1344444431             23457899999999999999988653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.75  E-value=2.6e-18  Score=153.37  Aligned_cols=169  Identities=24%  Similarity=0.325  Sum_probs=110.5

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..+.+.|+++|.+|||||||+|+|+    +.++++++..++++...-.....                            
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~----g~~~~i~s~~~~tT~~~~~~~~~----------------------------   54 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLL----GTKVSIISPKAGTTRMRVLGVKN----------------------------   54 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEEEEEE----------------------------
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHh----CCCccccCCCCCceeeEEEEEEe----------------------------
Confidence            4467899999999999999999999    77777777777763211110000                            


Q ss_pred             HHHHHHHhhcC-CCCEEEEecCCCCCcH--HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          109 QALEQLVQRKE-RLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       109 ~~l~~l~~~~~-~~d~iiidt~G~~~~~--~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                               .. +.+++|+||||+.++.  ......+..........+|++++|+|+.......+..    .+...+.+.
T Consensus        55 ---------~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~----~~~~~l~~~  121 (308)
T 3iev_A           55 ---------IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEE----IYQNFIKPL  121 (308)
T ss_dssp             ---------ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHH----HHHHHTGGG
T ss_pred             ---------cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHH----HHHHHHHhc
Confidence                     12 5678999999998765  2222222223334446789999999998643322211    012333444


Q ss_pred             hccCEEEEeCCCCC-CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          186 AFADVVILNKVDLV-SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       186 ~~a~iivlNK~D~~-~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ..|.++|+||+|+. +..    ........+.....            .+..++++||++|.|++++.+++.+.
T Consensus       122 ~~pvilV~NK~Dl~~~~~----~~~~~~~~l~~~~~------------~~~~i~~vSA~~g~gv~~L~~~l~~~  179 (308)
T 3iev_A          122 NKPVIVVINKIDKIGPAK----NVLPLIDEIHKKHP------------ELTEIVPISALKGANLDELVKTILKY  179 (308)
T ss_dssp             CCCEEEEEECGGGSSSGG----GGHHHHHHHHHHCT------------TCCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCEEEEEECccCCCCHH----HHHHHHHHHHHhcc------------CCCeEEEEeCCCCCCHHHHHHHHHHh
Confidence            67899999999998 433    23444444444331            12467899999999999999888654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.75  E-value=9.5e-18  Score=151.74  Aligned_cols=198  Identities=17%  Similarity=0.150  Sum_probs=116.9

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchh
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      ..+.++++++|++|+|||||+|.|+..  ..+.+++++..|+++ ...+..++.+.   ...+.....+++|+||.....
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~-~~~~~~il~d~---~~~~~~~~~~~~~i~~~~~~~  128 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS-PVTGGSILGDK---TRMNDLARAEAAFIRPVPSSG  128 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-------------------CTTTTCTTEEEEEECC--
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc-CCCCcceeccc---chHHhhccCCCceeecCcccc
Confidence            356789999999999999999999763  347899999999986 33333333221   111223344789999864322


Q ss_pred             -----HHHHHHHHHh-hcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736          107 -----LVQALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE  180 (293)
Q Consensus       107 -----l~~~l~~l~~-~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~  180 (293)
                           ....+..+.. ...+++++||||||+.++....           ...+|.+++|+|+..... .   ..   ...
T Consensus       129 ~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~-----------~~~aD~vl~Vvd~~~~~~-~---~~---l~~  190 (341)
T 2p67_A          129 HLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEV-----------ARMVDCFISLQIAGGGDD-L---QG---IKK  190 (341)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH-----------HTTCSEEEEEECC----------CC---CCH
T ss_pred             ccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHHH-----------HHhCCEEEEEEeCCccHH-H---HH---HHH
Confidence                 1222222221 1467899999999988754321           156889999999975422 1   11   111


Q ss_pred             HHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       181 ~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                        .+...+.++|+||+|+.+..........++..++.+++...      .  -...++++||++|+|++++.+++.+.
T Consensus       191 --~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~------~--~~~~vi~iSA~~g~gi~~L~~~l~~~  258 (341)
T 2p67_A          191 --GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYD------E--WQPRVLTCSALEKRGIDEIWHAIIDF  258 (341)
T ss_dssp             --HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBT------T--BCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             --hhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhcccccc------C--CCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence              23467899999999997642110111234444433343110      0  01357899999999999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.74  E-value=2.1e-18  Score=145.86  Aligned_cols=187  Identities=19%  Similarity=0.167  Sum_probs=109.6

Q ss_pred             cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce
Q 022736           20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI   99 (293)
Q Consensus        20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci   99 (293)
                      +..........+.+.|+|+|.+|+|||||+|+|+...   +++.+...+|.+.......+.                   
T Consensus        17 ~~~~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~---~~~~~~~~~~~t~~~~~~~~~-------------------   74 (223)
T 4dhe_A           17 TVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQK---RLAFASKTPGRTQHINYFSVG-------------------   74 (223)
T ss_dssp             EECSGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCS---SSSCTTCCCCSCCCEEEEEES-------------------
T ss_pred             cccchhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---cceeecCCCCcccceEEEEec-------------------
Confidence            4444445555667889999999999999999999531   123333344431111100000                   


Q ss_pred             eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCc------HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhc
Q 022736          100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYR  173 (293)
Q Consensus       100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~------~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~  173 (293)
                                       ...+..+.|+||||+.++      ......+ ...++.....+|.+++|+|+.......... 
T Consensus        75 -----------------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-  135 (223)
T 4dhe_A           75 -----------------PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL-LSSYLQTRPQLCGMILMMDARRPLTELDRR-  135 (223)
T ss_dssp             -----------------CTTSCSEEEEECCCCCSSCCCSTHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-
T ss_pred             -----------------CCCCCcEEEEcCCCCCcccCChhhHHHHHHH-HHHHHhcCcCcCEEEEEEeCCCCCCHHHHH-
Confidence                             023467899999997664      1222111 123344445578899999997643322211 


Q ss_pred             ccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736          174 HLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG  253 (293)
Q Consensus       174 ~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~  253 (293)
                          +...+.+...+.++|+||+|+.+..+.......+.+.+....+.        +......++.+||++|+|++++.+
T Consensus       136 ----~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~SA~~g~gv~~l~~  203 (223)
T 4dhe_A          136 ----MIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA--------GYAGKLTVQLFSALKRTGLDDAHA  203 (223)
T ss_dssp             ----HHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH--------TCCSCEEEEEEBTTTTBSHHHHHH
T ss_pred             ----HHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc--------ccCCCCeEEEeecCCCcCHHHHHH
Confidence                23344445678999999999987543212233444444443100        000124578899999999999999


Q ss_pred             hhhhhc
Q 022736          254 LLEEHQ  259 (293)
Q Consensus       254 ~l~~~~  259 (293)
                      ++.+..
T Consensus       204 ~l~~~~  209 (223)
T 4dhe_A          204 LIESWL  209 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            987643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.73  E-value=6.8e-18  Score=139.21  Aligned_cols=176  Identities=16%  Similarity=0.169  Sum_probs=105.0

Q ss_pred             ccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcc
Q 022736           19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC   98 (293)
Q Consensus        19 ~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gc   98 (293)
                      .+............+-++++|.+|+|||||+|+|+..    +.......+|.+....    ..                 
T Consensus        10 ~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~t~~~~----~~-----------------   64 (195)
T 3pqc_A           10 KVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR----KIAFVSKTPGKTRSIN----FY-----------------   64 (195)
T ss_dssp             EEECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS----CCSCCCSSCCCCCCEE----EE-----------------
T ss_pred             HHhcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcC----ccccccCCCCCccCeE----EE-----------------
Confidence            3444444555566778999999999999999999943    3222233333211100    00                 


Q ss_pred             eeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCc------HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhh
Q 022736           99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY  172 (293)
Q Consensus        99 icc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~------~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~  172 (293)
                                         ..+.++.++||||+...      ......+ ...++.....++.+++|+|+..........
T Consensus        65 -------------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~  124 (195)
T 3pqc_A           65 -------------------LVNSKYYFVDLPGYGYAKVSKKERMLWKRL-VEDYFKNRWSLQMVFLLVDGRIPPQDSDLM  124 (195)
T ss_dssp             -------------------EETTTEEEEECCCBSSSCCCHHHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH
T ss_pred             -------------------EECCcEEEEECCCCccccCChhhHHHHHHH-HHHHHhcCcCceEEEEEecCCCCCCHHHHH
Confidence                               12345889999996432      1111111 123344445678999999987543222111


Q ss_pred             cccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736          173 RHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE  252 (293)
Q Consensus       173 ~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~  252 (293)
                           ...++.....+.++|+||+|+.+..++    ....+.++.....          .....++.+||++|+|++++.
T Consensus       125 -----~~~~~~~~~~p~i~v~nK~Dl~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~  185 (195)
T 3pqc_A          125 -----MVEWMKSLNIPFTIVLTKMDKVKMSER----AKKLEEHRKVFSK----------YGEYTIIPTSSVTGEGISELL  185 (195)
T ss_dssp             -----HHHHHHHTTCCEEEEEECGGGSCGGGH----HHHHHHHHHHHHS----------SCCSCEEECCTTTCTTHHHHH
T ss_pred             -----HHHHHHHcCCCEEEEEEChhcCChHHH----HHHHHHHHHHHhh----------cCCCceEEEecCCCCCHHHHH
Confidence                 233455557899999999999876532    3333333332211          011357889999999999999


Q ss_pred             hhhhhh
Q 022736          253 GLLEEH  258 (293)
Q Consensus       253 ~~l~~~  258 (293)
                      +++.+.
T Consensus       186 ~~l~~~  191 (195)
T 3pqc_A          186 DLISTL  191 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.72  E-value=2.6e-17  Score=142.88  Aligned_cols=219  Identities=20%  Similarity=0.134  Sum_probs=118.4

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhh---hccCcceeecc-
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWV---ELANGCICCTV-  103 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~---~l~~gcicc~~-  103 (293)
                      ..+.++++++|++|+||||+++.|... ..|++++++..|++. ...+...-.+..+....++.+   ...+||+||+. 
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGV-KELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYD   89 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSC-SCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccCCCCCCChhhcccHHHHhhccCCCCCcEEecHH
Confidence            457899999999999999999999752 268899999999985 221100000000000111111   23577877752 


Q ss_pred             -----chhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCc
Q 022736          104 -----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY  178 (293)
Q Consensus       104 -----~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~  178 (293)
                           ...+...+..+-   .+++++||||||..++..... + .......... +.+++++|+.......+........
T Consensus        90 ~~~~~~~~l~~~l~~~~---~~~d~iiiDtpG~~~~~~~~~-l-~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~  163 (262)
T 1yrb_A           90 RLMEKFNEYLNKILRLE---KENDYVLIDTPGQMETFLFHE-F-GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA  163 (262)
T ss_dssp             HHHTTHHHHHHHHHHHH---HHCSEEEEECCSSHHHHHHSH-H-HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHh---hcCCEEEEeCCCccchhhhhh-h-HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence                 122223333322   347999999999876543311 0 0001112245 7899999987543332211000000


Q ss_pred             hHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE---------------EeecCCCCchhhcccccC
Q 022736          179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI---------------RSVRCQVDLSEVLNCRAY  243 (293)
Q Consensus       179 ~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~---------------~~~~~~~~~~~i~~~sa~  243 (293)
                      .....+...+.++|+||+|+.+..    ....+.+.++.+++.+..+               ...........++++|++
T Consensus       164 ~~~~~~~~~p~~iv~NK~D~~~~~----~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~  239 (262)
T 1yrb_A          164 LLIDLRLGATTIPALNKVDLLSEE----EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAK  239 (262)
T ss_dssp             HHHHHHHTSCEEEEECCGGGCCHH----HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTT
T ss_pred             HHHhcccCCCeEEEEecccccccc----cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEec
Confidence            112344567899999999987643    1222333222111100000               000000011257899999


Q ss_pred             Ccchhhhhhhhhhhh
Q 022736          244 DATHVTRLEGLLEEH  258 (293)
Q Consensus       244 ~~~~~~~l~~~l~~~  258 (293)
                      +++|++++.+++.+.
T Consensus       240 ~~~gi~~l~~~i~~~  254 (262)
T 1yrb_A          240 TREGFEDLETLAYEH  254 (262)
T ss_dssp             TCTTHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHH
Confidence            999999999998654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.71  E-value=3.2e-17  Score=135.48  Aligned_cols=173  Identities=13%  Similarity=0.171  Sum_probs=100.3

Q ss_pred             cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcc
Q 022736           20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC   98 (293)
Q Consensus        20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~-vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gc   98 (293)
                      +..+.+.....+.+-++++|.+|+|||||+|+|+.    .+ ...+...+|.+......                     
T Consensus        11 s~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~----~~~~~~~~~~~~~t~~~~~~---------------------   65 (195)
T 1svi_A           11 SAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLIN----RKNLARTSSKPGKTQTLNFY---------------------   65 (195)
T ss_dssp             EESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHT----C-------------CCEEEE---------------------
T ss_pred             ecCChhhCCCCCCCEEEEECCCCCCHHHHHHHHhC----CCCccccCCCCCceeeEEEE---------------------
Confidence            44444555566788899999999999999999994    32 33344444431111100                     


Q ss_pred             eeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCc------HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhh
Q 022736           99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY  172 (293)
Q Consensus        99 icc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~------~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~  172 (293)
                                         ..+.++.++||||+.++      ....... ...++.....++++++|+|+.......+..
T Consensus        66 -------------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  125 (195)
T 1svi_A           66 -------------------IINDELHFVDVPGYGFAKVSKSEREAWGRM-IETYITTREELKAVVQIVDLRHAPSNDDVQ  125 (195)
T ss_dssp             -------------------EETTTEEEEECCCBCCCSSCHHHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH
T ss_pred             -------------------EECCcEEEEECCCCCccccCHHHHHHHHHH-HHHHHhhhhcCCEEEEEEECCCCCCHHHHH
Confidence                               01125789999997654      2222111 122333334568999999987643322210


Q ss_pred             cccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHh-hcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          173 RHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHE-INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       173 ~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~-lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                           +..++.+...+.++|+||+|+.+..+    .......+++ +...           ....++.+|+++|.|++++
T Consensus       126 -----~~~~~~~~~~p~i~v~nK~Dl~~~~~----~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gv~~l  185 (195)
T 1svi_A          126 -----MYEFLKYYGIPVIVIATKADKIPKGK----WDKHAKVVRQTLNID-----------PEDELILFSSETKKGKDEA  185 (195)
T ss_dssp             -----HHHHHHHTTCCEEEEEECGGGSCGGG----HHHHHHHHHHHHTCC-----------TTSEEEECCTTTCTTHHHH
T ss_pred             -----HHHHHHHcCCCEEEEEECcccCChHH----HHHHHHHHHHHHccc-----------CCCceEEEEccCCCCHHHH
Confidence                 22344445678999999999987653    2333333332 2210           1235788999999999999


Q ss_pred             hhhhhh
Q 022736          252 EGLLEE  257 (293)
Q Consensus       252 ~~~l~~  257 (293)
                      ..++.+
T Consensus       186 ~~~l~~  191 (195)
T 1svi_A          186 WGAIKK  191 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.71  E-value=4.1e-17  Score=145.11  Aligned_cols=167  Identities=20%  Similarity=0.249  Sum_probs=108.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..+.+.++|+|.+|+|||||+|+|+    +.++++++..++++.    .....    .                      
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~----g~~~~i~s~~~~tTr----~~~~g----i----------------------   50 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLL----GQKISITSRKAQTTR----HRIVG----I----------------------   50 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHH----TCSEEECCCCSSCCS----SCEEE----E----------------------
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHH----CCCccccCCCCCcce----eeEEE----E----------------------
Confidence            3577899999999999999999999    777887776666521    11100    0                      


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCC-CcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~-~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                            + ..++.++.++||||+. .+.......+..........+|.+++|+|+.. ....+..     +...+.+...
T Consensus        51 ------~-~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~-----i~~~l~~~~~  117 (301)
T 1ega_A           51 ------H-TEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEM-----VLNKLREGKA  117 (301)
T ss_dssp             ------E-EETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHH-----HHHHHHSSSS
T ss_pred             ------E-EECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHH-----HHHHHHhcCC
Confidence                  0 0234568899999987 44443333333344455567899999999976 3222210     2222333357


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |.++++||+|+.+..      ..+...++.+...          .++..++++|++++.|++.+.+++...
T Consensus       118 P~ilvlNK~D~~~~~------~~~~~~l~~l~~~----------~~~~~~i~iSA~~g~~v~~l~~~i~~~  172 (301)
T 1ega_A          118 PVILAVNKVDNVQEK------ADLLPHLQFLASQ----------MNFLDIVPISAETGLNVDTIAAIVRKH  172 (301)
T ss_dssp             CEEEEEESTTTCCCH------HHHHHHHHHHHTT----------SCCSEEEECCTTTTTTHHHHHHHHHTT
T ss_pred             CEEEEEECcccCccH------HHHHHHHHHHHHh----------cCcCceEEEECCCCCCHHHHHHHHHHh
Confidence            899999999998622      2333444433221          122457899999999999999888653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.68  E-value=6.1e-17  Score=137.36  Aligned_cols=183  Identities=22%  Similarity=0.317  Sum_probs=122.3

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .+.+.++|+|++|+|||||+++|+.. ....+++++.++++.  .+|...+...  +   ...+.+.+||+||....++.
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~--~---~~~~~~~~~~~~~l~~~~~~  108 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA--KFDAERMEKH--G---AKVVPLNTGKECHLDAHLVG  108 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT--HHHHHHHHTT--T---CEEEEEECTTCSSCCHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC--CccHHHHHhc--C---CcEEEecCCceEeccHHHHH
Confidence            46789999999999999999999975 334689999999984  4555554432  1   13456678999876555555


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCC-CcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~-~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                      +.+..+.  ..+++++++|++|.. .+..    +      .  ...+.++.++|+.......      ..+   ..++..
T Consensus       109 ~~~~~l~--~~~~d~~~id~~g~i~~~~s----~------~--~~~~~~~~v~~~~~~~~~~------~~~---~~~~~~  165 (226)
T 2hf9_A          109 HALEDLN--LDEIDLLFIENVGNLICPAD----F------D--LGTHKRIVVISTTEGDDTI------EKH---PGIMKT  165 (226)
T ss_dssp             HHHTTSC--GGGCSEEEEECCSCSSGGGG----C------C--CSCSEEEEEEEGGGCTTTT------TTC---HHHHTT
T ss_pred             HHHHHHh--cCCCCEEEEeCCCCccCcch----h------h--hccCcEEEEEecCcchhhH------hhh---hhHhhc
Confidence            4444332  246799999999942 2211    1      1  1123357788864322111      112   234678


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+++|+||+|+.+..+  .....+.+.++.+++.+             .++.+|+++|+|++++..++.+
T Consensus       166 ~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~-------------~~~~~Sa~~g~gv~~l~~~l~~  220 (226)
T 2hf9_A          166 ADLIVINKIDLADAVG--ADIKKMENDAKRINPDA-------------EVVLLSLKTMEGFDKVLEFIEK  220 (226)
T ss_dssp             CSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTS-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCEEEEeccccCchhH--HHHHHHHHHHHHhCCCC-------------eEEEEEecCCCCHHHHHHHHHH
Confidence            9999999999875321  13567777777766543             4578999999999999888754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.68  E-value=5.4e-17  Score=141.03  Aligned_cols=159  Identities=17%  Similarity=0.150  Sum_probs=101.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +|.++++|.+|+|||||+|+|+    |.+ ..+.+.+|.+.......+.                               
T Consensus         1 m~kI~lvG~~n~GKSTL~n~L~----g~~-~~v~~~pg~Tv~~~~~~~~-------------------------------   44 (256)
T 3iby_A            1 MTHALLIGNPNCGKTTLFNALT----NAN-QRVGNWPGVTVEKKTGEFL-------------------------------   44 (256)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHH----TTS-EEEEECTTSSSEEEEEEEE-------------------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHH----CCC-CCccCCCCceEEEEEEEEE-------------------------------
Confidence            4678999999999999999999    444 3456677753211111111                               


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHH-----HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPL-----ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~-----~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                            .++.++.|+||||+....+.     .+......++ ....+|++++|+|+++......       +...+....
T Consensus        45 ------~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~-~~~~~d~vi~VvDas~~~~~~~-------l~~~l~~~~  110 (256)
T 3iby_A           45 ------LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV-IDLEYDCIINVIDACHLERHLY-------LTSQLFELG  110 (256)
T ss_dssp             ------ETTEEEEEEECCCCSSCC------CHHHHHHHHHH-HHSCCSEEEEEEEGGGHHHHHH-------HHHHHTTSC
T ss_pred             ------ECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH-hhCCCCEEEEEeeCCCchhHHH-------HHHHHHHcC
Confidence                  12346789999998765431     1111111111 1146899999999998544322       223344456


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .|.++|+||+|+.+..........+.+.+.                  .+++++||++|+|++++.+++.+.
T Consensus       111 ~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg------------------~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          111 KPVVVALNMMDIAEHRGISIDTEKLESLLG------------------CSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             SCEEEEEECHHHHHHTTCEECHHHHHHHHC------------------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CCEEEEEEChhcCCcCCcHHHHHHHHHHcC------------------CCEEEEECCCCCCHHHHHHHHHhh
Confidence            799999999998765443334444444331                  257889999999999999988654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.66  E-value=1.6e-16  Score=139.40  Aligned_cols=158  Identities=18%  Similarity=0.187  Sum_probs=102.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      .+.|+++|.+|+|||||+|+|+    +.+ ..+.+.+|.+.......+.                               
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~----g~~-~~v~~~~g~t~~~~~~~~~-------------------------------   46 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLT----GSR-QRVGNWAGVTVERKEGQFS-------------------------------   46 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH----TTC-EEEEECTTSSSEEEEEEEE-------------------------------
T ss_pred             ccEEEEECCCCCCHHHHHHHHh----CCC-cccCCCCCeeEEEEEEEEE-------------------------------
Confidence            4568899999999999999999    555 4667778753221111111                               


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHH------HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLA------SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~------~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                            ..+..+.|+||||+.+.....      +.+. .. +.....+|.+++|+|+++......       +...+.+.
T Consensus        47 ------~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~-~~-~~~~~~~d~ii~VvD~~~~~~~~~-------~~~~l~~~  111 (274)
T 3i8s_A           47 ------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA-CH-YILSGDADLLINVVDASNLERNLY-------LTLQLLEL  111 (274)
T ss_dssp             ------CSSCEEEEEECCCCSCSCC----CCHHHHHH-HH-HHHHTCCSEEEEEEEGGGHHHHHH-------HHHHHHHH
T ss_pred             ------eCCCceEEEECcCCCccccccccCCHHHHHH-HH-HHhhcCCCEEEEEecCCChHHHHH-------HHHHHHhc
Confidence                  123467899999977644211      1111 11 112247899999999998554322       23344556


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ..|.++|+||+|+.+..........+.+.+.                  .+++++||++|+|++++..++.+.
T Consensus       112 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg------------------~~~i~~SA~~g~gi~el~~~i~~~  166 (274)
T 3i8s_A          112 GIPCIVALNMLDIAEKQNIRIEIDALSARLG------------------CPVIPLVSTRGRGIEALKLAIDRY  166 (274)
T ss_dssp             TCCEEEEEECHHHHHHTTEEECHHHHHHHHT------------------SCEEECCCGGGHHHHHHHHHHHTC
T ss_pred             CCCEEEEEECccchhhhhHHHHHHHHHHhcC------------------CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            7899999999998765433233344443331                  246889999999999999988654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.63  E-value=7.7e-16  Score=144.44  Aligned_cols=172  Identities=19%  Similarity=0.161  Sum_probs=89.1

Q ss_pred             cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce
Q 022736           20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI   99 (293)
Q Consensus        20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci   99 (293)
                      +.+--+....++.|.|+|+|.+|+|||||+|+|+    +.+.+++...+|.    ++......         .       
T Consensus        11 ~~~~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~----~~~~~~v~~~~g~----t~~~~~~~---------~-------   66 (456)
T 4dcu_A           11 SSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGV----TRDRIYSS---------A-------   66 (456)
T ss_dssp             ------------CCEEEEECSSSSSHHHHHHHHE----EEEEC---------------CEEEE---------C-------
T ss_pred             cCCCCCChhhcCCCEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCc----ceeEEEEE---------E-------
Confidence            4444445556678999999999999999999999    6777777777775    22211110         0       


Q ss_pred             eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736          100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP  179 (293)
Q Consensus       100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~  179 (293)
                                       ...+..+.++||||+..........+..........+|.+++|+|+.......+..     +.
T Consensus        67 -----------------~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~-----l~  124 (456)
T 4dcu_A           67 -----------------EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEE-----VA  124 (456)
T ss_dssp             -----------------TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHH-----HH
T ss_pred             -----------------EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHH-----HH
Confidence                             01345689999999764221111111111222335689999999997644433321     23


Q ss_pred             HHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       180 ~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ..+.+...+.++|+||+|+.+...      .    +.           ....+.+..++++||.+|.|++++.+++.+.
T Consensus       125 ~~l~~~~~pvilV~NK~D~~~~~~------~----~~-----------e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~  182 (456)
T 4dcu_A          125 KILYRTKKPVVLAVNKLDNTEMRA------N----IY-----------DFYSLGFGEPYPISGTHGLGLGDLLDAVAEH  182 (456)
T ss_dssp             HHHTTCCSCEEEEEECC-------------------C-----------CSGGGSSSSEEECCTTTCTTHHHHHHHHHTT
T ss_pred             HHHHHcCCCEEEEEECccchhhhh------h----HH-----------HHHHcCCCceEEeecccccchHHHHHHHHhh
Confidence            344455678999999999874321      0    00           0111234566899999999999998887654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.62  E-value=2.5e-15  Score=135.49  Aligned_cols=215  Identities=17%  Similarity=0.175  Sum_probs=123.7

Q ss_pred             EEEccccccccCccc-----CCCCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCC
Q 022736           12 VRIDETTHEFSNSHE-----NDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEG   84 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~-----~~~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~   84 (293)
                      +++.+++++|.....     +.-.+..+++|+|++|||||||+|.|+..  ..+.+++++..++++ ...+.......  
T Consensus        30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~-~~~~~~~~~~~--  106 (337)
T 2qm8_A           30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS-TRTGGSILGDK--  106 (337)
T ss_dssp             HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG-GSSCCCSSCCG--
T ss_pred             HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc-cccccchHHHh--
Confidence            455666666643222     12345678999999999999999999863  346789999988865 21111111100  


Q ss_pred             CcchhhhhhccCcce-----eeccchhHHHHHHHHH-hhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEE
Q 022736           85 GALVEEWVELANGCI-----CCTVKHSLVQALEQLV-QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT  158 (293)
Q Consensus        85 ~~~~~~~~~l~~gci-----cc~~~~~l~~~l~~l~-~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~  158 (293)
                       ..+..+.+-.+.|+     ||++.+....+.+.+. ....+++++||||||+.++....           ...+|.+++
T Consensus       107 -~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v-----------~~~~d~vl~  174 (337)
T 2qm8_A          107 -TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV-----------ADLTDFFLV  174 (337)
T ss_dssp             -GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH-----------HTTSSEEEE
T ss_pred             -hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH-----------HhhCCEEEE
Confidence             00111222344554     4666555555544432 22468999999999998764222           146788999


Q ss_pred             EEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCC-CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhh
Q 022736          159 VVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPER-SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV  237 (293)
Q Consensus       159 vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~-~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i  237 (293)
                      ++|+..... ...   .   ..  ...+.++++++||+|+....+ ......++...+..++|...      +  ...++
T Consensus       175 v~d~~~~~~-~~~---i---~~--~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~------~--~~~~v  237 (337)
T 2qm8_A          175 LMLPGAGDE-LQG---I---KK--GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSA------T--WTPPV  237 (337)
T ss_dssp             EECSCC----------C---CT--THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBT------T--BCCCE
T ss_pred             EEcCCCccc-HHH---H---HH--HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhcccccc------C--CCCCE
Confidence            999864321 110   0   00  113568999999999865321 00011223333333333110      0  01356


Q ss_pred             cccccCCcchhhhhhhhhhhh
Q 022736          238 LNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       238 ~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+|+.+++|+++|.+++.+.
T Consensus       238 l~~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          238 VTISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHH
Confidence            779999999999999888654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.62  E-value=7e-16  Score=134.98  Aligned_cols=160  Identities=17%  Similarity=0.247  Sum_probs=99.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +.+.++++|.+|||||||+|+|+    +.+. .+.+.+|.+.......+.                              
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~----g~~~-~~~~~~~~t~~~~~~~~~------------------------------   46 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALT----GLRQ-HVGNWPGVTVEKKEGIME------------------------------   46 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHH----TTCE-EEEECTTSSCEEEEEEEE------------------------------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHh----CCCc-ccCCCCCeEEEeeEEEEE------------------------------
Confidence            35678999999999999999999    5444 455666642221111111                              


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-cc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FA  188 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a  188 (293)
                             ..+..+.|+||||+....... ....... +-....+|.+++|+|+++.......       ...+.... .|
T Consensus        47 -------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~d~vi~v~D~~~~~~~~~~-------~~~~~~~~~~p  111 (271)
T 3k53_A           47 -------YREKEFLVVDLPGIYSLTAHSIDELIARN-FILDGNADVIVDIVDSTCLMRNLFL-------TLELFEMEVKN  111 (271)
T ss_dssp             -------ETTEEEEEEECCCCSCCCSSCHHHHHHHH-HHHTTCCSEEEEEEEGGGHHHHHHH-------HHHHHHTTCCS
T ss_pred             -------ECCceEEEEeCCCccccccCCHHHHHHHH-hhhccCCcEEEEEecCCcchhhHHH-------HHHHHhcCCCC
Confidence                   123457899999977543211 0011011 1112468899999999986543321       12223344 78


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .++|+||+|+.+..........+.+.+.                  .+++++|+.+|.|++++.+++...
T Consensus       112 ~ilv~NK~Dl~~~~~~~~~~~~l~~~lg------------------~~~~~~Sa~~g~gi~~l~~~i~~~  163 (271)
T 3k53_A          112 IILVLNKFDLLKKKGAKIDIKKMRKELG------------------VPVIPTNAKKGEGVEELKRMIALM  163 (271)
T ss_dssp             EEEEEECHHHHHHHTCCCCHHHHHHHHS------------------SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             EEEEEEChhcCcccccHHHHHHHHHHcC------------------CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            9999999997654332233444444432                  246789999999999998888653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.61  E-value=9e-16  Score=133.45  Aligned_cols=160  Identities=16%  Similarity=0.116  Sum_probs=98.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +...++++|.+|+|||||+|+|+    +.+.. +.+.+|.+.......+.                              
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~----g~~~~-~~~~pg~tv~~~~~~~~------------------------------   48 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALT----GTKQY-VANWPGVTVEKKEGVFT------------------------------   48 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHH----TTCEE-EEECTTSCCEEEEEEEE------------------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHH----CCCCc-ccCCCCceEEEEEEEEE------------------------------
Confidence            45668899999999999999999    44433 56666652221111110                              


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                             ..+.++.|+||||.....+.. +......++. ...+|++++|+|+++......       +...+.....|.
T Consensus        49 -------~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~~d~ii~V~D~t~~~~~~~-------~~~~l~~~~~pv  113 (258)
T 3a1s_A           49 -------YKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-KGDADLVILVADSVNPEQSLY-------LLLEILEMEKKV  113 (258)
T ss_dssp             -------ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-HSCCSEEEEEEETTSCHHHHH-------HHHHHHTTTCCE
T ss_pred             -------ECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-hcCCCEEEEEeCCCchhhHHH-------HHHHHHhcCCCE
Confidence                   123568899999976543211 0000011111 146789999999988654332       122333446789


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ++|+||+|+.+.........++.+.+.                  -+++.+||++|.|++++..++.+.
T Consensus       114 ilv~NK~Dl~~~~~i~~~~~~l~~~lg------------------~~vi~~SA~~g~gi~el~~~i~~~  164 (258)
T 3a1s_A          114 ILAMTAIDEAKKTGMKIDRYELQKHLG------------------IPVVFTSSVTGEGLEELKEKIVEY  164 (258)
T ss_dssp             EEEEECHHHHHHTTCCBCHHHHHHHHC------------------SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEECcCCCCccchHHHHHHHHHHcC------------------CCEEEEEeeCCcCHHHHHHHHHHH
Confidence            999999998754332223344433331                  246889999999999999887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.61  E-value=1.4e-15  Score=141.93  Aligned_cols=160  Identities=20%  Similarity=0.178  Sum_probs=87.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      .|.|+|+|.+|+|||||+|+|+    +.+.+++...+|.    +++.....         .                   
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~----T~d~~~~~---------~-------------------   46 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGV----TRDRIYSS---------A-------------------   46 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHE----EEECC---------------CEEEE---------C-------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCC----ccceEEEE---------E-------------------
Confidence            4789999999999999999999    5666777777775    22221110         0                   


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV  191 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii  191 (293)
                           ...+.++.|+||||+.....-....+..........+|++++|+|+.......+..     +...+.....+.++
T Consensus        47 -----~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~-----~~~~l~~~~~pvil  116 (436)
T 2hjg_A           47 -----EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEE-----VAKILYRTKKPVVL  116 (436)
T ss_dssp             -----TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHTTCCSCEEE
T ss_pred             -----EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEE
Confidence                 01345689999999753211111111111223345789999999998654433221     23334445678999


Q ss_pred             EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+||+|+.+....                ..     ....+.+.+++++||.+|.|+++|.+++.+.
T Consensus       117 v~NK~D~~~~~~~----------------~~-----~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~  162 (436)
T 2hjg_A          117 AVNKLDNTEMRAN----------------IY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVAEH  162 (436)
T ss_dssp             EEECCCC-----C----------------CC-----SSGGGSSCCCEECBTTTTBTHHHHHHHHHHT
T ss_pred             EEECccCccchhh----------------HH-----HHHHcCCCCeEEEeCcCCCChHHHHHHHHHh
Confidence            9999998753210                00     0111234468899999999999999988654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.59  E-value=9.9e-16  Score=143.06  Aligned_cols=161  Identities=20%  Similarity=0.244  Sum_probs=89.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +|.++|+|.+|+|||||+|+|+    +.+.+++...+|.    +++....         .++                  
T Consensus         1 ~~~v~ivG~pnvGKStL~nrl~----~~~~~~v~~~~g~----T~d~~~~---------~~~------------------   45 (439)
T 1mky_A            1 MATVLIVGRPNVGKSTLFNKLV----KKKKAIVEDEEGV----TRDPVQD---------TVE------------------   45 (439)
T ss_dssp             -CEEEEECCTTSSHHHHHHHHH----C------------------CCSEE---------EEE------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHh----CCCCceecCCCCC----ccceeeE---------EEE------------------
Confidence            4789999999999999999999    6777777877775    2222111         000                  


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          112 EQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                            ..+.++.++||||+.... ......+..........+|++++|+|+.......+..     +..++.....+.+
T Consensus        46 ------~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~-----i~~~l~~~~~p~i  114 (439)
T 1mky_A           46 ------WYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDES-----LADFLRKSTVDTI  114 (439)
T ss_dssp             ------ETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHH-----HHHHHHHHTCCEE
T ss_pred             ------ECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEE
Confidence                  123457899999976421 1000001111223346789999999997643332211     2344555678899


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+||+|+.+..     ...+.   ....           .+.+.+++++||.+|.|+++|.+++.+
T Consensus       115 lv~NK~D~~~~~-----~~~~~---~~~~-----------~lg~~~~~~iSA~~g~gv~~L~~~i~~  162 (439)
T 1mky_A          115 LVANKAENLREF-----EREVK---PELY-----------SLGFGEPIPVSAEHNINLDTMLETIIK  162 (439)
T ss_dssp             EEEESCCSHHHH-----HHHTH---HHHG-----------GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             EEEeCCCCcccc-----HHHHH---HHHH-----------hcCCCCEEEEeccCCCCHHHHHHHHHH
Confidence            999999975320     01110   1111           112345789999999999999888754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.57  E-value=1.8e-15  Score=142.21  Aligned_cols=160  Identities=20%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+|+|.+|+|||||+|+|+    +.+.+++...+|++.......+             .                     
T Consensus       236 V~ivG~~nvGKSSLln~L~----~~~~a~vs~~~gtT~d~~~~~i-------------~---------------------  277 (476)
T 3gee_A          236 TVIAGKPNAGKSTLLNTLL----GQERAIVSHMPGTTRDYIEECF-------------I---------------------  277 (476)
T ss_dssp             EEEECCTTSSHHHHHHHCC----------------------CEEE-------------E---------------------
T ss_pred             EEEECCCCCCHHHHHHHHh----CCCCcccCCCCCceEEEEEEEE-------------E---------------------
Confidence            7889999999999999999    5556677777775222111101             0                     


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCEEEE
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVIL  193 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~iivl  193 (293)
                         .++..+.|+||||+.++....+.+...........+|.+++|+|++........ .   ....++.++ ..+.++|+
T Consensus       278 ---~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~---~~~~~l~~l~~~piIvV~  350 (476)
T 3gee_A          278 ---HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDEL-T---EIRELKAAHPAAKFLTVA  350 (476)
T ss_dssp             ---ETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGH-H---HHHHHHHHCTTSEEEEEE
T ss_pred             ---ECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhh-H---HHHHHHHhcCCCCEEEEE
Confidence               133468999999998766555544444445566789999999999864321000 0   011222222 46889999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      ||+|+.+...    ...  +.+...+              ...++.+||++|+|++++.+++.+..
T Consensus       351 NK~Dl~~~~~----~~~--~~l~~~~--------------~~~~i~vSAktg~GI~eL~~~i~~~~  396 (476)
T 3gee_A          351 NKLDRAANAD----ALI--RAIADGT--------------GTEVIGISALNGDGIDTLKQHMGDLV  396 (476)
T ss_dssp             ECTTSCTTTH----HHH--HHHHHHH--------------TSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred             ECcCCCCccc----hhH--HHHHhcC--------------CCceEEEEECCCCCHHHHHHHHHHHH
Confidence            9999987642    111  2222210              12468899999999999999987643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.56  E-value=4.2e-15  Score=130.14  Aligned_cols=157  Identities=21%  Similarity=0.260  Sum_probs=95.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ...++++|.+|+|||||+|+|+..    + ..+.+.+|.+.......+                                
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~----~-~~v~~~pg~tv~~~~~~~--------------------------------   45 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH----N-QRVGNWPGVTVERKSGLV--------------------------------   45 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC----C-CCCCSSSCCCCSCEEEEC--------------------------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC----C-CcccCCCCCcEEEEEEEE--------------------------------
Confidence            356889999999999999999953    2 123455554211100000                                


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHH--HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~--~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                           .. +.++.++||||.....+.  .+.+. ..++. ....|++++|+|+++......       +...+.+...|.
T Consensus        46 -----~~-~~~l~l~DtpG~~~~~~~~~~e~v~-~~~~~-~~~~d~vi~V~D~t~~e~~~~-------~~~~l~~~~~p~  110 (272)
T 3b1v_A           46 -----KK-NKDLEIQDLPGIYSMSPYSPEAKVA-RDYLL-SQRADSILNVVDATNLERNLY-------LTTQLIETGIPV  110 (272)
T ss_dssp             -----TT-CTTEEEEECCCCSCSSCSSHHHHHH-HHHHH-TTCCSEEEEEEEGGGHHHHHH-------HHHHHHHTCSCE
T ss_pred             -----ec-CCeEEEEECCCcCccCCCChHHHHH-HHHHh-cCCCCEEEEEecCCchHhHHH-------HHHHHHhcCCCE
Confidence                 01 356889999997654311  11111 11121 135889999999987644321       122233346789


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ++++||+|+.+..........+.+.+.                  .+++++||++|+|++++..++.+.
T Consensus       111 ilv~NK~Dl~~~~~~~~~~~~l~~~lg------------------~~vi~~SA~~g~gi~el~~~i~~~  161 (272)
T 3b1v_A          111 TIALNMIDVLDGQGKKINVDKLSYHLG------------------VPVVATSALKQTGVDQVVKKAAHT  161 (272)
T ss_dssp             EEEEECHHHHHHTTCCCCHHHHHHHHT------------------SCEEECBTTTTBSHHHHHHHHHHS
T ss_pred             EEEEEChhhCCcCCcHHHHHHHHHHcC------------------CCEEEEEccCCCCHHHHHHHHHHH
Confidence            999999998654322123334433331                  246889999999999999888653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.56  E-value=7.6e-15  Score=140.44  Aligned_cols=153  Identities=19%  Similarity=0.238  Sum_probs=85.2

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCC-----------CCeEEEEEcCCCCccccchhhhhcCCCCcchhhh----hhc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKH-----------GKRIAVILNEFGEEIGVERAMINEGEGGALVEEW----VEL   94 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~-----------~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~----~~l   94 (293)
                      .+.|.|+|+|.+|+|||||+|+|+....           ....+++.++.+. ...+..++.+.  ......+    ..+
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~-i~~g~~l~~~~--~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEG-TVPGNALVVDP--EKPFRKLNPFGNTF  139 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSE-EECCC--------------------CC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCccc-ccCCceeeecC--cccHHHHhhhcccc
Confidence            4679999999999999999999996421           0113444444432 22222222110  0000000    123


Q ss_pred             cCcceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHH--HHHhh-hcchhhccccccccEEEEEcccch-HHHHh
Q 022736           95 ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAP--LASVL-WLDDQLESAVRLDSIITVVDAKNL-LFQID  170 (293)
Q Consensus        95 ~~gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~--~~~~~-~~~~~~~~~~~~d~vi~vvDa~~~-~~~~~  170 (293)
                      .+||+||+.+.++..            +++||||||+.++..  +.+.+ +..........+|.+++|+|+... .....
T Consensus       140 ~~~~~~~~~~~~ll~------------~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~  207 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLE------------SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF  207 (550)
T ss_dssp             CTTEEEEECCCHHHH------------HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH
T ss_pred             cccceEEeccccccC------------CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH
Confidence            489999999977653            267999999886322  11110 001111223578999999999763 11111


Q ss_pred             hhcccCCchHHHHHHhccCEEEEeCCCCCCCC
Q 022736          171 KYRHLSSYPEAIHQIAFADVVILNKVDLVSPE  202 (293)
Q Consensus       171 ~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~  202 (293)
                      .     .+...+.+...+.++|+||+|+++.+
T Consensus       208 ~-----~~l~~l~~~~~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          208 S-----EAIGALRGHEDKIRVVLNKADMVETQ  234 (550)
T ss_dssp             H-----HHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred             H-----HHHHHHHhcCCCEEEEEECCCccCHH
Confidence            0     02233344456889999999999754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.55  E-value=4.5e-14  Score=114.04  Aligned_cols=156  Identities=13%  Similarity=0.059  Sum_probs=85.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ..-++++|.+|+|||||+|+|+.    .+........|.    +....           .+.+.                
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~----~~~~~~~~~~~~----~~~~~-----------~~~~~----------------   48 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG----KQERDLHEQLGE----DVYER-----------TLTVD----------------   48 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC----C-----CCCSSS----SEEEE-----------EEEET----------------
T ss_pred             EEEEEEECCCCccHHHHHHHHhc----CCCccccCcccc----ceeEE-----------EEEEC----------------
Confidence            45688899999999999999994    333333333332    11000           00000                


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCc--HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----H
Q 022736          112 EQLVQRKERLDHILLETTGLANP--APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----I  185 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~--~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i  185 (293)
                            .....+.++||||....  ..+...        .....+.+++|+|..+....... .   .+...+.+    -
T Consensus        49 ------~~~~~~~~~D~~g~~~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~-~---~~~~~l~~~~~~~  110 (175)
T 2nzj_A           49 ------GEDTTLVVVDTWEAEKLDKSWSQES--------CLQGGSAYVIVYSIADRGSFESA-S---ELRIQLRRTHQAD  110 (175)
T ss_dssp             ------TEEEEEEEECCC-------CHHHHH--------TTTSCSEEEEEEETTCHHHHHHH-H---HHHHHHHHCC---
T ss_pred             ------CEEEEEEEEecCCCCccchhhhHHh--------hcccCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhhccC
Confidence                  11235789999997652  111111        11346889999999865432111 0   01111221    1


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ..|.++|+||+|+.+..+.  ..+......+..+               ..++.+||++|+|++++..++.+
T Consensus       111 ~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~  165 (175)
T 2nzj_A          111 HVPIILVGNKADLARCREV--SVEEGRACAVVFD---------------CKFIETSATLQHNVAELFEGVVR  165 (175)
T ss_dssp             -CCEEEEEECTTCTTTCCS--CHHHHHHHHHHHT---------------SEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhcccccc--CHHHHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHH
Confidence            4678999999999865432  2333333333322               24678999999999999988854

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.55  E-value=3.1e-14  Score=117.66  Aligned_cols=160  Identities=17%  Similarity=0.150  Sum_probs=93.4

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ....+-|+|+|.+|+|||||+++|+.    .+...+...+.  .+.....+.                            
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~----~~~~~~~~~~t--~~~~~~~~~----------------------------   59 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKP----AQSSSKHITAT--VGYNVETFE----------------------------   59 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSC----CC----CCCCC--SSEEEEEEE----------------------------
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhc----CCCcccccccc--cceeEEEEE----------------------------
Confidence            44667789999999999999999994    33222211111  221111110                            


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--H-
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-  185 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i-  185 (293)
                               .....+.|+||||..........        ....+|++|+|+|+...........   .+..+...  + 
T Consensus        60 ---------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~D~~~~~s~~~~~~---~~~~~~~~~~~~  119 (199)
T 4bas_A           60 ---------KGRVAFTVFDMGGAKKFRGLWET--------YYDNIDAVIFVVDSSDHLRLCVVKS---EIQAMLKHEDIR  119 (199)
T ss_dssp             ---------ETTEEEEEEEECCSGGGGGGGGG--------GCTTCSEEEEEEETTCGGGHHHHHH---HHHHHHTSHHHH
T ss_pred             ---------eCCEEEEEEECCCCHhHHHHHHH--------HHhcCCEEEEEEECCcHHHHHHHHH---HHHHHHhChhhh
Confidence                     13456889999998654333321        2246899999999987533211100   01111111  1 


Q ss_pred             -------hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc--CCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          186 -------AFADVVILNKVDLVSPERSGDSLDELEKEIHEIN--SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       186 -------~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln--p~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                             ..+.++|+||+|+.+...    ..++...+....  ..           ....++.+||++|+|++++..++.
T Consensus       120 ~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~g~gv~~l~~~l~  184 (199)
T 4bas_A          120 RELPGGGRVPFLFFANKMDAAGAKT----AAELVEILDLTTLMGD-----------HPFVIFASNGLKGTGVHEGFSWLQ  184 (199)
T ss_dssp             SBCTTSCBCCEEEEEECTTSTTCCC----HHHHHHHHTHHHHHTT-----------SCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             hcccccCCCCEEEEEECcCCCCCCC----HHHHHHHhcchhhccC-----------CeeEEEEeeCCCccCHHHHHHHHH
Confidence                   568899999999987642    344444443110  00           012578899999999999998886


Q ss_pred             h
Q 022736          257 E  257 (293)
Q Consensus       257 ~  257 (293)
                      +
T Consensus       185 ~  185 (199)
T 4bas_A          185 E  185 (199)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.55  E-value=4.6e-15  Score=118.32  Aligned_cols=158  Identities=21%  Similarity=0.233  Sum_probs=89.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +|-++++|.+|+|||||+|+|+..    +.......++.+.......+             .                  
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~~~~~~~~~~-------------~------------------   45 (161)
T 2dyk_A            1 MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVV-------------E------------------   45 (161)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHC----CC-----------CCEEEEE-------------E------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC----CeeeccCCCCceecceEEEE-------------E------------------
Confidence            367899999999999999999953    22222333332110000000             0                  


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV  191 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii  191 (293)
                            ..+.++.++||||..........+ ..........++.+++++|+..........     +..++.+...+.++
T Consensus        46 ------~~~~~~~l~Dt~G~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~p~il  113 (161)
T 2dyk_A           46 ------TDRGRFLLVDTGGLWSGDKWEKKI-QEKVDRALEDAEVVLFAVDGRAELTQADYE-----VAEYLRRKGKPVIL  113 (161)
T ss_dssp             ------ETTEEEEEEECGGGCSSSSCCHHH-HHHHHHHTTTCSEEEEEEESSSCCCHHHHH-----HHHHHHHHTCCEEE
T ss_pred             ------eCCceEEEEECCCCCCccchHHHH-HHHHHHHHHhCCEEEEEEECCCcccHhHHH-----HHHHHHhcCCCEEE
Confidence                  122357899999976532111000 011112235678999999998643222211     23344455678999


Q ss_pred             EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+||+|+.+..+   ...       .+.           ......++.+|+++|.|++++..++.+
T Consensus       114 v~nK~Dl~~~~~---~~~-------~~~-----------~~~~~~~~~~Sa~~~~gv~~l~~~l~~  158 (161)
T 2dyk_A          114 VATKVDDPKHEL---YLG-------PLY-----------GLGFGDPIPTSSEHARGLEELLEAIWE  158 (161)
T ss_dssp             EEECCCSGGGGG---GCG-------GGG-----------GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             EEECcccccchH---hHH-------HHH-----------hCCCCCeEEEecccCCChHHHHHHHHH
Confidence            999999976431   001       110           112236789999999999999988754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.54  E-value=7.3e-15  Score=137.82  Aligned_cols=169  Identities=20%  Similarity=0.281  Sum_probs=102.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ...+-++++|.+|+|||||+|+|+    +.....+...+|++...-...+.                             
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~----~~~~~~~~~~~gtt~~~~~~~~~-----------------------------  239 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAML----GEERVIVSNVAGTTRDAVDTSFT-----------------------------  239 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHH----TSTTEEECC------CTTSEEEE-----------------------------
T ss_pred             cccceeEEecCCCCCHHHHHHHHh----CCCccccCCCCCeEEEEEEEEEE-----------------------------
Confidence            346678899999999999999999    44445666666652211000000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                              ..+..+.|+||||+.+.....   +.+.....+.....+|++++|+|+.......+..     +...+....
T Consensus       240 --------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~-----~~~~~~~~~  306 (456)
T 4dcu_A          240 --------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----IAGYAHEAG  306 (456)
T ss_dssp             --------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTT
T ss_pred             --------ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHH-----HHHHHHHcC
Confidence                    123368899999975432111   1111111223345688999999998643332211     233444456


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+.++|+||+|+.+..+  ...+++.+.++...+.          ....+++.+||++|.|++++..++.
T Consensus       307 ~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~SA~~g~gv~~l~~~i~  364 (456)
T 4dcu_A          307 KAVVIVVNKWDAVDKDE--STMKEFEENIRDHFQF----------LDYAPILFMSALTKKRIHTLMPAII  364 (456)
T ss_dssp             CEEEEEEECGGGSCCCS--SHHHHHHHHHHHHCGG----------GTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred             CCEEEEEEChhcCCCch--HHHHHHHHHHHHhccc----------CCCCCEEEEcCCCCcCHHHHHHHHH
Confidence            78999999999987543  2456666666655332          1234678899999999998877664

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.53  E-value=1.9e-14  Score=130.93  Aligned_cols=170  Identities=21%  Similarity=0.248  Sum_probs=92.6

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      +..+++++|+|++|||||||+|+|+.    ... .+.+.++++.+.....+             .               
T Consensus       176 ~~~~~~V~lvG~~naGKSTLln~L~~----~~~-~~~~~~~~T~d~~~~~i-------------~---------------  222 (364)
T 2qtf_A          176 RNNIPSIGIVGYTNSGKTSLFNSLTG----LTQ-KVDTKLFTTMSPKRYAI-------------P---------------  222 (364)
T ss_dssp             ---CCEEEEECBTTSSHHHHHHHHHC----C------------CCSCEEEE-------------E---------------
T ss_pred             hcCCcEEEEECCCCCCHHHHHHHHHC----CCc-cccCCcccccCCEEEEE-------------E---------------
Confidence            34578899999999999999999994    332 33444444222111111             1               


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-
Q 022736          109 QALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-  185 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-  185 (293)
                               .++..+.++||+|+..  |....+.+  ...+.....+|.+++|+|+++........  ...+...+.++ 
T Consensus       223 ---------~~g~~v~l~DT~G~i~~lp~~lve~f--~~tl~~~~~aD~il~VvD~s~~~~~~~~~--~~~~~~~L~~l~  289 (364)
T 2qtf_A          223 ---------INNRKIMLVDTVGFIRGIPPQIVDAF--FVTLSEAKYSDALILVIDSTFSENLLIET--LQSSFEILREIG  289 (364)
T ss_dssp             ---------ETTEEEEEEECCCBCSSCCGGGHHHH--HHHHHGGGGSSEEEEEEETTSCHHHHHHH--HHHHHHHHHHHT
T ss_pred             ---------ECCEEEEEEeCCCchhcCCHHHHHHH--HHHHHHHHhCCEEEEEEECCCCcchHHHH--HHHHHHHHHHhC
Confidence                     1123467999999633  33333322  22344556789999999987643111100  00012333443 


Q ss_pred             --hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh-cCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          186 --AFADVVILNKVDLVSPERSGDSLDELEKEIHEI-NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       186 --~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l-np~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                        ..+.++|.||+|+.+.... .....+.+..+.+ .+.             ..++++|+++++|++++.+++.+.
T Consensus       290 ~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~l~~~l~~~~-------------~~~~~~SA~~g~gi~~L~~~I~~~  351 (364)
T 2qtf_A          290 VSGKPILVTLNKIDKINGDLY-KKLDLVEKLSKELYSPI-------------FDVIPISALKRTNLELLRDKIYQL  351 (364)
T ss_dssp             CCSCCEEEEEECGGGCCSCHH-HHHHHHHHHHHHHCSCE-------------EEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCchHH-HHHHHHHHHHHHhcCCC-------------CcEEEEECCCCcCHHHHHHHHHHH
Confidence              3578999999999864310 0111222222433 211             235789999999999999888653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.53  E-value=3e-15  Score=121.85  Aligned_cols=156  Identities=17%  Similarity=0.194  Sum_probs=89.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .-++|+|.+|+|||||+|+|...    +.+.+...++++..    ....         .+.                   
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~----~~~~~~~~~~~t~~----~~~~---------~~~-------------------   48 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR----EAAIVTDIAGTTRD----VLRE---------HIH-------------------   48 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS----CCSCCCSSTTCCCS----CEEE---------EEE-------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC----CcceeeCCCCceec----eeeE---------EEE-------------------
Confidence            34788999999999999999943    22233444443111    1100         000                   


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccC
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFAD  189 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~  189 (293)
                           .++..+.++||||+.+.....+.+...........+|.+++|+|+.........     .+...+.+.   ..|.
T Consensus        49 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-----~~~~~~~~~~~~~~p~  118 (172)
T 2gj8_A           49 -----IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-----EIWPEFIARLPAKLPI  118 (172)
T ss_dssp             -----ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHH-----HHCHHHHHHSCTTCCE
T ss_pred             -----ECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHHHHhcccCCCE
Confidence                 112346799999986543222211111122234578899999999754321100     011122221   3578


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ++|+||+|+.+...                   .... .    ....++.+||++|+|++++..++.+.
T Consensus       119 ilv~NK~Dl~~~~~-------------------~~~~-~----~~~~~~~~SA~~g~gv~~l~~~l~~~  163 (172)
T 2gj8_A          119 TVVRNKADITGETL-------------------GMSE-V----NGHALIRLSARTGEGVDVLRNHLKQS  163 (172)
T ss_dssp             EEEEECHHHHCCCC-------------------EEEE-E----TTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEECccCCcchh-------------------hhhh-c----cCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999864321                   1111 1    12357899999999999999988654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.53  E-value=2.2e-14  Score=118.43  Aligned_cols=160  Identities=16%  Similarity=0.143  Sum_probs=93.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-|+|+|.+|+|||||+|+|+......   ......|    .+.....           +.+.              
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~----~~~~~~~-----------~~~~--------------   68 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH---NISPTIG----ASFMTKT-----------VPCG--------------   68 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCT---TCCCCSS----EEEEEEE-----------EECS--------------
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCC---CcCCCcc----eeEEEEE-----------EEeC--------------
Confidence            344558889999999999999999642100   0111111    1110000           0000              


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---h
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---A  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~  186 (293)
                              .....+.|+||||..........        ....+|.+++|+|+..........    .+...+.+.   .
T Consensus        69 --------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~iilV~d~~~~~s~~~~~----~~~~~i~~~~~~~  128 (192)
T 2fg5_A           69 --------NELHKFLIWDTAGQERFHSLAPM--------YYRGSAAAVIVYDITKQDSFYTLK----KWVKELKEHGPEN  128 (192)
T ss_dssp             --------SSEEEEEEEEECCSGGGGGGTHH--------HHTTCSEEEEEEETTCTHHHHHHH----HHHHHHHHHSCTT
T ss_pred             --------CEEEEEEEEcCCCchhhHhhhHH--------hhccCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhCCCC
Confidence                    12345789999996543332221        124578899999997654322110    012222222   4


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+.++|+||+|+.+..+  ...+++.+..+..+               ..++.+|++++.|++++..++.+.
T Consensus       129 ~piiiv~NK~Dl~~~~~--v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~  183 (192)
T 2fg5_A          129 IVMAIAGNKCDLSDIRE--VPLKDAKEYAESIG---------------AIVVETSAKNAINIEELFQGISRQ  183 (192)
T ss_dssp             CEEEEEEECGGGGGGCC--SCHHHHHHHHHTTT---------------CEEEECBTTTTBSHHHHHHHHHHT
T ss_pred             CcEEEEEECcccccccc--cCHHHHHHHHHHcC---------------CEEEEEeCCCCcCHHHHHHHHHHH
Confidence            57899999999975432  23455555554332               246789999999999999998654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.52  E-value=1.7e-14  Score=115.73  Aligned_cols=153  Identities=16%  Similarity=0.085  Sum_probs=80.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      -++++|.+|+|||||+|+|+    +.........+|.+.  +...              .+.                  
T Consensus         4 ki~~vG~~~~GKSsli~~l~----~~~~~~~~~~~~~~~--~~~~--------------~~~------------------   45 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG----GVEDGPEAEAAGHTY--DRSI--------------VVD------------------   45 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC----CC----------CEE--EEEE--------------EET------------------
T ss_pred             EEEEECCCCCCHHHHHHHHc----CccccCCCCccccce--EEEE--------------EEC------------------
Confidence            37889999999999999998    433333333344311  1000              000                  


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccC
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFAD  189 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~  189 (293)
                          .....+.++||||......+...+        ....+.+++|+|..+........ .   +...+.+    -..|.
T Consensus        46 ----~~~~~~~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~-~---~~~~~~~~~~~~~~p~  109 (166)
T 3q72_A           46 ----GEEASLMVYDIWEQDGGRWLPGHC--------MAMGDAYVIVYSVTDKGSFEKAS-E---LRVQLRRARQTDDVPI  109 (166)
T ss_dssp             ----TEEEEEEEEECC-----------------------CCEEEEEEETTCHHHHHHHH-H---HHHHHHHCC---CCCE
T ss_pred             ----CEEEEEEEEECCCCccchhhhhhh--------hhhCCEEEEEEECCCHHHHHHHH-H---HHHHHHHhcCCCCCCE
Confidence                122457899999976544333222        24578899999998654322110 0   1111111    23578


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ++|+||+|+.+..+.  .........+..+               ..++.+||++|+|++++..++.+
T Consensus       110 ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  160 (166)
T 3q72_A          110 ILVGNKSDLVRSREV--SVDEGRACAVVFD---------------CKFIETSAALHHNVQALFEGVVR  160 (166)
T ss_dssp             EEEEECTTCCSSCCS--CHHHHHHHHHHTT---------------CEEEECBGGGTBSHHHHHHHHHH
T ss_pred             EEEEecccccccccc--CHHHHHHHHHHhC---------------CcEEEeccCCCCCHHHHHHHHHH
Confidence            999999999865432  3333333333322               24678999999999999888754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.51  E-value=3e-14  Score=118.55  Aligned_cols=167  Identities=13%  Similarity=0.111  Sum_probs=90.1

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-++++|.+|+|||||++++..    .+........+    .+...+             .                 
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~----~~~~~~~~t~~----~~~~~~-------------~-----------------   65 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD----DRLGQHVPTLH----PTSEEL-------------T-----------------   65 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC----C------CCCC----CSCEEE-------------E-----------------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc----CCCCccCCCCC----ceeEEE-------------E-----------------
Confidence            344578999999999999999984    33322221111    111100             0                 


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~  187 (293)
                             .++.++.++||||......+...        ....+|.+++|+|+.+.........   .+.....   ....
T Consensus        66 -------~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~~~~---~~~~~~~~~~~~~~  127 (198)
T 1f6b_A           66 -------IAGMTFTTFDLGGHIQARRVWKN--------YLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANV  127 (198)
T ss_dssp             -------ETTEEEEEEEECC----CCGGGG--------GGGGCSEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTTS
T ss_pred             -------ECCEEEEEEECCCcHhhHHHHHH--------HHhcCCEEEEEEECCCHHHHHHHHH---HHHHHHhCcccCCC
Confidence                   12246789999996543322211        1246789999999986532211100   0111111   1246


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEE--eecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR--SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~--~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |.++|.||+|+.+..    ..+++.+.++........-.  ..........++.+||++|+|++++.+|+.+
T Consensus       128 piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          128 PILILGNKIDRPEAI----SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             CEEEEEECTTSTTCC----CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             cEEEEEECCCccccC----CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence            789999999997632    34666666553321000000  0000011246789999999999999998864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.51  E-value=3.1e-14  Score=116.70  Aligned_cols=159  Identities=18%  Similarity=0.184  Sum_probs=92.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +...++++|.+|+|||||+|+|+.    .+. .....++.+.......+.                              
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~----~~~-~~~~~~~~t~~~~~~~~~------------------------------   50 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG----ENV-YIGNWPGVTVEKKEGEFE------------------------------   50 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT----TCE-EEEECTTSCCEEEEEEEE------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC----CCc-cccCCCCeeccceEEEEE------------------------------
Confidence            456789999999999999999994    332 334445431111100000                              


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHH--HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~--~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                             .++..+.++||||.......  .+.+. ..++. ...++.+++|+|+.++.....       +...+.....+
T Consensus        51 -------~~~~~~~l~Dt~G~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~v~d~~~~~~~~~-------~~~~~~~~~~p  114 (188)
T 2wjg_A           51 -------YNGEKFKVVDLPGVYSLTANSIDEIIA-RDYII-NEKPDLVVNIVDATALERNLY-------LTLQLMEMGAN  114 (188)
T ss_dssp             -------ETTEEEEEEECCCCSCCSSSSHHHHHH-HHHHH-HHCCSEEEEEEEGGGHHHHHH-------HHHHHHTTTCC
T ss_pred             -------eCCcEEEEEECCCcCccccccHHHHHH-HHHHh-ccCCCEEEEEecchhHHHHHH-------HHHHHHhcCCC
Confidence                   12345789999997654211  01111 11111 124788999999987543211       12222233568


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .++|.||+|+.+.........++.+.+   +               ..++.+|+++++|++++.+++...
T Consensus       115 iilv~nK~Dl~~~~~~~~~~~~~~~~~---~---------------~~~~~~Sa~~~~~v~~l~~~i~~~  166 (188)
T 2wjg_A          115 LLLALNKMDLAKSLGIEIDVDKLEKIL---G---------------VKVVPLSAAKKMGIEELKKAISIA  166 (188)
T ss_dssp             EEEEEECHHHHHHTTCCCCHHHHHHHH---T---------------SCEEECBGGGTBSHHHHHHHHHHH
T ss_pred             EEEEEEhhhccccccchHHHHHHHHHh---C---------------CCeEEEEecCCCCHHHHHHHHHHH
Confidence            899999999865432212233333222   1               246789999999999999888654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.51  E-value=1.1e-14  Score=117.49  Aligned_cols=157  Identities=20%  Similarity=0.174  Sum_probs=87.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ...++++|.+|+|||||+|+|+.....     +...++.  +++...           ..+.                  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-----~~~~~~~--t~~~~~-----------~~~~------------------   46 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVY-----IGNWPGV--TVEKKE-----------GEFE------------------   46 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSS-----CC-------CCCCCE-----------EEEE------------------
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCee-----ccCCCCc--ceeeeE-----------EEEE------------------
Confidence            456889999999999999999953110     1111221  111000           0000                  


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHH--HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~--~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                            .++..+.++||||+......  .+.+. ..++ .....+.+++|+|+.+......       +...+.+...+.
T Consensus        47 ------~~~~~l~i~Dt~G~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~v~D~~~~~~~~~-------~~~~~~~~~~p~  111 (165)
T 2wji_A           47 ------YNGEKFKVVDLPGVYSLTANSIDEIIA-RDYI-INEKPDLVVNIVDATALERNLY-------LTLQLMEMGANL  111 (165)
T ss_dssp             ------ETTEEEEEEECCCCSCSSSSSHHHHHH-HHHH-HHHCCSEEEEEEETTCHHHHHH-------HHHHHHHTTCCE
T ss_pred             ------ECCcEEEEEECCCcccCCCcchhHHHH-HHHH-hcCCCCEEEEEecCCchhHhHH-------HHHHHHhcCCCE
Confidence                  12235789999997653211  11110 1111 1125788999999987543211       122223346788


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ++|.||+|+...........++.+.   ++               ..++.+||++|+|++++..++.+
T Consensus       112 ilv~nK~Dl~~~~~~~~~~~~~~~~---~~---------------~~~~~~SA~~~~~v~~l~~~l~~  161 (165)
T 2wji_A          112 LLALNKMDLAKSLGIEIDVDKLEKI---LG---------------VKVVPLSAAKKMGIEELKKAISI  161 (165)
T ss_dssp             EEEEECHHHHHHTTCCCCHHHHHHH---HT---------------SCEEECBGGGTBSHHHHHHHHHH
T ss_pred             EEEEEchHhccccChhhHHHHHHHH---hC---------------CCEEEEEcCCCCCHHHHHHHHHH
Confidence            9999999986432211112222222   21               24678999999999999888754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.51  E-value=9e-15  Score=136.41  Aligned_cols=167  Identities=21%  Similarity=0.302  Sum_probs=96.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ..+-++++|.+|+|||||+|+|+    +...+.+...+|++..    ....         .++                 
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~----~~~~~~~~~~~gtT~d----~~~~---------~~~-----------------  219 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAML----GEERVIVSNVAGTTRD----AVDT---------SFT-----------------  219 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH----TSTTEEEC-------------CCE---------EEE-----------------
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHh----CCCceeecCCCCceee----eeEE---------EEE-----------------
Confidence            45678899999999999999999    4444556666664221    1100         000                 


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                             .++..+.|+||||+.+.....   +.+.....+.....+|++++|+|+.......+..     +...+.....
T Consensus       220 -------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-----~~~~~~~~~~  287 (436)
T 2hjg_A          220 -------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----IAGYAHEAGK  287 (436)
T ss_dssp             -------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTC
T ss_pred             -------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-----HHHHHHHcCC
Confidence                   123357899999975432211   1111111122345688999999998644332211     2223334467


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +.++|+||+|+.+..+.  ..+++.+.++...+.          ....+++.+||++|.|++++..++
T Consensus       288 ~iiiv~NK~Dl~~~~~~--~~~~~~~~~~~~l~~----------~~~~~~~~~SA~tg~~v~~l~~~i  343 (436)
T 2hjg_A          288 AVVIVVNKWDAVDKDES--TMKEFEENIRDHFQF----------LDYAPILFMSALTKKRIHTLMPAI  343 (436)
T ss_dssp             EEEEEEECGGGSCCCTT--HHHHHHHHHHHHCGG----------GTTSCEEECCTTTCTTGGGHHHHH
T ss_pred             cEEEEEECccCCCcchH--HHHHHHHHHHHhccc----------CCCCCEEEEecccCCCHHHHHHHH
Confidence            89999999999875431  334455555443221          122457889999999999886554

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.51  E-value=3.5e-14  Score=118.01  Aligned_cols=159  Identities=16%  Similarity=0.151  Sum_probs=95.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..+..-|+|+|.+|+|||||+|+|+....      .....++ .+....            ..+.+.             
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~------------~~~~~~-------------   58 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEF------VEDYEPT-KADSYR------------KKVVLD-------------   58 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCC------CTTCCTT-CCEEEE------------EEEEET-------------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCC------CCCCCCc-cceEEE------------EEEEEC-------------
Confidence            34566788999999999999999995321      0111111 110000            000000             


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HHH--
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQI--  185 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~qi--  185 (293)
                               .....+.|+||||..........+.        ...+.+++|+|+..........    .+...+ ...  
T Consensus        59 ---------~~~~~~~l~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~  117 (206)
T 2bov_A           59 ---------GEEVQIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFAATA----DFREQILRVKED  117 (206)
T ss_dssp             ---------TEEEEEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTTC
T ss_pred             ---------CEEEEEEEEcCCChhhhHHHHHHHH--------hhCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCC
Confidence                     1124578999999877655543322        3578899999998754322110    011111 111  


Q ss_pred             -hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 -~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                       ..+.++|+||+|+.+..+  ....++....+..+               ..++.+|+++|.|++++..++.+
T Consensus       118 ~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~  173 (206)
T 2bov_A          118 ENVPFLLVGNKSDLEDKRQ--VSVEEAKNRAEQWN---------------VNYVETSAKTRANVDKVFFDLMR  173 (206)
T ss_dssp             SCCCEEEEEECTTCGGGCC--SCHHHHHHHHHHHT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred             CCCCEEEEEeccCcccccc--ccHHHHHHHHHHhC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence             457899999999976543  23455555555442               13678999999999999888754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.50  E-value=6e-15  Score=138.17  Aligned_cols=155  Identities=19%  Similarity=0.248  Sum_probs=86.5

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+|+|.+|+|||||+|+|+.    ...+++...+|+    +.+....         .+.                     
T Consensus       227 V~ivG~~nvGKSSLln~L~~----~~~a~v~~~~gt----T~d~~~~---------~i~---------------------  268 (462)
T 3geh_A          227 VAIVGRPNVGKSSLLNAWSQ----SDRAIVTDLPGT----TRDVVES---------QLV---------------------  268 (462)
T ss_dssp             EEEEECTTSSHHHHHHHHHH----HHBSCCSCCTTC----CHHHHHH---------EEE---------------------
T ss_pred             EEEEcCCCCCHHHHHHHHhC----CCcccccCCCCe----eEEEEEE---------EEE---------------------
Confidence            78899999999999999994    333444444554    2221111         000                     


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCEEEE
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVIL  193 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~iivl  193 (293)
                         .++..+.|+||||+.++....+.+...........+|.+++|+|++.......        ..++.++ ..+.++|+
T Consensus       269 ---~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~--------~~i~~~l~~~piivV~  337 (462)
T 3geh_A          269 ---VGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--------QEIYEQVKHRPLILVM  337 (462)
T ss_dssp             ---ETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH--------HHHHHHHTTSCEEEEE
T ss_pred             ---ECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH--------HHHHHhccCCcEEEEE
Confidence               13456889999998776555554444445556677899999999986433222        1222222 25889999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      ||+|+.+....    .    .++.+.             ....++.+|+++|+|++++.+++.+..
T Consensus       338 NK~Dl~~~~~~----~----~~~~~~-------------~~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          338 NKIDLVEKQLI----T----SLEYPE-------------NITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             ECTTSSCGGGS----T----TCCCCT-------------TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ECCCCCcchhh----H----HHHHhc-------------cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999875421    0    000000             123578899999999999999887643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.50  E-value=8.6e-14  Score=112.91  Aligned_cols=155  Identities=17%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-|+++|.+|+|||||+|+|+..    +.. ....++  .+.+....           .+.+.               
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~----~~~-~~~~~~--~~~~~~~~-----------~~~~~---------------   54 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADN----TFS-GSYITT--IGVDFKIR-----------TVEIN---------------   54 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSC----C----CCTTT--BSEEEEEE-----------EEEET---------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC----CCC-CccCCC--ceeEEEEE-----------EEEEC---------------
Confidence            4567889999999999999999842    221 111221  11111000           00000               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----  185 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----  185 (293)
                             .....+.|+||||........        ......+|.+++|+|+.........       ..++.++     
T Consensus        55 -------~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~-------~~~~~~~~~~~~  112 (181)
T 3tw8_B           55 -------GEKVKLQIWDTAGQERFRTIT--------STYYRGTHGVIVVYDVTSAESFVNV-------KRWLHEINQNCD  112 (181)
T ss_dssp             -------TEEEEEEEEEETTGGGCSSCC--------GGGGTTCSEEEEEEETTCHHHHHHH-------HHHHHHHHHHCT
T ss_pred             -------CEEEEEEEEcCCCchhhhhhH--------HHHhccCCEEEEEEECCCHHHHHHH-------HHHHHHHHHhCC
Confidence                   012457899999944322111        1223567899999999875433221       1222222     


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ..+.++|+||+|+.+....  .........+..+               ..++.+|+++|.|++++..++.+
T Consensus       113 ~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  167 (181)
T 3tw8_B          113 DVCRILVGNKNDDPERKVV--ETEDAYKFAGQMG---------------IQLFETSAKENVNVEEMFNCITE  167 (181)
T ss_dssp             TSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT---------------CCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchhccc--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence            2466999999998765432  2334444444332               24678999999999999888754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.50  E-value=9.4e-14  Score=114.19  Aligned_cols=158  Identities=12%  Similarity=0.143  Sum_probs=92.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ...-|+|+|.+|+|||||+|+|+......   .....    .+.+.....           +..                
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t----~~~~~~~~~-----------~~~----------------   66 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP---AFVST----VGIDFKVKT-----------VYR----------------   66 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCC---SCCCC----CCCEEEEEE-----------EEE----------------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCC---CcCCc----eeEEEEEEE-----------EEE----------------
Confidence            45568889999999999999999642100   00001    111110000           000                


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~  187 (293)
                            ......+.|+||||.........        .....+|.+++|+|+......... .   .+...+.+.   ..
T Consensus        67 ------~~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~  128 (189)
T 2gf9_A           67 ------HDKRIKLQIWDTAGQERYRTITT--------AYYRGAMGFLLMYDIANQESFAAV-Q---DWATQIKTYSWDNA  128 (189)
T ss_dssp             ------TTEEEEEEEEECCSCCSSCCSGG--------GGGTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTC
T ss_pred             ------CCeEEEEEEEeCCCcHHHhhhHH--------HhccCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCC
Confidence                  01234578999999654322221        222467899999999765432211 0   011222222   45


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.++|+||+|+.+..+.  ..+.+.+..+.++               ..++.+|+++|.|++++..++.+
T Consensus       129 piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~  181 (189)
T 2gf9_A          129 QVILVGNKCDLEDERVV--PAEDGRRLADDLG---------------FEFFEASAKENINVKQVFERLVD  181 (189)
T ss_dssp             EEEEEEECTTCGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CEEEEEECcccccccCC--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence            78999999999764432  2344444444432               14678999999999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.50  E-value=1.2e-13  Score=112.09  Aligned_cols=109  Identities=15%  Similarity=0.097  Sum_probs=64.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.++||||.........        .....+|.+++|+|+..........    .+...+.+   ...+.++|+||+|
T Consensus        60 ~~~~~~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~nK~D  127 (180)
T 2g6b_A           60 VKLQMWDTAGQERFRSVTH--------AYYRDAHALLLLYDVTNKASFDNIQ----AWLTEIHEYAQHDVALMLLGNKVD  127 (180)
T ss_dssp             EEEEEEECCCC----------------CCGGGCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECCS
T ss_pred             EEEEEEeCCCcHHHHHHHH--------HHccCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCcEEEEEECcc
Confidence            4578999999655433221        2235678999999998754322110    01112222   2356799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+..+.  ......+..+..+               ..++.+||+++.|++++..++.+.
T Consensus       128 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~  171 (180)
T 2g6b_A          128 SAHERVV--KREDGEKLAKEYG---------------LPFMETSAKTGLNVDLAFTAIAKE  171 (180)
T ss_dssp             TTSCCCS--CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCccccc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9865432  2344444444332               146789999999999999888653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.50  E-value=3.3e-14  Score=132.75  Aligned_cols=168  Identities=23%  Similarity=0.239  Sum_probs=96.6

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ..+-++|+|++|+|||||+|+|+    +...+++.+.+|++.......+             .                 
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~----g~~~~~v~~~~gtT~d~~~~~i-------------~-----------------  224 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAIL----NKERALVSPIPGTTRDPVDDEV-------------F-----------------  224 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH----TSTTEEECCCC------CCEEE-------------E-----------------
T ss_pred             cCceEEEECCCCCCHHHHHHHHh----CCcccccCCCCCCcCCceEEEE-------------E-----------------
Confidence            45678899999999999999999    5555667777775221111000             0                 


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHH----HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLA----SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~----~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                             .++.++.++||+|+.......    +.+............+.+++++|+.......+.     .....+....
T Consensus       225 -------~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-----~i~~~l~~~~  292 (439)
T 1mky_A          225 -------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-----RMAGLMERRG  292 (439)
T ss_dssp             -------ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-----HHHHHHHHTT
T ss_pred             -------ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-----HHHHHHHHcC
Confidence                   122357899999985433222    111111112233467889999998754322211     0233444556


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+.++|+||+|+.+..+  ...+++.+.++.....          ....+++.+||++|.|++++.+.+.
T Consensus       293 ~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~SA~~g~gv~~l~~~i~  350 (439)
T 1mky_A          293 RASVVVFNKWDLVVHRE--KRYDEFTKLFREKLYF----------IDYSPLIFTSADKGWNIDRMIDAMN  350 (439)
T ss_dssp             CEEEEEEECGGGSTTGG--GCHHHHHHHHHHHCGG----------GTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCEEEEEECccCCCchh--hHHHHHHHHHHHHhcc----------CCCCcEEEEECCCCCCHHHHHHHHH
Confidence            78999999999986432  1244454444332211          1224578899999999998876654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=113.96  Aligned_cols=109  Identities=17%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||..........+        ...+|.+++|+|+.+........    .+...+.+.   ..+.++|+||+|
T Consensus        75 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~iilV~D~~~~~s~~~~~----~~~~~i~~~~~~~~piilV~NK~D  142 (192)
T 2il1_A           75 IRLQIWDTAGQERFNSITSAY--------YRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAELLLVGNKLD  142 (192)
T ss_dssp             EEEEEEEECCSGGGHHHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred             EEEEEEeCCCcHHHHHHHHHH--------hcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence            457899999976544443222        24678999999998755432210    012222222   356799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ..+......+.+.              ...++.+||++|+|++++..++.+
T Consensus       143 l~~~~~v--~~~~~~~~~~~~~--------------~~~~~~~SA~~g~gi~~l~~~l~~  186 (192)
T 2il1_A          143 CETDREI--TRQQGEKFAQQIT--------------GMRFCEASAKDNFNVDEIFLKLVD  186 (192)
T ss_dssp             GGGGCCS--CHHHHHHHHHTST--------------TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccccc--CHHHHHHHHHhcC--------------CCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9765432  2334444443321              134678999999999999888754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.49  E-value=3.8e-14  Score=113.38  Aligned_cols=108  Identities=15%  Similarity=0.152  Sum_probs=67.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHHHH---hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQI---AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~qi---~~a~iivlNK~  196 (293)
                      .++.|+||||..+.......+.        ...+.+++|+|+..........    .+.. .....   ..+.++|+||+
T Consensus        52 ~~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~  119 (168)
T 1u8z_A           52 VQIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFAATA----DFREQILRVKEDENVPFLLVGNKS  119 (168)
T ss_dssp             EEEEEEECCC---CHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCCTTSCEEEEEECG
T ss_pred             EEEEEEECCCcchhHHHHHHHh--------hcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECc
Confidence            4678999999776655443322        4578899999998654322110    0111 11211   45789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+..+.  ..+++....+..+               ..++.+|+++|.|++++..++.+
T Consensus       120 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  163 (168)
T 1u8z_A          120 DLEDKRQV--SVEEAKNRADQWN---------------VNYVETSAKTRANVDKVFFDLMR  163 (168)
T ss_dssp             GGGGGCCS--CHHHHHHHHHHHT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccCcc--CHHHHHHHHHHcC---------------CeEEEeCCCCCCCHHHHHHHHHH
Confidence            99765432  3455555555432               14678999999999999988854

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.49  E-value=2.4e-13  Score=111.52  Aligned_cols=160  Identities=12%  Similarity=0.076  Sum_probs=91.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-++++|.+|+|||||+|+|+..    +..-.....|    .+...+.                             
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~----~~~~~~~t~~----~~~~~~~-----------------------------   56 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN----EVVHTSPTIG----SNVEEIV-----------------------------   56 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT----SCEEEECCSC----SSCEEEE-----------------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC----CCCcCcCCCc----cceEEEE-----------------------------
Confidence            44566888999999999999999953    2111222111    1111000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hh
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IA  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~  186 (293)
                              .++..+.|+||||..........        ....+|.+++|+|+.+.........   .+......   -.
T Consensus        57 --------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~  117 (187)
T 1zj6_A           57 --------INNTRFLMWDIGGQESLRSSWNT--------YYTNTEFVIVVVDSTDRERISVTRE---ELYKMLAHEDLRK  117 (187)
T ss_dssp             --------ETTEEEEEEECCC----CGGGHH--------HHTTCCEEEEEEETTCTTTHHHHHH---HHHHHHTSGGGTT
T ss_pred             --------ECCEEEEEEECCCCHhHHHHHHH--------HhcCCCEEEEEEeCCCHHHHHHHHH---HHHHHHhchhhCC
Confidence                    12345789999997653333221        1246889999999986422111000   01112221   24


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      .+.++|+||+|+.+..    ...++.+.++...-.         ... ..++.+||++|+|++++.+++.+..
T Consensus       118 ~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~---------~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (187)
T 1zj6_A          118 AGLLIFANKQDVKECM----TVAEISQFLKLTSIK---------DHQ-WHIQACCALTGEGLCQGLEWMMSRL  176 (187)
T ss_dssp             CEEEEEEECTTSTTCC----CHHHHHHHHTGGGCC---------SSC-EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCcCCC----CHHHHHHHhChhhhc---------CCC-cEEEEccCCCCcCHHHHHHHHHHHH
Confidence            5789999999998643    234555554321000         001 2578899999999999999986543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.49  E-value=2.9e-14  Score=113.95  Aligned_cols=109  Identities=20%  Similarity=0.093  Sum_probs=67.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.++||||..........+.        ...+.+++|+|............ .  .......   -..+.++|+||+|
T Consensus        51 ~~~~l~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~-~--~~~i~~~~~~~~~piilv~nK~D  119 (167)
T 1kao_A           51 SVLEILDTAGTEQFASMRDLYI--------KNGQGFILVYSLVNQQSFQDIKP-M--RDQIIRVKRYEKVPVILVGNKVD  119 (167)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHHH-H--HHHHHHHTTTSCCCEEEEEECGG
T ss_pred             EEEEEEECCCchhhHHHHHHHh--------ccCCEEEEEEeCCCHHHHHHHHH-H--HHHHHHhcCCCCCCEEEEEECCc
Confidence            3478999999876655443322        45688999999987543211100 0  1111221   2467899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  .........+..+               ..++.+|+++|+|++++.+++.+
T Consensus       120 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  162 (167)
T 1kao_A          120 LESEREV--SSSEGRALAEEWG---------------CPFMETSAKSKTMVDELFAEIVR  162 (167)
T ss_dssp             GGGGCCS--CHHHHHHHHHHHT---------------SCEEEECTTCHHHHHHHHHHHHH
T ss_pred             ccccccC--CHHHHHHHHHHhC---------------CCEEEecCCCCcCHHHHHHHHHH
Confidence            8764432  2334444444332               24678999999999999988754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.49  E-value=9.5e-14  Score=117.97  Aligned_cols=165  Identities=12%  Similarity=0.057  Sum_probs=89.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+.+-|+|+|.+|+|||||+|+|+    +.+.. ....++.+..+......                             
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~----~~~~~-~~~~~~~t~~~~~~~~~-----------------------------   72 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVS----RANVD-VQSYSFTTKNLYVGHFD-----------------------------   72 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHT----TTCEE-EECC-----CEEEEEEE-----------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh----CCCCc-cCCCCCcceeeeeeeee-----------------------------
Confidence            356778999999999999999999    44443 23333321111000000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHH----hhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLAS----VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~----~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                              ..+..+.|+||||+.+......    ......   -....|++++|+|++........     ....++.++
T Consensus        73 --------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~-----~~~~~~~~l  136 (228)
T 2qu8_A           73 --------HKLNKYQIIDTPGLLDRAFENRNTIEMTTITA---LAHINGVILFIIDISEQCGLTIK-----EQINLFYSI  136 (228)
T ss_dssp             --------ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH---HHTSSEEEEEEEETTCTTSSCHH-----HHHHHHHHH
T ss_pred             --------cCCCeEEEEECCCCcCcccchhhhHHHHHHHH---hhccccEEEEEEecccccCcchH-----HHHHHHHHH
Confidence                    1234578999999854210000    000011   12345789999999764211000     011222222


Q ss_pred             -----hccCEEEEeCCCCCCCCCCcchHH-HHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 -----AFADVVILNKVDLVSPERSGDSLD-ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 -----~~a~iivlNK~D~~~~~~~~~~~~-~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                           ..+.++|+||+|+.+..+...... .+....+..++             ...++.+||++|+|++++..++.+
T Consensus       137 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~SA~~g~gi~~l~~~l~~  201 (228)
T 2qu8_A          137 KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN-------------PIKFSSFSTLTGVGVEQAKITACE  201 (228)
T ss_dssp             HTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS-------------CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC-------------CceEEEEecccCCCHHHHHHHHHH
Confidence                 467899999999987544311111 22222222211             135688999999999999888754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.49  E-value=1.1e-13  Score=113.90  Aligned_cols=159  Identities=14%  Similarity=0.136  Sum_probs=92.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-|+++|.+|+|||||+|+|+...    ...  .....+.+.....+             .                
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~----~~~--~~~~~t~~~~~~~~-------------~----------------   63 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN----AQS--QNILPTIGFSIEKF-------------K----------------   63 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG----GCC--SSCCCCSSEEEEEE-------------E----------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC----CCC--CCcCCccceeEEEE-------------E----------------
Confidence            345568899999999999999998532    000  00111111111000             0                


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-----
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-----  184 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-----  184 (293)
                              .++..+.|+||||..........        ....+|.+++|+|+...........   .+......     
T Consensus        64 --------~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~  124 (190)
T 2h57_A           64 --------SSSLSFTVFDMSGQGRYRNLWEH--------YYKEGQAIIFVIDSSDRLRMVVAKE---ELDTLLNHPDIKH  124 (190)
T ss_dssp             --------CSSCEEEEEEECCSTTTGGGGGG--------GGGGCSEEEEEEETTCHHHHHHHHH---HHHHHHHSTTTTT
T ss_pred             --------ECCEEEEEEECCCCHHHHHHHHH--------HHhcCCEEEEEEECCCHHHHHHHHH---HHHHHHhChhhcc
Confidence                    12356889999997654433321        2256789999999987532211100   01112221     


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHH--hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIH--EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~--~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      -..+.++|+||+|+.+..    ..+++.+.++  .+...            ...++.+||++|.|++++.+++.+.
T Consensus       125 ~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~gi~~l~~~l~~~  184 (190)
T 2h57_A          125 RRIPILFFANKMDLRDAV----TSVKVSQLLCLENIKDK------------PWHICASDAIKGEGLQEGVDWLQDQ  184 (190)
T ss_dssp             SCCCEEEEEECTTSTTCC----CHHHHHHHHTGGGCCSS------------CEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCcCcccCC----CHHHHHHHhChhhccCC------------ceEEEEccCCCCcCHHHHHHHHHHH
Confidence            245789999999998653    2355555553  11110            1257889999999999999988653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.49  E-value=2.6e-14  Score=124.00  Aligned_cols=170  Identities=16%  Similarity=0.100  Sum_probs=92.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-|+|+|.+|||||||+|+|+.    .+..+....++.   ++......                 . |        
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~----~~~~~~~~~~~~---~t~~~~~~-----------------~-~--------   66 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILR----KQAFESKLGSQT---LTKTCSKS-----------------Q-G--------   66 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHT----SCCSCCCTTSCC---CCCSCEEE-----------------E-E--------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhC----CCCcccCCCCCc---eeeeeEEE-----------------E-E--------
Confidence            3456788999999999999999994    332222222220   11100000                 0 0        


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHH----HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~----~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                             ...+.++.||||||+.+...    +.+.+ ..........+|++++|+|+..+......      +...+.++
T Consensus        67 -------~~~~~~i~iiDTpG~~~~~~~~~~~~~~i-~~~~~~~~~~~d~il~V~d~~~~~~~~~~------~~~~l~~~  132 (260)
T 2xtp_A           67 -------SWGNREIVIIDTPDMFSWKDHCEALYKEV-QRCYLLSAPGPHVLLLVTQLGRYTSQDQQ------AAQRVKEI  132 (260)
T ss_dssp             -------EETTEEEEEEECCGGGGSSCCCHHHHHHH-HHHHHHHTTCCSEEEEEEETTCCCHHHHH------HHHHHHHH
T ss_pred             -------EeCCCEEEEEECcCCCCCCCCHHHHHHHH-HHHHHhcCCCCcEEEEEEeCCCCCHHHHH------HHHHHHHH
Confidence                   01335689999999765421    11111 11112233568999999999863222111      12233333


Q ss_pred             -----hccCEEEEe-CCCCCCCCCCcchH-----HHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhh
Q 022736          186 -----AFADVVILN-KVDLVSPERSGDSL-----DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGL  254 (293)
Q Consensus       186 -----~~a~iivlN-K~D~~~~~~~~~~~-----~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~  254 (293)
                           ..+.++++| |+|+.+.. ....+     ..+...++.+.....         .+.. +++||+++.|++++..+
T Consensus       133 ~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~SA~~~~gv~~l~~~  201 (260)
T 2xtp_A          133 FGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRIC---------AFNN-RAEGSNQDDQVKELMDC  201 (260)
T ss_dssp             HCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEE---------ECCT-TCCHHHHHHHHHHHHHH
T ss_pred             hCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEE---------EecC-cccccccHHHHHHHHHH
Confidence                 457888888 99998532 10000     123334554432110         0122 78999999999999888


Q ss_pred             hhh
Q 022736          255 LEE  257 (293)
Q Consensus       255 l~~  257 (293)
                      +.+
T Consensus       202 i~~  204 (260)
T 2xtp_A          202 IED  204 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.49  E-value=1.3e-13  Score=114.52  Aligned_cols=108  Identities=15%  Similarity=0.097  Sum_probs=67.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.|+||||..........        ....+|.+++|+|+......... .   .+...+..   -..+.++|+||+|
T Consensus        57 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~D  124 (203)
T 1zbd_A           57 IKLQIWDTAGLERYRTITTA--------YYRGAMGFILMYDITNEESFNAV-Q---DWSTQIKTYSWDNAQVLLVGNKCD  124 (203)
T ss_dssp             EEEEEEEECCSGGGHHHHHT--------TGGGCSEEEEEEETTCHHHHHHH-H---HHHHHHHHHSCSSCEEEEEEECTT
T ss_pred             EEEEEEECCCchhhcchHHH--------hhcCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECcc
Confidence            45789999998655443322        22467899999999865432111 0   01112222   1356899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+....  ..+.+....+.++               ..++.+||++|.|++++..++.+
T Consensus       125 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  167 (203)
T 1zbd_A          125 MEDERVV--SSERGRQLADHLG---------------FEFFEASAKDNINVKQTFERLVD  167 (203)
T ss_dssp             CTTSCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSSHHHHHHHHH
T ss_pred             cCccccc--CHHHHHHHHHHCC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence            9765432  3344444444432               14678999999999988887753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.49  E-value=4.6e-14  Score=115.16  Aligned_cols=109  Identities=14%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||..+.......+.        ...|.+++|+|+.......... ..  +.......   ..+.++|+||+|
T Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~-~~--~~~i~~~~~~~~~piilv~nK~D  134 (187)
T 2a9k_A           66 VQIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFAATA-DF--REQILRVKEDENVPFLLVGNKSD  134 (187)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHHCCTTCCEEEEEECGG
T ss_pred             EEEEEEECCCCcccHHHHHHHh--------ccCCEEEEEEECcCHHHHHHHH-HH--HHHHHHhcCCCCCCEEEEEECcc
Confidence            4578999999877655543322        4578899999998654322110 00  11111221   457899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+  ....++.+..+..+               ..++.+|+++++|++++..++.+
T Consensus       135 l~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  177 (187)
T 2a9k_A          135 LEDKRQ--VSVEEAKNRAEQWN---------------VNYVETSAKTRANVDKVFFDLMR  177 (187)
T ss_dssp             GGGGCC--SCHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccCc--cCHHHHHHHHHHcC---------------CeEEEeCCCCCCCHHHHHHHHHH
Confidence            976433  23455555555432               24678999999999999988854

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.49  E-value=9.7e-15  Score=131.75  Aligned_cols=160  Identities=18%  Similarity=0.196  Sum_probs=93.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ++-|+|+|++|||||||+|+|+..    +.. +.+.+.++.......+             .+                 
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~----~~~-i~~~~ftTl~p~~g~v-------------~~-----------------  202 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSA----KPK-IADYHFTTLVPNLGMV-------------ET-----------------  202 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEE----CCE-ESSTTSSCCCCCEEEE-------------EC-----------------
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcC----CCc-cccCCccccCceEEEE-------------Ee-----------------
Confidence            456899999999999999999853    222 2344433221111111             00                 


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch-----HHHHhhhcccCCchHHHHH--
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-----LFQIDKYRHLSSYPEAIHQ--  184 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~-----~~~~~~~~~~~~~~~~~~q--  184 (293)
                            .+...++|+||||+.+.......+ ...++....+++.+++|+|++..     ......      +...+.+  
T Consensus       203 ------~~~~~~~l~DtPG~i~~a~~~~~l-~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~------~~~eL~~~~  269 (342)
T 1lnz_A          203 ------DDGRSFVMADLPGLIEGAHQGVGL-GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLT------INQELSEYN  269 (342)
T ss_dssp             ------SSSCEEEEEEHHHHHHHTTCTTTT-HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHH------HHHHHHHSC
T ss_pred             ------CCCceEEEecCCCCcccccccchh-HHHHHHHHHhccEEEEEEECCcccccChHHHHHH------HHHHHHHhh
Confidence                  112468999999964321111111 12234455678999999999652     222111      1112221  


Q ss_pred             ---HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          185 ---IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       185 ---i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                         ...|.++|+||+|+.+..      +.+....+.++..             ..++.+||++++|+++|..++.+.
T Consensus       270 ~~l~~~p~ilV~NK~Dl~~~~------e~~~~l~~~l~~~-------------~~v~~iSA~tg~gi~eL~~~l~~~  327 (342)
T 1lnz_A          270 LRLTERPQIIVANKMDMPEAA------ENLEAFKEKLTDD-------------YPVFPISAVTREGLRELLFEVANQ  327 (342)
T ss_dssp             SSTTTSCBCBEEECTTSTTHH------HHHHHHHHHCCSC-------------CCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred             hhhcCCCEEEEEECccCCCCH------HHHHHHHHHhhcC-------------CCEEEEECCCCcCHHHHHHHHHHH
Confidence               356789999999998642      2233333333211             357899999999999999888653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.49  E-value=3.5e-13  Score=109.11  Aligned_cols=109  Identities=15%  Similarity=0.082  Sum_probs=67.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-------HhccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------i~~a~iivl  193 (293)
                      ..+.|+||||..........+        ....+.+++|+|...........    .+...+..       ...+.++|+
T Consensus        56 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~p~i~v~  123 (177)
T 1wms_A           56 VTMQIWDTAGQERFRSLRTPF--------YRGSDCCLLTFSVDDSQSFQNLS----NWKKEFIYYADVKEPESFPFVILG  123 (177)
T ss_dssp             EEEEEEECCCCGGGHHHHGGG--------GTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred             EEEEEEeCCCchhhhhhHHHH--------HhcCCEEEEEEECcCHHHHHHHH----HHHHHHHHHccccccCCCcEEEEE
Confidence            457899999976554443222        24578899999998764322110    01111111       234789999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ||+|+.+.+   ...+.+.+..+...              ...++.+|+++|.|++++..++.+.
T Consensus       124 nK~Dl~~~~---~~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~~~  171 (177)
T 1wms_A          124 NKIDISERQ---VSTEEAQAWCRDNG--------------DYPYFETSAKDATNVAAAFEEAVRR  171 (177)
T ss_dssp             ECTTCSSCS---SCHHHHHHHHHHTT--------------CCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ECCcccccc---cCHHHHHHHHHhcC--------------CceEEEEeCCCCCCHHHHHHHHHHH
Confidence            999997433   23445555444221              1347889999999999998887543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.48  E-value=4.6e-15  Score=139.58  Aligned_cols=157  Identities=23%  Similarity=0.304  Sum_probs=97.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .-|+|+|.+|+|||||+|+|+.    .+.+++...+|++.......             +.                   
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~----~~~a~vs~~~gTT~d~~~~~-------------i~-------------------  287 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLN----EDRAIVTDIPGTTRDVISEE-------------IV-------------------  287 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHH----HTBCCCCCSSCCSSCSCCEE-------------EE-------------------
T ss_pred             CEEEEECcCCCcHHHHHHHHHC----CCCCccCCCCCeeeeeEEEE-------------Ee-------------------
Confidence            4588999999999999999994    33455666666532211111             11                   


Q ss_pred             HHHhhcCCCCEEEEecCCCC-CcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCE
Q 022736          113 QLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADV  190 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~-~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~i  190 (293)
                           .++..+.|+||||+. ++....+.+.....+.....+|.+++|+|++......+.        +.+..+ ..+.+
T Consensus       288 -----~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~--------~il~~l~~~pii  354 (482)
T 1xzp_A          288 -----IRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR--------KILERIKNKRYL  354 (482)
T ss_dssp             -----ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH--------HHHHHHTTSSEE
T ss_pred             -----cCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH--------HHHHHhcCCCEE
Confidence                 123458899999987 554332222112223444678999999998754322111        111222 46789


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +|+||+|+.+..    ..+++.+...   .             ..+++.+||++|+|++++..++.+.
T Consensus       355 vV~NK~DL~~~~----~~~~~~~~~~---~-------------~~~~i~iSAktg~Gi~eL~~~l~~~  402 (482)
T 1xzp_A          355 VVINKVDVVEKI----NEEEIKNKLG---T-------------DRHMVKISALKGEGLEKLEESIYRE  402 (482)
T ss_dssp             EEEEECSSCCCC----CHHHHHHHHT---C-------------STTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             EEEECccccccc----CHHHHHHHhc---C-------------CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            999999997542    2233333211   0             0246889999999999999888653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.48  E-value=4.7e-14  Score=114.93  Aligned_cols=158  Identities=14%  Similarity=0.107  Sum_probs=90.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +.+-|+++|.+|+|||||+|+|+....      ......+ .+.+...            .+...               
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~~------------~~~~~---------------   50 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQF------VDSYDPT-IENTFTK------------LITVN---------------   50 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC------CSCCCTT-CCEEEEE------------EEEET---------------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCC------CCCCCCC-ccccEEE------------EEEEC---------------
Confidence            456788999999999999999995321      0111111 1111000            00000               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~  187 (293)
                             .....+.|+||||.........        .....+|.+++|+|............ .  +.....   ....
T Consensus        51 -------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~  112 (181)
T 3t5g_A           51 -------GQEYHLQLVDTAGQDEYSIFPQ--------TYSIDINGYILVYSVTSIKSFEVIKV-I--HGKLLDMVGKVQI  112 (181)
T ss_dssp             -------TEEEEEEEEECCCCCTTCCCCG--------GGTTTCSEEEEEEETTCHHHHHHHHH-H--HHHHHHHC----C
T ss_pred             -------CEEEEEEEEeCCCchhhhHHHH--------HHHhcCCEEEEEEECCCHHHHHHHHH-H--HHHHHHhcCCCCC
Confidence                   1124568999999765322211        12245789999999987543221100 0  111111   1246


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.++|+||+|+.+..+  ...+......+..+               ..++.+||++|.|++++..++.+
T Consensus       113 p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~  165 (181)
T 3t5g_A          113 PIMLVGNKKDLHMERV--ISYEEGKALAESWN---------------AAFLESSAKENQTAVDVFRRIIL  165 (181)
T ss_dssp             CEEEEEECTTCTTTCC--SCHHHHHHHHHHTT---------------CEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEEECccchhcce--ecHHHHHHHHHHhC---------------CcEEEEecCCCCCHHHHHHHHHH
Confidence            7899999999976543  23455555555442               24678999999999999888754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.48  E-value=3.9e-13  Score=110.71  Aligned_cols=158  Identities=18%  Similarity=0.145  Sum_probs=91.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ...-|+|+|.+|+|||||+|+|+......     ...++  .+.+....           .+.+.               
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~--~~~~~~~~-----------~~~~~---------------   61 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-----SYIST--IGVDFKIR-----------TIELD---------------   61 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCS-----CCCCC--SSEEEEEE-----------EEEET---------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCC-----CCCCc--ccceEEEE-----------EEEEC---------------
Confidence            45568899999999999999999642110     11111  11111000           00000               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~  187 (293)
                             .....+.|+||||..........        ....+|.+++|+|+.+........    .+...+.+.   ..
T Consensus        62 -------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~  122 (196)
T 3tkl_A           62 -------GKTIKLQIWDTAGQERFRTITSS--------YYRGAHGIIVVYDVTDQESFNNVK----QWLQEIDRYASENV  122 (196)
T ss_dssp             -------TEEEEEEEEEECCSGGGCTTHHH--------HHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTC
T ss_pred             -------CEEEEEEEEECCCcHhhhhhHHH--------HHhhCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCC
Confidence                   11245789999996543322221        124578999999998754322110    011222222   45


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.++|+||+|+.+....  .........+.++               ..++.+||++|.|++++..++.+
T Consensus       123 p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gv~~l~~~l~~  175 (196)
T 3tkl_A          123 NKLLVGNKCDLTTKKVV--DYTTAKEFADSLG---------------IPFLETSAKNATNVEQSFMTMAA  175 (196)
T ss_dssp             EEEEEEECTTCTTTCCS--CHHHHHHHHHHTT---------------CCEEEECTTTCTTHHHHHHHHHH
T ss_pred             CEEEEEECccccccccc--CHHHHHHHHHHcC---------------CcEEEEeCCCCCCHHHHHHHHHH
Confidence            78999999999876542  3334444444332               24678999999999998888754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.48  E-value=4.1e-13  Score=107.84  Aligned_cols=108  Identities=15%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.|+||||..+.......        ....+|.+++|+|+..........    .+...+.+   -..+.++|+||+|
T Consensus        55 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D  122 (170)
T 1z08_A           55 VNLAIWDTAGQERFHALGPI--------YYRDSNGAILVYDITDEDSFQKVK----NWVKELRKMLGNEICLCIVGNKID  122 (170)
T ss_dssp             EEEEEEECCCC-------CC--------SSTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHGGGSEEEEEEECGG
T ss_pred             EEEEEEECCCcHhhhhhHHH--------HhccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCeEEEEEECcc
Confidence            35789999996544332211        224678999999998754322110    01112222   2356799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ..+...+..+..+               ..++.+||++|.|++++..++.+
T Consensus       123 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  165 (170)
T 1z08_A          123 LEKERHV--SIQEAESYAESVG---------------AKHYHTSAKQNKGIEELFLDLCK  165 (170)
T ss_dssp             GGGGCCS--CHHHHHHHHHHTT---------------CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             ccccccc--CHHHHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence            9765432  3445555554432               23578999999999999988754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.48  E-value=1.8e-13  Score=109.59  Aligned_cols=105  Identities=12%  Similarity=0.124  Sum_probs=66.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      .++.|+||||..+......        .....+|.+++|+|+........       ...++.++     ..+.++|+||
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~piilv~nK  118 (168)
T 1z2a_A           54 VRLMLWDTAGQEEFDAITK--------AYYRGAQACVLVFSTTDRESFEA-------ISSWREKVVAEVGDIPTALVQNK  118 (168)
T ss_dssp             EEEEEECCTTGGGTTCCCH--------HHHTTCCEEEEEEETTCHHHHHT-------HHHHHHHHHHHHCSCCEEEEEEC
T ss_pred             EEEEEEcCCCcHhHHHHHH--------HHhcCCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhCCCCCEEEEEEC
Confidence            4678999999543222111        11246789999999987543221       11222222     4678999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.+..+.  ..+.+.+..+..+               ..++.+|++++.|++++..++.+
T Consensus       119 ~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~  163 (168)
T 1z2a_A          119 IDLLDDSCI--KNEEAEGLAKRLK---------------LRFYRTSVKEDLNVSEVFKYLAE  163 (168)
T ss_dssp             GGGGGGCSS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSSHHHHHHHHH
T ss_pred             cccCccccc--CHHHHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHH
Confidence            999764331  2344555444432               24678999999999999988754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.48  E-value=1e-13  Score=110.94  Aligned_cols=109  Identities=14%  Similarity=0.046  Sum_probs=68.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~  196 (293)
                      ..+.++||||..........+.        ...+.+++|+|..+........    .+...+.+.    ..+.++|+||+
T Consensus        51 ~~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~  118 (167)
T 1c1y_A           51 CMLEILDTAGTEQFTAMRDLYM--------KNGQGFALVYSITAQSTFNDLQ----DLREQILRVKDTEDVPMILVGNKC  118 (167)
T ss_dssp             EEEEEEEECSSCSSTTHHHHHH--------HHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSCCCEEEEEECT
T ss_pred             EEEEEEECCChHHHHHHHHHHh--------ccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCcCCCcEEEEEECc
Confidence            4578999999766544443222        3578899999998654322110    011112221    45779999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+..+.  ..+.+....+.+. .             ..++.+||++|.|++++..++.+
T Consensus       119 Dl~~~~~~--~~~~~~~~~~~~~-~-------------~~~~~~Sa~~~~gi~~l~~~l~~  163 (167)
T 1c1y_A          119 DLEDERVV--GKEQGQNLARQWC-N-------------CAFLESSAKSKINVNEIFYDLVR  163 (167)
T ss_dssp             TCGGGCCS--CHHHHHHHHHHTT-S-------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccC--CHHHHHHHHHHcc-C-------------CcEEEecCCCCCCHHHHHHHHHH
Confidence            99765432  3344554444331 1             34688999999999999988854

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.48  E-value=2.5e-13  Score=125.33  Aligned_cols=112  Identities=20%  Similarity=0.183  Sum_probs=69.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D  197 (293)
                      ..+.|+||||..+.....        ......+|.+++|+|+....  .+...      +...+.++.. +.++++||+|
T Consensus        75 ~~~~iiDtPGh~~~~~~~--------~~~~~~~D~~ilVvda~~~~~~~qt~~------~~~~~~~~~~~~iivviNK~D  140 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATM--------LSGAALMDGAILVVAANEPFPQPQTRE------HFVALGIIGVKNLIIVQNKVD  140 (403)
T ss_dssp             EEEEEEECCCCGGGHHHH--------HHHHTTCSEEEEEEETTSCSSCHHHHH------HHHHHHHHTCCCEEEEEECGG
T ss_pred             ceEEEEECCCcHHHHHHH--------HHHHhhCCEEEEEEECCCCCCcHHHHH------HHHHHHHcCCCCEEEEEECcc
Confidence            468899999965432222        23335689999999998642  11111      2334444443 6789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+.++.....+++.+.++....            ...+++++||++|+|+++|.+++.+.
T Consensus       141 l~~~~~~~~~~~~i~~~l~~~~~------------~~~~ii~vSA~~g~gi~~L~~~l~~~  189 (403)
T 3sjy_A          141 VVSKEEALSQYRQIKQFTKGTWA------------ENVPIIPVSALHKINIDSLIEGIEEY  189 (403)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTSTT------------TTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhhCC------------CCCEEEEEECCCCcChHHHHHHHHHh
Confidence            98764221122233333322211            12468899999999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.48  E-value=9.4e-14  Score=113.49  Aligned_cols=158  Identities=12%  Similarity=0.077  Sum_probs=91.4

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-++++|.+|+|||||+|+|+..    +........|.    +...+.                             
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~t~~~----~~~~~~-----------------------------   61 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN----EVVHTSPTIGS----NVEEIV-----------------------------   61 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT----SCEEEECCSSS----SCEEEE-----------------------------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC----CCCccCCcCce----eeEEEE-----------------------------
Confidence            34556889999999999999999953    22333333331    110000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHh
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIA  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~  186 (293)
                              ..+..+.|+||||.........        .....+|.+++|+|+.+.........   .+.....   ...
T Consensus        62 --------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~D~~~~~s~~~~~~---~~~~~~~~~~~~~  122 (181)
T 2h17_A           62 --------INNTRFLMWDIGGQESLRSSWN--------TYYTNTEFVIVVVDSTDRERISVTRE---ELYKMLAHEDLRK  122 (181)
T ss_dssp             --------ETTEEEEEEEESSSGGGTCGGG--------GGGTTCCEEEEEEETTCTTTHHHHHH---HHHHHHTCGGGTT
T ss_pred             --------ECCEEEEEEECCCCHhHHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHhChhhCC
Confidence                    1234678999999754322221        12246789999999986422111000   0111221   134


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+.++|+||+|+.+..    ...++.+.+....-.         ... ..++.+||++|+|++++..++.+
T Consensus       123 ~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~---------~~~-~~~~~~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          123 AGLLIFANKQDVKECM----TVAEISQFLKLTSIK---------DHQ-WHIQACCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             CEEEEEEECTTSTTCC----CHHHHHHHTTGGGCC---------SSC-EEEEECBTTTTBTHHHHHHHHHT
T ss_pred             CeEEEEEECCCcccCC----CHHHHHHHhCccccc---------CCc-eEEEEccCCCCcCHHHHHHHHHh
Confidence            5679999999997643    234444443211100         001 25788999999999999988753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.48  E-value=9.3e-14  Score=111.53  Aligned_cols=109  Identities=16%  Similarity=0.113  Sum_probs=65.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||||..........        .....|.+++|+|+..........    .+...+.+.   ..+.++|.||+|
T Consensus        55 ~~~~~~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~l~~~~~~~~~iilv~nK~D  122 (170)
T 1z0j_A           55 HKFLIWDTAGLERFRALAPM--------YYRGSAAAIIVYDITKEETFSTLK----NWVRELRQHGPPSIVVAIAGNKCD  122 (170)
T ss_dssp             EEEEEEEECCSGGGGGGTHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTSEEEEEEECTT
T ss_pred             EEEEEEcCCCchhhhcccHh--------hCcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCcEEEEEECCc
Confidence            45789999997543322221        124578899999998754322110    012222222   234677889999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+..+.  ..+......+..+               ..++.+|++++.|++++..++.+.
T Consensus       123 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~i~~~  166 (170)
T 1z0j_A          123 LTDVREV--MERDAKDYADSIH---------------AIFVETSAKNAININELFIEISRR  166 (170)
T ss_dssp             CGGGCCS--CHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCcCHHHHHHHHHHH
Confidence            9865432  2333443333322               246789999999999999888643

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.47  E-value=4.9e-13  Score=108.60  Aligned_cols=109  Identities=16%  Similarity=0.125  Sum_probs=67.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||..........        ....+|.+++|+|+..........    .+...+.+.   ..+.++|+||+|
T Consensus        61 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~p~i~v~nK~D  128 (181)
T 2efe_B           61 VKFEIWDTAGQERYHSLAPM--------YYRGAAAAIIVFDVTNQASFERAK----KWVQELQAQGNPNMVMALAGNKSD  128 (181)
T ss_dssp             EEEEEEECCCSGGGGGGTHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEEeCCCChhhhhhhHH--------HhccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCc
Confidence            45789999996543222211        124578999999998654321110    012222222   345789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+..+.  ..+++....+..+               ..++.+|+++|+|++++..++.+.
T Consensus       129 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~~  172 (181)
T 2efe_B          129 LLDARKV--TAEDAQTYAQENG---------------LFFMETSAKTATNVKEIFYEIARR  172 (181)
T ss_dssp             CTTTCCS--CHHHHHHHHHHTT---------------CEEEECCSSSCTTHHHHHHHHHHT
T ss_pred             ccccccC--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHHH
Confidence            9765432  3445555554332               146789999999999999988654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.47  E-value=1.4e-13  Score=111.44  Aligned_cols=158  Identities=18%  Similarity=0.108  Sum_probs=92.3

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-++++|.+|+|||||+|+|+.....      .....+ .+.+....           .+.+.               
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~-----------~~~~~---------------   60 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM------ADCPHT-IGVEFGTR-----------IIEVS---------------   60 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC------SSCTTS-CCCCEEEE-----------EEEET---------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCC------CCCCCc-cceEEEEE-----------EEEEC---------------
Confidence            4566889999999999999999953210      000111 11111000           00000               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~  187 (293)
                             .....+.|+||||..........+        ...+|.+++|+|+..........    .+...+.+   ...
T Consensus        61 -------~~~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~  121 (179)
T 1z0f_A           61 -------GQKIKLQIWDTAGQERFRAVTRSY--------YRGAAGALMVYDITRRSTYNHLS----SWLTDARNLTNPNT  121 (179)
T ss_dssp             -------TEEEEEEEEECTTGGGTCHHHHHH--------HHTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTC
T ss_pred             -------CeEEEEEEEECCCChHhhhhHHHH--------hccCCEEEEEEeCcCHHHHHHHH----HHHHHHHHhcCCCC
Confidence                   122457899999965433333221        24678899999998764432110    01111222   234


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.++|+||+|+.+..+  ...+++++..+..+               ..++.+|+++|+|++++..++.+
T Consensus       122 piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  174 (179)
T 1z0f_A          122 VIILIGNKADLEAQRD--VTYEEAKQFAEENG---------------LLFLEASAKTGENVEDAFLEAAK  174 (179)
T ss_dssp             EEEEEEECTTCGGGCC--SCHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cEEEEEECcccccccc--cCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            5799999999975433  23455555555432               24678999999999999888754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.47  E-value=4.4e-13  Score=107.73  Aligned_cols=158  Identities=18%  Similarity=0.115  Sum_probs=91.6

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-++++|.+|+|||||+|+|+.....      ...+.  .+.....+.                              
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~t--~~~~~~~~~------------------------------   47 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVV------TTIPT--IGFNVETVT------------------------------   47 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCC------CCCCC--SSEEEEEEE------------------------------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC------CcCCc--CccceEEEE------------------------------
Confidence            3456888999999999999999853211      11111  111110000                              


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~  187 (293)
                             .....+.++||||.........        .....+|.+++|+|+...........   .+......   ...
T Consensus        48 -------~~~~~~~~~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~  109 (171)
T 1upt_A           48 -------YKNLKFQVWDLGGLTSIRPYWR--------CYYSNTDAVIYVVDSCDRDRIGISKS---ELVAMLEEEELRKA  109 (171)
T ss_dssp             -------ETTEEEEEEEECCCGGGGGGGG--------GGCTTCSEEEEEEETTCCTTHHHHHH---HHHHHHTCGGGTTC
T ss_pred             -------ECCEEEEEEECCCChhhhHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhCCC
Confidence                   1234578999999765333221        12246899999999976422111000   01112111   245


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.++|+||+|+.+...    ..++...+......         ... ..++.+|+++|+|++++..++.+.
T Consensus       110 piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---------~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  166 (171)
T 1upt_A          110 ILVVFANKQDMEQAMT----SSEMANSLGLPALK---------DRK-WQIFKTSATKGTGLDEAMEWLVET  166 (171)
T ss_dssp             EEEEEEECTTSTTCCC----HHHHHHHHTGGGCT---------TSC-EEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCCCC----HHHHHHHhCchhcc---------CCc-eEEEECcCCCCcCHHHHHHHHHHH
Confidence            7899999999987542    34455444321110         011 257889999999999999888653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.47  E-value=1.1e-13  Score=111.06  Aligned_cols=110  Identities=17%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.++||||..........        ....+|.+++|+|+.+........    .+...+.+   -..+.++|+||+|
T Consensus        52 ~~~~~~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D  119 (170)
T 1ek0_A           52 VKFEIWDTAGQERFASLAPX--------YYRNAQAALVVYDVTKPQSFIKAR----HWVKELHEQASKDIIIALVGNKID  119 (170)
T ss_dssp             EEEEEEEECCSGGGGGGHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred             EEEEEEECCCChhhhhhhhh--------hhccCcEEEEEEecCChHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCC
Confidence            45789999996543332221        124678999999998754332210    01111111   1456789999999


Q ss_pred             CCCCCCC-cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERS-GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~-~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+.... ...........+..+               ..++.+||++|.|++++..++.+
T Consensus       120 l~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  165 (170)
T 1ek0_A          120 XLQEGGERKVAREEGEKLAEEKG---------------LLFFETSAKTGENVNDVFLGIGE  165 (170)
T ss_dssp             GGGSSCCCCSCHHHHHHHHHHHT---------------CEEEECCTTTCTTHHHHHHHHHT
T ss_pred             ccccccccCCCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            9765211 112233333333221               24688999999999999988864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.47  E-value=6.9e-13  Score=107.58  Aligned_cols=110  Identities=15%  Similarity=0.082  Sum_probs=61.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HH------HhccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ------IAFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q------i~~a~iivl  193 (293)
                      ..+.|+||||.........        .....+|.+++|+|+..........    .+...+ ..      ...+.++|+
T Consensus        58 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~p~ilv~  125 (182)
T 1ky3_A           58 ATMQVWDTAGQERFQSLGV--------AFYRGADCCVLVYDVTNASSFENIK----SWRDEFLVHANVNSPETFPFVILG  125 (182)
T ss_dssp             EEEEEECCC------------------CCSTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSCTTTCCEEEEE
T ss_pred             EEEEEEECCCChHhhhhhH--------HHhhcCCEEEEEEECCChHHHHHHH----HHHHHHHHHhcccCcCCCcEEEEE
Confidence            4578999999654333221        1224678999999998764322110    011111 11      234789999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ||+|+.+..+. .....+....+...              ...++.+|+++|+|++++..++.+
T Consensus       126 nK~Dl~~~~~~-v~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~~  174 (182)
T 1ky3_A          126 NKIDAEESKKI-VSEKSAQELAKSLG--------------DIPLFLTSAKNAINVDTAFEEIAR  174 (182)
T ss_dssp             ECTTSCGGGCC-SCHHHHHHHHHHTT--------------SCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             ECCcccccccc-CCHHHHHHHHHhcC--------------CCeEEEEecCCCCCHHHHHHHHHH
Confidence            99999654321 12334443333221              134688999999999999888754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.47  E-value=1.4e-13  Score=115.33  Aligned_cols=175  Identities=18%  Similarity=0.211  Sum_probs=89.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-++++|.+|+|||||+++|+.....      ...+.  ...+...+             .+.+              
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~------~~~~~--~~~~~~~~-------------~~~~--------------   50 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR------DTQTS--ITDSSAIY-------------KVNN--------------   50 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCC------CBCCC--CSCEEEEE-------------ECSS--------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcc------cccCC--cceeeEEE-------------EecC--------------
Confidence            4567889999999999999999964210      11111  11110000             0000              


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHH-HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-----
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-----  184 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~-~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-----  184 (293)
                             .....+.|+||||...... +...+        ...++++++|+|+.+..........  .+...+..     
T Consensus        51 -------~~~~~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~  113 (214)
T 2fh5_B           51 -------NRGNSLTLIDLPGHESLRFQLLDRF--------KSSARAVVFVVDSAAFQREVKDVAE--FLYQVLIDSMALK  113 (214)
T ss_dssp             -------TTCCEEEEEECCCCHHHHHHHHHHH--------GGGEEEEEEEEETTTHHHHHHHHHH--HHHHHHHHHHTST
T ss_pred             -------CCccEEEEEECCCChhHHHHHHHHH--------HhhCCEEEEEEECCCcCHHHHHHHH--HHHHHHhhhhhcc
Confidence                   1145688999999764433 22221        2467889999999875432221100  01111111     


Q ss_pred             HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc--CCCEEE--------EeecC----CCC------chhhcccccCC
Q 022736          185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN--SLAHVI--------RSVRC----QVD------LSEVLNCRAYD  244 (293)
Q Consensus       185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln--p~a~i~--------~~~~~----~~~------~~~i~~~sa~~  244 (293)
                      ...|.++|+||+|+.+..........+.+.+..+.  +...+-        +...+    .+.      ...++.+||++
T Consensus       114 ~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~  193 (214)
T 2fh5_B          114 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKG  193 (214)
T ss_dssp             TCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-
T ss_pred             cCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccC
Confidence            13578999999999876543223333333333111  100000        00000    001      23477899999


Q ss_pred             c------chhhhhhhhhhh
Q 022736          245 A------THVTRLEGLLEE  257 (293)
Q Consensus       245 ~------~~~~~l~~~l~~  257 (293)
                      |      .|++++..|+.+
T Consensus       194 g~~~~~~~gv~~lf~~l~~  212 (214)
T 2fh5_B          194 GRGDTGSADIQDLEKWLAK  212 (214)
T ss_dssp             ------CCBCHHHHHHHHH
T ss_pred             CCccccccChHHHHHHHHH
Confidence            9      999998888754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.47  E-value=3.1e-13  Score=112.13  Aligned_cols=161  Identities=16%  Similarity=0.111  Sum_probs=89.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-|+|+|.+|+|||||+|+|+.....   .......|    .+....           .+.+.              
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~----~~~~~~-----------~~~~~--------------   73 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR---ENISATLG----VDFQMK-----------TLIVD--------------   73 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------------CEEE-----------EEEET--------------
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCC---ccCCCCcc----ceeEEE-----------EEEEC--------------
Confidence            34556888999999999999999964211   01111111    110000           00000              


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---h
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---A  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~  186 (293)
                              .....+.|+||||..........+        ...+|.+++|+|+..........    .+...+.+.   .
T Consensus        74 --------~~~~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~iilv~d~~~~~s~~~~~----~~~~~i~~~~~~~  133 (199)
T 2p5s_A           74 --------GERTVLQLWDTAGQERFRSIAKSY--------FRKADGVLLLYDVTCEKSFLNIR----EWVDMIEDAAHET  133 (199)
T ss_dssp             --------TEEEEEEEEECTTCTTCHHHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHC---
T ss_pred             --------CEEEEEEEEECCCCcchhhhHHHH--------HhhCCEEEEEEECCChHHHHHHH----HHHHHHHHhcCCC
Confidence                    122457899999977655444322        24578999999998654432210    012222222   4


Q ss_pred             ccCEEEEeCCCCCCC----CCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSP----ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       187 ~a~iivlNK~D~~~~----~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+.++|+||+|+.+.    ..+........+..+..+               ..++.+||++|.|++++..++.+
T Consensus       134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~SA~~g~gv~el~~~l~~  193 (199)
T 2p5s_A          134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG---------------ALFCETSAKDGSNIVEAVLHLAR  193 (199)
T ss_dssp             CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccccccccccCHHHHHHHHHHcC---------------CeEEEeeCCCCCCHHHHHHHHHH
Confidence            678999999998631    001012233333333322               24678999999999999888754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.47  E-value=1.1e-13  Score=110.97  Aligned_cols=109  Identities=14%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||||..........        ....+|.+++|+|+..........    .+...+.+.   ..+.++|.||+|
T Consensus        55 ~~~~~~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iilv~nK~D  122 (170)
T 1r2q_A           55 VKFEIWDTAGQERYHSLAPM--------YYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKAD  122 (170)
T ss_dssp             EEEEEEEECCSGGGGGGHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred             EEEEEEeCCCcHHhhhhhHH--------hccCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence            45789999996543322221        224678999999998754322110    011122222   335677779999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+..+.  ...+.....+..+               ..++.+||++|+|++++..++.+.
T Consensus       123 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~i~~~  166 (170)
T 1r2q_A          123 LANKRAV--DFQEAQSYADDNS---------------LLFMETSAKTSMNVNEIFMAIAKK  166 (170)
T ss_dssp             GGGGCCS--CHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             Ccccccc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9764332  3344444443321               246789999999999999988653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.47  E-value=2.3e-13  Score=109.30  Aligned_cols=110  Identities=11%  Similarity=-0.004  Sum_probs=63.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||||..........    ..   ....|.+++|+|............   .+.......   ..|.++|.||+|
T Consensus        51 ~~~~i~D~~g~~~~~~~~~~----~~---~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~p~ilv~nK~D  120 (169)
T 3q85_A           51 VTLIVYDIWEQGDAGGWLQD----HC---LQTGDAFLIVFSVTDRRSFSKVPE---TLLRLRAGRPHHDLPVILVGNKSD  120 (169)
T ss_dssp             EEEEEECCCCC--------C----HH---HHHCSEEEEEEETTCHHHHHTHHH---HHHHHHHHSTTSCCCEEEEEECTT
T ss_pred             EEEEEEECCCccccchhhhh----hh---hccCCEEEEEEECCChHHHHHHHH---HHHHHHhcccCCCCCEEEEeeCcc
Confidence            45789999998654332211    11   134788999999987543221100   011111111   457899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ..+...+..+..+               ..++.+||++|+|++++..++.+
T Consensus       121 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~  163 (169)
T 3q85_A          121 LARSREV--SLEEGRHLAGTLS---------------CKHIETSAALHHNTRELFEGAVR  163 (169)
T ss_dssp             CGGGCCS--CHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             hhhcccC--CHHHHHHHHHHcC---------------CcEEEecCccCCCHHHHHHHHHH
Confidence            9754432  3444444444432               24578999999999999888754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.47  E-value=4.8e-13  Score=110.18  Aligned_cols=105  Identities=15%  Similarity=0.098  Sum_probs=66.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN  194 (293)
                      ..+.|+||||..........+        ...+|.+++|+|+........       ...++..+      ..+.++|+|
T Consensus        74 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~vi~v~D~~~~~s~~~-------~~~~l~~i~~~~~~~~piilv~n  138 (193)
T 2oil_A           74 VKAQIWDTAGLERYRAITSAY--------YRGAVGALLVFDLTKHQTYAV-------VERWLKELYDHAEATIVVMLVGN  138 (193)
T ss_dssp             EEEEEEEESCCCTTCTTHHHH--------HTTCCEEEEEEETTCHHHHHT-------HHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             EEEEEEeCCCchhhhhhhHHH--------hccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCeEEEEEE
Confidence            457899999976543333222        246788999999987543221       11222222      456799999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+|+.+..+.  .....+...+..+               ..++.+||++|+|++++..++.+
T Consensus       139 K~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  184 (193)
T 2oil_A          139 KSDLSQAREV--PTEEARMFAENNG---------------LLFLETSALDSTNVELAFETVLK  184 (193)
T ss_dssp             CGGGGGGCCS--CHHHHHHHHHHTT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred             CCCccccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            9999764332  3344444444321               24678999999999999888754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.47  E-value=1.6e-13  Score=112.27  Aligned_cols=158  Identities=15%  Similarity=0.166  Sum_probs=92.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-++++|.+|+|||||+++|...    .........|.    ....+.                              
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~----~~~~~~~t~g~----~~~~~~------------------------------   56 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE----DISHITPTQGF----NIKSVQ------------------------------   56 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS----CCEEEEEETTE----EEEEEE------------------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC----CCCcccCcCCe----EEEEEE------------------------------
Confidence            4567889999999999999999943    33333333331    110000                              


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~  187 (293)
                             .++..+.++||||...........        ...+|++++|+|+...........   .+...+..   -..
T Consensus        57 -------~~~~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~  118 (181)
T 1fzq_A           57 -------SQGFKLNVWDIGGQRKIRPYWRSY--------FENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCV  118 (181)
T ss_dssp             -------ETTEEEEEEECSSCGGGHHHHHHH--------HTTCSEEEEEEETTCGGGHHHHHH---HHHHHTTCGGGTTC
T ss_pred             -------ECCEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECcCHHHHHHHHH---HHHHHHhChhhcCC
Confidence                   123457899999976544333221        246789999999976432111000   01111111   245


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |.++|.||+|+.+...    .+++.+.+....-.       .   ....++.+||++|+|++++..|+.+.
T Consensus       119 piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~-------~---~~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (181)
T 1fzq_A          119 PVLIFANKQDLLTAAP----ASEIAEGLNLHTIR-------D---RVWQIQSCSALTGEGVQDGMNWVCKN  175 (181)
T ss_dssp             CEEEEEECTTSTTCCC----HHHHHHHTTGGGCC-------S---SCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CEEEEEECcCcccCCC----HHHHHHHhCchhcc-------C---CceEEEEccCCCCCCHHHHHHHHHHH
Confidence            7899999999986542    24444433211000       0   01257889999999999999998653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.46  E-value=1.6e-13  Score=110.07  Aligned_cols=108  Identities=14%  Similarity=0.096  Sum_probs=65.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||........        ......+|.+++|+|+......... .   .+...+.+.   ..+.++|+||+|
T Consensus        52 ~~~~l~D~~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~D  119 (170)
T 1g16_A           52 VKLQIWDTAGQERFRTIT--------TAYYRGAMGIILVYDITDERTFTNI-K---QWFKTVNEHANDEAQLLLVGNKSD  119 (170)
T ss_dssp             EEEEEECCTTGGGTSCCC--------HHHHTTEEEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEEeCCCChhhhhhH--------HHHhccCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCcEEEEEECcc
Confidence            457899999954322111        1122467889999999875432111 0   012222222   457799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+...   ..+...+..+..+               ..++.+|+++|+|++++..++.+.
T Consensus       120 l~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~~  162 (170)
T 1g16_A          120 METRVV---TADQGEALAKELG---------------IPFIESSAKNDDNVNEIFFTLAKL  162 (170)
T ss_dssp             CTTCCS---CHHHHHHHHHHHT---------------CCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCcCcc---CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHHH
Confidence            954331   2344444444332               146889999999999998887643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.46  E-value=1e-13  Score=112.40  Aligned_cols=162  Identities=19%  Similarity=0.114  Sum_probs=92.2

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..+.+.|+++|.+|+|||||+|+|+.....     ....++.  ..+....           .+.               
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-----~~~~~~~--~~~~~~~-----------~~~---------------   51 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVT-----EQEAGGI--TQHIGAY-----------QVT---------------   51 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSS-----CSSCCSS--STTCCCC-----------EEE---------------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccc-----cCCCCce--eEeeeEE-----------EEE---------------
Confidence            345778999999999999999999953210     0011111  1000000           000               


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                               .++..+.++||||........        ......+|.+++|+|+..........     ..........+
T Consensus        52 ---------~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~~~~~~~-----~l~~~~~~~~p  109 (178)
T 2lkc_A           52 ---------VNDKKITFLDTPGHEAFTTMR--------ARGAQVTDIVILVVAADDGVMPQTVE-----AINHAKAANVP  109 (178)
T ss_dssp             ---------ETTEEEEESCCCSSSSSSCSC--------CSSCCCCCEEEEEEETTCCCCHHHHH-----HHHHHGGGSCC
T ss_pred             ---------eCCceEEEEECCCCHHHHHHH--------HHHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHhCCCC
Confidence                     123457799999965432111        12335678899999987532111100     11122233567


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCC-chhhcccccCCcchhhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVD-LSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~-~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .++|+||+|+.+..     ..++...++.....+       .... ...++.+||++|+|++++..++..
T Consensus       110 ~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  167 (178)
T 2lkc_A          110 IIVAINKMDKPEAN-----PDRVMQELMEYNLVP-------EEWGGDTIFCKLSAKTKEGLDHLLEMILL  167 (178)
T ss_dssp             EEEEEETTTSSCSC-----HHHHHHHHTTTTCCB-------TTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEEECccCCcCC-----HHHHHHHHHhcCcCh-------hHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence            89999999998643     234444444332111       0010 135789999999999999988854

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.46  E-value=2.5e-13  Score=109.12  Aligned_cols=109  Identities=16%  Similarity=0.053  Sum_probs=68.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      ..+.++||||..+.........        ...|.+++|+|+.+........    .+...+.+.     ..+.++|+||
T Consensus        51 ~~~~~~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~pii~v~nK  118 (172)
T 2erx_A           51 CTLQITDTTGSHQFPAMQRLSI--------SKGHAFILVYSITSRQSLEELK----PIYEQICEIKGDVESIPIMLVGNK  118 (172)
T ss_dssp             EEEEEEECCSCSSCHHHHHHHH--------HHCSEEEEEEETTCHHHHHTTH----HHHHHHHHHHC---CCCEEEEEEC
T ss_pred             EEEEEEECCCchhhHHHHHHhc--------ccCCEEEEEEECcCHHHHHHHH----HHHHHHHHHhCCCCCCCEEEEEEc
Confidence            4578999999877655443322        3578899999998654321110    011222222     3578999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +|+.+..+.  .........+..+               ..++.+|+++|.|++++..++.+.
T Consensus       119 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~  164 (172)
T 2erx_A          119 CDESPSREV--QSSEAEALARTWK---------------CAFMETSAKLNHNVKELFQELLNL  164 (172)
T ss_dssp             GGGGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHHT
T ss_pred             ccccccccc--CHHHHHHHHHHhC---------------CeEEEecCCCCcCHHHHHHHHHHH
Confidence            999765432  2233333333221               246789999999999999998654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.46  E-value=5.6e-13  Score=110.99  Aligned_cols=109  Identities=15%  Similarity=0.119  Sum_probs=68.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.|+||||..........+        ...+|++++|+|+.+....... .   .+...+.+   ...+.++|+||+|
T Consensus        78 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~iilv~D~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~NK~D  145 (201)
T 2hup_A           78 VKLQIWDTAGQERFRTITQSY--------YRSANGAILAYDITKRSSFLSV-P---HWIEDVRKYAGSNIVQLLIGNKSD  145 (201)
T ss_dssp             EEEEEECCTTCGGGHHHHHHH--------HTTCSEEEEEEETTBHHHHHTH-H---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEEECCCcHhHHHHHHHH--------HhhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECCc
Confidence            457899999976554443322        2467899999999875432211 0   01112222   1356799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+  ...+++.+..+..+              ...++.+||++++|++++..++.+
T Consensus       146 l~~~~~--v~~~~~~~~~~~~~--------------~~~~~~~SA~~g~gi~~l~~~l~~  189 (201)
T 2hup_A          146 LSELRE--VSLAEAQSLAEHYD--------------ILCAIETSAKDSSNVEEAFLRVAT  189 (201)
T ss_dssp             CGGGCC--SCHHHHHHHHHHTT--------------CSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccc--cCHHHHHHHHHHcC--------------CCEEEEEeCCCCCCHHHHHHHHHH
Confidence            976432  23445555554432              125688999999999999988754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.46  E-value=1.8e-12  Score=106.14  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=68.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~  196 (293)
                      ..+.|+||||..........        ....+|++++|+|+..........    .+...+.+    ...+.++|+||+
T Consensus        70 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~  137 (195)
T 3bc1_A           70 IHLQLWDTAGLERFRSLTTA--------FFRDAMGFLLLFDLTNEQSFLNVR----NWISQLQMHAYSENPDIVLCGNKS  137 (195)
T ss_dssp             EEEEEEEECCSGGGHHHHHH--------TTTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSSSSSCCEEEEEECT
T ss_pred             EEEEEEeCCCcHHHHHHHHH--------HHcCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEECc
Confidence            46889999998654443322        224688999999998754432210    01111111    245789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+..+.  ..+.+.+..+..+               ..++.+|++++.|++++..++.+
T Consensus       138 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~  181 (195)
T 3bc1_A          138 DLEDQRAV--KEEEARELAEKYG---------------IPYFETSAANGTNISHAIEMLLD  181 (195)
T ss_dssp             TCGGGCCS--CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccccc--CHHHHHHHHHHcC---------------CCEEEEECCCCCCHHHHHHHHHH
Confidence            99764332  3344554444432               14678999999999999888754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.46  E-value=5.1e-13  Score=109.86  Aligned_cols=110  Identities=15%  Similarity=0.125  Sum_probs=69.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      ..+.|+||||..........+        ...+|++++|+|+......... ..+.....++.++     ..|.++|.||
T Consensus        74 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~D~~~~~~~~~~-~s~~~l~~~l~~~~~~~~~~piilv~NK  144 (198)
T 3t1o_A           74 TRFHLYTVPGQVFYNASRKLI--------LRGVDGIVFVADSAPNRLRANA-ESMRNMRENLAEYGLTLDDVPIVIQVNK  144 (198)
T ss_dssp             EEEEEEECCSCCSCSHHHHHH--------TTTCCEEEEEEECCGGGHHHHH-HHHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred             eEEEEEeCCChHHHHHHHHHH--------HhcCCEEEEEEECCcchhhHhH-HHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence            457899999977654444322        2467899999999843211110 0000012233332     4578999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.+..    ..+++++.++..+              ...++.+||++|+|++++..++.+
T Consensus       145 ~Dl~~~~----~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~l~~  188 (198)
T 3t1o_A          145 RDLPDAL----PVEMVRAVVDPEG--------------KFPVLEAVATEGKGVFETLKEVSR  188 (198)
T ss_dssp             TTSTTCC----CHHHHHHHHCTTC--------------CSCEEECBGGGTBTHHHHHHHHHH
T ss_pred             hhccccc----CHHHHHHHHHhcC--------------CceEEEEecCCCcCHHHHHHHHHH
Confidence            9997653    3455665554322              125788999999999999888754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.46  E-value=9.1e-14  Score=110.76  Aligned_cols=107  Identities=16%  Similarity=0.082  Sum_probs=67.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~  196 (293)
                      .++.++||||..+.......+.        ...|.+++++|+..........    .+...+.+.    ..+.++|+||+
T Consensus        51 ~~~~~~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~p~iiv~nK~  118 (166)
T 2ce2_X           51 CLLDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINNTKSFEDIH----QYREQIKRVKDSDDVPMVLVGNKS  118 (166)
T ss_dssp             EEEEEEECCCCSSCCHHHHHHH--------HHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHTCSCCCEEEEEECT
T ss_pred             EEEEEEECCCchhhhHHHHHhh--------ccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEEch
Confidence            4578999999776544443222        3578899999997654322110    011122221    46789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+...   ....+.+..+..+               ..++.+|+++|.|++++..++.+
T Consensus       119 Dl~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  161 (166)
T 2ce2_X          119 DLAARTV---ESRQAQDLARSYG---------------IPYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             TCSCCCS---CHHHHHHHHHHHT---------------CCEEEECTTTCTTHHHHHHHHHH
T ss_pred             hhhhccc---CHHHHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence            9987432   2344444444332               14678999999999999988864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.45  E-value=7.3e-13  Score=110.13  Aligned_cols=158  Identities=21%  Similarity=0.179  Sum_probs=89.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-|+|+|.+|+|||||+|+|+.....       .....+.+.+.....           +.+.               
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~-----------~~~~---------------   53 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-------NQYKATIGADFLTKE-----------VMVD---------------   53 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCC-------SSCCCCCSEEEEEEE-----------EESS---------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCC-------CCCCCcccceEEEEE-----------EEEC---------------
Confidence            3456888999999999999999964211       000000111111000           0000               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch-HHHHH-----
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQ-----  184 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~q-----  184 (293)
                             .....+.|+||||........        ......+|++|+|+|+..........    .+. .....     
T Consensus        54 -------~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~  114 (207)
T 1vg8_A           54 -------DRLVTMQIWDTAGQERFQSLG--------VAFYRGADCCVLVFDVTAPNTFKTLD----SWRDEFLIQASPRD  114 (207)
T ss_dssp             -------SCEEEEEEEEECSSGGGSCSC--------CGGGTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSS
T ss_pred             -------CEEEEEEEEeCCCcHHHHHhH--------HHHHhCCcEEEEEEECCCHHHHHHHH----HHHHHHHHhccccc
Confidence                   122457899999954322111        12224678999999998754322110    011 11111     


Q ss_pred             -HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          185 -IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       185 -i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                       -..+.++|+||+|+.+...   ..+.+....+...              ...++.+||++|.|++++..++.+
T Consensus       115 ~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~  171 (207)
T 1vg8_A          115 PENFPFVVLGNKIDLENRQV---ATKRAQAWCYSKN--------------NIPYFETSAKEAINVEQAFQTIAR  171 (207)
T ss_dssp             GGGSCEEEEEECTTSSCCCS---CHHHHHHHHHHTT--------------SCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCccccc---CHHHHHHHHHhcC--------------CceEEEEeCCCCCCHHHHHHHHHH
Confidence             2457899999999984332   2344444333211              134688999999999999888754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.45  E-value=8.2e-13  Score=108.98  Aligned_cols=107  Identities=16%  Similarity=0.139  Sum_probs=66.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch-HHHHHHhccCEEEEeCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~qi~~a~iivlNK~D~~  199 (293)
                      ..+.|+||||..........        ....+|.+++|+|+..........    .+. ........+.++|+||+| .
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~~~----~~~~~i~~~~~~piilv~NK~D-~  159 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPL--------YYRGATCAIVVFDISNSNTLDRAK----TWVNQLKISSNYIIILVANKID-K  159 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCCEEEEEEECTT-C
T ss_pred             eEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHHHH----HHHHHHHhhCCCcEEEEEECCC-c
Confidence            57899999995433222211        124678999999998764332210    011 111212357899999999 3


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ...+  ...+++.+.++..+               ..++.+||++|.|++++..++.+
T Consensus       160 ~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~  200 (208)
T 3clv_A          160 NKFQ--VDILEVQKYAQDNN---------------LLFIQTSAKTGTNIKNIFYMLAE  200 (208)
T ss_dssp             C-CC--SCHHHHHHHHHHTT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred             cccc--CCHHHHHHHHHHcC---------------CcEEEEecCCCCCHHHHHHHHHH
Confidence            3222  24566666666532               24678999999999999888754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.45  E-value=5.1e-14  Score=116.29  Aligned_cols=164  Identities=16%  Similarity=0.132  Sum_probs=91.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-++++|.+|+|||||++++....    .......    .+.+...+             .                 
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~----~~~~~~t----~~~~~~~~-------------~-----------------   63 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDR----LATLQPT----WHPTSEEL-------------A-----------------   63 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSC----CCCCCCC----CSCEEEEE-------------E-----------------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC----CCccccC----CCCCeEEE-------------E-----------------
Confidence            34467899999999999999999532    1111111    11111000             0                 


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~  187 (293)
                             .++.++.++||||..........        ....+|.+++|+|+...........   .+.....   .-..
T Consensus        64 -------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~  125 (190)
T 1m2o_B           64 -------IGNIKFTTFDLGGHIQARRLWKD--------YFPEVNGIVFLVDAADPERFDEARV---ELDALFNIAELKDV  125 (190)
T ss_dssp             -------ETTEEEEEEECCCSGGGTTSGGG--------GCTTCCEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTTC
T ss_pred             -------ECCEEEEEEECCCCHHHHHHHHH--------HHhcCCEEEEEEECCChHHHHHHHH---HHHHHHcchhhcCC
Confidence                   12245789999997653322211        1246789999999986532211100   0111111   1245


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |.++|.||+|+.+..    ..+++.+.++.......-.  . .......++.+||++|+|++++.+++.+
T Consensus       126 piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          126 PFVILGNKIDAPNAV----SEAELRSALGLLNTTGSQR--I-EGQRPVEVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             CEEEEEECTTSTTCC----CHHHHHHHTTCSSCCC-----C-CSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             CEEEEEECCCCcCCC----CHHHHHHHhCCcccccccc--c-cccceEEEEEeECCcCCCHHHHHHHHHh
Confidence            789999999997632    3455555544322000000  0 0111235789999999999999988854

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.45  E-value=1.1e-13  Score=113.29  Aligned_cols=159  Identities=14%  Similarity=0.124  Sum_probs=90.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-++++|.+|+|||||+|+++..    +    ......+.+.....+.                             
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~----~----~~~~~~t~~~~~~~~~-----------------------------   58 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE----D----VDTISPTLGFNIKTLE-----------------------------   58 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC----C----CSSCCCCSSEEEEEEE-----------------------------
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC----C----CCcccccCccceEEEE-----------------------------
Confidence            34556888999999999999999943    2    0111111111110000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hh
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IA  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~  186 (293)
                              .++..+.++||||..+.....        ......+|.+++|+|+.+.........   .+......   ..
T Consensus        59 --------~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~  119 (186)
T 1ksh_A           59 --------HRGFKLNIWDVGGQKSLRSYW--------RNYFESTDGLIWVVDSADRQRMQDCQR---ELQSLLVEERLAG  119 (186)
T ss_dssp             --------ETTEEEEEEEECCSHHHHTTG--------GGGCTTCSEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTT
T ss_pred             --------ECCEEEEEEECCCCHhHHHHH--------HHHhcCCCEEEEEEECcCHHHHHHHHH---HHHHHHhChhcCC
Confidence                    123457899999974322221        122356889999999976532211000   01112111   24


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+.++|+||+|+.+..    ...++.+.+......         . ....++.+||++|+|++++..++.+.
T Consensus       120 ~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~---------~-~~~~~~~~Sa~~~~gi~~l~~~l~~~  177 (186)
T 1ksh_A          120 ATLLIFANKQDLPGAL----SCNAIQEALELDSIR---------S-HHWRIQGCSAVTGEDLLPGIDWLLDD  177 (186)
T ss_dssp             CEEEEEEECTTSTTCC----CHHHHHHHTTGGGCC---------S-SCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CcEEEEEeCccCCCCC----CHHHHHHHhChhhcc---------C-CceEEEEeeCCCCCCHHHHHHHHHHH
Confidence            5789999999998754    234444443211000         0 01257889999999999999888653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.45  E-value=5.8e-13  Score=107.73  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=67.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||..........        ....+|.+++|+|+..........    .+...+.+.   ..+.++|+||+|
T Consensus        63 ~~~~~~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~nK~D  130 (179)
T 2y8e_A           63 VRLQLWDTAGQERFRSLIPS--------YIRDSTVAVVVYDITNTNSFHQTS----KWIDDVRTERGSDVIIMLVGNKTD  130 (179)
T ss_dssp             EEEEEEEECCSGGGGGGSHH--------HHHTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTTSSEEEEEEECGG
T ss_pred             EEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCc
Confidence            35789999996544332221        124678899999997654321110    011111111   345799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+..+.  .........+..+               ..++.+|+++|.|++++..++.+.
T Consensus       131 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~~  174 (179)
T 2y8e_A          131 LSDKRQV--STEEGERKAKELN---------------VMFIETSAKAGYNVKQLFRRVAAA  174 (179)
T ss_dssp             GGGGCCS--CHHHHHHHHHHHT---------------CEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred             ccccCcC--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9765432  3344444444432               246789999999999999888653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.45  E-value=8.8e-14  Score=115.68  Aligned_cols=154  Identities=16%  Similarity=0.144  Sum_probs=90.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-|+|+|.+|+|||||+|+|+.....      .....+ .+.+....            ..+                
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~------------~~~----------------   67 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFS------EGYDPT-VENTYSKI------------VTL----------------   67 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC------SCCCCC-SEEEEEEE------------EC-----------------
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCC------CCCCCc-cceEEEEE------------EEE----------------
Confidence            4556889999999999999999964211      000010 11110000            000                


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----  185 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----  185 (293)
                            ......+.|+||||.........        .....+|++++|+|+.........       ..++..+     
T Consensus        68 ------~~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~-------~~~~~~i~~~~~  126 (201)
T 3oes_A           68 ------GKDEFHLHLVDTAGQDEYSILPY--------SFIIGVHGYVLVYSVTSLHSFQVI-------ESLYQKLHEGHG  126 (201)
T ss_dssp             ---------CEEEEEEEECCCCTTCCCCG--------GGTTTCCEEEEEEETTCHHHHHHH-------HHHHHHHHC---
T ss_pred             ------CCEEEEEEEEECCCccchHHHHH--------HHHhcCCEEEEEEeCCCHHHHHHH-------HHHHHHHHHhcC
Confidence                  01235578999999654322221        122467899999999865432211       1122221     


Q ss_pred             --hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 --AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 --~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                        ..+.++|+||+|+.+..+.  .........+..+               ..++.+||++|.|++++..++.+
T Consensus       127 ~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~  183 (201)
T 3oes_A          127 KTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWG---------------ATFMESSARENQLTQGIFTKVIQ  183 (201)
T ss_dssp             --CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT---------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECccCcccccc--CHHHHHHHHHHhC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence              4578999999999865432  3334444444332               24678999999999999888754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.45  E-value=1.3e-13  Score=115.07  Aligned_cols=184  Identities=17%  Similarity=0.196  Sum_probs=93.9

Q ss_pred             eEEEccccccccCcccC---CCCceeEEEEEecCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCccccchhhhhcCCCCc
Q 022736           11 AVRIDETTHEFSNSHEN---DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGA   86 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~---~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~-vavv~~d~g~~~~~d~~~~~~~~~~~   86 (293)
                      .+++.++++.|+. ..+   .-.+-..++++|++|||||||+|+|+    +.. .+.+....|.+....  .        
T Consensus         3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~----g~~~~~~~~~~~G~~~~~~--~--------   67 (210)
T 1pui_A            3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT----NQKSLARTSKTPGRTQLIN--L--------   67 (210)
T ss_dssp             --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTC----CC-------------CCEE--E--------
T ss_pred             chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHh----CCCccccccCCCccceeeE--E--------
Confidence            4678888887753 222   33345679999999999999999998    433 333444455311000  0        


Q ss_pred             chhhhhhccCcceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcH------HHHHhhhcchhhccccccccEEEEE
Q 022736           87 LVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA------PLASVLWLDDQLESAVRLDSIITVV  160 (293)
Q Consensus        87 ~~~~~~~l~~gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~------~~~~~~~~~~~~~~~~~~d~vi~vv  160 (293)
                           ..                        ..+ .+.++||||+....      ...... ...+++....++.+++++
T Consensus        68 -----~~------------------------~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~  116 (210)
T 1pui_A           68 -----FE------------------------VAD-GKRLVDLPGYGYAEVPEEMKRKWQRA-LGEYLEKRQSLQGLVVLM  116 (210)
T ss_dssp             -----EE------------------------EET-TEEEEECCCCC------CCHHHHHHH-HHHHHHHCTTEEEEEEEE
T ss_pred             -----EE------------------------ecC-CEEEEECcCCcccccCHHHHHHHHHH-HHHHHHhhhcccEEEEEE
Confidence                 00                        011 46799999975421      111111 112233334567889999


Q ss_pred             cccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhccc
Q 022736          161 DAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC  240 (293)
Q Consensus       161 Da~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~  240 (293)
                      |........+..     ...++.....+.+++.||+|+.+..++......+++.++....             ....+++
T Consensus       117 d~~~~~~~~~~~-----~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~  178 (210)
T 1pui_A          117 DIRHPLKDLDQQ-----MIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG-------------DVQVETF  178 (210)
T ss_dssp             ETTSCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS-------------CEEEEEC
T ss_pred             ECCCCCchhHHH-----HHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC-------------CCceEEE
Confidence            987543221110     2233444566778889999998753210112333444432211             1235789


Q ss_pred             ccCCcchhhhhhhhhhhh
Q 022736          241 RAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       241 sa~~~~~~~~l~~~l~~~  258 (293)
                      |++++.+++++.+++.+.
T Consensus       179 Sal~~~~~~~l~~~l~~~  196 (210)
T 1pui_A          179 SSLKKQGVDKLRQKLDTW  196 (210)
T ss_dssp             BTTTTBSHHHHHHHHHHH
T ss_pred             eecCCCCHHHHHHHHHHH
Confidence            999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.45  E-value=6.6e-14  Score=114.49  Aligned_cols=106  Identities=17%  Similarity=0.079  Sum_probs=64.0

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD  197 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~D  197 (293)
                      .+.|+||||......+...+        ....+.+++|+|...........    .+...+.+    -..+.++|+||+|
T Consensus        53 ~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~i~v~nK~D  120 (189)
T 4dsu_A           53 LLDILDTAGQEEYSAMRDQY--------MRTGEGFLCVFAINNTKSFEDIH----HYREQIKRVKDSEDVPMVLVGNKCD  120 (189)
T ss_dssp             EEEEEECCCC---CTTHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred             EEEEEECCCcHHHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECcc
Confidence            46689999966543333222        13578899999998654322110    01111222    1357899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+...   ..+.+....+..+               ..++.+||++|.|++++..++.+
T Consensus       121 l~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~  162 (189)
T 4dsu_A          121 LPSRTV---DTKQAQDLARSYG---------------IPFIETSAKTRQGVDDAFYTLVR  162 (189)
T ss_dssp             SSSCSS---CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred             Cccccc---CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence            986542   2344444444432               24678999999999999888754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.45  E-value=1.1e-13  Score=113.75  Aligned_cols=159  Identities=16%  Similarity=0.128  Sum_probs=90.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-|+|+|.+|+|||||+|+|+.....       .....+.+.+...+.                              
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~------------------------------   63 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFN-------EDMIPTVGFNMRKIT------------------------------   63 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCCCCSEEEEEEE------------------------------
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCC-------CccCCCCceeEEEEE------------------------------
Confidence            3445778999999999999999953211       000111111111010                              


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hhc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~  187 (293)
                             ..+..+.|+||||..+.......        ....+|++++|+|+...........   .+......   ...
T Consensus        64 -------~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~D~~~~~s~~~~~~---~~~~~~~~~~~~~~  125 (188)
T 1zd9_A           64 -------KGNVTIKLWDIGGQPRFRSMWER--------YCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGI  125 (188)
T ss_dssp             -------ETTEEEEEEEECCSHHHHTTHHH--------HHTTCSEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTTC
T ss_pred             -------eCCEEEEEEECCCCHhHHHHHHH--------HHccCCEEEEEEECCCHHHHHHHHH---HHHHHHhCcccCCC
Confidence                   12356789999996533222211        1246789999999976432211100   01112221   245


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.++|+||+|+.+...    ..++...+......          .....++.+||++|.|++++..++.+.
T Consensus       126 piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~SA~~g~gv~~l~~~l~~~  182 (188)
T 1zd9_A          126 PVLVLGNKRDLPGALD----EKELIEKMNLSAIQ----------DREICCYSISCKEKDNIDITLQWLIQH  182 (188)
T ss_dssp             CEEEEEECTTSTTCCC----HHHHHHHTTGGGCC----------SSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCccCCC----HHHHHHHhChhhhc----------cCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999986532    23444333211100          011346889999999999999988654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.45  E-value=1.2e-12  Score=109.04  Aligned_cols=108  Identities=16%  Similarity=0.093  Sum_probs=65.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||........        ......+|.+++|+|+..........    .+...+.+.   ..+.++|+||+|
T Consensus        57 ~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~vilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~nK~D  124 (206)
T 2bcg_Y           57 VKLQIWDTAGQERFRTIT--------SSYYRGSHGIIIVYDVTDQESFNGVK----MWLQEIDRYATSTVLKLLVGNKCD  124 (206)
T ss_dssp             EEEEEECCTTTTTTTCCC--------GGGGTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEEeCCChHHHHHHH--------HHhccCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECCC
Confidence            457899999965432222        12224678999999998754322210    011122221   246799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ..+......+..+               ..++.+||++|+|++++..++.+
T Consensus       125 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~  167 (206)
T 2bcg_Y          125 LKDKRVV--EYDVAKEFADANK---------------MPFLETSALDSTNVEDAFLTMAR  167 (206)
T ss_dssp             CTTTCCS--CHHHHHHHHHHTT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred             Ccccccc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence            9865432  2334444433321               24678999999999999887754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.45  E-value=3.5e-13  Score=111.03  Aligned_cols=108  Identities=18%  Similarity=0.028  Sum_probs=65.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||........        ......+|++++|+|+..........    .+...+.+.   ..+.++|+||+|
T Consensus        70 ~~~~i~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~----~~l~~i~~~~~~~~piilv~nK~D  137 (191)
T 2a5j_A           70 IKLQIWDTAGQESFRSIT--------RSYYRGAAGALLVYDITRRETFNHLT----SWLEDARQHSSSNMVIMLIGNKSD  137 (191)
T ss_dssp             EEEEEECCTTGGGTSCCC--------HHHHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEEECCCchhhhhhH--------HHHhccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECcc
Confidence            457899999954322111        11224678999999998754322110    011122221   456799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ..+......+..+               ..++.+||++++|++++..++.+
T Consensus       138 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  180 (191)
T 2a5j_A          138 LESRRDV--KREEGEAFAREHG---------------LIFMETSAKTACNVEEAFINTAK  180 (191)
T ss_dssp             CGGGCCS--CHHHHHHHHHHHT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred             cCCcccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            9764332  2344444444332               14678999999999999888754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.45  E-value=9e-14  Score=113.33  Aligned_cols=158  Identities=17%  Similarity=0.119  Sum_probs=88.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-++++|.+|+|||||+|+++    +.+........|    .....+.                             
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~----~~~~~~~~~t~~----~~~~~~~-----------------------------   58 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ----IGEVVTTKPTIG----FNVETLS-----------------------------   58 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC----CSEEEEECSSTT----CCEEEEE-----------------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh----cCCcCccCCcCc----cceEEEE-----------------------------
Confidence            445668889999999999999998    344422222222    1110000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHh
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIA  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~  186 (293)
                              ..+..+.++||||.........        .....+|.+++|+|+...........   .+.....   ...
T Consensus        59 --------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~  119 (183)
T 1moz_A           59 --------YKNLKLNVWDLGGQTSIRPYWR--------CYYADTAAVIFVVDSTDKDRMSTASK---ELHLMLQEEELQD  119 (183)
T ss_dssp             --------ETTEEEEEEEEC----CCTTGG--------GTTTTEEEEEEEEETTCTTTHHHHHH---HHHHHTTSSTTSS
T ss_pred             --------ECCEEEEEEECCCCHhHHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHcChhhCC
Confidence                    1234578999999765322221        12246889999999875422111000   0111111   123


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+.++|+||+|+.+..    ...++.+.+....-.         . ....++.+|+++|+|++++.+++.+
T Consensus       120 ~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~---------~-~~~~~~~~Sa~~~~gi~~l~~~l~~  176 (183)
T 1moz_A          120 AALLVFANKQDQPGAL----SASEVSKELNLVELK---------D-RSWSIVASSAIKGEGITEGLDWLID  176 (183)
T ss_dssp             CEEEEEEECTTSTTCC----CHHHHHHHTTTTTCC---------S-SCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCCC----CHHHHHHHhCccccc---------C-CceEEEEccCCCCcCHHHHHHHHHH
Confidence            5779999999997653    234444443321100         0 1125788999999999999988864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.45  E-value=6.2e-13  Score=106.24  Aligned_cols=114  Identities=13%  Similarity=0.042  Sum_probs=67.4

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~  196 (293)
                      +..+.++||||...........        ...+|.+++|+|+.+.........   .+......   -..+.++|+||+
T Consensus        43 ~~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~piilv~nK~  111 (164)
T 1r8s_A           43 NISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQ  111 (164)
T ss_dssp             SCEEEEEECCCCGGGHHHHHHH--------TTTCSEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTTCEEEEEEECT
T ss_pred             CEEEEEEEcCCChhhHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhcCCeEEEEEECc
Confidence            3568899999986544433222        256789999999976532211100   01111111   145789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+.+..    ...++...+....-..         . ...++.+||++|.|++++..++.+.
T Consensus       112 Dl~~~~----~~~~~~~~~~~~~~~~---------~-~~~~~~~Sa~~~~gi~~l~~~l~~~  159 (164)
T 1r8s_A          112 DLPNAM----NAAEITDKLGLHSLRH---------R-NWYIQATCATSGDGLYEGLDWLSNQ  159 (164)
T ss_dssp             TSTTCC----CHHHHHHHTTGGGCSS---------C-CEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             CCcCCC----CHHHHHHHhCcccccC---------c-cEEEEEcccCCCcCHHHHHHHHHHH
Confidence            997653    2344443332111000         0 1247889999999999999888653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.44  E-value=2.7e-13  Score=109.96  Aligned_cols=158  Identities=15%  Similarity=0.052  Sum_probs=89.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-++++|.+|+|||||+|+|+....      .....++ .+.+..  .          .....               
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~t-~~~~~~--~----------~~~~~---------------   53 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYF------VSDYDPT-IEDSYT--K----------ICSVD---------------   53 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSC------CSSCCTT-CCEEEE--E----------EEEET---------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcC------ccccCCC-cCceEE--E----------EEEEC---------------
Confidence            456688999999999999999996410      0111111 111100  0          00000               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~  187 (293)
                             .....+.|+||||..+.......+        ....+.+++|+|............   .+.......   ..
T Consensus        54 -------~~~~~~~~~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~  115 (181)
T 2fn4_A           54 -------GIPARLDILDTAGQEEFGAMREQY--------MRAGHGFLLVFAINDRQSFNEVGK---LFTQILRVKDRDDF  115 (181)
T ss_dssp             -------TEEEEEEEEECCCTTTTSCCHHHH--------HHHCSEEEEEEETTCHHHHHHHHH---HHHHHHHHHTSSCC
T ss_pred             -------CEEEEEEEEECCCchhhHHHHHHH--------HhhCCEEEEEEeCCCHHHHHHHHH---HHHHHHHhcCCCCC
Confidence                   012457899999976543333221        135788999999987543221100   011121222   34


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.++|+||+|+.+..+.  .........+..+               ..++.+|+++|+|++++..++.+
T Consensus       116 piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~  168 (181)
T 2fn4_A          116 PVVLVGNKADLESQRQV--PRSEASAFGASHH---------------VAYFEASAKLRLNVDEAFEQLVR  168 (181)
T ss_dssp             CEEEEEECGGGGGGCCS--CHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CEEEEEECccccccccc--CHHHHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence            78999999999765432  2233333333221               24678999999999999888754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.44  E-value=4.3e-13  Score=110.10  Aligned_cols=107  Identities=16%  Similarity=0.079  Sum_probs=63.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~  196 (293)
                      .++.|+||||..+.......        .....+.+++|+|...........    .+...+...    ..+.++|+||+
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~p~ilv~nK~  136 (190)
T 3con_A           69 CLLDILDTAGQEEYSAMRDQ--------YMRTGEGFLCVFAINNSKSFADIN----LYREQIKRVKDSDDVPMVLVGNKC  136 (190)
T ss_dssp             EEEEEEECCC-------------------CTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHTCSCCCEEEEEECT
T ss_pred             EEEEEEECCChHHHHHHHHH--------hhCcCCEEEEEEECcCHHHHHHHH----HHHHHHHHHhCCCCCeEEEEEECC
Confidence            45789999996544333221        224678899999998654322110    012222222    35789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+..   ...+.+.+..+..+               ..++.+|++++.|++++..++.+
T Consensus       137 Dl~~~~---~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  179 (190)
T 3con_A          137 DLPTRT---VDTKQAHELAKSYG---------------IPFIETSAKTRQGVEDAFYTLVR  179 (190)
T ss_dssp             TCSCCC---SCHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cCCccc---CCHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence            998633   23445555554432               14688999999999999888754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.44  E-value=6.9e-13  Score=109.60  Aligned_cols=160  Identities=16%  Similarity=0.116  Sum_probs=87.9

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..+..-++++|.+|+|||||+++++...    ..  ...+.  .+.....+.                            
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~----~~--~~~~t--~~~~~~~~~----------------------------   69 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGE----IV--TTIPT--IGFNVETVE----------------------------   69 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSC----CE--EEEEE--TTEEEEEEE----------------------------
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCC----cc--ccCCc--CceeEEEEE----------------------------
Confidence            3445568889999999999999998431    11  11111  111100000                            


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---H
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---I  185 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i  185 (293)
                               ..+..+.|+||||..........        ....+|++++|+|+...........   .+......   -
T Consensus        70 ---------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~~---~l~~~~~~~~~~  129 (192)
T 2b6h_A           70 ---------YKNICFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRERVQESAD---ELQKMLQEDELR  129 (192)
T ss_dssp             ---------ETTEEEEEEECC-----CTTHHH--------HHHTCCEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGT
T ss_pred             ---------ECCEEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCCHHHHHHHHH---HHHHHhcccccC
Confidence                     12346789999997543222211        1246789999999976532211100   01111111   1


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ..+.++|+||+|+.+..    ...++...+.......          ....++.+||++|.|++++..++.+.
T Consensus       130 ~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~----------~~~~~~~~SA~~g~gi~~l~~~l~~~  188 (192)
T 2b6h_A          130 DAVLLVFANKQDMPNAM----PVSELTDKLGLQHLRS----------RTWYVQATCATQGTGLYDGLDWLSHE  188 (192)
T ss_dssp             TCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSS----------CCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCCCCC----CHHHHHHHhCcccccC----------CceEEEECcCCCcCCHHHHHHHHHHH
Confidence            45789999999997653    2344444332211100          01246889999999999999888643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.44  E-value=1.5e-13  Score=113.19  Aligned_cols=109  Identities=12%  Similarity=0.076  Sum_probs=66.7

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~  196 (293)
                      ...+.|+||||..........        ....+|++++|+|+.+....... .   .+...+.+   -..+.++|+||+
T Consensus        71 ~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~  138 (191)
T 3dz8_A           71 RVKLQIWDTAGQERYRTITTA--------YYRGAMGFILMYDITNEESFNAV-Q---DWATQIKTYSWDNAQVILVGNKC  138 (191)
T ss_dssp             TEEEEEECHHHHHHCHHHHHH--------HHTTCCEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTCEEEEEEECT
T ss_pred             EEEEEEEeCCChHHHHHHHHH--------HHccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECC
Confidence            345789999995433333222        12467889999999865432111 0   01222222   145679999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+....  .........+..+               ..++.+|+++|.|++++..++.+
T Consensus       139 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  182 (191)
T 3dz8_A          139 DMEEERVV--PTEKGQLLAEQLG---------------FDFFEASAKENISVRQAFERLVD  182 (191)
T ss_dssp             TCGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCcccccc--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence            98764432  3344444444432               24678999999999999888754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.43  E-value=6.1e-13  Score=109.73  Aligned_cols=113  Identities=12%  Similarity=0.052  Sum_probs=70.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||.........        .....+|++++|+|+...........   .+...+.+.  ..+.++|.||+|+
T Consensus        71 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl  139 (194)
T 3reg_A           71 FILHLWDTAGQEEYDRLRP--------LSYADSDVVLLCFAVNNRTSFDNIST---KWEPEIKHYIDTAKTVLVGLKVDL  139 (194)
T ss_dssp             EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTSEEEEEEECGGG
T ss_pred             EEEEEEECCCcHHHHHHhH--------hhccCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence            3468999999543322221        12246789999999987654322100   122222222  3578999999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+...+....+.+....+.++-              ..++.+||++|+|++++..++.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~gi~~l~~~l~~~  185 (194)
T 3reg_A          140 RKDGSDDVTKQEGDDLCQKLGC--------------VAYIEASSVAKIGLNEVFEKSVDC  185 (194)
T ss_dssp             CCTTTTCCCHHHHHHHHHHHTC--------------SCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccCCCCcccHHHHHHHHHhcCC--------------CEEEEeecCCCCCHHHHHHHHHHH
Confidence            8643222345556655555432              237889999999999998887653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.43  E-value=1.4e-12  Score=105.51  Aligned_cols=109  Identities=10%  Similarity=0.019  Sum_probs=66.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hcc-CEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA-DVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a-~iivlN  194 (293)
                      ..+.++||||..........+        ...+|.+++|+|+.+....... .   .+...+.+.     ..+ .++|+|
T Consensus        56 ~~~~~~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~~~~iilv~n  123 (178)
T 2hxs_A           56 VTLQIWDIGGQTIGGKMLDKY--------IYGAQGVLLVYDITNYQSFENL-E---DWYTVVKKVSEESETQPLVALVGN  123 (178)
T ss_dssp             EEEEEEECTTCCTTCTTHHHH--------HTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred             EEEEEEECCCCccccchhhHH--------HhhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHHhcccCCCCeEEEEEE
Confidence            467899999976543333222        2467899999999875442211 0   011122221     234 578999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+|+.+..+.  ..+......+..+               ..++.+||++|+|++++..++.+.
T Consensus       124 K~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~  170 (178)
T 2hxs_A          124 KIDLEHMRTI--KPEKHLRFCQENG---------------FSSHFVSAKTGDSVFLCFQKVAAE  170 (178)
T ss_dssp             CGGGGGGCSS--CHHHHHHHHHHHT---------------CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             cccccccccc--CHHHHHHHHHHcC---------------CcEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999764321  2344444444332               135789999999999999988654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.43  E-value=3.1e-13  Score=111.11  Aligned_cols=104  Identities=15%  Similarity=0.078  Sum_probs=65.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl  193 (293)
                      ..+.|+||||..........        ....+|.+++|+|+........       ...++.++       ..+.++|+
T Consensus        64 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~p~ilv~  128 (195)
T 1x3s_A           64 AKLAIWDTAGQERFRTLTPS--------YYRGAQGVILVYDVTRRDTFVK-------LDNWLNELETYCTRNDIVNMLVG  128 (195)
T ss_dssp             EEEEEEEECSSGGGCCSHHH--------HHTTCCEEEEEEETTCHHHHHT-------HHHHHHHHTTCCSCSCCEEEEEE
T ss_pred             EEEEEEeCCCchhhhhhhHH--------HhccCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCcCCCcEEEEE
Confidence            45789999996543222211        2246789999999987543321       11222222       24568999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ||+|+.+.+   ..........+..+               ..++.+|++++.|++++..++.+
T Consensus       129 nK~Dl~~~~---~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  174 (195)
T 1x3s_A          129 NKIDKENRE---VDRNEGLKFARKHS---------------MLFIEASAKTCDGVQCAFEELVE  174 (195)
T ss_dssp             ECTTSSSCC---SCHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ECCcCcccc---cCHHHHHHHHHHcC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence            999995433   23344444444332               23678999999999999888754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.43  E-value=1.9e-13  Score=128.84  Aligned_cols=113  Identities=17%  Similarity=0.152  Sum_probs=70.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      ..+.|+||||..+.   .     .........+|.+++|+|+.........     +....+.+...+.++++||+|+.+
T Consensus        73 ~~i~iiDtPGh~~~---~-----~~~~~~~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~ip~IvviNK~Dl~~  139 (482)
T 1wb1_A           73 YRITLVDAPGHADL---I-----RAVVSAADIIDLALIVVDAKEGPKTQTG-----EHMLILDHFNIPIIVVITKSDNAG  139 (482)
T ss_dssp             EEEEECCCSSHHHH---H-----HHHHHHTTSCCEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCBCEEEECTTSSC
T ss_pred             EEEEEEECCChHHH---H-----HHHHHHHhhCCEEEEEEecCCCccHHHH-----HHHHHHHHcCCCEEEEEECCCccc
Confidence            46899999996331   1     1123344678999999999764322111     023345566778899999999987


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ++......+++.+.++...           .+...+++++||++|+|+++|.+++.+
T Consensus       140 ~~~~~~~~~~l~~~l~~~~-----------~~~~~~ii~vSA~~g~gI~~L~~~L~~  185 (482)
T 1wb1_A          140 TEEIKRTEMIMKSILQSTH-----------NLKNSSIIPISAKTGFGVDELKNLIIT  185 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHSS-----------SGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhc-----------ccccceEEEEECcCCCCHHHHHHHHHH
Confidence            4321112233333333220           011245789999999999999988865

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.42  E-value=6.3e-13  Score=120.74  Aligned_cols=164  Identities=19%  Similarity=0.227  Sum_probs=91.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+.+.++++|.+|+|||||+|+|+.    ... .+...++.+..+....+.                             
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~----~~~-~~~~~~~~t~~~~~~~~~-----------------------------  210 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTT----AKP-EIASYPFTTRGINVGQFE-----------------------------  210 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCS----SCC-EEECCTTCSSCEEEEEEE-----------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCCeeeceeEEEEE-----------------------------
Confidence            4677899999999999999999994    332 233333331211100000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHHH-
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQI-  185 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~qi-  185 (293)
                              ..+.++.++||||+.+..... ...............|.+++|+|++...  +..... ..  +....... 
T Consensus       211 --------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~-~~--~~~i~~~~~  279 (357)
T 2e87_A          211 --------DGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQI-HL--FEEVHGEFK  279 (357)
T ss_dssp             --------ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHH-HH--HHHHHHHTT
T ss_pred             --------ecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHH-HH--HHHHHHhcC
Confidence                    123457899999975531100 0000001111123478899999976532  111100 00  11112212 


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ..+.++|+||+|+.+..    ..+.+.+.++..+               .+++.+||++|+|++++.+++.+
T Consensus       280 ~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~---------------~~~~~iSA~~g~gi~~l~~~i~~  332 (357)
T 2e87_A          280 DLPFLVVINKIDVADEE----NIKRLEKFVKEKG---------------LNPIKISALKGTGIDLVKEEIIK  332 (357)
T ss_dssp             TSCEEEEECCTTTCCHH----HHHHHHHHHHHTT---------------CCCEECBTTTTBTHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCChH----HHHHHHHHHHhcC---------------CCeEEEeCCCCcCHHHHHHHHHH
Confidence            57889999999998643    2233433333211               24688999999999999988864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.42  E-value=2.3e-13  Score=120.15  Aligned_cols=115  Identities=13%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             CCCEEEEecCCCCC------cHH---HHHhhhcchhhccccccccE-EEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          120 RLDHILLETTGLAN------PAP---LASVLWLDDQLESAVRLDSI-ITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       120 ~~d~iiidt~G~~~------~~~---~~~~~~~~~~~~~~~~~d~v-i~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                      ..++.||||||+..      +..   ...... ..++   ...+.+ ++|+|+.......+..    .+...+.....+.
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~il~v~d~~~~~~~~~~~----~~~~~~~~~~~~~  195 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFV---TKENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRT  195 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHH-HHHH---TSTTEEEEEEEESSSCGGGCHHH----HHHHHHCTTCSSE
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHH-HHHH---cCCCeEEEEEecCCcchhhhHHH----HHHHHhCCCCCeE
Confidence            36899999999764      221   111111 1122   234434 4789987533211100    0122222234678


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhh-cCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEI-NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~l-np~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ++|+||+|+.+....  .    ...++.. .+         -..++..++.+||++|.|++++.+++.+
T Consensus       196 i~V~NK~Dl~~~~~~--~----~~~~~~~~~~---------~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          196 IGVITKLDLMDEGTD--A----RDVLENKLLP---------LRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             EEEEECGGGSCTTCC--C----HHHHTTCSSC---------CTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             EEEEEccccCCCCch--H----HHHHhCCcCc---------CCCCcEEEECCChhhccccccHHHHHHH
Confidence            999999999875421  1    1222211 01         0012346889999999999999888765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.41  E-value=1.1e-12  Score=109.44  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=64.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||........        ......+|.+++|+|+......... .   .+...+.+.   ..+.++|+||+|
T Consensus        69 ~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~D  136 (213)
T 3cph_A           69 VKLQLWDTAGQERFRTIT--------TAYYRGAMGIILVYDVTDERTFTNI-K---QWFKTVNEHANDEAQLLLVGNKSD  136 (213)
T ss_dssp             EEEEEECCTTGGGGTCCC--------HHHHTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHTTTCSEEEEEEECTT
T ss_pred             EEEEEEeCCCcHHHHHHH--------HHHhccCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECCC
Confidence            457899999954322111        1122467899999999865432111 0   011222222   356799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +....   ..........+..+               ..++.+|++++.|++++..++.+
T Consensus       137 l~~~~---~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  178 (213)
T 3cph_A          137 METRV---VTADQGEALAKELG---------------IPFIESSAKNDDNVNEIFFTLAK  178 (213)
T ss_dssp             CSSCC---SCHHHHHHHHHHHT---------------CCEEECBTTTTBSSHHHHHHHHH
T ss_pred             Ccccc---cCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            95332   12344444444332               14688999999999999888754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.41  E-value=1.4e-13  Score=115.68  Aligned_cols=108  Identities=16%  Similarity=0.103  Sum_probs=62.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||..........        ....+|++++|+|+..........    .+...+.+.   ..+.++|+||+|
T Consensus        61 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D  128 (218)
T 4djt_A           61 IKFNVWDTAGQEKKAVLKDV--------YYIGASGAILFFDVTSRITCQNLA----RWVKEFQAVVGNEAPIVVCANKID  128 (218)
T ss_dssp             EEEEEEEECSGGGTSCCCHH--------HHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCSSSCEEEEEECTT
T ss_pred             EEEEEEecCCchhhchHHHH--------HhhcCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECCC
Confidence            45789999995432211111        124588999999998765432210    011222222   357899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  .........+..               ...++.+||++|.|++++..++.+
T Consensus       129 l~~~~~~--~~~~~~~~~~~~---------------~~~~~~~Sa~~g~gv~~l~~~l~~  171 (218)
T 4djt_A          129 IKNRQKI--SKKLVMEVLKGK---------------NYEYFEISAKTAHNFGLPFLHLAR  171 (218)
T ss_dssp             CC----C--CHHHHHHHTTTC---------------CCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             Ccccccc--CHHHHHHHHHHc---------------CCcEEEEecCCCCCHHHHHHHHHH
Confidence            9865321  222222222211               124788999999999999888754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.41  E-value=2.8e-12  Score=106.98  Aligned_cols=158  Identities=21%  Similarity=0.168  Sum_probs=90.6

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +..-|+|+|.+|+|||||+|+|+.....       ...+.+.+.+....           .+.+.               
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-------~~~~~t~~~~~~~~-----------~~~~~---------------   71 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-------PGQGATIGVDFMIK-----------TVEIN---------------   71 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCC-------TTCCCCCSEEEEEE-----------EEEET---------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCC-------CCCCCccceeEEEE-----------EEEEC---------------
Confidence            3456889999999999999999964210       11111111111000           00000               


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF  187 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~  187 (293)
                             .....+.|+||||......+...        ....+|.+++|+|+......... .   .+...+.+.   ..
T Consensus        72 -------~~~~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~~-~---~~~~~i~~~~~~~~  132 (201)
T 2ew1_A           72 -------GEKVKLQIWDTAGQERFRSITQS--------YYRSANALILTYDITCEESFRCL-P---EWLREIEQYASNKV  132 (201)
T ss_dssp             -------TEEEEEEEEEECCSGGGHHHHGG--------GSTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTC
T ss_pred             -------CEEEEEEEEECCCcHHHHHHHHH--------HHhcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCC
Confidence                   01245789999997544333321        22568899999999865432211 0   011222222   34


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.++|+||+|+.+..+.  .........+..+               ..++.+||++|+|++++..++..
T Consensus       133 piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gv~~l~~~l~~  185 (201)
T 2ew1_A          133 ITVLVGNKIDLAERREV--SQQRAEEFSEAQD---------------MYYLETSAKESDNVEKLFLDLAC  185 (201)
T ss_dssp             EEEEEEECGGGGGGCSS--CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CEEEEEECCCCcccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            67899999999754332  2334443333322               24678999999999999888754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.41  E-value=2.4e-13  Score=113.06  Aligned_cols=108  Identities=12%  Similarity=0.012  Sum_probs=64.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||......    .    .......+|++++|+|+.+........    .+...+.+.   ..+.++|+||+|
T Consensus        74 ~~l~l~Dt~G~~~~~~----~----~~~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D  141 (200)
T 2o52_A           74 VKLQIWDTAGQERFRS----V----TRSYYRGAAGALLVYDITSRETYNSLA----AWLTDARTLASPNIVVILCGNKKD  141 (200)
T ss_dssp             EEEEEECCTTHHHHSC----C----CHHHHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHTCTTCEEEEEEECGG
T ss_pred             eEEEEEcCCCcHhHHH----H----HHHHhccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCC
Confidence            4578999999422111    1    111224678999999998754322110    011112111   456799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ...+.....+..+               ..++.+||++|.|++++..++.+
T Consensus       142 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~SA~~g~gi~~l~~~l~~  184 (200)
T 2o52_A          142 LDPEREV--TFLEASRFAQENE---------------LMFLETSALTGENVEEAFLKCAR  184 (200)
T ss_dssp             GGGGCCS--CHHHHHHHHHHTT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred             ccccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            9754332  2344444444322               24678999999999999888754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.41  E-value=2.5e-12  Score=104.96  Aligned_cols=108  Identities=12%  Similarity=0.000  Sum_probs=66.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.|+||||..........        ....+|.+++|+|+.+........    .+...+.+   -..+.++|+||+|
T Consensus        59 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D  126 (186)
T 2bme_A           59 VKLQIWDTAGQERFRSVTRS--------YYRGAAGALLVYDITSRETYNALT----NWLTDARMLASQNIVIILCGNKKD  126 (186)
T ss_dssp             EEEEEEEECCSGGGHHHHHT--------TSTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred             EEEEEEeCCCcHHHHHHHHH--------HHhcCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence            35789999997654443322        224688999999998754322110    01111122   2346799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ...+.....+..+               ..++.+|+++|+|++++..++.+
T Consensus       127 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  169 (186)
T 2bme_A          127 LDADREV--TFLEASRFAQENE---------------LMFLETSALTGENVEEAFVQCAR  169 (186)
T ss_dssp             GGGGCCS--CHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccc--CHHHHHHHHHHcC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence            9754332  3344444444322               24678999999999999888754

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.41  E-value=4.4e-14  Score=130.75  Aligned_cols=161  Identities=20%  Similarity=0.256  Sum_probs=92.1

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ..+-++|+|..|+|||||+|+|+    +.+.+.+...+|++.......+.             +                
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~----~~~~~~~~~~~gtT~d~~~~~~~-------------~----------------   79 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALV----GQNVSIVSDYAGTTTDPVYKSME-------------L----------------   79 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSC----C-------------CCCCEEEEE-------------E----------------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH----cCCCCccCCCCCeeeeeEEEEEE-------------E----------------
Confidence            45668899999999999999999    55555666666642211111111             0                


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                             .....+.|+||||+.+...+... ...........+|++++|+|+..... ...      +...+.+...+.+
T Consensus        80 -------~~~~~l~liDTpG~~d~~~l~~~-~~~~~~~~l~~aD~vllVvD~~~~~~-~~~------~l~~l~~~~~piI  144 (423)
T 3qq5_A           80 -------HPIGPVTLVDTPGLDDVGELGRL-RVEKARRVFYRADCGILVTDSAPTPY-EDD------VVNLFKEMEIPFV  144 (423)
T ss_dssp             -------TTTEEEEEEECSSTTCCCTTCCC-CHHHHHHHHTSCSEEEEECSSSCCHH-HHH------HHHHHHHTTCCEE
T ss_pred             -------CCCCeEEEEECcCCCcccchhHH-HHHHHHHHHhcCCEEEEEEeCCChHH-HHH------HHHHHHhcCCCEE
Confidence                   01115789999998764332111 01112223356899999999933222 111      3344555578899


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +|+||+|+.++...     +.   .+.+...          .. ..++.+||++|.|++++.+++.+.
T Consensus       145 vV~NK~Dl~~~~~~-----~~---~~~l~~~----------~g-~~v~~vSAktg~gI~eL~~~L~~~  193 (423)
T 3qq5_A          145 VVVNKIDVLGEKAE-----EL---KGLYESR----------YE-AKVLLVSALQKKGFDDIGKTISEI  193 (423)
T ss_dssp             EECCCCTTTTCCCT-----HH---HHHSSCC----------TT-CCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred             EEEeCcCCCCccHH-----HH---HHHHHHH----------cC-CCEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999876531     11   2222111          11 267899999999999999888654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.41  E-value=1.2e-12  Score=108.09  Aligned_cols=108  Identities=17%  Similarity=0.054  Sum_probs=67.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK  195 (293)
                      ..+.|+||||..........+.        ...|.+++|+|+..........    .+...+.++     ..+.++|+||
T Consensus        56 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~~piilv~nK  123 (199)
T 2gf0_A           56 CTLQITDTTGSHQFPAMQRLSI--------SKGHAFILVFSVTSKQSLEELG----PIYKLIVQIKGSVEDIPVMLVGNK  123 (199)
T ss_dssp             EEEEEEECCGGGSCHHHHHHHH--------HHCSEEEEEEETTCHHHHHTTH----HHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred             EEEEEEeCCChHHhHHHHHHhh--------ccCCEEEEEEECcCHHHHHHHH----HHHHHHHHHhcCCCCCCEEEEEEC
Confidence            4578999999766554443221        4578899999998654322110    011222222     3578999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +|+.+...   .........+..+               ..++.+||++|.|++++..++.+.
T Consensus       124 ~Dl~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~  168 (199)
T 2gf0_A          124 CDETQREV---DTREAQAVAQEWK---------------CAFMETSAKMNYNVKELFQELLTL  168 (199)
T ss_dssp             TTCSSCSS---CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccCCcccc---CHHHHHHHHHHhC---------------CeEEEEecCCCCCHHHHHHHHHHH
Confidence            99986432   2334444443332               246789999999999999988653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.41  E-value=2.7e-13  Score=112.60  Aligned_cols=108  Identities=16%  Similarity=0.077  Sum_probs=58.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH------HhccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------IAFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------i~~a~iivlN  194 (293)
                      ..+.|+||||.........        .....+|++++|+|+.+........    .+...+..      ...+.++|+|
T Consensus        73 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n  140 (208)
T 2yc2_C           73 VELFLLDTAGSDLYKEQIS--------QYWNGVYYAILVFDVSSMESFESCK----AWFELLKSARPDRERPLRAVLVAN  140 (208)
T ss_dssp             EEEEEEETTTTHHHHHHHS--------TTCCCCCEEEEEEETTCHHHHHHHH----HHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred             EEEEEEECCCcHHHHHHHH--------HHHhhCcEEEEEEECCCHHHHHHHH----HHHHHHHHhhcccccCCcEEEEEE
Confidence            4578999999754333221        1224678999999998764322110    01222222      2456799999


Q ss_pred             CCCCCC-CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCC-cchhhhhhhhhhh
Q 022736          195 KVDLVS-PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD-ATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~-~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~-~~~~~~l~~~l~~  257 (293)
                      |+|+.+ ..+  ...+++.+..+.++               ..++.+|+++ +.|++++..++.+
T Consensus       141 K~Dl~~~~~~--v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~gi~~l~~~i~~  188 (208)
T 2yc2_C          141 KTDLPPQRHQ--VRLDMAQDWATTNT---------------LDFFDVSANPPGKDADAPFLSIAT  188 (208)
T ss_dssp             CC-------C--CCHHHHHHHHHHTT---------------CEEEECCC-------CHHHHHHHH
T ss_pred             Ccccchhhcc--CCHHHHHHHHHHcC---------------CEEEEeccCCCCcCHHHHHHHHHH
Confidence            999986 332  23455555555443               2467899999 9999999888754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.41  E-value=1.8e-13  Score=112.49  Aligned_cols=108  Identities=17%  Similarity=0.143  Sum_probs=62.9

Q ss_pred             CCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HH---HhccCEEEEeC
Q 022736          121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ---IAFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q---i~~a~iivlNK  195 (293)
                      ..+.|+||||..... .....        ....+|.+++|+|+.+........    .+...+ ..   ...+.++|+||
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK  136 (189)
T 1z06_A           69 IKIQLWDTAGQERFRKSMVQH--------YYRNVHAVVFVYDMTNMASFHSLP----AWIEECKQHLLANDIPRILVGNK  136 (189)
T ss_dssp             EEEEEEECCCSHHHHTTTHHH--------HHTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHCCCSCCCEEEEEEC
T ss_pred             EEEEEEECCCchhhhhhhhHH--------HhcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEEC
Confidence            457899999964322 11111        124678999999998754322110    011111 11   23567999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc---chhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA---THVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~---~~~~~l~~~l~~  257 (293)
                      +|+.+..+.  ..+......+..+               ..++.+|++++   ++++++..++.+
T Consensus       137 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~~~~i~~l~~~l~~  184 (189)
T 1z06_A          137 CDLRSAIQV--PTDLAQKFADTHS---------------MPLFETSAKNPNDNDHVEAIFMTLAH  184 (189)
T ss_dssp             TTCGGGCCS--CHHHHHHHHHHTT---------------CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred             cccccccee--CHHHHHHHHHHcC---------------CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence            999765332  2333333333221               24678999999   888888777753

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.40  E-value=1.1e-12  Score=122.36  Aligned_cols=121  Identities=12%  Similarity=0.152  Sum_probs=65.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh--hcccCCchHHHHHHhcc-CEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~qi~~a-~iivlNK~  196 (293)
                      +..+.|+||||..+....        .......+|.+++|+|+.........  ...-.+.......++.+ .++++||+
T Consensus        94 ~~~~~iiDTPGh~~f~~~--------~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~  165 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPN--------MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM  165 (439)
T ss_pred             CeEEEEEECCChHHHHHH--------HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence            457899999997543222        22334578999999999875321000  00000123344555666 78999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG  253 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~  253 (293)
                      |+.+.+......+.+.+.++.+.....+     .......++++||++|.|++++.+
T Consensus       166 Dl~~~~~~~~~~~~i~~~~~~~l~~~g~-----~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          166 DDPTVNWSNERYEECKEKLVPFLKKVGF-----NPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHhcc-----cccCCeeEEEeeccCCcccccccc
Confidence            9975321111223333333322111000     000013578999999999987543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.40  E-value=8.4e-13  Score=107.60  Aligned_cols=108  Identities=16%  Similarity=0.101  Sum_probs=57.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||.........        .....+|.+++|+|+......... .   .+...+.+.   ..+.++|+||+|
T Consensus        57 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~D  124 (183)
T 2fu5_C           57 IKLQIWDTAGQERFRTITT--------AYYRGAMGIMLVYDITNEKSFDNI-R---NWIRNIEEHASADVEKMILGNKCD  124 (183)
T ss_dssp             EEEEEEEC---------CC--------TTTTTCSEEEEEEETTCHHHHHHH-H---HHHHHHHHHSCTTCEEEEEEEC--
T ss_pred             EEEEEEcCCCChhhhhhHH--------HHHhcCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECcc
Confidence            4578999999654322221        122467899999999875432211 0   011222221   357799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  ..+.+.+..+..+               ..++.+||++|+|++++..++.+
T Consensus       125 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~  167 (183)
T 2fu5_C          125 VNDKRQV--SKERGEKLALDYG---------------IKFMETSAKANINVENAFFTLAR  167 (183)
T ss_dssp             CCSCCCS--CHHHHHHHHHHHT---------------CEEEECCC---CCHHHHHHHHHH
T ss_pred             CCccCcC--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence            9764332  3345555544432               14678999999999999888754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.40  E-value=8.7e-13  Score=108.25  Aligned_cols=159  Identities=13%  Similarity=0.096  Sum_probs=90.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+..-++++|.+|+|||||+|+|...    +..  ...+.  .+.....+.                             
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~----~~~--~~~~t--~~~~~~~~~-----------------------------   62 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLG----DVV--TTVPT--VGVNLETLQ-----------------------------   62 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCS----CCE--EECSS--TTCCEEEEE-----------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcC----CCC--CcCCC--CceEEEEEE-----------------------------
Confidence            34456888999999999999999842    111  11221  111110000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hh
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IA  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~  186 (293)
                              ..+..+.++||||........        ......+|.+++|+|+.+.........   .+......   -.
T Consensus        63 --------~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~  123 (189)
T 2x77_A           63 --------YKNISFEVWDLGGQTGVRPYW--------RCYFSDTDAVIYVVDSTDRDRMGVAKH---ELYALLDEDELRK  123 (189)
T ss_dssp             --------ETTEEEEEEEECCSSSSCCCC--------SSSSTTCCEEEEEEETTCCTTHHHHHH---HHHHHHTCSTTTT
T ss_pred             --------ECCEEEEEEECCCCHhHHHHH--------HHHhhcCCEEEEEEeCCCHHHHHHHHH---HHHHHHhhhhcCC
Confidence                    123467899999975432221        112246899999999976422111000   01111111   24


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .|.++|+||+|+.+...    ..++...+......         ... ..++.+||++++|++++.+++.+.
T Consensus       124 ~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---------~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  181 (189)
T 2x77_A          124 SLLLIFANKQDLPDAAS----EAEIAEQLGVSSIM---------NRT-WTIVKSSSKTGDGLVEGMDWLVER  181 (189)
T ss_dssp             CEEEEEEECTTSTTCCC----HHHHHHHTTGGGCC---------SSC-EEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCcCCCC----HHHHHHHhChhhcc---------CCc-eEEEEccCCCccCHHHHHHHHHHH
Confidence            57899999999987542    34444433211100         011 257889999999999999888653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.40  E-value=8.3e-13  Score=111.66  Aligned_cols=108  Identities=15%  Similarity=0.052  Sum_probs=63.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||||......+..        .....++.+|+|+|+..........    .+...+.+.   ..+.++|+||+|
T Consensus        62 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~vilV~D~~~~~s~~~~~----~~l~~i~~~~~~~~piilv~nK~D  129 (223)
T 3cpj_B           62 IKAQIWDTAGQERYRAITS--------AYYRGAVGALIVYDISKSSSYENCN----HWLSELRENADDNVAVGLIGNKSD  129 (223)
T ss_dssp             EEEEEECCTTTTTTTCCCG--------GGTTTCCEEEEEEC-CCHHHHHHHH----HHHHHHHHHCC--CEEEEEECCGG
T ss_pred             EEEEEEECCCccchhhhHH--------HHhccCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECcc
Confidence            4578999999654322211        1224678899999998754332210    012222222   456799999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..+.  .........+..+               ..++.+||++++|++++..++.+
T Consensus       130 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  172 (223)
T 3cpj_B          130 LAHLRAV--PTEESKTFAQENQ---------------LLFTETSALNSENVDKAFEELIN  172 (223)
T ss_dssp             GGGGCCS--CHHHHHHHHHHTT---------------CEEEECCCC-CCCHHHHHHHHHH
T ss_pred             ccccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            9764332  2344444444322               24678999999999999888754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.40  E-value=3.9e-13  Score=117.66  Aligned_cols=87  Identities=16%  Similarity=0.268  Sum_probs=41.2

Q ss_pred             cccccEEEEEcccc-hHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeec
Q 022736          151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR  229 (293)
Q Consensus       151 ~~~d~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~  229 (293)
                      .++|.+++++++.. .....+..     +...+.. ..+.++|+||+|+++..+......++.+.++..+          
T Consensus       114 ~r~~~~l~~i~~~~~~~~~~d~~-----~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~----------  177 (274)
T 3t5d_A          114 NRVQCCLYFIAPSGHGLKPLDIE-----FMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK----------  177 (274)
T ss_dssp             CCCCEEEEEECSCCSSCCHHHHH-----HHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTT----------
T ss_pred             CceeEEEEEecCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcC----------
Confidence            34678888887654 22222211     1222232 5789999999999875432111222333332211          


Q ss_pred             CCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          230 CQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       230 ~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                           ..++.+|+.++++++++..++.+.
T Consensus       178 -----i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          178 -----IKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             -----CCCCCC-----------CHHHHHT
T ss_pred             -----CeEEcCCCCCChhHHHHHHHHhcC
Confidence                 246788999999999998888764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.39  E-value=4.3e-13  Score=111.95  Aligned_cols=112  Identities=13%  Similarity=0.068  Sum_probs=66.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||.........        .....+|++++|+|+...........   .+...+.+.  ..+.++|+||+|+
T Consensus        78 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl  146 (204)
T 4gzl_A           78 VNLGLWDTAGLEDYDRLRP--------LSYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL  146 (204)
T ss_dssp             EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSCCEEEEEECHHH
T ss_pred             EEEEEEECCCchhhHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEechhh
Confidence            3466999999754322221        12356899999999987654332110   123333333  5678999999999


Q ss_pred             CCCCCCc----------chHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSG----------DSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~----------~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+.....          ....+.....+.+              ....++.+||++|+|++++..++.+
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~SA~~g~gi~~l~~~l~~  201 (204)
T 4gzl_A          147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIR  201 (204)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccchhhhhhhhccccccccHHHHHHHHHhc--------------CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence            8653100          0111111122211              1234788999999999999888754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.39  E-value=3.8e-12  Score=105.78  Aligned_cols=112  Identities=16%  Similarity=0.133  Sum_probs=65.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||.........        .....+|.+++|+|............   .+...+.+.  ..+.++|+||+|+
T Consensus        73 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl  141 (201)
T 2gco_A           73 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL  141 (201)
T ss_dssp             EEEEEECCCCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECGGG
T ss_pred             EEEEEEECCCchhHHHHHH--------HhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEecHHh
Confidence            4578999999643322211        12246789999999886543222100   122333333  5678999999999


Q ss_pred             CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+....          ....++..+..+.+              ....++.+||++|+|++++..++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~SA~~g~gi~~l~~~i~~  196 (201)
T 2gco_A          142 RQDEHTRRELAKMKQEPVRSEEGRDMANRI--------------SAFGYLECSAKTKEGVREVFEMATR  196 (201)
T ss_dssp             TTCHHHHHHHHTTTCCCCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hcCccchhhhcccccCcCCHHHHHHHHHhC--------------CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence            865210          00111112222211              1125788999999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=108.33  Aligned_cols=106  Identities=12%  Similarity=0.081  Sum_probs=65.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl  193 (293)
                      ..+.++||+|..........    .+   ....+++++|+|..+......       ...++.++       ..|.++|.
T Consensus        72 ~~l~i~Dt~g~~~~~~~~~~----~~---~~~~d~~ilv~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~piilv~  137 (195)
T 3cbq_A           72 VTLVVYDIWEQGDAGGWLRD----HC---LQTGDAFLIVFSVTDRRSFSK-------VPETLLRLRAGRPHHDLPVILVG  137 (195)
T ss_dssp             EEEEEECCCCCSGGGHHHHH----HH---HHHCSEEEEEEETTCHHHHHT-------HHHHHHHHHHHSTTSCCCEEEEE
T ss_pred             EEEEEEecCCCccchhhhHH----Hh---hccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCCCEEEEe
Confidence            45678999998654332211    11   135788999999986543221       12222222       45789999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ||+|+.+....  ..+......+..+               ..++.+||+++.|++++..++..
T Consensus       138 nK~Dl~~~~~v--~~~~~~~~a~~~~---------------~~~~e~Sa~~~~~v~~lf~~l~~  184 (195)
T 3cbq_A          138 NKSDLARSREV--SLEEGRHLAGTLS---------------CKHIETSAALHHNTRELFEGAVR  184 (195)
T ss_dssp             ECTTCTTTCCS--CHHHHHHHHHHTT---------------CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             echhccccCCc--CHHHHHHHHHHhC---------------CEEEEEcCCCCCCHHHHHHHHHH
Confidence            99999764432  3344444443322               13578999999999999888754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.39  E-value=1.3e-12  Score=109.77  Aligned_cols=106  Identities=14%  Similarity=0.074  Sum_probs=66.4

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-------HhccCEEE
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVI  192 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------i~~a~iiv  192 (293)
                      ...+.|+||||.........        .....+|.+++|+|+........       ...++.+       -..+.++|
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~--------~~~~~~d~iilV~D~~~~~s~~~-------~~~~l~~i~~~~~~~~~piilV  147 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTT--------AFFRDAMGFLLMFDLTSQQSFLN-------VRNWMSQLQANAYCENPDIVLI  147 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHH--------HHHTTCCEEEEEEETTCHHHHHH-------HHHHHHTCCCCCTTTCCEEEEE
T ss_pred             eEEEEEEECCCcHhHHhHHH--------HHhcCCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCcCCCCEEEE
Confidence            35688999999543222221        12246789999999987543221       1122222       23567999


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +||+|+.+..+.  ....+....+..+               ..++.+|+++++|++++..++.+
T Consensus       148 ~NK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~  195 (217)
T 2f7s_A          148 GNKADLPDQREV--NERQARELADKYG---------------IPYFETSAATGQNVEKAVETLLD  195 (217)
T ss_dssp             EECTTCGGGCCS--CHHHHHHHHHHTT---------------CCEEEEBTTTTBTHHHHHHHHHH
T ss_pred             EECCcccccccc--CHHHHHHHHHHCC---------------CcEEEEECCCCCCHHHHHHHHHH
Confidence            999999764332  2344444444332               24678999999999999888754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.39  E-value=1.8e-13  Score=115.51  Aligned_cols=153  Identities=16%  Similarity=0.103  Sum_probs=88.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ..-|+++|.+|+|||||+|+++..   ..........|.    +......           ...                
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~~~~---~~~~~~~~t~~~----~~~~~~~-----------~~~----------------   60 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRHLTG---EFEKKYVATLGV----EVHPLVF-----------HTN----------------   60 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTBHHH---HHTCEEETTTTE----EEEEEEE-----------EET----------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCccce----eEEEEEE-----------EEC----------------
Confidence            345788999999999999996642   111223334432    1111100           000                


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----h
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----A  186 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~  186 (293)
                            .....+.|+||||......+..        .....++++++|+|+.........       ..++..+     .
T Consensus        61 ------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~-------~~~~~~~~~~~~~  119 (221)
T 3gj0_A           61 ------RGPIKFNVWDTAGQEKFGGLRD--------GYYIQAQCAIIMFDVTSRVTYKNV-------PNWHRDLVRVCEN  119 (221)
T ss_dssp             ------TEEEEEEEEEECSGGGTSCCCH--------HHHTTCCEEEEEEETTCHHHHHTH-------HHHHHHHHHHSTT
T ss_pred             ------CEEEEEEEEeCCChHHHhHHHH--------HHHhcCCEEEEEEECCCHHHHHHH-------HHHHHHHHHhCCC
Confidence                  1234578999999533211111        112368899999999875443221       1222222     4


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+.++|+||+|+.+....    .......+..+               ..++.+|+++|.|++++..++.+.
T Consensus       120 ~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~  172 (221)
T 3gj0_A          120 IPIVLCGNKVDIKDRKVK----AKSIVFHRKKN---------------LQYYDISAKSNYNFEKPFLWLARK  172 (221)
T ss_dssp             CCEEEEEECTTSSSCSSC----GGGCCHHHHHT---------------CEEEECBGGGTBTTTHHHHHHHHH
T ss_pred             CCEEEEEECCcccccccc----HHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHHH
Confidence            578999999999765421    11111222211               246789999999999999888653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.39  E-value=1.7e-12  Score=108.34  Aligned_cols=118  Identities=16%  Similarity=0.192  Sum_probs=66.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||..+......        .....+|.+++|+|............   .+...+.+.  ..+.++|+||+|+
T Consensus        73 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl  141 (207)
T 2fv8_A           73 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSVDSPDSLENIPE---KWVPEVKHFCPNVPIILVANKKDL  141 (207)
T ss_dssp             EEEEEEECTTCTTCTTTGG--------GGCTTCCEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECGGG
T ss_pred             EEEEEEECCCcHHHHHHHH--------hhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEchhh
Confidence            4578999999765432221        12246789999999986543221100   122233333  5678999999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEee-----cCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSV-----RCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~-----~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+..       .....+..+....  +...     ........++.+||++|.|++++..++.+.
T Consensus       142 ~~~~-------~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~  197 (207)
T 2fv8_A          142 RSDE-------HVRTELARMKQEP--VRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA  197 (207)
T ss_dssp             GGCH-------HHHHHHHHTTCCC--CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hccc-------cchhhhhhcccCC--CCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence            7642       1112222211100  0000     000111257889999999999999988654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.39  E-value=1.4e-12  Score=106.78  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=67.0

Q ss_pred             CEEEEecCCCCCcH-------HHHHhhhcchhhcc-ccccccEEEEEcccchHHHHhhhcc--cCC----chHHHHHHhc
Q 022736          122 DHILLETTGLANPA-------PLASVLWLDDQLES-AVRLDSIITVVDAKNLLFQIDKYRH--LSS----YPEAIHQIAF  187 (293)
Q Consensus       122 d~iiidt~G~~~~~-------~~~~~~~~~~~~~~-~~~~d~vi~vvDa~~~~~~~~~~~~--~~~----~~~~~~qi~~  187 (293)
                      ++.++||||+....       ....... ..++.. ...++.++.++|+..+.........  ...    ..........
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEI-VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI  123 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHH-HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHH-HHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCC
Confidence            57899999964321       1111111 122232 4456788999999876543111100  000    1112223357


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |.++|+||+|+.+..     ...+....+.++-.       .... ...++.+||++|+|++++..++.+.
T Consensus       124 piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~-------~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~  181 (190)
T 2cxx_A          124 PTIVAVNKLDKIKNV-----QEVINFLAEKFEVP-------LSEI-DKVFIPISAKFGDNIERLKNRIFEV  181 (190)
T ss_dssp             CEEEEEECGGGCSCH-----HHHHHHHHHHHTCC-------GGGH-HHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ceEEEeehHhccCcH-----HHHHHHHHHHhhhh-------hhcc-CCcEEEEecCCCCCHHHHHHHHHHh
Confidence            889999999998642     12233333333210       0000 1356899999999999999888653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.39  E-value=4.4e-13  Score=109.29  Aligned_cols=106  Identities=16%  Similarity=0.118  Sum_probs=65.1

Q ss_pred             EEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HH---HhccCEEEEeCCCC
Q 022736          123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ---IAFADVVILNKVDL  198 (293)
Q Consensus       123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q---i~~a~iivlNK~D~  198 (293)
                      +.|+||||..........        ....+|.+++|+|..+........    .+...+ ..   ...+.++|+||+|+
T Consensus        68 l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~ilv~nK~Dl  135 (183)
T 3kkq_A           68 LDVLDTAGQEEFSAMREQ--------YMRTGDGFLIVYSVTDKASFEHVD----RFHQLILRVKDRESFPMILVANKVDL  135 (183)
T ss_dssp             EEEEECCSCGGGCSSHHH--------HHHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred             EEEEECCCchhhHHHHHH--------HHhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECCCc
Confidence            557999996543222221        124578999999998754321110    011111 11   23467999999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC-Ccchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY-DATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~-~~~~~~~l~~~l~~  257 (293)
                      .+..+  ...+...+..+..+               ..++.+|++ +++|++++..++.+
T Consensus       136 ~~~~~--v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~~v~~l~~~l~~  178 (183)
T 3kkq_A          136 MHLRK--VTRDQGKEMATKYN---------------IPYIETSAKDPPLNVDKTFHDLVR  178 (183)
T ss_dssp             STTCC--SCHHHHHHHHHHHT---------------CCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred             hhccC--cCHHHHHHHHHHhC---------------CeEEEeccCCCCCCHHHHHHHHHH
Confidence            76443  23455555555443               236789999 99999999888754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.38  E-value=2.3e-12  Score=104.65  Aligned_cols=113  Identities=13%  Similarity=0.060  Sum_probs=64.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||.........        .....+|.+++|+|+.+.........   .+...+.+.  ..+.++|+||+|+
T Consensus        56 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl  124 (182)
T 3bwd_D           56 VNLGLWDTAGQEDYNRLRP--------LSYRGADVFILAFSLISKASYENVSK---KWIPELKHYAPGVPIVLVGTKLDL  124 (182)
T ss_dssp             --CEEECCCC-CTTTTTGG--------GGGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCCEEEEEECHHH
T ss_pred             EEEEEEECCCChhhhhhHH--------hhccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEechhh
Confidence            4567999999754332221        12245789999999976543222100   122222222  4678999999998


Q ss_pred             CCCCCC--------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERS--------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~--------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+..+.        .....+.....+.++              ...++.+||++|+|++++..++.+.
T Consensus       125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~~~  178 (182)
T 3bwd_D          125 RDDKQFFIDHPGAVPITTVQGEELKKLIG--------------APAYIECSSKSQENVKGVFDAAIRV  178 (182)
T ss_dssp             HTCHHHHHHC--CCCCCHHHHHHHHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hcCcccccccccCCCCCHHHHHHHHHHcC--------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            764310        001223333333332              1246789999999999999888653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.38  E-value=5.5e-13  Score=110.27  Aligned_cols=107  Identities=17%  Similarity=0.135  Sum_probs=66.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~  196 (293)
                      ..+.|+||||... ......+        ....|.+++|+|+.+....... .   .+...+.+    -..|.++|+||+
T Consensus        76 ~~~~l~Dt~G~~~-~~~~~~~--------~~~~d~iilv~D~~~~~s~~~~-~---~~~~~i~~~~~~~~~piilv~NK~  142 (196)
T 2atv_A           76 VSMEILDTAGQED-TIQREGH--------MRWGEGFVLVYDITDRGSFEEV-L---PLKNILDEIKKPKNVTLILVGNKA  142 (196)
T ss_dssp             EEEEEEECCCCCC-CHHHHHH--------HHHCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHHTTSCCCEEEEEECG
T ss_pred             EEEEEEECCCCCc-ccchhhh--------hccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhhCCCCCcEEEEEECc
Confidence            4578999999876 2222221        2457889999999875432111 0   01111211    235689999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc-hhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~-~~~~l~~~l~~  257 (293)
                      |+.+..+.  .........+..+               ..++.+|+++|+ |++++..++.+
T Consensus       143 Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~~gi~~l~~~l~~  187 (196)
T 2atv_A          143 DLDHSRQV--STEEGEKLATELA---------------CAFYECSACTGEGNITEIFYELCR  187 (196)
T ss_dssp             GGGGGCCS--CHHHHHHHHHHHT---------------SEEEECCTTTCTTCHHHHHHHHHH
T ss_pred             cccccccc--CHHHHHHHHHHhC---------------CeEEEECCCcCCcCHHHHHHHHHH
Confidence            99764322  3344444444332               246789999999 99999888754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.37  E-value=1.1e-12  Score=106.37  Aligned_cols=106  Identities=8%  Similarity=-0.001  Sum_probs=65.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN  194 (293)
                      ..+.|+||||...+.             ....+|++++|+|..+........    .+..++..+      ..|.++|.|
T Consensus        54 ~~l~i~Dt~G~~~~~-------------~~~~~d~~ilv~D~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n  116 (178)
T 2iwr_A           54 HLVLIREEAGAPDAK-------------FSGWADAVIFVFSLEDENSFQAVS----RLHGQLSSLRGEGRGGLALALVGT  116 (178)
T ss_dssp             EEEEEEECSSSCCHH-------------HHHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCSSSCCCEEEEEEE
T ss_pred             EEEEEEECCCCchhH-------------HHHhCCEEEEEEECcCHHHHHHHH----HHHHHHHHHHhcCCCCCCEEEEEE
Confidence            356789999976521             113478899999998764332210    012223333      346799999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+|+.+...+....+.+.+..+..+.              ..++.+||++|+|++++..++..
T Consensus       117 K~Dl~~~~~~~v~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~lf~~l~~  165 (178)
T 2iwr_A          117 QDRISASSPRVVGDARARALXADMKR--------------CSYYETXATYGLNVDRVFQEVAQ  165 (178)
T ss_dssp             CTTCBTTBCCCSCHHHHHHHHHHHSS--------------EEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             CccccccccCcCCHHHHHHHHHhhcC--------------CeEEEEeccccCCHHHHHHHHHH
Confidence            99995322221234455554444321              24678999999999999887754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.37  E-value=1.1e-11  Score=116.86  Aligned_cols=200  Identities=16%  Similarity=0.115  Sum_probs=107.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      .+..+|+|+|.+||||||++++|+..  ..|++++++..|+.....++......        ..  ..-.++.+....+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~--------~~--~~i~v~~~~~~~dp  168 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA--------TK--ARIPFYGSYTEMDP  168 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHH--------HH--HTCCEEECCCCSCH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHh--------hc--cCceEEccCCCCCH
Confidence            45778999999999999999999863  34889999999875311111000000        00  00001111111122


Q ss_pred             H----HHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736          108 V----QALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI  182 (293)
Q Consensus       108 ~----~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~  182 (293)
                      .    .++..+.  ..++|++||||||..... .+...+.  . .......|.+++|+|+........       ....+
T Consensus       169 ~~i~~~al~~~~--~~~~DvvIIDTpG~~~~~~~l~~el~--~-~~~~i~pd~vllVvDa~~g~~~~~-------~a~~~  236 (504)
T 2j37_W          169 VIIASEGVEKFK--NENFEIIIVDTSGRHKQEDSLFEEML--Q-VANAIQPDNIVYVMDASIGQACEA-------QAKAF  236 (504)
T ss_dssp             HHHHHHHHHHHH--HTTCCEEEEEECCCCTTCHHHHHHHH--H-HHHHHCCSEEEEEEETTCCTTHHH-------HHHHH
T ss_pred             HHHHHHHHHHHH--HCCCcEEEEeCCCCcccchhHHHHHH--H-HHhhhcCceEEEEEeccccccHHH-------HHHHH
Confidence            2    2233221  267899999999976532 2332211  0 111236788999999986533211       11222


Q ss_pred             HHHhcc-CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecC---CCCchhhcccccCCcch-hhhhhhhhhh
Q 022736          183 HQIAFA-DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC---QVDLSEVLNCRAYDATH-VTRLEGLLEE  257 (293)
Q Consensus       183 ~qi~~a-~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~---~~~~~~i~~~sa~~~~~-~~~l~~~l~~  257 (293)
                      .+. .+ +.+|+||+|......      ........+......+.....   ..++.+.+.+|+..|.| +..|.+++.+
T Consensus       237 ~~~-~~i~gvVlNK~D~~~~~g------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e  309 (504)
T 2j37_W          237 KDK-VDVASVIVTKLDGHAKGG------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE  309 (504)
T ss_dssp             HHH-HCCCCEEEECTTSCCCCT------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred             Hhh-cCceEEEEeCCccccchH------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence            221 45 699999999875432      112222233211111221111   11345566789999998 8888888865


Q ss_pred             h
Q 022736          258 H  258 (293)
Q Consensus       258 ~  258 (293)
                      .
T Consensus       310 ~  310 (504)
T 2j37_W          310 L  310 (504)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.36  E-value=1.7e-12  Score=105.73  Aligned_cols=114  Identities=12%  Similarity=0.044  Sum_probs=66.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||.........        .....+|.+++|+|+.+.........   .+...+.+.  ..+.++|+||+|+
T Consensus        53 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl  121 (186)
T 1mh1_A           53 VNLGLWDTAGQEDYDRLRP--------LSYPQTDVSLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL  121 (186)
T ss_dssp             EEEEEECCCCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTSCEEEEEECHHH
T ss_pred             EEEEEEECCCCHhHHHHHH--------HhccCCcEEEEEEECCChhhHHHHHH---HHHHHHHHhCCCCCEEEEeEcccc
Confidence            4567999999754322221        12246789999999987543322100   122223332  5678999999999


Q ss_pred             CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      .+....          ...........+..              ....++.+||++|+|++++..++.+..
T Consensus       122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~  178 (186)
T 1mh1_A          122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIRAV  178 (186)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccchhhhhhcccccccCCHHHHHHHHHhc--------------CCcEEEEecCCCccCHHHHHHHHHHHH
Confidence            764210          00111222222211              113578899999999999998886543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.36  E-value=5.1e-12  Score=104.04  Aligned_cols=113  Identities=13%  Similarity=0.077  Sum_probs=67.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||..........        ....+|.+++|+|+.+.........   .+...+.+.  ..+.++|+||+|+
T Consensus        66 ~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl  134 (194)
T 2atx_A           66 YLLGLYDTAGQEDYDRLRPL--------SYPMTDVFLICFSVVNPASFQNVKE---EWVPELKEYAPNVPFLLIGTQIDL  134 (194)
T ss_dssp             EEEEEECCCCSSSSTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECTTS
T ss_pred             EEEEEEECCCCcchhHHHHH--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence            45789999997654332221        2246789999999987543222100   122233333  5678999999999


Q ss_pred             CCCCC----------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~----------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+...          +....++.....+.++              ...++.+||++|+|++++..++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~~  190 (194)
T 2atx_A          135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIG--------------ACCYVECSALTQKGLKTVFDEAIIA  190 (194)
T ss_dssp             TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT--------------CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cccccchhhcccccCcccCHHHHHHHHHHcC--------------CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            86420          0012233333333322              1256889999999999999887643

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.35  E-value=6.9e-12  Score=119.29  Aligned_cols=70  Identities=20%  Similarity=0.103  Sum_probs=46.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +..+.||||||..+.....        ......+|.+|+|+|+..........     ..........|.++++||+|+.
T Consensus        81 ~~~i~liDTPG~~df~~~~--------~~~l~~aD~allVvDa~~g~~~~t~~-----~~~~~~~~~iPiivviNK~Dl~  147 (528)
T 3tr5_A           81 DYLINLLDTPGHADFTEDT--------YRTLTAVDSALMVIDAAKGVEPRTIK-----LMEVCRLRHTPIMTFINKMDRD  147 (528)
T ss_dssp             TEEEEEECCCCSTTCCHHH--------HHGGGGCSEEEEEEETTTCSCHHHHH-----HHHHHHTTTCCEEEEEECTTSC
T ss_pred             CEEEEEEECCCchhHHHHH--------HHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEeCCCCc
Confidence            4568999999987643332        23345789999999998643322211     1223344467899999999997


Q ss_pred             CCC
Q 022736          200 SPE  202 (293)
Q Consensus       200 ~~~  202 (293)
                      ...
T Consensus       148 ~~~  150 (528)
T 3tr5_A          148 TRP  150 (528)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.35  E-value=1.7e-13  Score=121.95  Aligned_cols=118  Identities=13%  Similarity=0.148  Sum_probs=61.5

Q ss_pred             CCCEEEEecCCCCCcH------HHHHhhhcchhhccccccccEEEEEcccc-hHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736          120 RLDHILLETTGLANPA------PLASVLWLDDQLESAVRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVI  192 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~------~~~~~~~~~~~~~~~~~~d~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~qi~~a~iiv  192 (293)
                      ..+++||||||+....      .+.. .+..........+|.+++|+|+.+ .....+.    ......+.....+.++|
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~----~~i~~~~~~~~~~~i~v  204 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQ-QIRRMVMAYIKKQNAIIVAVTPANTDLANSDA----LQLAKEVDPEGKRTIGV  204 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHH-HHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH----HHHHHHHCSSCSSEEEE
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHH-HHHHHHHHHHcCCCeEEEEEEecCcchhhhHH----HHHHHHhCCCCCcEEEE
Confidence            4689999999986521      1111 111122333457888999999742 1110000    00122233335688999


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHh-hcCCCEEEEeecCCCCchhhcccccCC---cchhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHE-INSLAHVIRSVRCQVDLSEVLNCRAYD---ATHVTRLEGLLEE  257 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~-lnp~a~i~~~~~~~~~~~~i~~~sa~~---~~~~~~l~~~l~~  257 (293)
                      +||+|+.+..+  ...+    .++. +.+         ...++.++.++|+.+   +.|+.++.+.+.+
T Consensus       205 ~NK~Dl~~~~~--~~~~----~~~~~~~~---------~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~  258 (315)
T 1jwy_B          205 ITKLDLMDKGT--DAME----VLTGRVIP---------LTLGFIGVINRSQEDIIAKKSIRESLKSEIL  258 (315)
T ss_dssp             EECTTSSCSSC--CCHH----HHTTSSSC---------CTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred             EcCcccCCcch--HHHH----HHhCCCcc---------CCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence            99999987543  1122    2221 111         012334566677776   6777777766544

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.35  E-value=4e-12  Score=104.32  Aligned_cols=106  Identities=10%  Similarity=0.049  Sum_probs=65.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~  196 (293)
                      ..+.|+||+|.....             .....+++++|+|..+........    .+...+.+    ...+.++|.||+
T Consensus        67 ~~l~i~Dt~G~~~~~-------------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~  129 (184)
T 3ihw_A           67 YLLLIRDEGGPPELQ-------------FAAWVDAVVFVFSLEDEISFQTVY----NYFLRLCSFRNASEVPMVLVGTQD  129 (184)
T ss_dssp             EEEEEEECSSSCCHH-------------HHHHCSEEEEEEETTCHHHHHHHH----HHHHHHHTTSCGGGSCEEEEEECT
T ss_pred             EEEEEEECCCChhhh-------------eecCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEECc
Confidence            346789999976543             113478899999998754332210    01111211    245779999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+........+.+.+..+.++.              ..++.+||++|.|++++..++.+
T Consensus       130 Dl~~~~~~~v~~~~~~~~~~~~~~--------------~~~~e~Sa~~~~gv~~lf~~l~~  176 (184)
T 3ihw_A          130 AISAANPRVIDDSRARKLSTDLKR--------------CTYYETCATYGLNVERVFQDVAQ  176 (184)
T ss_dssp             TCBTTBCCCSCHHHHHHHHHHTTT--------------CEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             ccccccccccCHHHHHHHHHHcCC--------------CeEEEecCCCCCCHHHHHHHHHH
Confidence            996433222344555555554421              24578999999999999888754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.34  E-value=6.2e-12  Score=104.15  Aligned_cols=112  Identities=11%  Similarity=0.052  Sum_probs=65.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||......+...        ....+|++++|+|+.+.........   .+...+.+.  ..+.++|+||+|+
T Consensus        68 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl  136 (201)
T 2q3h_A           68 VRLQLCDTAGQDEFDKLRPL--------CYTNTDIFLLCFSVVSPSSFQNVSE---KWVPEIRCHCPKAPIILVGTQSDL  136 (201)
T ss_dssp             EEEEEEECCCSTTCSSSGGG--------GGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSSCEEEEEECGGG
T ss_pred             EEEEEEECCCCHHHHHHhHh--------hcCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEECHhh
Confidence            34679999997654322211        2246789999999987544322100   022222222  4578999999999


Q ss_pred             CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+..          ......+......+.++              ...++.+||++|+|++++..++.+
T Consensus       137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~  191 (201)
T 2q3h_A          137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIK--------------AASYIECSALTQKNLKEVFDAAIV  191 (201)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hhchhhhhhhcccccccCCHHHHHHHHHhcC--------------CcEEEEEecCCCCCHHHHHHHHHH
Confidence            7531          00012233333333322              124688999999999999888754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.34  E-value=2.4e-12  Score=108.16  Aligned_cols=196  Identities=13%  Similarity=0.079  Sum_probs=93.6

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ..+.+-++++|.+|+|||||+++|+......  .+....++  ...+                                 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~--~~~~~~~~--~~~~---------------------------------   51 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPL--SAAD---------------------------------   51 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCC--BCCCSSCE--EETT---------------------------------
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--eeeecCce--EEEE---------------------------------
Confidence            3456789999999999999999999642110  00011111  0000                                 


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc-ch--HHHHhhhcccCCchHHHHH-
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NL--LFQIDKYRHLSSYPEAIHQ-  184 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~-~~--~~~~~~~~~~~~~~~~~~q-  184 (293)
                               ....++.++||||..........+.    ......++++++|+|+. ..  .......     +...+.. 
T Consensus        52 ---------~~~~~~~l~Dt~G~~~~~~~~~~~~----~~~~~~~~~~i~v~D~~~~~~~~~~~~~~-----~~~~~~~~  113 (218)
T 1nrj_B           52 ---------YDGSGVTLVDFPGHVKLRYKLSDYL----KTRAKFVKGLIFMVDSTVDPKKLTTTAEF-----LVDILSIT  113 (218)
T ss_dssp             ---------GGGSSCEEEECCCCGGGTHHHHHHH----HHHGGGEEEEEEEEETTSCTTCCHHHHHH-----HHHHHHHH
T ss_pred             ---------eeCceEEEEECCCcHHHHHHHHHHH----HhccccCCEEEEEEECCCChHHHHHHHHH-----HHHHHhcc
Confidence                     0224678999999876544443322    11113368899999997 21  1111110     1122221 


Q ss_pred             -----HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchh--hhhhhhhhh
Q 022736          185 -----IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHV--TRLEGLLEE  257 (293)
Q Consensus       185 -----i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~--~~l~~~l~~  257 (293)
                           -..|.++|+||+|+.+..........+...++.+...           ....++.+|++++.+.  ..+..+++.
T Consensus       114 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~Sa~~~~~~~~~~~~~~l~~  182 (218)
T 1nrj_B          114 ESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER-----------RKKSLNEVERKINEEDYAENTLDVLQS  182 (218)
T ss_dssp             HHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHC--------------CTTC--
T ss_pred             cccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH-----------HhccccccccccccccchhhhcccccC
Confidence                 1456899999999987654212222233333322110           1146788999988653  333344443


Q ss_pred             hccCCCCCCCCCCEEEEEEecCCCCCHHHHHHhhh
Q 022736          258 HQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA  292 (293)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  292 (293)
                      ...+... .....+..+. .+..|-..+++.+|+.
T Consensus       183 ~~~f~~~-~~~~~v~~~~-~s~~~~~i~~~~~~~~  215 (218)
T 1nrj_B          183 TDGFKFA-NLEASVVAFE-GSINKRKISQWREWID  215 (218)
T ss_dssp             --CCCGG-GSSSCEEEEE-CBTTTTBCHHHHHHHH
T ss_pred             CCCcccc-ccCCceEEEe-ccccCCcHHHHHHHHH
Confidence            2222111 1123355444 3344556778888874

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.33  E-value=5.6e-12  Score=105.91  Aligned_cols=112  Identities=12%  Similarity=0.084  Sum_probs=58.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||..........        ....+|++++|+|+.+.........   .+...+.+.  ..+.++|+||+|+
T Consensus        82 ~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl  150 (214)
T 2j1l_A           82 VHLHIWDTAGQDDYDRLRPL--------FYPDASVLLLCFDVTSPNSFDNIFN---RWYPEVNHFCKKVPIIVVGCKTDL  150 (214)
T ss_dssp             EEEEEEEC-----------------------CEEEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSCCEEEEEECGGG
T ss_pred             EEEEEEECCCchhhhHHHHH--------HhccCCEEEEEEECcCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence            35789999996554333321        1246788999999987543322100   122222222  4578999999999


Q ss_pred             CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+....          .....+.....+.+              ....++.+||++|.|++++..++.+
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~SA~~g~gi~el~~~l~~  205 (214)
T 2j1l_A          151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSV--------------GAVAYLECSARLHDNVHAVFQEAAE  205 (214)
T ss_dssp             GSCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------------TCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             hccchhhhhhcccccCcccHHHHHHHHHhc--------------CCCEEEEecCCCCCCHHHHHHHHHH
Confidence            864310          00112222222222              1135788999999999999888754

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.33  E-value=3.4e-12  Score=114.66  Aligned_cols=155  Identities=15%  Similarity=0.095  Sum_probs=86.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .-|+|+|.+|+|||||+++|+..    ++.  ...+  +.+.+...+.                                
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~~~----~~~--~~~p--T~~~~~~~~~--------------------------------  205 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLKLG----EIV--TTIP--TIGFNVETVE--------------------------------  205 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTCSS----CCE--EEEE--ETTEEEEEEE--------------------------------
T ss_pred             ceEEEECCCCccHHHHHHHHhCC----CCC--Cccc--ccceEEEEEe--------------------------------
Confidence            35788999999999999999853    211  1111  1222211111                                


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccC
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFAD  189 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~  189 (293)
                           ..+..+.|+||||......+...        ....+|.+|+|+|+...........   .+...+...   ..+.
T Consensus       206 -----~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~vilV~D~~~~~s~~~~~~---~~~~~~~~~~~~~~pi  269 (329)
T 3o47_A          206 -----YKNISFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVL  269 (329)
T ss_dssp             -----ETTEEEEEEECC-----CCSHHH--------HHTTEEEEEEEEETTCSSSHHHHHH---HHHHHHTCGGGTTCEE
T ss_pred             -----cCcEEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCchHHHHHHHH---HHHHHHhhhccCCCeE
Confidence                 12346789999995432222211        1245788999999965322111000   011122211   4567


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ++|+||+|+.+...    ..++...+......          .....++.+||++|.|++++..++.+
T Consensus       270 ilV~NK~Dl~~~~~----~~~i~~~~~~~~~~----------~~~~~~~~vSAk~g~gi~el~~~l~~  323 (329)
T 3o47_A          270 LVFANKQDLPNAMN----AAEITDKLGLHSLR----------HRNWYIQATCATSGDGLYEGLDWLSN  323 (329)
T ss_dssp             EEEEECTTSTTCCC----HHHHHHHHTCTTCC----------SSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             EEEEECccCCcccC----HHHHHHHhchhhhh----------cCCCEEEEEECCCCcCHHHHHHHHHH
Confidence            99999999987542    34555544322111          01135788999999999999988764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.33  E-value=5.7e-12  Score=116.44  Aligned_cols=112  Identities=15%  Similarity=0.248  Sum_probs=65.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D  197 (293)
                      ..+.|+||||..+   +.     .........+|.+++|+|+....  .+...      ....+..+.. +.++++||+|
T Consensus        81 ~~i~iiDtPGh~~---f~-----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e------~l~~~~~l~~~~iivv~NK~D  146 (408)
T 1s0u_A           81 RRVSFVDSPGHET---LM-----ATMLSGASLMDGAILVIAANEPCPQPQTKE------HLMALEILGIDKIIIVQNKID  146 (408)
T ss_dssp             EEEEEEECSSHHH---HH-----HHHHTTCSCCSEEEEEEETTSCSSCHHHHH------HHHHHHHTTCCCEEEEEECTT
T ss_pred             cEEEEEECCCHHH---HH-----HHHHHhHhhCCEEEEEEECCCCCCCchhHH------HHHHHHHcCCCeEEEEEEccC
Confidence            4588999999532   11     12234446789999999998532  11111      1223344443 5689999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+.++.....+++++.++....            ....++++||++|+|+++|.+++.+.
T Consensus       147 l~~~~~~~~~~~~i~~~l~~~~~------------~~~~~i~vSA~~g~gi~~L~~~l~~~  195 (408)
T 1s0u_A          147 LVDEKQAEENYEQIKEFVKGTIA------------ENAPIIPISAHHEANIDVLLKAIQDF  195 (408)
T ss_dssp             SSCTTTTTTHHHHHHHHHTTSTT------------TTCCEEEC------CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhcCC------------CCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            98765432345556665553321            12357899999999999999998764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.32  E-value=3.2e-13  Score=128.24  Aligned_cols=163  Identities=17%  Similarity=0.183  Sum_probs=92.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      |.|.++++|.+|+|||||+++|...    ++.. ...+|.+..+....+             .+                
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~----~~~~-~~~~giT~~i~~~~v-------------~~----------------   48 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKT----QVAA-MEAGGITQHIGAFLV-------------SL----------------   48 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHH----HHHH-SSSCCBCCCTTSCCB-------------CS----------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC----Cccc-ccCCceeEEEeEEEE-------------Ee----------------
Confidence            6789999999999999999999853    1110 011121111111000             00                


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                             ..+..+.|+||||........        ......+|.+++|+|+..........     ..........|.+
T Consensus        49 -------~~g~~i~~iDTPGhe~f~~~~--------~~~~~~aD~vILVVDa~dg~~~qt~e-----~l~~~~~~~vPiI  108 (537)
T 3izy_P           49 -------PSGEKITFLDTPGHAAFSAMR--------ARGTQVTDIVILVVAADDGVMKQTVE-----SIQHAKDAHVPIV  108 (537)
T ss_dssp             -------SCSSCCBCEECSSSCCTTTSB--------BSSSBSBSSCEEECBSSSCCCHHHHH-----HHHHHHTTTCCEE
T ss_pred             -------CCCCEEEEEECCChHHHHHHH--------HHHHccCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCcEE
Confidence                   123357899999965432211        22335689999999998643322211     2223344456889


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +++||+|+.+....     .+...+......+.    .++  ....++++||++|.|+++|.+++...
T Consensus       109 VViNKiDl~~~~~~-----~v~~~l~~~~~~~e----~~~--~~~~iv~vSAktG~GI~eLle~I~~l  165 (537)
T 3izy_P          109 LAINKCDKAEADPE-----KVKKELLAYDVVCE----DYG--GDVQAVHVSALTGENMMALAEATIAL  165 (537)
T ss_dssp             ECCBSGGGTTTSCC-----SSSSHHHHTTSCCC----CSS--SSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred             EEEecccccccchH-----HHHHHHHhhhhhHH----hcC--CCceEEEEECCCCCCchhHHHHHHHh
Confidence            99999999754321     11122222211110    000  11357899999999999999887653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.32  E-value=6.1e-12  Score=116.34  Aligned_cols=112  Identities=17%  Similarity=0.211  Sum_probs=68.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D  197 (293)
                      ..+.||||||..+.   .     ..+......+|.+++|+|+....  .+...      ....+..+.. +.++++||+|
T Consensus        83 ~~i~iiDtPGh~~f---~-----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e------~l~~~~~~~~~~iivviNK~D  148 (410)
T 1kk1_A           83 RRVSFIDAPGHEAL---M-----TTMLAGASLMDGAILVIAANEPCPRPQTRE------HLMALQIIGQKNIIIAQNKIE  148 (410)
T ss_dssp             EEEEEEECSSHHHH---H-----HHHHHCGGGCSEEEEEEETTSCSSCHHHHH------HHHHHHHHTCCCEEEEEECGG
T ss_pred             cEEEEEECCChHHH---H-----HHHHhhhhhCCEEEEEEECCCCCCChhHHH------HHHHHHHcCCCcEEEEEECcc
Confidence            45889999995321   1     22234456789999999998542  11111      1223344444 4678899999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+.++.....+++++.++...            ....+++++||++|.|+++|.+++...
T Consensus       149 l~~~~~~~~~~~~i~~~l~~~~------------~~~~~~i~vSA~~g~gi~~L~~~l~~~  197 (410)
T 1kk1_A          149 LVDKEKALENYRQIKEFIEGTV------------AENAPIIPISALHGANIDVLVKAIEDF  197 (410)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTST------------TTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC------------cCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            9875421112233333333211            112467899999999999999998764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.7e-12  Score=125.59  Aligned_cols=116  Identities=13%  Similarity=0.143  Sum_probs=63.6

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHh--hhcccCCchHHHHHHhcc-CEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAFA-DVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~qi~~a-~iivlNK~  196 (293)
                      +..+.|+||||..+....        .......+|++|+|+|+........  ..............++.+ .++|+||+
T Consensus       244 ~~~~~iiDTPG~e~f~~~--------~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKi  315 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPN--------AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM  315 (611)
T ss_dssp             SCEEEEEECCSSSCHHHH--------HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECT
T ss_pred             CceEEEEECCCCcccHHH--------HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecc
Confidence            457899999998653222        2334467899999999987421100  000000012233344434 78889999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      |+.+..+  ...+.+.+.++.+....      ........++++||++|.|+.++
T Consensus       316 Dl~~~~~--~~~~ei~~~l~~~l~~~------g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          316 DNVDWSQ--QRFEEIKSKLLPYLVDI------GFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTTTTCH--HHHHHHHHHHHHHHHHH------TCCGGGCEEEECCTTTCTTTSSC
T ss_pred             cccchhH--HHHHHHHHHHHHHHHhh------cccccCccEEeeecccCCCcccc
Confidence            9987321  12333333333221100      00001235789999999999865

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.30  E-value=8.7e-12  Score=119.11  Aligned_cols=107  Identities=10%  Similarity=0.096  Sum_probs=63.1

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVD  197 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D  197 (293)
                      ...+.++||||..........+        ....+++++|+|++.......       +...+.+..  .+.++|+||+|
T Consensus        97 ~~~~~i~Dt~G~e~~~~~~~~~--------l~~~d~ii~V~D~s~~~~~~~-------~~~~l~~~~~~~pvilV~NK~D  161 (535)
T 3dpu_A           97 ECLFHFWDFGGQEIMHASHQFF--------MTRSSVYMLLLDSRTDSNKHY-------WLRHIEKYGGKSPVIVVMNKID  161 (535)
T ss_dssp             TCEEEEECCCSCCTTTTTCHHH--------HHSSEEEEEEECGGGGGGHHH-------HHHHHHHHSSSCCEEEEECCTT
T ss_pred             eEEEEEEECCcHHHHHHHHHHH--------ccCCcEEEEEEeCCCchhHHH-------HHHHHHHhCCCCCEEEEEECCC
Confidence            4678999999955433222211        134788999999986532211       222233322  68899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.+..+.  ..+.+++....++               ..++.+||++|.|++++..++.+.
T Consensus       162 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~vSA~~g~gi~eL~~~l~~~  205 (535)
T 3dpu_A          162 ENPSYNI--EQKKINERFPAIE---------------NRFHRISCKNGDGVESIAKSLKSA  205 (535)
T ss_dssp             TCTTCCC--CHHHHHHHCGGGT---------------TCEEECCC-----CTTHHHHHHHH
T ss_pred             ccccccc--CHHHHHHHHHhcC---------------CceEEEecCcccCHHHHHHHHHHH
Confidence            9865432  3344444443322               247889999999999998887653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.30  E-value=8.3e-13  Score=119.78  Aligned_cols=116  Identities=14%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             CCCEEEEecCCCCC------cHH---HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          120 RLDHILLETTGLAN------PAP---LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       120 ~~d~iiidt~G~~~------~~~---~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                      ..++.||||||+..      +..   ...... ..++.  ...+.+++++|+.......+..    .+...+.....+.+
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiL~v~~a~~~~~~~~~~----~i~~~~~~~~~~~i  201 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVT--KENCLILAVSPANSDLANSDAL----KVAKEVDPQGQRTI  201 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHH-HHHHT--STTEEEEEEEETTSCGGGCHHH----HHHHHHCTTCTTEE
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHH-HHHHc--CCCeEEEEEecCCCccchhHHH----HHHHHhCcCCCceE
Confidence            47899999999765      322   111111 12222  2344577778876422211100    01112222245779


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHh-hcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHE-INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~-lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+||+|+.+....      +...++. ..+         -...+..++++||+++.|++++.+++.+
T Consensus       202 ~V~NK~Dl~~~~~~------~~~~~~~~~~~---------l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          202 GVITKLDLMDEGTD------ARDVLENKLLP---------LRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             EEEECGGGSCTTCC------CHHHHTTCSSC---------CTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             EEeccccccCcchh------HHHHHhCCccc---------ccCCceEEEeCCcccccccccHHHHHHH
Confidence            99999999865421      1122221 111         0123456889999999999999888754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.30  E-value=5.8e-12  Score=105.27  Aligned_cols=113  Identities=12%  Similarity=0.095  Sum_probs=67.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||......+...        ....+|.+++|+|..+.........   .+...+.+.  ..|.++|+||+|+
T Consensus        57 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl  125 (212)
T 2j0v_A           57 VNLGLWDTAGQEDYSRLRPL--------SYRGADIFVLAFSLISKASYENVLK---KWMPELRRFAPNVPIVLVGTKLDL  125 (212)
T ss_dssp             EEEEEECCCCCCCCCC--CG--------GGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCCEEEEEECHHH
T ss_pred             EEEEEEECCCcHHHHHHHHh--------hccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeCHHh
Confidence            45789999997654322211        2246789999999987543322100   122233332  5678999999998


Q ss_pred             CCCCCC------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERS------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+....      .....+.....+.++              ...++.+||++|+|++++..++.+.
T Consensus       126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~~  177 (212)
T 2j0v_A          126 RDDKGYLADHTNVITSTQGEELRKQIG--------------AAAYIECSSKTQQNVKAVFDTAIKV  177 (212)
T ss_dssp             HTCHHHHHTCSSCCCHHHHHHHHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhCccccccccCCCCHHHHHHHHHHcC--------------CceEEEccCCCCCCHHHHHHHHHHH
Confidence            764210      001233333333332              1246889999999999998887643

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.30  E-value=1e-11  Score=102.10  Aligned_cols=121  Identities=14%  Similarity=0.093  Sum_probs=67.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      .+.+-++++|.+|||||||+|+|+.....  ..+....++.  ..+                                  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~--~~~~~~~~~~--~~~----------------------------------   87 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR--PTVVSQEPLS--AAD----------------------------------   87 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------C----------------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCC--cccccCCCce--eee----------------------------------
Confidence            35667899999999999999999964211  1111222221  000                                  


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc-chHHHHhhhcccCCchHHHHH----
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAIHQ----  184 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~-~~~~~~~~~~~~~~~~~~~~q----  184 (293)
                              .....+.++||||..........++    ......++++++|+|+. ..... .....  .+......    
T Consensus        88 --------~~~~~~~l~Dt~G~~~~~~~~~~~~----~~~~~~~~~~i~v~d~~~~~~~~-~~~~~--~~~~~~~~~~~~  152 (193)
T 2ged_A           88 --------YDGSGVTLVDFPGHVKLRYKLSDYL----KTRAKFVKGLIFMVDSTVDPKKL-TTTAE--FLVDILSITESS  152 (193)
T ss_dssp             --------CCCTTCSEEEETTCCBSSCCHHHHH----HHHGGGEEEEEEEEETTCCHHHH-HHHHH--HHHHHHHHHHHH
T ss_pred             --------ecCCeEEEEECCCCchHHHHHHHHH----HhhcccCCEEEEEEECCCCchhH-HHHHH--HHHHHHhhhhhc
Confidence                    1234678999999765433332221    11123478899999998 33221 11100  01112211    


Q ss_pred             --HhccCEEEEeCCCCCCCCC
Q 022736          185 --IAFADVVILNKVDLVSPER  203 (293)
Q Consensus       185 --i~~a~iivlNK~D~~~~~~  203 (293)
                        -..|.++|+||+|+.+...
T Consensus       153 ~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          153 CENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             STTCCCEEEEEECTTSTTCCC
T ss_pred             cccCCCEEEEEEchHhcCCCC
Confidence              1467899999999987654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.30  E-value=1.4e-11  Score=118.42  Aligned_cols=110  Identities=16%  Similarity=0.190  Sum_probs=71.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      +.+.||||||..+......        .....+|.+++|+|+..........     ..........+.++++||+|+.+
T Consensus        73 ~~inliDTPGh~dF~~ev~--------r~l~~aD~aILVVDa~~gv~~qt~~-----~~~~a~~~~ipiIvviNKiDl~~  139 (600)
T 2ywe_A           73 YKLHLIDTPGHVDFSYEVS--------RALAACEGALLLIDASQGIEAQTVA-----NFWKAVEQDLVIIPVINKIDLPS  139 (600)
T ss_dssp             EEEEEECCCCSGGGHHHHH--------HHHHTCSEEEEEEETTTBCCHHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred             EEEEEEECCCcHhHHHHHH--------HHHHhCCEEEEEEECCCCccHHHHH-----HHHHHHHCCCCEEEEEeccCccc
Confidence            4577999999876543221        2235678999999998754322110     11122334668899999999986


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      ..     ..++.+.++....           ++..+++.+||++|.|++++.+++.+..
T Consensus       140 a~-----~~~v~~el~~~lg-----------~~~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          140 AD-----VDRVKKQIEEVLG-----------LDPEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             CC-----HHHHHHHHHHTSC-----------CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             cC-----HHHHHHHHHHhhC-----------CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence            53     2444444544321           2234689999999999999999886543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.30  E-value=1.7e-11  Score=103.48  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+-|+||+|......+...+.        ...+++++|.|..+........    .+...+.+.   ..+.+||.||+|
T Consensus        62 v~l~iwDtaGqe~~~~l~~~~~--------~~a~~~ilv~di~~~~Sf~~i~----~~~~~i~~~~~~~~piilVgNK~D  129 (216)
T 4dkx_A           62 IRLQLWDTAGLERFRSLIPSYI--------RDSAAAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD  129 (216)
T ss_dssp             EEEEEECCSCTTTCGGGHHHHH--------TTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTTSSEEEEEEECTT
T ss_pred             EEEEEEECCCchhhhhHHHHHh--------ccccEEEEEeecchhHHHHHHH----HHHHHHHHhcCCCCeEEEEeeccc
Confidence            4567999999876555443322        4578899999988765432210    011122221   235688889999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+..++  ..++..+..+.++               ..++.+||++|.|++++-..+.+
T Consensus       130 l~~~r~V--~~~e~~~~a~~~~---------------~~~~e~SAktg~nV~e~F~~i~~  172 (216)
T 4dkx_A          130 LADKRQV--SIEEGERKAKELN---------------VMFIETSAKAGYNVKQLFRRVAA  172 (216)
T ss_dssp             CGGGCCS--CHHHHHHHHHHHT---------------CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             hHhcCcc--cHHHHhhHHHHhC---------------CeeEEEeCCCCcCHHHHHHHHHH
Confidence            8765432  4555566655554               13567999999999988776643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.96  E-value=2.3e-13  Score=113.27  Aligned_cols=121  Identities=12%  Similarity=0.120  Sum_probs=64.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||..........        ....+|.+++|+|+.+.........   .+...+.+.  ..+.++|+||+|+
T Consensus        78 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~~---~~~~~l~~~~~~~piilv~NK~Dl  146 (204)
T 3th5_A           78 VNLGLWDTAGQEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL  146 (204)
Confidence            45669999997554333221        1246788999999876433221100   112222222  5678999999999


Q ss_pred             CCCCCCcchHHHHHHH-HHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKE-IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~-l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+....   .+.+... .+....  ..............++.+||++|+|++++..++.+
T Consensus       147 ~~~~~~---~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~  201 (204)
T 3th5_A          147 RDDKDT---IEKLKEKKLTPITY--PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
Confidence            764321   1111110 000000  00000111112236789999999999999887643

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.30  E-value=5.6e-12  Score=118.99  Aligned_cols=117  Identities=14%  Similarity=0.148  Sum_probs=63.2

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh--hcccCCchHHHHHHhc-cCEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAF-ADVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~qi~~-a~iivlNK  195 (293)
                      .+..+.|+||||..+.....        ......+|.+++|+|+.........  .....+.......+.. +.++|+||
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~--------~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK  180 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNA--------IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK  180 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHH--------HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             CCceEEEEECCCcHHHHHHH--------HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence            35678999999986533222        2334568999999999874211000  0000002223344443 47889999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      +|+.+..+  ...+++.+.++.+.....      .......++++||++|.|++++
T Consensus       181 ~Dl~~~~~--~~~~~i~~~~~~~l~~~g------~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          181 MDNVDWSQ--QRFEEIKSKLLPYLVDIG------FFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             GGGGTTCH--HHHHHHHHHHHHHHHHHT------CCGGGEEEEECCSSSCTTSSSS
T ss_pred             cCcccchH--HHHHHHHHHHHHHHHHcC------CCcccceEEEEeeecCCCcccc
Confidence            99987432  233444444433211000      0001235789999999998753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.29  E-value=9.7e-12  Score=102.14  Aligned_cols=107  Identities=14%  Similarity=0.088  Sum_probs=63.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH------HhccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------IAFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------i~~a~iivlN  194 (293)
                      ..+.|+||+|......+. .        .....+.+++|+|..+........    .+...+.+      -..+.++|.|
T Consensus        69 ~~l~i~Dt~G~~~~~~~~-~--------~~~~~~~~ilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n  135 (187)
T 3c5c_A           69 VHLRVMDTADLDTPRNCE-R--------YLNWAHAFLVVYSVDSRQSFDSSS----SYLELLALHAKETQRSIPALLLGN  135 (187)
T ss_dssp             EEEEEEECCC---CCCTH-H--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred             EEEEEEECCCCCcchhHH-H--------HHhhCCEEEEEEECCCHHHHHHHH----HHHHHHHHHhhccCCCCCEEEEEE
Confidence            457799999965432221 1        113578899999998654322110    01112221      1457899999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhccccc-CCcchhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA-YDATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa-~~~~~~~~l~~~l~~  257 (293)
                      |+|+.+..+.  ..++..+..+.++               ..++.+|| ++|+|++++..++.+
T Consensus       136 K~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sa~~~g~gv~~lf~~l~~  182 (187)
T 3c5c_A          136 KLDMAQYRQV--TKAEGVALAGRFG---------------CLFFEVSACLDFEHVQHVFHEAVR  182 (187)
T ss_dssp             CGGGGGGCSS--CHHHHHHHHHHHT---------------CEEEECCSSSCSHHHHHHHHHHHH
T ss_pred             CcchhhcCcc--CHHHHHHHHHHcC---------------CcEEEEeecCccccHHHHHHHHHH
Confidence            9999754332  3345555555443               14578999 899999999887754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.29  E-value=2.5e-12  Score=117.31  Aligned_cols=149  Identities=13%  Similarity=0.136  Sum_probs=89.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ++.++++|.+|+|||||+++|+..    .   +.-+.+.      ..+.                               
T Consensus        21 m~~i~iiG~~d~GKSTL~~~L~~~----g---iTi~~~~------~~~~-------------------------------   56 (370)
T 2elf_A           21 MANVAIIGTEKSGRTSLAANLGKK----G---TSSDITM------YNND-------------------------------   56 (370)
T ss_dssp             EEEEEEEESTTSSHHHHHHTTSEE----E---EESSSEE------EEEC-------------------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhC----C---EEEEeeE------EEEe-------------------------------
Confidence            448999999999999999999821    0   1111110      0000                               


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-E
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-V  190 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-i  190 (293)
                            ..+..+.|+||||..+.....        ......+|.+++|+| .........     ++.....+...+. +
T Consensus        57 ------~~~~~i~iiDtPGh~~f~~~~--------~~~~~~aD~ailVvd-~~g~~~qt~-----e~~~~~~~~~i~~~i  116 (370)
T 2elf_A           57 ------KEGRNMVFVDAHSYPKTLKSL--------ITALNISDIAVLCIP-PQGLDAHTG-----ECIIALDLLGFKHGI  116 (370)
T ss_dssp             ------SSSSEEEEEECTTTTTCHHHH--------HHHHHTCSEEEEEEC-TTCCCHHHH-----HHHHHHHHTTCCEEE
T ss_pred             ------cCCeEEEEEECCChHHHHHHH--------HHHHHHCCEEEEEEc-CCCCcHHHH-----HHHHHHHHcCCCeEE
Confidence                  123458999999987643222        223367899999999 543221111     0233345556677 9


Q ss_pred             EEEe-CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcc--cccCC---cchhhhhhhhhhh
Q 022736          191 VILN-KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN--CRAYD---ATHVTRLEGLLEE  257 (293)
Q Consensus       191 ivlN-K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~--~sa~~---~~~~~~l~~~l~~  257 (293)
                      +++| |+|+ +++    ..+.+.+.++.+....        .....++++  +||++   ++|+++|.+++.+
T Consensus       117 vvvNNK~Dl-~~~----~~~~~~~~i~~~l~~~--------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~  176 (370)
T 2elf_A          117 IALTRSDST-HMH----AIDELKAKLKVITSGT--------VLQDWECISLNTNKSAKNPFEGVDELKARINE  176 (370)
T ss_dssp             EEECCGGGS-CHH----HHHHHHHHHHHHTTTS--------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHH
T ss_pred             EEEEeccCC-CHH----HHHHHHHHHHHHHHhc--------CCCceEEEecccccccCcCCCCHHHHHHHHHh
Confidence            9999 9999 532    2233334444332211        011235788  99999   9999988877653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.28  E-value=3.8e-13  Score=111.60  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=57.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN  194 (293)
                      ..+.|+||||........        ......+|.+++|+|+.+......       ...++..+      ..+.++|+|
T Consensus        82 ~~~~i~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~~p~ilv~n  146 (199)
T 3l0i_B           82 IKLQIWDTAGQERFRTIT--------SSYYRGAHGIIVVYDVTDQESFNN-------VKQWLQEIDRYASENVNKLLVGN  146 (199)
T ss_dssp             EEEEEECCTTCTTCCCCS--------CC--CCCSEEEECC-CCCSHHHHH-------HHHHHHHHHSCC-CCSEEEEC-C
T ss_pred             EEEEEEECCCcHhHHHHH--------HHHhhcCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhccCCCCEEEEEE
Confidence            457899999965432211        122346789999999987543221       11222222      356799999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+|+.+....  .........+.++               ..++.+||++|+|++++..++.+.
T Consensus       147 K~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~vSA~~g~gv~~l~~~l~~~  193 (199)
T 3l0i_B          147 KCDLTTKKVV--DYTTAKEFADSLG---------------IPFLETSAKNATNVEQSFMTMAAE  193 (199)
T ss_dssp             CSSCC--CCC--CSCC-CHHHHTTT---------------CCBCCCCC---HHHHHHHHHHTTT
T ss_pred             CccCCccccC--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHHH
Confidence            9999765321  1111122222211               247889999999999999888643

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.28  E-value=1.8e-12  Score=125.02  Aligned_cols=114  Identities=16%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH--HhhhcccCCchHHHHHHhcc-CEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFA-DVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~qi~~a-~iivlNK~  196 (293)
                      +..+.||||||..+.        ..........+|++|+|||+......  ......-.........++.+ .++|+||+
T Consensus       254 ~~~i~iiDTPGh~~f--------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKi  325 (592)
T 3mca_A          254 KKIYEIGDAPGHRDF--------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL  325 (592)
T ss_dssp             -----CCEEESSSEE--------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred             CeEEEEEECCChHHH--------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecc
Confidence            456889999997642        12233445678999999999853100  00000000122344555665 67799999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhc-CCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEIN-SLAHVIRSVRCQVDLSEVLNCRAYDATHVT  249 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~ln-p~a~i~~~~~~~~~~~~i~~~sa~~~~~~~  249 (293)
                      |+.+..+  .....+...++.+. ....+      ......++++||++|.|+.
T Consensus       326 Dl~~~~~--~~~~~i~~el~~~l~~~~g~------~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          326 DLMSWSE--DRFQEIKNIVSDFLIKMVGF------KTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GGGTTCH--HHHHHHHHHHHHHHTTTSCC------CGGGEEEEEECSSSCSSSC
T ss_pred             ccccccH--HHHHHHHHHHHHHHHHhhCC------CccceEEEEEecccCcccc
Confidence            9986321  23344444454433 11100      0011257899999999987

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.28  E-value=1.8e-12  Score=115.26  Aligned_cols=121  Identities=21%  Similarity=0.228  Sum_probs=68.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      -++++|.+|+|||||+|+++..    ......+.++.+.+++...+.-                                
T Consensus         5 KI~lvG~~~vGKSSLi~~l~~~----~~~~~~~~~~~Ti~~~~~~~~~--------------------------------   48 (307)
T 3r7w_A            5 KLLLMGRSGSGKSSMRSIIFSN----YSAFDTRRLGATIDVEHSHLRF--------------------------------   48 (307)
T ss_dssp             EEEEECCTTSSHHHHHHHHHSC----CCTGGGGGCCCCCSEEEEEEEE--------------------------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC----CCCccccCcCCccceEEEEEEe--------------------------------
Confidence            3678999999999999999853    1112233444433332221110                                


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hcc
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA  188 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a  188 (293)
                          .++..+.|+||||....   .+.+...........+|++++|+|+.+........    .+..++.++     ..|
T Consensus        49 ----~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~----~~~~~l~~l~~~~~~~p  117 (307)
T 3r7w_A           49 ----LGNMTLNLWDCGGQDVF---MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE----IFAKALKQLRKYSPDAK  117 (307)
T ss_dssp             ----TTTEEEEEEEECCSHHH---HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHH----HHHHHHHHHHHHCTTCE
T ss_pred             ----CCceEEEEEECCCcHHH---hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHH----HHHHHHHHHHHhCCCCe
Confidence                12346789999997532   11110010111124688999999998654221110    012223332     468


Q ss_pred             CEEEEeCCCCCCC
Q 022736          189 DVVILNKVDLVSP  201 (293)
Q Consensus       189 ~iivlNK~D~~~~  201 (293)
                      .++|+||+|+.+.
T Consensus       118 iilv~NK~Dl~~~  130 (307)
T 3r7w_A          118 IFVLLHKMDLVQL  130 (307)
T ss_dssp             EEEEEECGGGSCH
T ss_pred             EEEEEecccccch
Confidence            8999999999874

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.27  E-value=8e-12  Score=116.37  Aligned_cols=108  Identities=18%  Similarity=0.109  Sum_probs=62.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL  198 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~  198 (293)
                      +..+.|+||||..+.....        ......+|.+++|+|+.........     .+.....++..+ .++|+||+|+
T Consensus       103 ~~~~~iiDtpGh~~f~~~~--------~~~~~~aD~~ilVvDa~~g~~~qt~-----~~l~~~~~~~~~~iIvviNK~Dl  169 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNM--------ATGASTCDLAIILVDARYGVQTQTR-----RHSYIASLLGIKHIVVAINKMDL  169 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHH--------HHHHTTCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCEEEEEEECTTT
T ss_pred             CceEEEEECCChHHHHHHH--------HHHHhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEEcCcC
Confidence            3468999999976532222        1233678999999999864322111     022333444544 6889999999


Q ss_pred             CCCCCC--cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736          199 VSPERS--GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       199 ~~~~~~--~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                      .+.++.  .....++.+.++.++..          .....++++||++|.|+++
T Consensus       170 ~~~~~~~~~~i~~~~~~~~~~~g~~----------~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          170 NGFDERVFESIKADYLKFAEGIAFK----------PTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCC----------CSEEEEEECCTTTCTTTSS
T ss_pred             CcccHHHHHHHHHHHHHHHHHhCCC----------ccCceEEEEeccCCCCccc
Confidence            864310  00122333333333210          1123578899999999876

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.27  E-value=3.4e-12  Score=122.89  Aligned_cols=124  Identities=17%  Similarity=0.100  Sum_probs=68.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      +.+.|+||||..+.....        ......+|.+|+|+|+..........     ....+.....|.++++||+|+.+
T Consensus        70 ~~i~liDTPGhe~F~~~~--------~r~~~~aD~aILVvDa~~Gv~~qT~e-----~l~~l~~~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFTTLR--------KRGGALADLAILIVDINEGFKPQTQE-----ALNILRMYRTPFVVAANKIDRIH  136 (594)
T ss_dssp             CEEEEECCCTTSCCTTSB--------CSSSBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGST
T ss_pred             CCEEEEECCCcHHHHHHH--------HHHHhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCeEEEEeccccccc
Confidence            358999999976542211        12235689999999998743221110     12233445678999999999975


Q ss_pred             CCCC--------------cchHH-------HHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          201 PERS--------------GDSLD-------ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       201 ~~~~--------------~~~~~-------~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ....              .....       ++...+....-....+..........+++++||++|.|+++|.+++..
T Consensus       137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~  214 (594)
T 1g7s_A          137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMG  214 (594)
T ss_dssp             TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHh
Confidence            3210              00011       112222211110000000000112346889999999999999988754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.27  E-value=1e-11  Score=121.86  Aligned_cols=116  Identities=14%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             CCCEEEEecCCCCC------cH---HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          120 RLDHILLETTGLAN------PA---PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       120 ~~d~iiidt~G~~~------~~---~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                      .++++||||||+..      |.   ......+ ..++.  ...|.+++|+|+.......+..    .+...+.....+.+
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv-~~yi~--~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g~pvI  221 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVT--KENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRTI  221 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHH-HHHHT--STTEEEEEEEETTSCSSSCHHH----HHHHHHCTTCSSEE
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHHHHH-HHHHh--cCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcCCCEE
Confidence            46799999999876      22   1222221 22222  4678899999997643211110    01223333456899


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHH-hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIH-EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~-~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+||+|+++....   ...   .++ ...+         -..++..++++||.+|.|+++|.+.+.+
T Consensus       222 lVlNKiDlv~~~~~---~~~---il~~~~~~---------l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          222 GVITKLDLMDEGTD---ARD---VLENKLLP---------LRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             EEEECTTSSCTTCC---SHH---HHTTCSSC---------CSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             EEEeCcccCCcchh---hHH---HHHHHhhh---------hhccCCceEEecccccccchhHHHHHHH
Confidence            99999999976531   111   111 1111         0124567899999999999999888865

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.26  E-value=1.5e-11  Score=103.36  Aligned_cols=113  Identities=12%  Similarity=0.060  Sum_probs=67.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||+|......+...        ....+|++|+|+|..+........   ..+...+.+.  ..+.++|.||+|+
T Consensus        75 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~---~~~~~~i~~~~~~~piilv~nK~Dl  143 (214)
T 3q3j_B           75 VELSLWDTSGSPYYDNVRPL--------CYSDSDAVLLCFDISRPETVDSAL---KKWRTEILDYCPSTRVLLIGCKTDL  143 (214)
T ss_dssp             EEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCTHHHHHHH---THHHHHHHHHCTTSEEEEEEECGGG
T ss_pred             EEEEEEECCCCHhHHHHHHH--------HcCCCeEEEEEEECcCHHHHHHHH---HHHHHHHHHhCCCCCEEEEEEChhh
Confidence            45789999996543222211        224688999999998754432211   0122222222  4578999999999


Q ss_pred             CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch-hhhhhhhhhhh
Q 022736          199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~-~~~l~~~l~~~  258 (293)
                      .++.          .+...........+.++              ...++.+||++|.| ++++..++...
T Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~SA~~g~g~v~~lf~~l~~~  200 (214)
T 3q3j_B          144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLG--------------AEIYLEGSAFTSEKSIHSIFRTASML  200 (214)
T ss_dssp             GGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT--------------CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhcccccCccCHHHHHHHHHHcC--------------CCEEEEeccCCCcccHHHHHHHHHHH
Confidence            7530          01123344444444432              12467899999998 99998887543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.26  E-value=6.8e-12  Score=115.80  Aligned_cols=106  Identities=20%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D  197 (293)
                      .+.++.|+||||..+.....        ......+|.+++|+|+.........     ++...+.+...+ .++++||+|
T Consensus        73 ~~~~~~iiDtpG~~~f~~~~--------~~~~~~aD~~ilVvda~~g~~~qt~-----~~l~~~~~~~ip~iivviNK~D  139 (405)
T 2c78_A           73 AKRHYSHVDCPGHADYIKNM--------ITGAAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFMNKVD  139 (405)
T ss_dssp             SSCEEEEEECCCSGGGHHHH--------HHHHTTCSSEEEEEETTTCCCHHHH-----HHHHHHHHTTCCCEEEEEECGG
T ss_pred             CCeEEEEEECCChHHHHHHH--------HHHHHHCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEECcc
Confidence            34678999999977532222        2233578999999999764322111     123344455667 468999999


Q ss_pred             CCCCCCC-cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch
Q 022736          198 LVSPERS-GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH  247 (293)
Q Consensus       198 ~~~~~~~-~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~  247 (293)
                      +.+..+. .....++.+.++.++..          -...+++++||++|.|
T Consensus       140 l~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          140 MVDDPELLDLVEMEVRDLLNQYEFP----------GDEVPVIRGSALLALE  180 (405)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHHTTSC----------TTTSCEEECCHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhccc----------ccCCCEEEccHHHhhh
Confidence            9853210 00112344444443310          0113578899999987

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.25  E-value=2e-11  Score=102.71  Aligned_cols=109  Identities=15%  Similarity=0.038  Sum_probs=60.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~  196 (293)
                      ..++++||+|.........     ..  .....+++++|+|.++........ .   +...+.+    -..|.++|.||+
T Consensus        87 ~~l~~~Dt~g~~~~~~~l~-----~~--~~~~a~~~ilVydvt~~~sf~~~~-~---~~~~l~~~~~~~~~piilVgNK~  155 (211)
T 2g3y_A           87 ATIILLDMWENKGENEWLH-----DH--CMQVGDAYLIVYSITDRASFEKAS-E---LRIQLRRARQTEDIPIILVGNKS  155 (211)
T ss_dssp             EEEEEECCTTTTHHHHHHH-----HC--CCCCCSEEEEEEETTCHHHHHHHH-H---HHHHHHTSGGGTTSCEEEEEECT
T ss_pred             eEEEEeecCCCcchhhhHH-----HH--HHhhCCEEEEEEECCCHHHHHHHH-H---HHHHHHHHhCCCCCcEEEEEECh
Confidence            3467999999764211111     11  112357788888877543221110 0   1111111    135789999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+..+.  ..++.....+..+               ..++.+||++|+|++++..++.+
T Consensus       156 DL~~~r~v--~~~e~~~~a~~~~---------------~~~~e~SAk~g~~v~elf~~l~~  199 (211)
T 2g3y_A          156 DLVRCREV--SVSEGRACAVVFD---------------CKFIETSAAVQHNVKELFEGIVR  199 (211)
T ss_dssp             TCGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHhcCceE--eHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            99754322  2222222222221               13578999999999999888754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.25  E-value=6.1e-12  Score=115.66  Aligned_cols=110  Identities=17%  Similarity=0.040  Sum_probs=44.0

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhc--cCcceeeccchhHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL--ANGCICCTVKHSLVQALE  112 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l--~~gcicc~~~~~l~~~l~  112 (293)
                      ++|+|.+|+|||||+|+|+    +.+ +.+.+.++++.......+.... ....+.+..+  ++.+.|.           
T Consensus         3 I~ivG~pnvGKSTL~n~L~----~~~-~~~~~~p~tT~~~~~g~~~~~~-~~~~~~l~~~~~p~~~~~~-----------   65 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAAT----LVD-VEIANYPFTTIEANVGVTYAIT-DHPCKELGCSPNPQNYEYR-----------   65 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHH----C---------------CCEEEEEEEE-ECSCSSSCCSCCCSSSCEE-----------
T ss_pred             EEEECCCCCCHHHHHHHHH----CCC-CcccCCCCcccCCceEEEeecc-CCchHHhhhhccccccccc-----------
Confidence            6889999999999999999    555 5566666653322211100000 0000000000  0000000           


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL  165 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~  165 (293)
                         ......++.|+||||+.......+.+ ...++.....+|.+++|+|+...
T Consensus        66 ---~~~~~~~i~lvDtpG~~~~a~~~~~l-~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           66 ---NGLALIPVKMVDVAGLVPGAHEGRGL-GNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ---TTEEEEEEEEEECC----------------CCCSSTTCSEEEEEEETTCC
T ss_pred             ---CCcceEEEEEEECCCcccchhhhhhH-HHHHHHHHhcCCEEEEEEecccc
Confidence               00012358899999986533222211 13334556789999999999763

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.25  E-value=2.1e-11  Score=99.61  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=64.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||......+..        ......+.+++|+|..+.........   .+...+.+.  ..|.++|.||+|+
T Consensus        55 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl  123 (184)
T 1m7b_A           55 IELSLWDTSGSPYYDNVRP--------LSYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL  123 (184)
T ss_dssp             EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCEEEEEEECGGG
T ss_pred             EEEEEEECCCChhhhhhHH--------hhcCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEEEcchh
Confidence            4578999999643322211        12246788999999987543222100   022222222  4578999999999


Q ss_pred             CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC-Ccchhhhhhhhhhh
Q 022736          199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY-DATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~-~~~~~~~l~~~l~~  257 (293)
                      .+..          .+....++.....+.++              ...++.+||+ ++.|++++..++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~gi~~l~~~i~~  179 (184)
T 1m7b_A          124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIG--------------AATYIECSALQSENSVRDIFHVATL  179 (184)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--------------CSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred             hcchhhHhhhhhcccCCCCHHHHHHHHHHcC--------------CcEEEEeeecCCCcCHHHHHHHHHH
Confidence            7531          00112333444444332              1246789998 68999999887754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.24  E-value=4.9e-11  Score=99.63  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||......+..        .....++++++|+|..+.........   .+...+.+.  ..+.++|.||+|+
T Consensus        76 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~ilv~D~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl  144 (205)
T 1gwn_A           76 IELSLWDTSGSPYYDNVRP--------LSYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL  144 (205)
T ss_dssp             EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCEEEEEEECGGG
T ss_pred             EEEEEEeCCCcHhhhHHHH--------hhccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEEechhh
Confidence            4578999999644322211        12246788999999987543222100   122222222  4578999999999


Q ss_pred             CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC-Ccchhhhhhhhhhh
Q 022736          199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY-DATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~-~~~~~~~l~~~l~~  257 (293)
                      .+..          .+....++.....+.++              ...++.+||+ ++.|++++..++.+
T Consensus       145 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~SAk~~~~gv~~lf~~l~~  200 (205)
T 1gwn_A          145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIG--------------AATYIECSALQSENSVRDIFHVATL  200 (205)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--------------CSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhcccccCCCCHHHHHHHHHHcC--------------CCEEEEeeeccCCcCHHHHHHHHHH
Confidence            7531          00012233444443332              1246789998 68999998887754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=106.07  Aligned_cols=133  Identities=14%  Similarity=0.115  Sum_probs=64.5

Q ss_pred             CCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchh
Q 022736           27 NDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        27 ~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      ....+.+-|+|+|.+|+|||||+|+|+..    +. .....++.  +++......         ..              
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~----~~-~~~~~~~~--~~t~~~~~~---------~~--------------   73 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGR----KV-FHSGTAAK--SITKKCEKR---------SS--------------   73 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTS----CC-SCC---------CCSCEEE---------EE--------------
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCC----Cc-CccCCCCC--ceeeeEEEE---------EE--------------
Confidence            33455677999999999999999999953    22 01111110  111110000         00              


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCCcHH----HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI  182 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~~----~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~  182 (293)
                                ...+..+.|+||||+.+...    ..+.+. .........++++++|+|+..+.......  +..+...+
T Consensus        74 ----------~~~~~~i~liDTpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~~~--l~~~~~~~  140 (239)
T 3lxx_A           74 ----------SWKETELVVVDTPGIFDTEVPNAETSKEII-RCILLTSPGPHALLLVVPLGRYTEEEHKA--TEKILKMF  140 (239)
T ss_dssp             ----------EETTEEEEEEECCSCC-----CHHHHHHHH-HHHHHTTTCCSEEEEEEETTCCSSHHHHH--HHHHHHHH
T ss_pred             ----------EeCCceEEEEECCCccCCCCCHHHHHHHHH-HHHHhcCCCCcEEEEEeeCCCCCHHHHHH--HHHHHHHh
Confidence                      01234678999999876421    111111 11122234678999999986543321110  00011111


Q ss_pred             -HHHhccCEEEEeCCCCCCCC
Q 022736          183 -HQIAFADVVILNKVDLVSPE  202 (293)
Q Consensus       183 -~qi~~a~iivlNK~D~~~~~  202 (293)
                       .....+.++|+||+|+++..
T Consensus       141 ~~~~~~~~iiv~nK~D~~~~~  161 (239)
T 3lxx_A          141 GERARSFMILIFTRKDDLGDT  161 (239)
T ss_dssp             HHHHGGGEEEEEECGGGC---
T ss_pred             hhhccceEEEEEeCCccCCcc
Confidence             12334889999999998654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.24  E-value=2.8e-11  Score=113.39  Aligned_cols=114  Identities=10%  Similarity=0.101  Sum_probs=63.0

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh--hcccCCchHHHHHHhcc-CEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~qi~~a-~iivlNK~  196 (293)
                      +..+.|+||||..+.....        ......+|.+|+|+|+.........  ............+...+ .++++||+
T Consensus        84 ~~~~~iiDtPGh~~f~~~~--------~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~  155 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNM--------ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKM  155 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHH--------HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECG
T ss_pred             CceEEEEECCCcHHHHHHH--------HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence            4578999999976432222        2344678999999999875422000  00000012233444555 67889999


Q ss_pred             CCCCCCC--CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          197 DLVSPER--SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       197 D~~~~~~--~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      |+.+..+  ......++...++.+.-.          .....++++||++|.|+.++
T Consensus       156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~----------~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          156 DSVKWDESRFQEIVKETSNFIKKVGYN----------PKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHHHHTCC----------GGGCCEEECCTTTCBTTTBC
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHcCCC----------ccCceEEEeecccCcCcccc
Confidence            9984221  001122333334433210          00135788999999998644

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.23  E-value=2.4e-11  Score=112.15  Aligned_cols=162  Identities=20%  Similarity=0.217  Sum_probs=91.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      +.++|+|++|||||||++.|...    +. .+...+.++.......+.             +                  
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~----~~-~i~~~~ftTl~p~~G~V~-------------~------------------  201 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRA----HP-KIAPYPFTTLSPNLGVVE-------------V------------------  201 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSS----CC-EECCCTTCSSCCEEEEEE-------------C------------------
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC----Cc-cccCcccceecceeeEEE-------------e------------------
Confidence            45899999999999999999843    22 223333221111100000             0                  


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc-chHHHHhhhcccCCchHHH-HHHhccCE
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAI-HQIAFADV  190 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~-~~~~~~~~~~~~~~~~~~~-~qi~~a~i  190 (293)
                           .....+.++|+||+.+.......+ ....+....+++.++.++|.+ .....+.....  +...+. .....|.+
T Consensus       202 -----~~~~~~~l~DtpGli~~a~~~~~L-~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~--el~~la~aL~~~P~I  273 (416)
T 1udx_A          202 -----SEEERFTLADIPGIIEGASEGKGL-GLEFLRHIARTRVLLYVLDAADEPLKTLETLRK--EVGAYDPALLRRPSL  273 (416)
T ss_dssp             -----SSSCEEEEEECCCCCCCGGGSCCS-CHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHH--HHHHHCHHHHHSCEE
T ss_pred             -----cCcceEEEEeccccccchhhhhhh-hHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHH--HHHHHhHHhhcCCEE
Confidence                 012457899999986532211111 111233345688899999985 22222211100  000010 12357899


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+||+|+....    .+..+.+.++..+               ..++.+||+++++++++..++.+
T Consensus       274 LVlNKlDl~~~~----~~~~l~~~l~~~g---------------~~vi~iSA~~g~gi~eL~~~i~~  321 (416)
T 1udx_A          274 VALNKVDLLEEE----AVKALADALAREG---------------LAVLPVSALTGAGLPALKEALHA  321 (416)
T ss_dssp             EEEECCTTSCHH----HHHHHHHHHHTTT---------------SCEEECCTTTCTTHHHHHHHHHH
T ss_pred             EEEECCChhhHH----HHHHHHHHHHhcC---------------CeEEEEECCCccCHHHHHHHHHH
Confidence            999999987641    2344444443211               24688999999999999888764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.22  E-value=3.5e-11  Score=115.87  Aligned_cols=126  Identities=19%  Similarity=0.213  Sum_probs=76.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      ..+.||||||..+......        .....+|.+++|+|+..........     ..........+.++++||+|+.+
T Consensus        71 ~~l~liDTPGh~dF~~ev~--------~~l~~aD~aILVVDa~~gv~~qt~~-----~~~~~~~~~ipiIvViNKiDl~~  137 (599)
T 3cb4_D           71 YQLNFIDTPGHVDFSYEVS--------RSLAACEGALLVVDAGQGVEAQTLA-----NCYTAMEMDLEVVPVLNKIDLPA  137 (599)
T ss_dssp             EEEEEEECCCCGGGHHHHH--------HHHHHCSEEEEEEETTTCCCTHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred             EEEEEEECCCchHHHHHHH--------HHHHHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEeeeccCccc
Confidence            4578999999876543322        2235679999999997643221110     01112234568899999999986


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEE
Q 022736          201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSI  276 (293)
Q Consensus       201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  276 (293)
                      ..     ..++.+.++....           ++..+++.+||++|.|++++.+++.+....|. ...+.+++.+.+
T Consensus       138 a~-----~~~v~~ei~~~lg-----------~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~-~~~~~p~~alI~  196 (599)
T 3cb4_D          138 AD-----PERVAEEIEDIVG-----------IDATDAVRCSAKTGVGVQDVLERLVRDIPPPE-GDPEGPLQALII  196 (599)
T ss_dssp             CC-----HHHHHHHHHHHTC-----------CCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC-CCTTSCCEEEEE
T ss_pred             cc-----HHHHHHHHHHHhC-----------CCcceEEEeecccCCCchhHHHHHhhcCCCcc-ccccCCceeeee
Confidence            53     2344444443321           12246889999999999999998866543232 123344554443

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.21  E-value=2.5e-11  Score=114.32  Aligned_cols=161  Identities=20%  Similarity=0.220  Sum_probs=90.8

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC-CCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .|.|.++++|..|+|||||+++|....    +  ...+ .|.+..+....+             .               
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~----v--~~~e~~GIT~~i~~~~v-------------~---------------   47 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTK----V--ASGEAGGITQHIGAYHV-------------E---------------   47 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHH----H--SBTTBCCCCCCSSCCCC-------------C---------------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCC----C--ccccCCCeeEeEEEEEE-------------E---------------
Confidence            478999999999999999999998531    0  0011 111010000000             0               


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                               ..+..+.|+||||..+....        .......+|.+++|+|+.........     +..........|
T Consensus        48 ---------~~~~~i~~iDTPGhe~f~~~--------~~~~~~~aD~aILVVda~~g~~~qT~-----e~l~~~~~~~vP  105 (501)
T 1zo1_I           48 ---------TENGMITFLDTPGHAAFTSM--------RARGAQATDIVVLVVAADDGVMPQTI-----EAIQHAKAAQVP  105 (501)
T ss_dssp             ---------TTSSCCCEECCCTTTCCTTS--------BCSSSBSCSSEEEEEETTTBSCTTTH-----HHHHHHHHTTCC
T ss_pred             ---------ECCEEEEEEECCCcHHHHHH--------HHHHHhhCCEEEEEeecccCccHHHH-----HHHHHHHhcCce
Confidence                     12345789999997553221        12334568999999999764321110     012223344678


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .++++||+|+.+....     ++...+....    .+....+  ....++++||++|.|+++|.+++..
T Consensus       106 iIVviNKiDl~~~~~~-----~v~~~l~~~~----~~~~~~~--~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          106 VVVAVNKIDKPEADPD-----RVKNELSQYG----ILPEEWG--GESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             EEEEEECSSSSTTCCC-----CTTCCCCCCC----CCTTCCS--SSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             EEEEEEeccccccCHH-----HHHHHHHHhh----hhHHHhC--CCccEEEEeeeeccCcchhhhhhhh
Confidence            8999999999764210     1111111000    0000000  1135789999999999999988854

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.21  E-value=2.6e-10  Score=105.62  Aligned_cols=149  Identities=15%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      +..+++++|++||||||++..|...  ..|.+++++..|+.. .+....+-..+       +  ...--|..+....+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R-~aa~eqL~~~~-------~--~~gvpv~~~~~~~dp~  168 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR-PGAYHQLRQLL-------D--RYHIEVFGNPQEKDAI  168 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS-THHHHHHHHHH-------G--GGTCEEECCTTCCCHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc-hhHHHHHHHHH-------H--hcCCcEEecCCCCCHH
Confidence            5679999999999999999999863  568999999998764 21111110000       0  0000011111122222


Q ss_pred             ----HHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736          109 ----QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH  183 (293)
Q Consensus       109 ----~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~  183 (293)
                          ..+....  ..++|++||||+|... .......+.   .+......+.+++|+|+........       ....+.
T Consensus       169 ~i~~~al~~a~--~~~~DvVIIDTaGrl~~d~~lm~el~---~i~~~~~pd~vlLVvDA~~gq~a~~-------~a~~f~  236 (443)
T 3dm5_A          169 KLAKEGVDYFK--SKGVDIIIVDTAGRHKEDKALIEEMK---QISNVIHPHEVILVIDGTIGQQAYN-------QALAFK  236 (443)
T ss_dssp             HHHHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHHH-------HHHHHH
T ss_pred             HHHHHHHHHHH--hCCCCEEEEECCCcccchHHHHHHHH---HHHHhhcCceEEEEEeCCCchhHHH-------HHHHHH
Confidence                2233221  3569999999999554 333332221   1223345688999999987533221       122333


Q ss_pred             HHhccCEEEEeCCCCCCC
Q 022736          184 QIAFADVVILNKVDLVSP  201 (293)
Q Consensus       184 qi~~a~iivlNK~D~~~~  201 (293)
                      +......+|+||+|....
T Consensus       237 ~~~~i~gVIlTKlD~~~~  254 (443)
T 3dm5_A          237 EATPIGSIIVTKLDGSAK  254 (443)
T ss_dssp             HSCTTEEEEEECCSSCSS
T ss_pred             hhCCCeEEEEECCCCccc
Confidence            333456799999998753

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.21  E-value=2.4e-11  Score=113.23  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHH-h-hhcccCCchHHHHHHhc-cCEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI-D-KYRHLSSYPEAIHQIAF-ADVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~-~-~~~~~~~~~~~~~qi~~-a~iivlNK  195 (293)
                      .+..+.|+||||..+.....        ......+|.+|+|+|+....... . ......+......++.. +.++++||
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~--------~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK  153 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNM--------ITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK  153 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHH--------HHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred             CCeEEEEEECCCcHHHHHHH--------HhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence            35679999999987643332        23346789999999998642110 0 00000011223344454 46899999


Q ss_pred             CCCCCCCCC----cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          196 VDLVSPERS----GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       196 ~D~~~~~~~----~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      +|+.+....    ....+++++.++.++-.          .....++++||++|+|+.++
T Consensus       154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFN----------TNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             GGGSSSTTCHHHHHHHHHHHHHHHHHTTCC----------CTTCEEEECBTTTTBTTTBC
T ss_pred             ccCCCccccHHHHHHHHHHHHHHHHHcCCC----------cCCceEEEeecccCcccccc
Confidence            999873210    01123344444433210          00134788999999998643

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.19  E-value=1e-11  Score=121.89  Aligned_cols=72  Identities=14%  Similarity=0.113  Sum_probs=42.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      .++.||||||+.+.....     .........+|.+++|+|+.......+...    +...+.....+.++|+||+|+.+
T Consensus       174 ~~l~LiDTPGl~~~~~~~-----~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~----l~~~l~~~~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARN-----ELSLGYVNNCHAILFVMRASQPCTLGERRY----LENYIKGRGLTVFFLVNAWDQVR  244 (695)
T ss_dssp             TTEEEEECCCHHHHHTCH-----HHHTHHHHSSSEEEEEEETTSTTCHHHHHH----HHHHTTTSCCCEEEEEECGGGGG
T ss_pred             CCeEEEECCCCCchhhHH-----HHHHHHHHhCCEEEEEEeCCCccchhHHHH----HHHHHHhhCCCEEEEEECccccc
Confidence            468999999976532211     111223356899999999976533222100    11122223457899999999875


Q ss_pred             C
Q 022736          201 P  201 (293)
Q Consensus       201 ~  201 (293)
                      .
T Consensus       245 ~  245 (695)
T 2j69_A          245 E  245 (695)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.18  E-value=6.1e-11  Score=116.41  Aligned_cols=174  Identities=16%  Similarity=0.115  Sum_probs=90.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      ..+++.++|+|.+|+|||||+|+|+... .-.+.+-+.  .+. ...|...... .      ..+.+...+.++.     
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~--~~~-~~~D~~~~e~-~------~giTi~~~~~~~~-----   71 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETH--EGA-SQMDWMEQEQ-D------RGITITSAATTAA-----   71 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-----------------------------------CCSEEEEE-----
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCcccccccc--CCc-eecccchhhh-h------cCceEeeeeEEEE-----
Confidence            3468889999999999999999999521 011111111  111 0011100000 0      0011111112221     


Q ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                                ..+.++.||||||..+.....        ......+|.+++|+|+..........     ....+.+...
T Consensus        72 ----------~~~~~i~liDTPG~~df~~~~--------~~~l~~aD~~llVvDa~~g~~~~~~~-----~~~~~~~~~~  128 (693)
T 2xex_A           72 ----------WEGHRVNIIDTPGHVDFTVEV--------ERSLRVLDGAVTVLDAQSGVEPQTET-----VWRQATTYGV  128 (693)
T ss_dssp             ----------ETTEEEEEECCCCCSSCCHHH--------HHHHHHCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTC
T ss_pred             ----------ECCeeEEEEECcCCcchHHHH--------HHHHHHCCEEEEEECCCCCCcHHHHH-----HHHHHHHcCC
Confidence                      124578999999987643322        12234589999999997643322211     1223344567


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.++++||+|+...+     ...+.+.++.......          ....+++|+  +.++..+.+++.+
T Consensus       129 p~ilviNK~Dl~~~~-----~~~~~~~l~~~l~~~~----------~~~~ipisa--~~~~~~l~d~l~~  181 (693)
T 2xex_A          129 PRIVFVNKMDKLGAN-----FEYSVSTLHDRLQANA----------APIQLPIGA--EDEFEAIIDLVEM  181 (693)
T ss_dssp             CEEEEEECTTSTTCC-----HHHHHHHHHHHHCCCE----------EESEEEECC--GGGCCEEEETTTT
T ss_pred             CEEEEEECCCccccc-----hHHHHHHHHHHhCCCc----------eeEEeeccc--CCCcceeeeeecc
Confidence            899999999998753     3444444444322111          123456665  6666666666644

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.18  E-value=3.3e-11  Score=99.62  Aligned_cols=118  Identities=11%  Similarity=0.079  Sum_probs=61.9

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-HHHhhhcccCCchHHHHHH-----hccCEEEE
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQI-----AFADVVIL  193 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~qi-----~~a~iivl  193 (293)
                      ...+.|+||+|.........    . .......++++|+|+|+.... .....      +..++.++     ..+.++|.
T Consensus        68 ~~~l~i~Dt~G~~~~~~~~~----~-~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~l~~~~~~~~~~piilv~  136 (196)
T 3llu_A           68 FVNFQIWDFPGQMDFFDPTF----D-YEMIFRGTGALIYVIDAQDDYMEALTR------LHITVSKAYKVNPDMNFEVFI  136 (196)
T ss_dssp             SCCEEEEECCSSCCTTCTTC----C-HHHHHHTCSEEEEEEETTSCCHHHHHH------HHHHHHHHHHHCTTCEEEEEE
T ss_pred             eeEEEEEECCCCHHHHhhhh----h-cccccccCCEEEEEEECCCchHHHHHH------HHHHHHHHHhcCCCCcEEEEE
Confidence            46789999999654322210    0 001124578999999998641 11111      22333333     45789999


Q ss_pred             eCCCCCCCCCCcchHHHHHHH-HHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKE-IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~-l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      ||+|+.+.+........+... .+.+...      ...... ..++.+||++ +|++++...+.
T Consensus       137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~-~~~~e~Sa~~-~~v~~~f~~l~  192 (196)
T 3llu_A          137 HKVDGLSDDHKIETQRDIHQRANDDLADA------GLEKLH-LSFYLTSIYD-HSIFEAFSKVV  192 (196)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHHT------TCTTSC-EEEEEECTTS-THHHHHHHHHH
T ss_pred             eccccCchhhhhHHHhHHHHHHHHHHHHh------hhhcCC-cceEEEEech-hhHHHHHHHHH
Confidence            999998743110001111111 1111100      000011 2467899999 99998877664

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.18  E-value=4.3e-11  Score=106.71  Aligned_cols=113  Identities=13%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+.|+||||.........        .....+|++++|+|+...........   .+...+.+.  ..+.++|+||+|+
T Consensus       203 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl  271 (332)
T 2wkq_A          203 VNLGLWDTAGLEDYDRLRP--------LSYPQTDVFLICFSLVSPASFHHVRA---KWYPEVRHHCPNTPIILVGTKLDL  271 (332)
T ss_dssp             EEEEEEEECCCGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTSCEEEEEECHHH
T ss_pred             EEEEEEeCCCchhhhHHHH--------HhccCCCEEEEEEeCCCHHHHHHHHH---HHHHHHHhhCCCCcEEEEEEchhc
Confidence            3456999999754322221        12246889999999987554322110   122223332  5688999999998


Q ss_pred             CCCCC----------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~----------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+...          .........+..+..              ....++.+||++|+|++++..++.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~  327 (332)
T 2wkq_A          272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIRA  327 (332)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccchhhhccccccccccHHHHHHHHHHc--------------CCcEEEEecCCCCcCHHHHHHHHHHH
Confidence            75421          001122222222222              11357889999999999998887643

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.17  E-value=3e-11  Score=111.22  Aligned_cols=116  Identities=19%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D  197 (293)
                      .+.++.|+||||..+...        ........+|.+++|+|+..........     ....+.+...+. ++++||+|
T Consensus        64 ~~~~~~iiDtpG~~~f~~--------~~~~~~~~aD~~ilVvda~~g~~~qt~e-----~l~~~~~~~vp~iivviNK~D  130 (397)
T 1d2e_A           64 AARHYAHTDCPGHADYVK--------NMITGTAPLDGCILVVAANDGPMPQTRE-----HLLLARQIGVEHVVVYVNKAD  130 (397)
T ss_dssp             SSCEEEEEECSSHHHHHH--------HHHHTSSCCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCCEEEEEECGG
T ss_pred             CCeEEEEEECCChHHHHH--------HHHhhHhhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCeEEEEEECcc
Confidence            346789999999653211        1123345789999999998643221110     223344556674 68999999


Q ss_pred             CCCCCCC-cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch----------hhhhhhhhhh
Q 022736          198 LVSPERS-GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH----------VTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~-~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~----------~~~l~~~l~~  257 (293)
                      +.+..+. .....++++.++.++-.          -...+++++||++|.+          +.+|.+++.+
T Consensus       131 l~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~  191 (397)
T 1d2e_A          131 AVQDSEMVELVELEIRELLTEFGYK----------GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (397)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHTTSC----------TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCC----------cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence            9853210 01112344444443210          0013578899998764          6667776654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.17  E-value=7e-11  Score=97.56  Aligned_cols=108  Identities=15%  Similarity=0.059  Sum_probs=57.6

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD  197 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~D  197 (293)
                      .++++||+|......    .+...+   ....+++++|+|.++........    .+...+.+.    ..+.++|.||+|
T Consensus        57 ~l~~~Dt~~~~~~~~----~~~~~~---~~~~~~~i~v~dv~~~~s~~~~~----~~~~~l~~~~~~~~~piilV~NK~D  125 (192)
T 2cjw_A           57 TIILLDMWENKGENE----WLHDHC---MQVGDAYLIVYSITDRASFEKAS----ELRIQLRRARQTEDIPIILVGNKSD  125 (192)
T ss_dssp             EEEEECCCCC----C----TTGGGH---HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred             EEEEEEeccCcchhh----hHHHhh---cccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCCCCCeEEEEEechh
Confidence            467899999654211    111111   12357788888887543321110    011122222    356789999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +......  ............+               ..++.+||++|.|++++..++.+
T Consensus       126 l~~~r~v--~~~~~~~~a~~~~---------------~~~~e~SA~~g~~v~~lf~~l~~  168 (192)
T 2cjw_A          126 LVRXREV--SVSEGRAXAVVFD---------------XKFIETSAAVQHNVKELFEGIVR  168 (192)
T ss_dssp             CGGGCCS--CHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             hhccccc--cHHHHHHHHHHhC---------------CceEEeccccCCCHHHHHHHHHH
Confidence            8754322  2222222212111               13578999999999998887754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.16  E-value=1.9e-11  Score=111.24  Aligned_cols=125  Identities=14%  Similarity=0.122  Sum_probs=75.6

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      ....+-|+|+|+||+|||||+|+|+    +.+ +.+.+.+++|.......+.                            
T Consensus        69 k~g~a~V~ivG~PNvGKSTL~n~Lt----~~~-~~v~~~pftT~~~~~g~~~----------------------------  115 (376)
T 4a9a_A           69 RTGVASVGFVGFPSVGKSTLLSKLT----GTE-SEAAEYEFTTLVTVPGVIR----------------------------  115 (376)
T ss_dssp             BCSSEEEEEECCCCHHHHHHHHHHH----SBC-CCGGGTCSSCCCEEEEEEE----------------------------
T ss_pred             ecCCCeEEEECCCCCCHHHHHHHHh----CCC-CcccCCCCceeeeeeEEEE----------------------------
Confidence            3456789999999999999999999    444 3346666663322111111                            


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH-HHHHhc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA-IHQIAF  187 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~-~~qi~~  187 (293)
                               ..+.++.|+||||+.+........ ....+.....+|.+++|+|+.............  ...+ ..-...
T Consensus       116 ---------~~~~~i~l~D~pGl~~~a~~~~~~-g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~E--L~~~~~~l~~k  183 (376)
T 4a9a_A          116 ---------YKGAKIQMLDLPGIIDGAKDGRGR-GKQVIAVARTCNLLFIILDVNKPLHHKQIIEKE--LEGVGIRLNKT  183 (376)
T ss_dssp             ---------ETTEEEEEEECGGGCCC-----CH-HHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHH--HHHTTEEETCC
T ss_pred             ---------eCCcEEEEEeCCCccCCchhhhHH-HHHHHHHHHhcCccccccccCccHHHHHHHHHH--HHHhhHhhccC
Confidence                     234568899999987654433222 234466667899999999998765443321000  0000 011234


Q ss_pred             cCEEEEeCCCC
Q 022736          188 ADVVILNKVDL  198 (293)
Q Consensus       188 a~iivlNK~D~  198 (293)
                      +-.+++||.|.
T Consensus       184 ~~~i~~nK~d~  194 (376)
T 4a9a_A          184 PPDILIKKKEK  194 (376)
T ss_dssp             CCCEEEEECSS
T ss_pred             ChhhhhhHhhh
Confidence            67899999996

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.16  E-value=2.9e-11  Score=98.89  Aligned_cols=113  Identities=11%  Similarity=0.088  Sum_probs=58.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEe
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILN  194 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlN  194 (293)
                      ...+.++||+|......+..     .++   ...+.+++|+|.+........      ...++.++     ..+.++|.|
T Consensus        55 ~~~~~i~Dt~G~~~~~~~~~-----~~~---~~~~~~i~v~d~~~~~~s~~~------~~~~~~~~~~~~~~~piilv~n  120 (184)
T 2zej_A           55 DLVLNVWDFAGREEFYSTHP-----HFM---TQRALYLAVYDLSKGQAEVDA------MKPWLFNIKARASSSPVILVGT  120 (184)
T ss_dssp             -CEEEEEEECSHHHHHTTSH-----HHH---HHSEEEEEEEEGGGCHHHHHT------HHHHHHHHHHHCTTCEEEEEEE
T ss_pred             ceEEEEEecCCCHHHHHhhH-----HHc---cCCcEEEEEEeCCcchhHHHH------HHHHHHHHHhhCCCCcEEEEEE
Confidence            35678999999543221111     111   235678889998764322221      12222221     356777889


Q ss_pred             CCCCCCCCCCcchHHH-HHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc-hhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDE-LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~-~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~-~~~~l~~~l~~  257 (293)
                      |+|+.+..    .... .....+.+...       .+......++.+||+++. ++++|...+.+
T Consensus       121 K~Dl~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~  174 (184)
T 2zej_A          121 HLDVSDEK----QRKACMSKITKELLNK-------RGFPAIRDYHFVNATEESDALAKLRKTIIN  174 (184)
T ss_dssp             CGGGCCHH----HHHHHHHHHHHHTTTC-------TTSCEEEEEEECCTTSCCHHHHHHHHHHHH
T ss_pred             CCCcccch----hhHHHHHHHHHHHHHh-------cCCcchhheEEEecccCchhHHHHHHHHHH
Confidence            99987542    1111 11112222111       000001246889999995 99888877654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.14  E-value=1.1e-10  Score=108.39  Aligned_cols=194  Identities=15%  Similarity=0.116  Sum_probs=102.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceee--ccch
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC--TVKH  105 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc--~~~~  105 (293)
                      .+..+++++|++|+||||+++.|...  ..|+++.++..|+.....++.  +...        .....-.++.+  +.++
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~q--L~~~--------~~~~gv~v~~~~~~~~d  166 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQ--LKQL--------AEKIHVPIYGDETRTKS  166 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGS--SHHH--------HHHSSCCEECCSSSCCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHH--HHHh--------hhccCcceEecCCCCCC
Confidence            34568999999999999999999864  347899999988753111110  0000        00000000001  1111


Q ss_pred             --hH-HHHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736          106 --SL-VQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA  181 (293)
Q Consensus       106 --~l-~~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~  181 (293)
                        ++ ...+.    ...++|++||||||..... .+.....   .+......|.+++|+|+.......          ..
T Consensus       167 p~~i~~~~l~----~~~~~D~vIIDT~G~~~~~~~l~~~l~---~i~~~~~~d~vllVvda~~g~~~~----------~~  229 (432)
T 2v3c_C          167 PVDIVKEGME----KFKKADVLIIDTAGRHKEEKGLLEEMK---QIKEITNPDEIILVIDGTIGQQAG----------IQ  229 (432)
T ss_dssp             SSTTHHHHHH----TTSSCSEEEEECCCSCSSHHHHHHHHH---HTTSSSCCSEEEEEEEGGGGGGHH----------HH
T ss_pred             HHHHHHHHHH----HhhCCCEEEEcCCCCccccHHHHHHHH---HHHHHhcCcceeEEeeccccHHHH----------HH
Confidence              12 22222    2267899999999976542 2222211   123334688899999997653211          11


Q ss_pred             HHHHh--c-c-CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeec---CCCCchhhcccccCCcch-hhhhhh
Q 022736          182 IHQIA--F-A-DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR---CQVDLSEVLNCRAYDATH-VTRLEG  253 (293)
Q Consensus       182 ~~qi~--~-a-~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~---~~~~~~~i~~~sa~~~~~-~~~l~~  253 (293)
                      .....  . + ..+|+||+|.....      ..+........-....+....   ...++.+...+|+..|.| +..|.+
T Consensus       230 ~~~~~~~~~~i~gvVlnK~D~~~~~------g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e  303 (432)
T 2v3c_C          230 AKAFKEAVGEIGSIIVTKLDGSAKG------GGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLE  303 (432)
T ss_dssp             HHHHHTTSCSCEEEEEECSSSCSTT------HHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSS
T ss_pred             HHHHhhcccCCeEEEEeCCCCccch------HHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHH
Confidence            22222  2 3 78999999986432      222333333322222221111   111345556678888877 666655


Q ss_pred             hhh
Q 022736          254 LLE  256 (293)
Q Consensus       254 ~l~  256 (293)
                      .++
T Consensus       304 ~~~  306 (432)
T 2v3c_C          304 KAE  306 (432)
T ss_dssp             TTT
T ss_pred             HHH
Confidence            553

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.12  E-value=4.9e-11  Score=112.04  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=58.6

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh--hcccCCchHHHHHHhcc-CEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~qi~~a-~iivlNK~  196 (293)
                      +..+.|+||||..+...        ........+|.+|+|+|+.........  ...-.+......+.+.+ .++++||+
T Consensus       120 ~~~~~iiDtPGh~~f~~--------~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~  191 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVT--------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM  191 (467)
T ss_dssp             SEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred             CeEEEEEECCCcHHHHH--------HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECc
Confidence            35689999999754321        123344678999999999875421000  00000112233445566 68899999


Q ss_pred             CCCCCC--C--CcchHHHHHHHHHhh-cCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          197 DLVSPE--R--SGDSLDELEKEIHEI-NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       197 D~~~~~--~--~~~~~~~~~~~l~~l-np~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      |+.+.+  +  ......++...++.+ .-..         -....++++||++|.|+.++
T Consensus       192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~---------~~~~~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNS---------KTDVKYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCH---------HHHEEEEECBTTTTBTTSSC
T ss_pred             cCCCccccHHHHHHHHHHHHHHHHHhcCCCc---------cCCceEEecccccccccccc
Confidence            996532  1  001122344444433 1000         00124788999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.12  E-value=2.9e-10  Score=94.13  Aligned_cols=107  Identities=15%  Similarity=0.085  Sum_probs=60.4

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDL  198 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D~  198 (293)
                      .+.++||+|..........+        ....+.+++|+|...........    .+...+.+   ...+.++++||+|+
T Consensus        55 ~~~i~Dt~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~i~~v~nK~Dl  122 (199)
T 2f9l_A           55 KAQIWDTAGQERYRRITSAY--------YRGAVGALLVYDIAKHLTYENVE----RWLKELRDHADSNIVIMLVGNKSDL  122 (199)
T ss_dssp             EEEEEECSSGGGTTCCCHHH--------HTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEECCCchhhhhhhHHH--------HhcCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCeEEEEEECccc
Confidence            46689999954321111111        12467789999987654322110    01111111   13467899999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+....  .....+...+.  |..             .++.+|++++.+++++..++.+
T Consensus       123 ~~~~~~--~~~~a~~l~~~--~~~-------------~~~d~Sal~~~~i~~l~~~l~~  164 (199)
T 2f9l_A          123 RHLRAV--PTDEARAFAEK--NNL-------------SFIETSALDSTNVEEAFKNILT  164 (199)
T ss_dssp             GGGCCS--CHHHHHHHHHH--TTC-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccCc--CHHHHHHHHHH--cCC-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence            754321  23344444432  222             2456899999999988887754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.12  E-value=1.1e-09  Score=104.31  Aligned_cols=71  Identities=17%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      .+..+.||||||..+.....        ......+|.+|+|+|+..........     +.....+...+.++++||+|+
T Consensus        80 ~~~~i~liDTPG~~df~~~~--------~~~l~~aD~~IlVvDa~~g~~~~t~~-----~~~~~~~~~ipiivviNK~Dl  146 (529)
T 2h5e_A           80 HDCLVNLLDTPGHEDFSEDT--------YRTLTAVDCCLMVIDAAKGVEDRTRK-----LMEVTRLRDTPILTFMNKLDR  146 (529)
T ss_dssp             TTEEEEEECCCCSTTCCHHH--------HHGGGGCSEEEEEEETTTCSCHHHHH-----HHHHHTTTTCCEEEEEECTTS
T ss_pred             CCeEEEEEECCCChhHHHHH--------HHHHHHCCEEEEEEeCCccchHHHHH-----HHHHHHHcCCCEEEEEcCcCC
Confidence            34678999999987643322        22335789999999998643222110     122333346788999999999


Q ss_pred             CCCC
Q 022736          199 VSPE  202 (293)
Q Consensus       199 ~~~~  202 (293)
                      ....
T Consensus       147 ~~~~  150 (529)
T 2h5e_A          147 DIRD  150 (529)
T ss_dssp             CCSC
T ss_pred             cccc
Confidence            8654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.08  E-value=3.9e-10  Score=110.69  Aligned_cols=147  Identities=16%  Similarity=0.136  Sum_probs=77.8

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .+++.++|+|.+|+|||||+++|+... .-.+.+-+  +.|. ...|...... .      ..+.+...+.++.      
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v--~~~~-~~~d~~~~E~-~------~giTi~~~~~~~~------   73 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGA-ATMDFMEQER-E------RGITITAAVTTCF------   73 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC--------------------------------------CCEEEEE------
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCccccee--cCCc-eeccCchhhh-h------cccccccceEEEE------
Confidence            468889999999999999999998531 00011111  1111 0111100000 0      0011112222221      


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                               ..+.++.||||||..+......        .....+|.+|+|+|+..........     ......+...+
T Consensus        74 ---------~~~~~i~liDTPG~~df~~~~~--------~~l~~aD~~ilVvDa~~g~~~~t~~-----~~~~~~~~~~p  131 (691)
T 1dar_A           74 ---------WKDHRINIIDTPGHVDFTIEVE--------RSMRVLDGAIVVFDSSQGVEPQSET-----VWRQAEKYKVP  131 (691)
T ss_dssp             ---------ETTEEEEEECCCSSTTCHHHHH--------HHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCC
T ss_pred             ---------ECCeEEEEEECcCccchHHHHH--------HHHHHCCEEEEEEECCCCcchhhHH-----HHHHHHHcCCC
Confidence                     1245789999999876443332        2234689999999998643322210     12223445678


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      .++++||+|+...+     ...+.+.++...
T Consensus       132 ~ivviNKiD~~~~~-----~~~~~~~l~~~l  157 (691)
T 1dar_A          132 RIAFANKMDKTGAD-----LWLVIRTMQERL  157 (691)
T ss_dssp             EEEEEECTTSTTCC-----HHHHHHHHHHTT
T ss_pred             EEEEEECCCcccCC-----HHHHHHHHHHHh
Confidence            99999999998653     355555555443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.07  E-value=1.4e-10  Score=101.09  Aligned_cols=123  Identities=20%  Similarity=0.252  Sum_probs=66.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +...++++|.+|+|||||+|+|+.    .+...+....+++.    ....           ..+                
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~----~~~~~~~~~~~~t~----~~~~-----------~~~----------------   82 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIG----ERVVSISPFQSEGP----RPVM-----------VSR----------------   82 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT----SCCSCCCSSSCCCS----SCEE-----------EEE----------------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhC----CCcccccCCCCcce----eeEE-----------EEE----------------
Confidence            456788999999999999999994    33222233333211    0000           000                


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHH----HHHhhhcchhhccccccccEEEEEcccch-HHHHhhhcccCCchHHHHHH
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~----~~~~~~~~~~~~~~~~~d~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~qi  185 (293)
                            ...+..+.|+||||+.+...    ....+  ..++ ....+|++++|+|.... ....+.     .+...+.+.
T Consensus        83 ------~~~~~~l~iiDTpG~~~~~~~~~~~~~~i--~~~~-~~~~~d~il~v~~~d~~~~~~~~~-----~~~~~l~~~  148 (270)
T 1h65_A           83 ------SRAGFTLNIIDTPGLIEGGYINDMALNII--KSFL-LDKTIDVLLYVDRLDAYRVDNLDK-----LVAKAITDS  148 (270)
T ss_dssp             ------EETTEEEEEEECCCSEETTEECHHHHHHH--HHHT-TTCEECEEEEEEESSCCCCCHHHH-----HHHHHHHHH
T ss_pred             ------eeCCeEEEEEECCCCCCCccchHHHHHHH--HHHh-hcCCCCEEEEEEeCCCCcCCHHHH-----HHHHHHHHH
Confidence                  01345689999999865421    11111  0111 12368899999765431 111110     012222221


Q ss_pred             -h----ccCEEEEeCCCCCCCC
Q 022736          186 -A----FADVVILNKVDLVSPE  202 (293)
Q Consensus       186 -~----~a~iivlNK~D~~~~~  202 (293)
                       .    .+.++|+||+|+.+.+
T Consensus       149 ~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          149 FGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HCGGGGGGEEEEEECCSCCCGG
T ss_pred             hCcccccCEEEEEECcccCCcC
Confidence             1    4789999999997654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.06  E-value=3.3e-10  Score=102.85  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..+|.|+|+|.+|||||||+|+|+..
T Consensus        32 ~~lp~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           32 DSLPAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred             ccCCEEEEECCCCCcHHHHHHHHhCC
Confidence            47899999999999999999999963

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.03  E-value=2.4e-10  Score=99.16  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +...|+++|..|+|||||+|+|+.
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~   58 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIG   58 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456688999999999999999994

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.03  E-value=3.3e-09  Score=87.25  Aligned_cols=107  Identities=16%  Similarity=0.110  Sum_probs=60.1

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDL  198 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D~  198 (293)
                      .+.++||+|......+...        .....+.+++|+|......... ..   .+...+.+   ...+.++++||+|+
T Consensus        79 ~~~i~Dt~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~i~~v~nK~Dl  146 (191)
T 1oix_A           79 KAQIWDTAGLERYRAITSA--------YYRGAVGALLVYDIAKHLTYEN-VE---RWLKELRDHADSNIVIMLVGNKSDL  146 (191)
T ss_dssp             EEEEEEECSCCSSSCCCHH--------HHTTCCEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEECCCCcchhhhhHH--------HhhcCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECccc
Confidence            3457999997543221111        1123567899999876543211 00   01111111   23467899999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+....  .....++..+.  |..             .++.+|++++.+++++.+++.+
T Consensus       147 ~~~~~~--~~~~a~~l~~~--~~~-------------~~ld~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          147 RHLRAV--PTDEARAFAEK--NGL-------------SFIETSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             GGGCCS--CHHHHHHHHHH--TTC-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccc--CHHHHHHHHHH--cCC-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence            754321  23344444432  222             2456899999999999888754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.02  E-value=4.8e-10  Score=103.50  Aligned_cols=44  Identities=20%  Similarity=0.279  Sum_probs=33.9

Q ss_pred             eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.+.+++++|+....+....+.+ +|+|++|||||||+|.|+..
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsf~I-~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           11 YVGFANLPNQVYRKSVKRGFEFTL-MVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             ----CCCCCCTTTTTCC-CCCEEE-EEECCTTSSHHHHHHHHTTC
T ss_pred             cEEEEecceeECCEEEecCCCEEE-EEECCCCCcHHHHHHHHhCC
Confidence            488999999998877777776665 88999999999999999953

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=99.00  E-value=5.6e-10  Score=90.31  Aligned_cols=95  Identities=18%  Similarity=0.202  Sum_probs=60.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCcccc------chhhhhcCCCCcchhhhhhccCcceeec
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAMINEGEGGALVEEWVELANGCICCT  102 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~------d~~~~~~~~~~~~~~~~~~l~~gcicc~  102 (293)
                      ++++++|+|++|||||||+++|++.  ..|.+++++.++++. ..+      |...+...  |.  ..++...++|.||.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~-~diD~~~g~D~~r~~~a--Ga--~~v~~~s~~~~~~~   77 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG-GEPARPEGVDSVRHERA--GA--VATAVEGDGLLQLH   77 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------C--SEEEEEETTEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC-cccccCCChhHHHHHhc--CC--CeEEeccCCEEEEE
Confidence            5789999999999999999999875  458899999999874 323      33333321  11  23455678998887


Q ss_pred             cc--hhHHHHHHHHHhhcCCCCEEEEecCCC
Q 022736          103 VK--HSLVQALEQLVQRKERLDHILLETTGL  131 (293)
Q Consensus       103 ~~--~~l~~~l~~l~~~~~~~d~iiidt~G~  131 (293)
                      .+  +.-.+.+..++... ++|++|||+.|-
T Consensus        78 ~~~~~~~~~~~~~ll~~~-~~D~vlVEg~~~  107 (169)
T 1xjc_A           78 LRRPLWRLDDVLALYAPL-RLDLVLVEGYKQ  107 (169)
T ss_dssp             ECCSCCCHHHHHHHHGGG-CCSEEEEECCTT
T ss_pred             ecccccchHHHHHHHHhc-CCCEEEEeCCCC
Confidence            63  11123344445444 799999999984

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.98  E-value=1e-09  Score=111.30  Aligned_cols=116  Identities=20%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D  197 (293)
                      .+..+.||||||..+...        ........+|.+|+|+|+.........     ++...+.+...+ .++++||+|
T Consensus       357 ~~~kI~IIDTPGHedF~~--------~mi~gas~AD~aILVVDAtdGv~~QTr-----EhL~ll~~lgIP~IIVVINKiD  423 (1289)
T 3avx_A          357 PTRHYAHVDCPGHADYVK--------NMITGAAQMDGAILVVAATDGPMPQTR-----EHILLGRQVGVPYIIVFLNKCD  423 (1289)
T ss_dssp             SSCEEEEEECCCHHHHHH--------HHHHTSCCCSEEEEEEETTTCSCTTHH-----HHHHHHHHHTCSCEEEEEECCT
T ss_pred             CCEEEEEEECCChHHHHH--------HHHHHHhhCCEEEEEEcCCccCcHHHH-----HHHHHHHHcCCCeEEEEEeecc
Confidence            346789999999654221        122344578999999999864321110     122344556677 478999999


Q ss_pred             CCCCCCC-cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc--------chhhhhhhhhhh
Q 022736          198 LVSPERS-GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA--------THVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~-~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~--------~~~~~l~~~l~~  257 (293)
                      +.+..++ .....++.+.++.++..          -...+++++||++|        +|+.+|.+++..
T Consensus       424 Lv~d~e~le~i~eEi~elLk~~G~~----------~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          424 MVDDEELLELVEMEVRELLSQYDFP----------GDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHTTSC----------TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHhcccc----------ccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence            9863210 00113344445444310          01135789999999        567777777755

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.97  E-value=4e-09  Score=97.58  Aligned_cols=149  Identities=19%  Similarity=0.255  Sum_probs=81.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec--cch
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VKH  105 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~~~  105 (293)
                      .+..+++++|++||||||++..|...  ..|.++.++..|... .+.-..+-..+          . ..|.-+..  ...
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r-~~a~eqL~~~~----------~-~~gv~~~~~~~~~  162 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR-PAAYDQLLQLG----------N-QIGVQVYGEPNNQ  162 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC-HHHHHHHHHHH----------H-TTTCCEECCTTCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc-hhHHHHHHHHH----------H-hcCCceeeccccC
Confidence            35678999999999999999999763  458899999988653 11100000000          0 00111111  011


Q ss_pred             hHHHHHHHHHhh--cCCCCEEEEecCCCCC---cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736          106 SLVQALEQLVQR--KERLDHILLETTGLAN---PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE  180 (293)
Q Consensus       106 ~l~~~l~~l~~~--~~~~d~iiidt~G~~~---~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~  180 (293)
                      +........+..  ..++|++||||||...   .......+.  . +......+.+++|+|+........       ...
T Consensus       163 dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~--~-i~~~~~pd~vlLVlDa~~gq~a~~-------~a~  232 (433)
T 3kl4_A          163 NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMK--E-MYDVLKPDDVILVIDASIGQKAYD-------LAS  232 (433)
T ss_dssp             CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHH--H-HHHHHCCSEEEEEEEGGGGGGGHH-------HHH
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHH--H-HHHhhCCcceEEEEeCccchHHHH-------HHH
Confidence            111111111111  2479999999999533   222222211  1 112234578999999986532211       122


Q ss_pred             HHHHHhccCEEEEeCCCCCC
Q 022736          181 AIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       181 ~~~qi~~a~iivlNK~D~~~  200 (293)
                      .+.+.-....+|+||+|...
T Consensus       233 ~f~~~~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          233 RFHQASPIGSVIITKMDGTA  252 (433)
T ss_dssp             HHHHHCSSEEEEEECGGGCS
T ss_pred             HHhcccCCcEEEEecccccc
Confidence            33333356899999999764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.96  E-value=1.6e-10  Score=104.97  Aligned_cols=42  Identities=21%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             EEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +.+.++...+..+.......+. ++|+|.+|+|||||+|+|..
T Consensus        18 v~~~~l~~~~~~k~~~~~~~~~-I~vvG~~g~GKSTLln~L~~   59 (361)
T 2qag_A           18 VGFANLPNQVHRKSVKKGFEFT-LMVVGESGLGKSTLINSLFL   59 (361)
T ss_dssp             ---CCHHHHHHTHHHHHCCEEC-EEECCCTTSCHHHHHHHHTT
T ss_pred             EEeccchHHhCCeeecCCCCEE-EEEEcCCCCCHHHHHHHHhC
Confidence            5667777776665444443333 57899999999999999974

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.96  E-value=6.7e-09  Score=102.08  Aligned_cols=142  Identities=15%  Similarity=0.097  Sum_probs=76.4

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .+++.++|+|..|+|||||+++|+.... -.+..  .-+.|. ...|......       +..+.+...+.+|...+.- 
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g--~v~~g~-~~~D~~~~E~-------~rgiTi~~~~~~~~~~~~~-   76 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG--EVHDGA-ATMDWMEQEQ-------ERGITITSAATTAFWSGMA-   76 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--ccCCCc-eeecChhhHH-------hcCceeeeceEEEEECCcc-
Confidence            4577899999999999999999985310 00000  001121 1111111100       0011222333333322110 


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                             ......++.||||||..+......        .....+|.+|+|+|+..........     ......+...+
T Consensus        77 -------~~~~~~~i~liDTPG~~df~~~~~--------~~l~~aD~aIlVvDa~~gv~~qt~~-----~~~~~~~~~ip  136 (704)
T 2rdo_7           77 -------KQYEPHRINIIDTPGHVDFTIEVE--------RSMRVLDGAVMVYCAVGGVQPQSET-----VWRQANKYKVP  136 (704)
T ss_pred             -------ccCCceeEEEEeCCCccchHHHHH--------HHHHHCCEEEEEEeCCCCCcHHHHH-----HHHHHHHcCCC
Confidence                   012347889999999876433221        2234679999999998654322110     11223334578


Q ss_pred             CEEEEeCCCCCCCC
Q 022736          189 DVVILNKVDLVSPE  202 (293)
Q Consensus       189 ~iivlNK~D~~~~~  202 (293)
                      .++++||+|+...+
T Consensus       137 ~ilviNKiD~~~~~  150 (704)
T 2rdo_7          137 RIAFVNKMDRMGAN  150 (704)
T ss_pred             EEEEEeCCCccccc
Confidence            89999999987653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.94  E-value=1.5e-09  Score=96.11  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             ccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           15 DETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++|+.+..+....+.+ +|+|++|||||||+|.|..
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I-~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             ----------------CEEE-EEEEETTSSHHHHHHHHHC
T ss_pred             CCCcceECCEEEEcCCCEEE-EEECCCCCCHHHHHHHHhC
Confidence            36677888877777766665 8899999999999999883

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.6e-09  Score=93.49  Aligned_cols=84  Identities=14%  Similarity=0.046  Sum_probs=49.3

Q ss_pred             ccccEEEEEcccch--HHHHhhhcccCCchHHH-H---HHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736          152 RLDSIITVVDAKNL--LFQIDKYRHLSSYPEAI-H---QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI  225 (293)
Q Consensus       152 ~~d~vi~vvDa~~~--~~~~~~~~~~~~~~~~~-~---qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~  225 (293)
                      .+|++|+|+|+++.  ..... ..   .+...+ .   ....+.++|.||+|+.+..    ..+...+..+... .    
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~-~~---~~l~~i~~~~~~~~~piilV~NK~Dl~~~~----~v~~~~~~~~~~~-~----  228 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDD-QL---KFVSNLYNQLAKTKKPIVVVLTKCDEGVER----YIRDAHTFALSKK-N----  228 (255)
T ss_dssp             ECCEEEEEEECBC----CHHH-HH---HHHHHHHHHHHHTTCCEEEEEECGGGBCHH----HHHHHHHHHHTSS-S----
T ss_pred             cCCEEEEEEECCCCchhhHHH-HH---HHHHHHHHHhccCCCCEEEEEEcccccccH----HHHHHHHHHHhcC-C----
Confidence            47999999999764  21111 00   011111 1   1246789999999996532    2233333322210 1    


Q ss_pred             EeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          226 RSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       226 ~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                               ..++.+||+++.|++++..++.+
T Consensus       229 ---------~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          229 ---------LQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             ---------CCEEECBTTTTBSHHHHHHHHHH
T ss_pred             ---------CeEEEEECCCCCCHHHHHHHHHH
Confidence                     24678999999999999888754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.93  E-value=1.4e-10  Score=105.73  Aligned_cols=123  Identities=14%  Similarity=0.110  Sum_probs=73.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .++++|.+|+|||||+|+|+... ...+.+.+++.+|+|.......                                  
T Consensus       164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~----------------------------------  209 (369)
T 3ec1_A          164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP----------------------------------  209 (369)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE----------------------------------
T ss_pred             cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE----------------------------------
Confidence            47889999999999999999531 0113455677777633211100                                  


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhc---cccccccEEEEEccc--chHHHHhhhcccCCchHHHHHHhc
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLE---SAVRLDSIITVVDAK--NLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~---~~~~~d~vi~vvDa~--~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                            -+.++.++||||+..+..+...+. ...+.   ...+++.+++++|+.  .+...+..       ...+.....
T Consensus       210 ------~~~~~~liDtPG~~~~~~~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~  275 (369)
T 3ec1_A          210 ------LESGATLYDTPGIINHHQMAHFVD-ARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRR  275 (369)
T ss_dssp             ------CSTTCEEEECCSCCCCSSGGGGSC-TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSE
T ss_pred             ------eCCCeEEEeCCCcCcHHHHHHHHh-HHHHHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCc
Confidence                  112368999999987654433221 12222   225788999999994  22221111       111222345


Q ss_pred             cCEEEEeCCCCCCCCCC
Q 022736          188 ADVVILNKVDLVSPERS  204 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~  204 (293)
                      +.++++||.|.+...+.
T Consensus       276 ~~~~v~~k~d~~~~~~~  292 (369)
T 3ec1_A          276 SFVCYMANELTVHRTKL  292 (369)
T ss_dssp             EEEEEECTTSCEEEEEG
T ss_pred             eEEEEecCCcccccccH
Confidence            78999999999876543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.90  E-value=4.8e-09  Score=102.54  Aligned_cols=67  Identities=13%  Similarity=0.092  Sum_probs=43.3

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      ...+.|+||||..+.....        ......+|.+++|+|+..........     ......+...+.++++||+|+.
T Consensus        73 ~~~~nliDTpG~~~f~~~~--------~~~l~~ad~~ilVvD~~~g~~~qt~~-----~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           73 GHRVFLLDAPGYGDFVGEI--------RGALEAADAALVAVSAEAGVQVGTER-----AWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             TEEEEEEECCCSGGGHHHH--------HHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEECGGGC
T ss_pred             CEEEEEEeCCCccchHHHH--------HHHHhhcCcEEEEEcCCcccchhHHH-----HHHHHHHccCCEEEEecCCchh
Confidence            4567899999987643222        12234678899999987654322210     2223344467889999999987

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.83  E-value=2.2e-10  Score=104.27  Aligned_cols=132  Identities=11%  Similarity=0.146  Sum_probs=75.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCC--CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHG--KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~--~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      .++++|.+|+|||||+|+|++...+  .+.+.+++.+|+|.......                                 
T Consensus       162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~---------------------------------  208 (368)
T 3h2y_A          162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP---------------------------------  208 (368)
T ss_dssp             CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE---------------------------------
T ss_pred             eEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE---------------------------------
Confidence            4788999999999999999964211  22455667777532211100                                 


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhh---ccccccccEEEEEccc--chHHHHhhhcccCCchHHHHHHh
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQL---ESAVRLDSIITVVDAK--NLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~---~~~~~~d~vi~vvDa~--~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                             -...+.++||||+.++..+...+. ...+   ....+++.+++++|+.  .+...+..       ...+....
T Consensus       209 -------~~~~~~liDtPG~~~~~~~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------~d~l~~~~  273 (368)
T 3h2y_A          209 -------LDEESSLYDTPGIINHHQMAHYVG-KQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-------FDYVSGGR  273 (368)
T ss_dssp             -------SSSSCEEEECCCBCCTTSGGGGSC-HHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSS
T ss_pred             -------ecCCeEEEeCCCcCcHHHHHHHhh-HHHHHHhccccccCceEEEEcCCCEEEEcceEE-------EEEecCCC
Confidence                   012368999999887654332111 1111   2235678899999984  22221111       11122234


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHh
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHE  217 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~  217 (293)
                      .+.++++||+|.+...+    .+...+.+++
T Consensus       274 ~~~~~v~nk~d~~~~~~----~~~~~~~~~~  300 (368)
T 3h2y_A          274 RAFTCHFSNRLTIHRTK----LEKADELYKN  300 (368)
T ss_dssp             EEEEEEECTTSCEEEEE----HHHHHHHHHH
T ss_pred             ceEEEEecCcccccccc----HHHHHHHHHH
Confidence            67899999999987653    3444444443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.74  E-value=7.5e-08  Score=84.98  Aligned_cols=149  Identities=18%  Similarity=0.222  Sum_probs=79.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcC-CCCcchhhhhhccCcceeeccchhH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      +..+++++|.+|+||||+++.|...  ..+.++.++..|+.. ......+-... ..++      .+-.+.. .....++
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r-~~a~~ql~~~~~~~~v------~v~~~~~-~~~p~~~  168 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR-PAALEQLQQLGQQIGV------PVYGEPG-EKDVVGI  168 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS-SHHHHHHHHHHHHHTC------CEECCTT-CCCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-HHHHHHHHHHhccCCe------EEEecCC-CCCHHHH
Confidence            4568889999999999999999763  458899999988753 11110000000 0000      0000000 0011122


Q ss_pred             H-HHHHHHHhhcCCCCEEEEecCCCCC--cH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736          108 V-QALEQLVQRKERLDHILLETTGLAN--PA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH  183 (293)
Q Consensus       108 ~-~~l~~l~~~~~~~d~iiidt~G~~~--~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~  183 (293)
                      . ..+..+.  ..++|++||||||...  .. .+...+.   .+......|.+++|+|+.........       ...+.
T Consensus       169 ~~~~l~~~~--~~~~D~ViIDTpg~~~~~~~~~l~~el~---~i~~~~~~d~vllVvda~~g~~~~~~-------~~~~~  236 (297)
T 1j8m_F          169 AKRGVEKFL--SEKMEIIIVDTAGRHGYGEEAALLEEMK---NIYEAIKPDEVTLVIDASIGQKAYDL-------ASKFN  236 (297)
T ss_dssp             HHHHHHHHH--HTTCSEEEEECCCSCCTTCHHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHHHH-------HHHHH
T ss_pred             HHHHHHHHH--hCCCCEEEEeCCCCcccccHHHHHHHHH---HHHHHhcCCEEEEEeeCCchHHHHHH-------HHHHH
Confidence            2 2333221  2678999999999765  32 2221110   01122457889999999754222111       11122


Q ss_pred             HHhcc-CEEEEeCCCCCC
Q 022736          184 QIAFA-DVVILNKVDLVS  200 (293)
Q Consensus       184 qi~~a-~iivlNK~D~~~  200 (293)
                      + ..+ ..+|+||+|...
T Consensus       237 ~-~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          237 Q-ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             H-TCTTEEEEEECGGGCT
T ss_pred             h-hCCCCEEEEeCCCCCc
Confidence            1 234 678999999753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.72  E-value=3.3e-07  Score=85.76  Aligned_cols=149  Identities=15%  Similarity=0.198  Sum_probs=75.2

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccch-hhhhcCCCCcchhhhhhccCcceeeccc---
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVK---  104 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~-~~~~~~~~~~~~~~~~~l~~gcicc~~~---  104 (293)
                      +--+++|+|++|||||||++.|...  ..+.++.+...+......++. .....           ...-|.+.....   
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~-----------r~~I~vV~Q~~~~~p  360 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQ-----------RNNIPVIAQHTGADS  360 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHH-----------HHTCCEECCSTTCCH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHH-----------hcCceEEecccCcCH
Confidence            4458999999999999999999763  345677666555431000000 00000           000011111110   


Q ss_pred             -hhHHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhh-cchhhcc--ccccccEEEEEcccchHHHHhhhcccCCch
Q 022736          105 -HSLVQALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYP  179 (293)
Q Consensus       105 -~~l~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~-~~~~~~~--~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~  179 (293)
                       ..+.+.+....  ..++|++||||+|.... ..+...+. .....+.  ....+-+++++|+......+..       .
T Consensus       361 ~~tV~e~l~~a~--~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~-------a  431 (503)
T 2yhs_A          361 ASVIFDAIQAAK--ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ-------A  431 (503)
T ss_dssp             HHHHHHHHHHHH--HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH-------H
T ss_pred             HHHHHHHHHHHH--hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH-------H
Confidence             01222222211  25689999999997543 33332211 0000010  0123467889999876543321       1


Q ss_pred             HHHHHHhccCEEEEeCCCCC
Q 022736          180 EAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       180 ~~~~qi~~a~iivlNK~D~~  199 (293)
                      ..+.+.-..+.+|+||.|..
T Consensus       432 k~f~~~~~itgvIlTKLD~t  451 (503)
T 2yhs_A          432 KLFHEAVGLTGITLTKLDGT  451 (503)
T ss_dssp             HHHHHHTCCSEEEEECGGGC
T ss_pred             HHHHhhcCCCEEEEEcCCCc
Confidence            22232223578999999964

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.71  E-value=4.3e-08  Score=93.64  Aligned_cols=137  Identities=15%  Similarity=0.099  Sum_probs=75.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCC-CeEEEEEcC-CCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~-~~vavv~~d-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      |+.-++|+|-.++|||||..+||....- .+.+-+... .+.....|..-.+.       +--+.+...++.|.      
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~Er-------eRGITI~s~~~~~~------   96 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMER-------ERGISVTTSVMQFP------   96 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC---------------------------CTTTEEEEE------
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHH-------HCCCcEeeceEEEE------
Confidence            6788999999999999999999853100 000000000 00000011111110       01122223333332      


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                               +.+..+-||||||..+...-.        .+...-+|++|+||||..+.......     ......+...|
T Consensus        97 ---------~~~~~iNlIDTPGHvDF~~Ev--------~raL~~~DgAvlVvda~~GV~~qT~~-----v~~~a~~~~lp  154 (548)
T 3vqt_A           97 ---------YRDRVVNLLDTPGHQDFSEDT--------YRVLTAVDSALVVIDAAKGVEAQTRK-----LMDVCRMRATP  154 (548)
T ss_dssp             ---------ETTEEEEEECCCCGGGCSHHH--------HHHHHSCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCC
T ss_pred             ---------ECCEEEEEEeCCCcHHHHHHH--------HHHHHhcCceEEEeecCCCcccccHH-----HHHHHHHhCCc
Confidence                     345678899999977753222        23345689999999998776544321     23344556778


Q ss_pred             CEEEEeCCCCCCCC
Q 022736          189 DVVILNKVDLVSPE  202 (293)
Q Consensus       189 ~iivlNK~D~~~~~  202 (293)
                      -++++||+|....+
T Consensus       155 ~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          155 VMTFVNKMDREALH  168 (548)
T ss_dssp             EEEEEECTTSCCCC
T ss_pred             eEEEEecccchhcc
Confidence            99999999987654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.69  E-value=1.4e-07  Score=87.40  Aligned_cols=150  Identities=20%  Similarity=0.238  Sum_probs=80.2

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEEcCCCCccccchhh-hhcCCCCcchhhhhhccCcceeeccch
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAM-INEGEGGALVEEWVELANGCICCTVKH  105 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~-~~~vavv~~d~g~~~~~d~~~-~~~~~~~~~~~~~~~l~~gcicc~~~~  105 (293)
                      .+..+|+++|..|+||||++..|...  .. |+++.++..|+.....++... ... ..++.   +  +..+-  .....
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~-~~~l~---v--~~~~~--~~dp~  169 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAE-QVGVD---F--FPSDV--GQKPV  169 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHH-HHTCE---E--CCCCS--SSCHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcc-cCCee---E--EeCCC--CCCHH
Confidence            45678889999999999999999864  34 899999999986411111100 000 00000   0  00000  00111


Q ss_pred             hH-HHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736          106 SL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH  183 (293)
Q Consensus       106 ~l-~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~  183 (293)
                      ++ ...+..+.  ..++|++||||||.... ......+.   ........+.+++|+|+........       ....+.
T Consensus       170 ~i~~~~l~~~~--~~~~D~VIIDTpG~l~~~~~l~~~L~---~~~~~~~p~~vllVvda~~g~~~~~-------~~~~f~  237 (433)
T 2xxa_A          170 DIVNAALKEAK--LKFYDVLLVDTAGRLHVDEAMMDEIK---QVHASINPVETLFVVDAMTGQDAAN-------TAKAFN  237 (433)
T ss_dssp             HHHHHHHHHHH--HTTCSEEEEECCCCCTTCHHHHHHHH---HHHHHSCCSEEEEEEETTBCTTHHH-------HHHHHH
T ss_pred             HHHHHHHHHHH--hCCCCEEEEECCCcccccHHHHHHHH---HHHHhhcCcceeEEeecchhHHHHH-------HHHHHh
Confidence            22 22233221  25789999999996543 22332211   0112235677899999975432211       111121


Q ss_pred             HHhcc-CEEEEeCCCCCC
Q 022736          184 QIAFA-DVVILNKVDLVS  200 (293)
Q Consensus       184 qi~~a-~iivlNK~D~~~  200 (293)
                      . ..+ ..+|+||+|...
T Consensus       238 ~-~l~i~gvVlnK~D~~~  254 (433)
T 2xxa_A          238 E-ALPLTGVVLTKVDGDA  254 (433)
T ss_dssp             H-HSCCCCEEEECTTSSS
T ss_pred             c-cCCCeEEEEecCCCCc
Confidence            1 123 568999999754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.68  E-value=8.8e-09  Score=100.21  Aligned_cols=133  Identities=16%  Similarity=0.220  Sum_probs=77.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      +.-|+|+|-.++|||||..+|+.... -.+.+  .-+-|. ...|....+.       +.-+.+...++.|.        
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g--~v~~g~-~~~D~~~~Er-------eRGITI~s~~~~~~--------   63 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELG--SVDKGT-TRTDNTLLER-------QRGITIQTGITSFQ--------   63 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCS--SCCCSC-CSTTCSTTHH-------HHSSCSSCCCCCCB--------
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCcccc--ccccCC-cccCCcHHHH-------hCCCcEEeeeEEEE--------
Confidence            44578999999999999999985310 00000  001111 1112111111       11122233333332        


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                             +.+..+-||||||..+...-.        .....-+|++|+||||..+.......     ......+.+.|-+
T Consensus        64 -------~~~~~iNlIDTPGH~DF~~Ev--------~raL~~~DgavlVVDa~~GV~~qT~~-----v~~~a~~~~lp~i  123 (638)
T 3j25_A           64 -------WENTKVNIIDTPGHMDFLAEV--------YRSLSVLDGAILLISAKDGVQAQTRI-----LFHALRKMGIPTI  123 (638)
T ss_dssp             -------CSSCBCCCEECCCSSSTHHHH--------HHHHTTCSEEECCEESSCTTCSHHHH-----HHHHHHHHTCSCE
T ss_pred             -------ECCEEEEEEECCCcHHHHHHH--------HHHHHHhCEEEEEEeCCCCCcHHHHH-----HHHHHHHcCCCeE
Confidence                   345678899999988864333        23345689999999998765433221     2334456677899


Q ss_pred             EEEeCCCCCCCC
Q 022736          191 VILNKVDLVSPE  202 (293)
Q Consensus       191 ivlNK~D~~~~~  202 (293)
                      +++||+|....+
T Consensus       124 ~~INKmDr~~a~  135 (638)
T 3j25_A          124 FFINKIDQNGID  135 (638)
T ss_dssp             ECCEECCSSSCC
T ss_pred             EEEeccccccCC
Confidence            999999987754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.68  E-value=2.9e-07  Score=84.95  Aligned_cols=148  Identities=20%  Similarity=0.204  Sum_probs=79.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeecc---ch
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV---KH  105 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~---~~  105 (293)
                      +..+++++|+.|+||||++..|...  ..+.++.++..|+.. ......+-..+       +...+  ..+.+..   ..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r-~aa~~qL~~~~-------~~~gv--~v~~~~~~~~p~  166 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQLRLLG-------EKVGV--PVLEVMDGESPE  166 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC-HHHHHHHHHHH-------HHHTC--CEEECCTTCCHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC-chhHHHHHHhc-------ccCCc--cEEecCCCCCHH
Confidence            5668889999999999999999764  558899999988754 11111000000       00000  0011111   11


Q ss_pred             hH-HHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736          106 SL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH  183 (293)
Q Consensus       106 ~l-~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~  183 (293)
                      ++ ...+..+.  ..++|++||||||.... ......+.   .+......+.+++|+|+.........       ...+.
T Consensus       167 ~i~~~~l~~~~--~~~~DvVIIDTaG~l~~d~~l~~el~---~i~~~~~pd~vlLVvDa~tgq~av~~-------a~~f~  234 (425)
T 2ffh_A          167 SIRRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTGQEALSV-------ARAFD  234 (425)
T ss_dssp             HHHHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH-------HHHHH
T ss_pred             HHHHHHHHHHH--HCCCCEEEEcCCCcccccHHHHHHHH---HhhhccCCceEEEEEeccchHHHHHH-------HHHHH
Confidence            22 22232221  26789999999995542 22222110   01222356778999999754322211       11122


Q ss_pred             HHhccCEEEEeCCCCCC
Q 022736          184 QIAFADVVILNKVDLVS  200 (293)
Q Consensus       184 qi~~a~iivlNK~D~~~  200 (293)
                      .--....+|+||.|...
T Consensus       235 ~~l~i~GVIlTKlD~~~  251 (425)
T 2ffh_A          235 EKVGVTGLVLTKLDGDA  251 (425)
T ss_dssp             HHTCCCEEEEESGGGCS
T ss_pred             hcCCceEEEEeCcCCcc
Confidence            21124788999999653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.67  E-value=8.5e-09  Score=103.22  Aligned_cols=68  Identities=18%  Similarity=0.129  Sum_probs=43.7

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +..+.||||||..+......        .....+|++|+|+|+..........     ......+...+.++++||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~--------~~l~~aD~ailVvDa~~g~~~qt~~-----~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVT--------AALRVTDGALVVVDTIEGVCVQTET-----VLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHH--------HHHHTCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHH--------HHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCeEEEEECCCcc
Confidence            45688999999877543321        2235689999999998754322210     1112223356789999999986


Q ss_pred             C
Q 022736          200 S  200 (293)
Q Consensus       200 ~  200 (293)
                      .
T Consensus       164 ~  164 (842)
T 1n0u_A          164 L  164 (842)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.67  E-value=9e-09  Score=83.74  Aligned_cols=41  Identities=20%  Similarity=0.394  Sum_probs=34.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      .++|+++|+|++|||||||+++|++.  ..+.+++++.++++.
T Consensus         4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            4 TMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             CcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            35899999999999999999999875  457889999998864

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.61  E-value=5e-08  Score=88.18  Aligned_cols=103  Identities=21%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      -++|+|.+|+|||||+|+|+.    .+ +.+.+.++++...+...+                      ...+.-...|..
T Consensus         4 kI~IVG~pnvGKSTL~n~Lt~----~~-~~v~~~p~tTi~p~~g~v----------------------~~~~~r~~~l~~   56 (363)
T 1jal_A            4 KCGIVGLPNVGKSTLFNALTK----AG-IEAANYPFCTIEPNTGVV----------------------PMPDPRLDALAE   56 (363)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH----TC-------CCCCCCCCSSEE----------------------ECCCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC----CC-CcccCCCCceECceEEEE----------------------ecCCcccceeee
Confidence            478999999999999999995    33 345555554332221111                      011111222222


Q ss_pred             HHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc
Q 022736          114 LVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN  164 (293)
Q Consensus       114 l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~  164 (293)
                      +...  ..+..+.|+||||+.......+.+. ...+.....+|.+++|+|+..
T Consensus        57 ~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~-~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           57 IVKPERILPTTMEFVDIAGLVAGASKGEGLG-NKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHCCSEEECCEEEEEECCSCCTTHHHHGGGT-CCHHHHHHTCSEEEEEEECSC
T ss_pred             eecccceeeeEEEEEECCCCcccccccchHH-HHHHHHHHhcCeEEEEEecCC
Confidence            2211  0124689999999987654433322 333445578999999999975

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.61  E-value=7.3e-07  Score=79.44  Aligned_cols=154  Identities=16%  Similarity=0.203  Sum_probs=78.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-ec-c--
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CT-V--  103 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~-~--  103 (293)
                      .+..+++++|++|+||||++..|...  ..+.++.++..|+.. ......+......       ....+-.+. +. .  
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r-~~a~~ql~~~~~~-------~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR-AGATQQLEEWIKT-------RLNNKVDLVKANKLNA  174 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC-HHHHHHHHHHHTT-------TSCTTEEEECCSSTTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc-hhHHHHHHHHHhc-------cccCCceEEeCCCCCC
Confidence            45678999999999999999999763  458899998888743 1100000000000       000010111 10 0  


Q ss_pred             -c-hhHHHHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhh-cchhhc--cccccccEEEEEcccchHHHHhhhcccCC
Q 022736          104 -K-HSLVQALEQLVQRKERLDHILLETTGLANPA-PLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSS  177 (293)
Q Consensus       104 -~-~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~-~~~~~~--~~~~~d~vi~vvDa~~~~~~~~~~~~~~~  177 (293)
                       . ..+.+.+....  ..++|+|||||||..... ...+.+. ....+.  .....+.+++|+|+......+..      
T Consensus       175 ~p~~~~~~~l~~~~--~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~------  246 (320)
T 1zu4_A          175 DPASVVFDAIKKAK--EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQ------  246 (320)
T ss_dssp             CHHHHHHHHHHHHH--HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHH------
T ss_pred             CHHHHHHHHHHHHH--hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHH------
Confidence             0 01223333222  367999999999966532 2222110 001111  11236778999999854332221      


Q ss_pred             chHHHHHHhccCEEEEeCCCCCC
Q 022736          178 YPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       178 ~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      . ..+.+.-...-+|+||.|...
T Consensus       247 ~-~~~~~~~~i~GvVltk~d~~~  268 (320)
T 1zu4_A          247 A-EEFSKVADVSGIILTKMDSTS  268 (320)
T ss_dssp             H-HHHTTTSCCCEEEEECGGGCS
T ss_pred             H-HHHhhcCCCcEEEEeCCCCCC
Confidence            0 111111123568999999643

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=98.58  E-value=9.2e-08  Score=85.15  Aligned_cols=68  Identities=21%  Similarity=0.297  Sum_probs=39.9

Q ss_pred             CCEEEEecCCCCCcHH--H-HHhhhcchhhccccccccEEEEEcccch-HHHHhhhcccCCchHHHHHH-----hccCEE
Q 022736          121 LDHILLETTGLANPAP--L-ASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQI-----AFADVV  191 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~--~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~qi-----~~a~ii  191 (293)
                      ..+-|+||+|..+...  + ...+     +   ..++++|+|+|.+.. ......      +..++.++     ..+.++
T Consensus        46 v~LqIWDTAGQErf~~~~l~~~~y-----y---r~a~~~IlV~Ditd~~~~~~~~------l~~~l~~~~~~~~~ipill  111 (331)
T 3r7w_B           46 IDLAVMELPGQLNYFEPSYDSERL-----F---KSVGALVYVIDSQDEYINAITN------LAMIIEYAYKVNPSINIEV  111 (331)
T ss_dssp             SCEEEEECCSCSSSCCCSHHHHHH-----H---TTCSEEEEECCCSSCTTHHHHH------HHHHHHHHHHHCTTCEEEE
T ss_pred             EEEEEEECCCchhccchhhhhhhh-----c---cCCCEEEEEEECCchHHHHHHH------HHHHHHHHhhcCCCCcEEE
Confidence            4678999999765421  1 1111     1   457889999999864 111111      11222221     245688


Q ss_pred             EEeCCCCCCCC
Q 022736          192 ILNKVDLVSPE  202 (293)
Q Consensus       192 vlNK~D~~~~~  202 (293)
                      +.||+|+.+++
T Consensus       112 vgNK~DL~~~~  122 (331)
T 3r7w_B          112 LIHKVDGLSED  122 (331)
T ss_dssp             ECCCCCSSCSH
T ss_pred             EEECcccCchh
Confidence            88999998754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.58  E-value=1.1e-06  Score=77.87  Aligned_cols=152  Identities=16%  Similarity=0.168  Sum_probs=78.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      .+..+++++|++|+||||++..|...  ..+.++.++..|.-. ......+-...       +...+  ..+......+.
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r-~~a~eqL~~~~-------~~~gl--~~~~~~s~~~~  171 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-AAAIEQLKIWG-------ERVGA--TVISHSEGADP  171 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHHHHH-------HHHTC--EEECCSTTCCH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc-HHHHHHHHHHH-------HHcCC--cEEecCCccCH
Confidence            34568999999999999999999763  357889888877542 11100000000       00000  00001011111


Q ss_pred             ----HHHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhh-cchhhcc--ccccccEEEEEcccchHHHHhhhcccCCch
Q 022736          108 ----VQALEQLVQRKERLDHILLETTGLANPA-PLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYP  179 (293)
Q Consensus       108 ----~~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~-~~~~~~~--~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~  179 (293)
                          .+++....  ..++|++|+||||..... .+.+.+. ....+..  ....+.+++|+|+.........       .
T Consensus       172 ~~v~~~al~~a~--~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~-------a  242 (306)
T 1vma_A          172 AAVAFDAVAHAL--ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQ-------A  242 (306)
T ss_dssp             HHHHHHHHHHHH--HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHH-------H
T ss_pred             HHHHHHHHHHHH--hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHH-------H
Confidence                12233222  357899999999964332 2222111 0111110  1236678999999754332221       1


Q ss_pred             HHHHHHhccCEEEEeCCCCCC
Q 022736          180 EAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       180 ~~~~qi~~a~iivlNK~D~~~  200 (293)
                      ..+.+.....-+|+||.|...
T Consensus       243 ~~~~~~~~i~gvVlTk~D~~~  263 (306)
T 1vma_A          243 KIFKEAVNVTGIILTKLDGTA  263 (306)
T ss_dssp             HHHHHHSCCCEEEEECGGGCS
T ss_pred             HHHHhcCCCCEEEEeCCCCcc
Confidence            122222335789999999653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.54  E-value=6.5e-07  Score=78.91  Aligned_cols=145  Identities=19%  Similarity=0.175  Sum_probs=78.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchh
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      +..+++++|+.||||||++..|...   ..|+++.++..|+.. ......+-.. ...++..          ..+....+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r-~~a~eqL~~~~~~~gl~~----------~~~~~~~~  172 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR-IAAVEQLKTYAELLQAPL----------EVCYTKEE  172 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS-TTHHHHHHHHHTTTTCCC----------CBCSSHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc-chHHHHHHHHHHhcCCCe----------EecCCHHH
Confidence            4568999999999999999999763   358899999988743 1111111000 0001000          00111223


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                      +..++..    ..++|++|+||+|..... .....+.  ..+. ....+.+++|+|+............      .+..+
T Consensus       173 l~~al~~----~~~~dlvIiDT~G~~~~~~~~~~el~--~~l~-~~~~~~~~lVl~at~~~~~~~~~~~------~~~~l  239 (296)
T 2px0_A          173 FQQAKEL----FSEYDHVFVDTAGRNFKDPQYIDELK--ETIP-FESSIQSFLVLSATAKYEDMKHIVK------RFSSV  239 (296)
T ss_dssp             HHHHHHH----GGGSSEEEEECCCCCTTSHHHHHHHH--HHSC-CCTTEEEEEEEETTBCHHHHHHHTT------TTSSS
T ss_pred             HHHHHHH----hcCCCEEEEeCCCCChhhHHHHHHHH--HHHh-hcCCCeEEEEEECCCCHHHHHHHHH------HHhcC
Confidence            3333332    356899999999976432 2222111  1111 1224567889998765443332111      11111


Q ss_pred             hccCEEEEeCCCCCC
Q 022736          186 AFADVVILNKVDLVS  200 (293)
Q Consensus       186 ~~a~iivlNK~D~~~  200 (293)
                       ...-+|+||.|...
T Consensus       240 -~~~giVltk~D~~~  253 (296)
T 2px0_A          240 -PVNQYIFTKIDETT  253 (296)
T ss_dssp             -CCCEEEEECTTTCS
T ss_pred             -CCCEEEEeCCCccc
Confidence             24678899999754

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.51  E-value=3.3e-06  Score=74.30  Aligned_cols=148  Identities=19%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec---cch
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT---VKH  105 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~---~~~  105 (293)
                      +..+++++|..|+||||++..|...  ..+.++.++..|+.. ...... +..      ..+  ..+-..+.+.   ...
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~-~~~~~q-l~~------~~~--~~~l~~~~~~~~~~p~  166 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQ-LRL------LGE--KVGVPVLEVMDGESPE  166 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC-HHHHHH-HHH------HHH--HHTCCEEECCTTCCHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc-HhHHHH-HHH------hcc--cCCeEEEEcCCCCCHH
Confidence            4568889999999999999999763  457889998888753 111110 000      000  0000011111   111


Q ss_pred             hH-HHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736          106 SL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH  183 (293)
Q Consensus       106 ~l-~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~  183 (293)
                      ++ ..++..+.  ..++|++||||||.... ......+.  . +......+.+++|+|+.........       ...+.
T Consensus       167 ~l~~~~l~~~~--~~~~D~viiDtpp~~~~d~~~~~~l~--~-~~~~~~~~~~~lv~~~~~~~~~~~~-------~~~~~  234 (295)
T 1ls1_A          167 SIRRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELA--R-LKEVLGPDEVLLVLDAMTGQEALSV-------ARAFD  234 (295)
T ss_dssp             HHHHHHHHHHH--HHTCCEEEEECCCCSSCCHHHHHHHH--H-HHHHHCCSEEEEEEEGGGTHHHHHH-------HHHHH
T ss_pred             HHHHHHHHHHH--hCCCCEEEEeCCCCccccHHHHHHHH--H-HhhhcCCCEEEEEEeCCCcHHHHHH-------HHHHh
Confidence            22 22333332  24689999999985432 22222111  0 1111246778899998754222211       11112


Q ss_pred             HHhccCEEEEeCCCCCC
Q 022736          184 QIAFADVVILNKVDLVS  200 (293)
Q Consensus       184 qi~~a~iivlNK~D~~~  200 (293)
                      +--...-+|+||.|...
T Consensus       235 ~~~~i~givlnk~d~~~  251 (295)
T 1ls1_A          235 EKVGVTGLVLTKLDGDA  251 (295)
T ss_dssp             HHTCCCEEEEECGGGCS
T ss_pred             hcCCCCEEEEECCCCCc
Confidence            11123678999999654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.49  E-value=1.2e-06  Score=78.15  Aligned_cols=151  Identities=19%  Similarity=0.246  Sum_probs=77.2

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhh-cCCCCcchhhhhhccCcceeeccchh
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMIN-EGEGGALVEEWVELANGCICCTVKHS  106 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~-~~~~~~~~~~~~~l~~gcicc~~~~~  106 (293)
                      .+.-+++++|++||||||+++.|...  ..+.++.+...|... ......+-. ....++.   ++.-..+.   .....
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r-~~a~eql~~~~~~~gv~---~v~q~~~~---~p~~~  199 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR-AGAIEQLEEHAKRIGVK---VIKHSYGA---DPAAV  199 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS-TTHHHHHHHHHHHTTCE---EECCCTTC---CHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc-cchHHHHHHHHHHcCce---EEeccccC---CHHHH
Confidence            34568999999999999999999863  346678887766532 111000000 0000000   00000000   00001


Q ss_pred             HHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          107 LVQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       107 l~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                      ..+.+..-  ...+.+++++||+|.... ......+.   .+......|..++++|+.........       ...+.+.
T Consensus       200 v~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~---~i~ral~~de~llvLDa~t~~~~~~~-------~~~~~~~  267 (328)
T 3e70_C          200 AYDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMK---KIARVTKPNLVIFVGDALAGNAIVEQ-------ARQFNEA  267 (328)
T ss_dssp             HHHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH-------HHHHHHH
T ss_pred             HHHHHHHH--HhccchhhHHhhccchhHHHHHHHHHH---HHHHHhcCCCCEEEEecHHHHHHHHH-------HHHHHHh
Confidence            11222111  124678999999997542 22222221   01122346778999998765432221       1222323


Q ss_pred             hccCEEEEeCCCCC
Q 022736          186 AFADVVILNKVDLV  199 (293)
Q Consensus       186 ~~a~iivlNK~D~~  199 (293)
                      .....+++||.|..
T Consensus       268 ~~it~iilTKlD~~  281 (328)
T 3e70_C          268 VKIDGIILTKLDAD  281 (328)
T ss_dssp             SCCCEEEEECGGGC
T ss_pred             cCCCEEEEeCcCCc
Confidence            35679999999964

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.48  E-value=7.9e-08  Score=83.68  Aligned_cols=22  Identities=41%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..++|+|++|||||||+|.|..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            3588999999999999999985

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.46  E-value=1.3e-07  Score=86.27  Aligned_cols=104  Identities=19%  Similarity=0.064  Sum_probs=46.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      ..++|+|.+|+|||||+|+|.    +.++ .+.+.+++|.......                    +.+  .+.-...+.
T Consensus        23 ~kvgIVG~pnvGKSTL~n~Lt----g~~~-~~~~~p~tTi~p~~g~--------------------v~v--~~~r~~~l~   75 (396)
T 2ohf_A           23 LKIGIVGLPNVGKSTFFNVLT----NSQA-SAENFPFCTIDPNESR--------------------VPV--PDERFDFLC   75 (396)
T ss_dssp             CCEEEECCSSSSHHHHHHHHH----C--------------CCSEEE--------------------EEC--CCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH----CCCc-cccCCCccccCceeEE--------------------EEE--CCccceeec
Confidence            348899999999999999999    4444 4555555432221111                    111  111111112


Q ss_pred             HHHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc
Q 022736          113 QLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN  164 (293)
Q Consensus       113 ~l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~  164 (293)
                      .....  ..+..+.++||||+.......+.+ ....+.....+|.+++|+|+..
T Consensus        76 ~~~~p~~~~~~~i~lvDtpGl~~~as~~~gl-g~~~l~~ir~aD~Il~VvD~~~  128 (396)
T 2ohf_A           76 QYHKPASKIPAFLNVVDIAGLVKGAHNGQGL-GNAFLSHISACDGIFHLTRAFE  128 (396)
T ss_dssp             HHHCCSEEECCEEEEEECCC------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred             cccCcccccccccEEEECCCcccccchhhHH-HHHHHHHHHhcCeEEEEEecCC
Confidence            11110  013458999999987654432211 1233455578999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.41  E-value=3.7e-07  Score=84.12  Aligned_cols=42  Identities=24%  Similarity=0.266  Sum_probs=27.0

Q ss_pred             eEEEccccccccCcccCC-------CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHEND-------DVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-------~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++.+ ++.|+..+ +.       ...++-++|+|++|||||||+|.|+.
T Consensus        16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred             eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence            344555 56666543 22       22344489999999999999999994

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.39  E-value=2.8e-07  Score=90.72  Aligned_cols=142  Identities=14%  Similarity=0.108  Sum_probs=75.1

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .++.-+.|+|-.++|||||..+|+.... -.+.+-+  +-|. ...|....+.       +.-+.+...++.+..++.- 
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v--~~~~-~~~D~~~~E~-------eRGITI~s~~~s~~~~~~~-   79 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEV--HDGA-ATTDWMVQEQ-------ERGITITSAAVTTFWKGSR-   79 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC----------------------------------CCEEEEEECCTT-
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCcee--cCCC-ccCCChHHHH-------HcCCeEEeeeEEEEeccCc-
Confidence            4677899999999999999999985310 0000000  0111 1112111111       0112222333333221100 


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                             ...+++.+-||||||..+...-.        .....-+|++|+|||+..+.......     ......+...+
T Consensus        80 -------~~~~~~~iNlIDTPGHvDF~~Ev--------~~aLr~~DgavlvVDaveGV~~qT~~-----v~~~a~~~~lp  139 (709)
T 4fn5_A           80 -------GQYDNYRVNVIDTPGHVDFTIEV--------ERSLRVLDGAVVVFCGTSGVEPQSET-----VWRQANKYGVP  139 (709)
T ss_dssp             -------SCSCCEEEEEECCCSCTTCHHHH--------HHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHHTCC
T ss_pred             -------CCCCCEEEEEEeCCCCcccHHHH--------HHHHHHhCeEEEEEECCCCCchhHHH-----HHHHHHHcCCC
Confidence                   00124567899999988864332        22335689999999998765443321     22334555778


Q ss_pred             CEEEEeCCCCCCCC
Q 022736          189 DVVILNKVDLVSPE  202 (293)
Q Consensus       189 ~iivlNK~D~~~~~  202 (293)
                      -++++||+|....+
T Consensus       140 ~i~~iNKiDr~~a~  153 (709)
T 4fn5_A          140 RIVYVNKMDRQGAN  153 (709)
T ss_dssp             EEEEEECSSSTTCC
T ss_pred             eEEEEccccccCcc
Confidence            99999999997654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.33  E-value=8.7e-07  Score=81.49  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +.++++|+|++|||||||+|.|+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            345899999999999999999995

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.28  E-value=6.3e-07  Score=78.43  Aligned_cols=35  Identities=34%  Similarity=0.337  Sum_probs=22.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~   70 (293)
                      ...++++|.+|+|||||+|+|+    +.+.+.+.+.+|+
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~----~~~~~~~~~~~g~  154 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLA----KKNIAKTGDRPGI  154 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH----TSCCC--------
T ss_pred             CceEEEEecCCCchHHHHHHHh----cCceeecCCCCCe
Confidence            3457889999999999999999    5665666666765

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.22  E-value=4.9e-07  Score=82.01  Aligned_cols=43  Identities=16%  Similarity=0.123  Sum_probs=27.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN  164 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~  164 (293)
                      ..+.|+||||+.......+.+ ....+.....+|.+++|+|+..
T Consensus        69 ~~i~lvDtpGl~~~a~~~~~l-g~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           69 THVEFVDIAGLVKGAHKGEGL-GNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CEEEEEECCSCCCCCCSSSCT-THHHHHHHHTCSEEEEEEECCC
T ss_pred             ceEEEEECCCccccccccchH-HHHHHHHHHhCCEEEEEEECCC
Confidence            468999999987542211111 1122334567899999999974

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.21  E-value=1.5e-07  Score=85.93  Aligned_cols=106  Identities=23%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      -..++|+|++|||||||+|.|+.    .+++.+.+.+++++..+...+.                    +  .+.-...+
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg----~~~a~~~~~p~tTi~p~~G~v~--------------------v--~~~r~~~l   73 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITK----SVLGNPANYPYATIDPEEAKVA--------------------V--PDERFDWL   73 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHH----STTTSTTCCSSCCCCTTEEEEE--------------------E--CCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC----CCcccccCCCceeecceeeeee--------------------e--CCcchhhh
Confidence            45789999999999999999994    3322344555542221111110                    0  00001112


Q ss_pred             HHHHhhc--CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc
Q 022736          112 EQLVQRK--ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN  164 (293)
Q Consensus       112 ~~l~~~~--~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~  164 (293)
                      ..+....  -+..+.++|+||+.......+.+ ....+.....+|.+++|+|+..
T Consensus        74 ~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L-~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           74 CEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL-GNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             HHHHCCSEEECEEEEEECTGGGCCCCCSSSSS-CHHHHHHHTTCSEEEEEEECCC
T ss_pred             hhhcccccccCcceEEEeccccccCCcHHHHH-HHHHHHHHHHHHHHHHHHhccc
Confidence            2222110  01247899999976543221111 1122344457889999999853

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.20  E-value=7.8e-05  Score=65.74  Aligned_cols=149  Identities=16%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccc-cch-hhhhcCCCCcchhhhhhccCcceeeccch-
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG-VER-AMINEGEGGALVEEWVELANGCICCTVKH-  105 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~-~d~-~~~~~~~~~~~~~~~~~l~~gcicc~~~~-  105 (293)
                      +.-+++|+|+.||||||+++.|...  ..+.++.+...|... .. ... ......           ..-|.+...... 
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r-~~a~~ql~~~~~~-----------~~i~~v~q~~~~~  168 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR-AAGGTQLSEWGKR-----------LSIPVIQGPEGTD  168 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS-TTTTHHHHHHHHH-----------HTCCEECCCTTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC-hhHHHHHHHHHHh-----------cCceEEEeCCCCC
Confidence            4558999999999999999999763  446677777666432 11 000 000000           000111100000 


Q ss_pred             ---hHHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcc-hhhc--cccccccEEEEEcccchHHHHhhhcccCCc
Q 022736          106 ---SLVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLD-DQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSY  178 (293)
Q Consensus       106 ---~l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~-~~~~--~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~  178 (293)
                         -..+.+..-.  ..+.+++++||+|..+ .......+... ..+.  -....+.+++++|+.........       
T Consensus       169 p~~~v~~~v~~~~--~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~-------  239 (304)
T 1rj9_A          169 SAALAYDAVQAMK--ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ-------  239 (304)
T ss_dssp             HHHHHHHHHHHHH--HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH-------
T ss_pred             HHHHHHHHHHHHH--hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHH-------
Confidence               0112222111  2357899999999654 22222221100 0010  11234557889999876543322       


Q ss_pred             hHHHHHHhccCEEEEeCCCCCC
Q 022736          179 PEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       179 ~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      ...+.+.....++++||.|...
T Consensus       240 ~~~~~~~~~~t~iivTh~d~~a  261 (304)
T 1rj9_A          240 AKKFHEAVGLTGVIVTKLDGTA  261 (304)
T ss_dssp             HHHHHHHHCCSEEEEECTTSSC
T ss_pred             HHHHHHHcCCcEEEEECCcccc
Confidence            1122222346899999998653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=98.18  E-value=2.4e-05  Score=64.27  Aligned_cols=148  Identities=15%  Similarity=0.141  Sum_probs=82.2

Q ss_pred             eEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        33 pvi~i~-G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ++|.|+ +..|+||||+.-.|...  ..|+++.++..|+..  +.. ..+.....+.           -+.......+..
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~--~~~-~~~~~~~~~~-----------~~~~~~~~~l~~   67 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM--SLT-NWSKAGKAAF-----------DVFTAASEKDVY   67 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC--HHH-HHHTTSCCSS-----------EEEECCSHHHHH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC--CHH-HHHhcCCCCC-----------cEEecCcHHHHH
Confidence            456555 77889999999888663  468999999999864  111 1111111110           001111245555


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh---
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---  186 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~---  186 (293)
                      .+..+.   ..+|++|||||+...... ..         .....|.++.++.+.... ..-..     ....+.++.   
T Consensus        68 ~l~~l~---~~yD~viiD~~~~~~~~~-~~---------~l~~ad~viiv~~~~~~~-~~~~~-----~~~~l~~~~~~~  128 (206)
T 4dzz_A           68 GIRKDL---ADYDFAIVDGAGSLSVIT-SA---------AVMVSDLVIIPVTPSPLD-FSAAG-----SVVTVLEAQAYS  128 (206)
T ss_dssp             THHHHT---TTSSEEEEECCSSSSHHH-HH---------HHHHCSEEEEEECSCTTT-HHHHH-----HHHHHHTTSCGG
T ss_pred             HHHHhc---CCCCEEEEECCCCCCHHH-HH---------HHHHCCEEEEEecCCHHH-HHHHH-----HHHHHHHHHHhC
Confidence            555542   468999999998663211 11         123467789999886543 21100     122232221   


Q ss_pred             --ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736          187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEI  218 (293)
Q Consensus       187 --~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l  218 (293)
                        ....+|+||++.-...     ...+.+.++.+
T Consensus       129 ~~~~~~vv~N~~~~~~~~-----~~~~~~~l~~~  157 (206)
T 4dzz_A          129 RKVEARFLITRKIEMATM-----LNVLKESIKDT  157 (206)
T ss_dssp             GCCEEEEEECSBCTTEEE-----EHHHHHHHHHH
T ss_pred             CCCcEEEEEeccCCCchH-----HHHHHHHHHHc
Confidence              1238999999854321     24455556554

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=98.17  E-value=5.1e-05  Score=63.08  Aligned_cols=141  Identities=13%  Similarity=0.076  Sum_probs=78.5

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      .+..+..|+||||+.-.|...  ..| ++.++..|+..  +.. ..+.. .+         ++...+.    .+   .+.
T Consensus         4 ~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~--~~~-~~~~~-~~---------l~~~vi~----~~---~l~   62 (209)
T 3cwq_A            4 TVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR--SAT-GWGKR-GS---------LPFKVVD----ER---QAA   62 (209)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC--HHH-HHHHH-SC---------CSSEEEE----GG---GHH
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC--CHH-HHhcC-CC---------CCcceeC----HH---HHH
Confidence            345688999999999998763  558 99999999864  111 11110 00         1111111    11   233


Q ss_pred             HHHhhcCCCCEEEEecCCC-CCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCE
Q 022736          113 QLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADV  190 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~-~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~i  190 (293)
                      .+   ...+|++|||||+. ..+....          .....|.+|.++.+....-..-.     .+...+.++ .....
T Consensus        63 ~l---~~~yD~viiD~p~~~~~~~~~~----------~l~~aD~viiv~~~~~~~~~~~~-----~~~~~l~~~~~~~~~  124 (209)
T 3cwq_A           63 KY---APKYQNIVIDTQARPEDEDLEA----------LADGCDLLVIPSTPDALALDALM-----LTIETLQKLGNNRFR  124 (209)
T ss_dssp             HH---GGGCSEEEEEEECCCSSSHHHH----------HHHTSSEEEEEECSSHHHHHHHH-----HHHHHHHHTCSSSEE
T ss_pred             Hh---hhcCCEEEEeCCCCcCcHHHHH----------HHHHCCEEEEEecCCchhHHHHH-----HHHHHHHhccCCCEE
Confidence            33   25689999999996 5542211          12356788999988653221110     022233332 33467


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEI  218 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~l  218 (293)
                      +|+|+.+.-...    ....+.+.++++
T Consensus       125 vv~N~~~~~~~~----~~~~~~~~l~~~  148 (209)
T 3cwq_A          125 ILLTIIPPYPSK----DGDEARQLLTTA  148 (209)
T ss_dssp             EEECSBCCTTSC----HHHHHHHHHHHT
T ss_pred             EEEEecCCccch----HHHHHHHHHHHc
Confidence            899999865311    124555666653

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=98.07  E-value=3.3e-05  Score=66.99  Aligned_cols=41  Identities=27%  Similarity=0.349  Sum_probs=32.6

Q ss_pred             CceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           30 VSVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        30 ~~~pvi~i~G~-~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      .+..+++|+|. +|+||||+.-.|...  ..|+++.+|..|+..
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~  123 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK  123 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            34568888865 899999999888663  468999999999753

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.05  E-value=2.6e-06  Score=81.68  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+.++|+|+|++|+|||||+|+|+.
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g   60 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAG   60 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcC
Confidence            45678899999999999999999994

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.97  E-value=3.2e-06  Score=73.16  Aligned_cols=34  Identities=32%  Similarity=0.457  Sum_probs=21.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~   70 (293)
                      ..++++|.+|+|||||+|+|.    +.+.+.+.+.+|+
T Consensus       100 ~~v~~vG~~~vGKSslin~l~----~~~~~~~~~~~g~  133 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLK----GKRASSVGAQPGI  133 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH----TTCC---------
T ss_pred             hheEEeCCCCCCHHHHHHHHh----cccccccCCCCCC
Confidence            467889999999999999999    4444344444554

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=97.94  E-value=6.5e-05  Score=66.07  Aligned_cols=40  Identities=15%  Similarity=0.247  Sum_probs=32.2

Q ss_pred             CceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           30 VSVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        30 ~~~pvi~i~G~-~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .+..+++|+|. +|+||||+.-.|...  ..|++|.+|..|+.
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r  144 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR  144 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            34568888886 799999999888663  45899999999984

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=97.94  E-value=0.00014  Score=63.64  Aligned_cols=40  Identities=18%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             ceeEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           31 SVGVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i~G-~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +..+|+|+| .+|+||||+.-.|...  ..|+++.+|..|+..
T Consensus        91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~  133 (286)
T 3la6_A           91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRK  133 (286)
T ss_dssp             TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTT
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence            455676665 5899999999888663  568999999999863

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.91  E-value=0.00031  Score=61.81  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=29.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~   68 (293)
                      +--+++++|+.||||||+++.|...  ..+.++.+...|.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~  138 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  138 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence            4458999999999999999999763  3456777665554

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.87  E-value=0.00039  Score=62.65  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=29.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~   68 (293)
                      +.-+++++|+.||||||+++.|...  ..+.++.+...|.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~  195 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  195 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence            4558999999999999999999763  3456777766554

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=97.85  E-value=0.00014  Score=61.47  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=29.9

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      |+|+|..|+||||+.-.|...  ..|+++.++..|++
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   39 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD   39 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            445999999999999998763  56899999999985

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.84  E-value=5.6e-05  Score=73.02  Aligned_cols=46  Identities=15%  Similarity=0.293  Sum_probs=26.2

Q ss_pred             CceEEEccccccccCcc--------------cCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736            9 PLAVRIDETTHEFSNSH--------------ENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~--------------~~~~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      |..+++.++++.|.+..              ......+|.++|+|+.|||||||++.|..
T Consensus         8 ~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~G   67 (608)
T 3szr_A            8 PGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSG   67 (608)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhC
Confidence            34567777777665421              11235688999999999999999999995

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=97.83  E-value=0.00024  Score=60.98  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=29.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +.+..|..|+||||+.-.|...  ..|+++.++..|+..
T Consensus        21 I~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~   59 (262)
T 2ph1_A           21 IAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG   59 (262)
T ss_dssp             EEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            3445678899999999888653  458999999999874

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=97.79  E-value=0.00037  Score=59.78  Aligned_cols=42  Identities=17%  Similarity=0.101  Sum_probs=31.5

Q ss_pred             CCceeEEEE-EecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCC
Q 022736           29 DVSVGVTVI-TGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE   70 (293)
Q Consensus        29 ~~~~pvi~i-~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~   70 (293)
                      ..+.++|+| .|..|+||||+.-.|... ..|+++.++..|+..
T Consensus        24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~D~~~   67 (267)
T 3k9g_A           24 NKKPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQA   67 (267)
T ss_dssp             --CCEEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEECTTC
T ss_pred             CCCCeEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            345566665 678899999999888552 268999999999874

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=97.77  E-value=0.0017  Score=54.52  Aligned_cols=38  Identities=11%  Similarity=0.018  Sum_probs=30.1

Q ss_pred             eeEEEE-EecCCCcHHHHHHHHHcc--CC-CCeEEEEEcCCC
Q 022736           32 VGVTVI-TGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFG   69 (293)
Q Consensus        32 ~pvi~i-~G~~gaGKTTlin~ll~~--~~-~~~vavv~~d~g   69 (293)
                      ..+|.| .+..|+||||+.-.|...  .. |+++.++..|+.
T Consensus         4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP   45 (245)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred             CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence            345555 467899999999998763  45 999999999986

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=97.76  E-value=0.00022  Score=60.93  Aligned_cols=40  Identities=20%  Similarity=0.163  Sum_probs=31.4

Q ss_pred             ceeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           31 SVGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i~-G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +.++|.|+ +..|+||||+.-.|...  ..|+++.++..|+..
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   47 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG   47 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc
Confidence            34567665 67899999999888763  458999999999863

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=97.75  E-value=0.00036  Score=59.60  Aligned_cols=36  Identities=22%  Similarity=0.391  Sum_probs=29.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      +.+..+..|+||||+.-.|...  ..|+++.++..|+.
T Consensus         5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (263)
T 1hyq_A            5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   42 (263)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            3445778899999999988763  45899999999984

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.65  E-value=2e-05  Score=68.75  Aligned_cols=48  Identities=21%  Similarity=0.261  Sum_probs=38.1

Q ss_pred             CCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++++++++++++|+..+.+....+-     +++|+|+.|||||||++.|..-
T Consensus        18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34579999999999876666544333     5899999999999999999853

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=97.64  E-value=0.0017  Score=57.83  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=34.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      ....+++++|..|+||||+.-.|...  ..|+++.++..|+..
T Consensus        14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~   56 (334)
T 3iqw_A           14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH   56 (334)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred             CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            34567889999999999999888653  568999999999754

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=97.61  E-value=0.00066  Score=56.87  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i-~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .+|.| .+..|+||||+.-.|...  ..|+++.++..|++
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT   42 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence            34444 567899999999988763  45899999999985

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.61  E-value=2.6e-05  Score=65.71  Aligned_cols=44  Identities=23%  Similarity=0.265  Sum_probs=36.1

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++++++|++.+.+....+-     +++|+|++|||||||++.|..
T Consensus         4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A            4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred             EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48999999999876666544333     689999999999999999985

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.60  E-value=3.3e-05  Score=66.83  Aligned_cols=45  Identities=27%  Similarity=0.302  Sum_probs=38.0

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++.+++++|+..+.+....+-     +++|+|++|||||||++.|..
T Consensus        10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred             ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            378999999999987777654433     589999999999999999985

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=97.55  E-value=0.00057  Score=58.06  Aligned_cols=37  Identities=35%  Similarity=0.498  Sum_probs=29.2

Q ss_pred             eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i-~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .+|.| .+..|+||||+.-.|...  ..|+++.++..|++
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG   42 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            34554 667889999999988663  45899999999984

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.55  E-value=3e-05  Score=71.87  Aligned_cols=27  Identities=30%  Similarity=0.497  Sum_probs=24.6

Q ss_pred             CCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           28 DDVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        28 ~~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ...++.||.|+|++++|||||+|+|++
T Consensus        63 ~~~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           63 RDKEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             TTSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHhh
Confidence            456899999999999999999999985

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=97.53  E-value=0.0015  Score=55.84  Aligned_cols=38  Identities=32%  Similarity=0.310  Sum_probs=31.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      .+|.|.|..|+||||+.-.|...  ..|+++.++-.|+..
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~   41 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence            46777899999999999888763  568999999999864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.53  E-value=3.4e-05  Score=66.69  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=36.7

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|++.+.+....+     -+++|+|+.|||||||++.|..-
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            5899999999987666554433     26999999999999999999853

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.53  E-value=3.3e-05  Score=66.67  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=36.6

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++++++++|+..+.+....+-     +++|+|++|||||||++.|..-
T Consensus         6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999876666544333     6899999999999999999853

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.52  E-value=4.1e-05  Score=65.18  Aligned_cols=45  Identities=18%  Similarity=0.291  Sum_probs=36.4

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++++++++|+..+.+....+-     +++|+|+.|||||||++.|..-
T Consensus         6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A            6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999876655543332     6999999999999999999853

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.51  E-value=3.9e-05  Score=66.02  Aligned_cols=45  Identities=38%  Similarity=0.471  Sum_probs=36.5

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++++++++|++.+.+....+     -+++|+|+.|||||||++.|..-
T Consensus         7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A            7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999987666554332     26999999999999999999853

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.48  E-value=4.6e-05  Score=68.64  Aligned_cols=45  Identities=29%  Similarity=0.460  Sum_probs=37.6

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+..+.+.+..+-     +++|+|++|||||||++.|..-
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence            68999999999887776654333     5899999999999999999863

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.47  E-value=5.3e-05  Score=68.64  Aligned_cols=49  Identities=24%  Similarity=0.385  Sum_probs=38.1

Q ss_pred             CCCCc-eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736            6 EDPPL-AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         6 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      |+.+| .+++++++++|+....+....+     -+++|+|++|||||||++.|..
T Consensus         5 ~~~~M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A            5 EVIKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             -CCCCCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             cceeeeeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence            44556 4899999999987655554332     2689999999999999999986

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.47  E-value=5.1e-05  Score=63.49  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|++ +.+....+-     +++|+|+.|||||||++.|..-
T Consensus        10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999977 655544333     5899999999999999999853

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.47  E-value=5e-05  Score=65.18  Aligned_cols=45  Identities=20%  Similarity=0.359  Sum_probs=36.1

Q ss_pred             eEEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++++++++|+ .++.+.....-     +++|+|+.|||||||++.|..-
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            589999999997 65555543332     6899999999999999999863

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.47  E-value=4.8e-05  Score=65.85  Aligned_cols=44  Identities=25%  Similarity=0.282  Sum_probs=35.9

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++++++|+.++.+....+     -+++|+|+.|||||||++.|..
T Consensus        20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999987665554333     2699999999999999999994

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=97.47  E-value=0.0014  Score=56.85  Aligned_cols=37  Identities=32%  Similarity=0.388  Sum_probs=29.4

Q ss_pred             eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i-~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .+|.| .+..|+||||+.-.|...  ..|+++.++..|++
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~   44 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLR   44 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            35555 467899999999998663  45899999999993

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.46  E-value=4.4e-05  Score=65.69  Aligned_cols=45  Identities=22%  Similarity=0.241  Sum_probs=36.3

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+..+.+....+     -+++|+|+.|||||||++.|..-
T Consensus        15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999987666554333     26999999999999999999853

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.46  E-value=6e-05  Score=65.53  Aligned_cols=45  Identities=27%  Similarity=0.370  Sum_probs=35.6

Q ss_pred             eEEEccccccccCcc-cCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSH-ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~-~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++++++++|+... .+....+-     +++|+|++|||||||++.|..-
T Consensus         7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            689999999997533 55543322     5999999999999999999853

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.45  E-value=5.7e-05  Score=64.68  Aligned_cols=44  Identities=25%  Similarity=0.259  Sum_probs=35.9

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++++++|+..+.+....+-     +++|+|+.|||||||++.|..
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            48899999999876665543332     699999999999999999994

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.42  E-value=6.7e-05  Score=63.98  Aligned_cols=43  Identities=19%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             EEEccccccc-cCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEF-SNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~-~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++| ++.+.+....+     -+++|+|+.|||||||++.|..
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            6788999999 44455443322     2699999999999999999985

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.40  E-value=7.3e-05  Score=63.50  Aligned_cols=44  Identities=18%  Similarity=0.468  Sum_probs=34.4

Q ss_pred             eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++++++|+.  .+.+....+     -+++|+|+.|||||||++.|..
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4889999999973  444443333     2699999999999999999985

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.39  E-value=6.3e-05  Score=65.04  Aligned_cols=46  Identities=24%  Similarity=0.439  Sum_probs=34.5

Q ss_pred             ceEEEcccccccc--C---cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFS--N---SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~--~---~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      |++++++++++|+  .   .+.+....+     -+++|+|+.|||||||++.|..-
T Consensus         1 ~~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A            1 MRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             CCEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3588999999996  3   234443322     26899999999999999999853

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.38  E-value=9.6e-05  Score=64.09  Aligned_cols=45  Identities=24%  Similarity=0.385  Sum_probs=35.5

Q ss_pred             eEEEccccccccC---cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSN---SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~---~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+.   .+.+....+     -+++|+|+.|||||||++.|..-
T Consensus        16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999976   444443332     26899999999999999999853

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.37  E-value=0.0001  Score=62.28  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=35.1

Q ss_pred             eEEEcccccccc--CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~--~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+  ..+.+....+-     +++|+|+.|||||||++.|..-
T Consensus         6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            689999999995  34454433322     6899999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.35  E-value=0.00012  Score=65.98  Aligned_cols=47  Identities=17%  Similarity=0.294  Sum_probs=37.5

Q ss_pred             CCceEEEccccccc-cCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736            8 PPLAVRIDETTHEF-SNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+..+++++++++| ++...+....+     -+++|+|++|||||||++.|..
T Consensus        11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence            45679999999999 76555554332     2689999999999999999986

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=97.35  E-value=0.0013  Score=57.29  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=30.2

Q ss_pred             eEEEEEe---cCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVITG---FLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G---~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      ++++|++   ..|+||||+.-.|...  ..|+++.++..|+..
T Consensus        35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~   77 (298)
T 2oze_A           35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA   77 (298)
T ss_dssp             SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4555554   8999999999888653  468999999999874

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.34  E-value=8.6e-05  Score=63.48  Aligned_cols=44  Identities=25%  Similarity=0.338  Sum_probs=33.7

Q ss_pred             EEEccccccc--cCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEF--SNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~--~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++|  +..+.+....+     -+++|+|+.|||||||++.|..-
T Consensus         8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A            8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            6788999999  34444443332     26899999999999999999853

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.33  E-value=0.00014  Score=66.20  Aligned_cols=49  Identities=20%  Similarity=0.272  Sum_probs=37.9

Q ss_pred             CCCCceEEEccccccc--cCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736            6 EDPPLAVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         6 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      |+.+-.+++++++++|  +....+....+-     +++|+|++|||||||++.|..
T Consensus        14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence            3444579999999999  455555544333     599999999999999999985

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=97.32  E-value=0.002  Score=55.81  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=31.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      .+|.|.|..|+||||+.-.|...  ..|+++.++-.|+..
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~   42 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            56777899999999999888653  458999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.30  E-value=9.4e-05  Score=60.77  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=23.0

Q ss_pred             cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +|.+.+.....+..+|+|+|++||||||+.+.|.+.
T Consensus         6 ~~~~~~~~m~~~~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A            6 EYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             ---------CCCSSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eecCcccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            444444444444668999999999999999999753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.29  E-value=8e-05  Score=63.18  Aligned_cols=43  Identities=28%  Similarity=0.392  Sum_probs=32.5

Q ss_pred             EEEccccccccCc----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNS----HENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|+..    ..+....+     -+++|+|+.|||||||++.|..
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            6788999888742    23433222     3699999999999999999985

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=97.27  E-value=0.0026  Score=54.06  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=29.4

Q ss_pred             CCceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736           29 DVSVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVIL   65 (293)
Q Consensus        29 ~~~~pvi~i~G~-~gaGKTTlin~ll~~--~~~~~vavv~   65 (293)
                      +++.+.+.|+|. .|+|||++.-.|++.  ..|.+++...
T Consensus        18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK   57 (242)
T 3qxc_A           18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK   57 (242)
T ss_dssp             -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence            445688888887 999999999998874  4688888875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.27  E-value=0.00014  Score=62.70  Aligned_cols=46  Identities=13%  Similarity=0.358  Sum_probs=35.1

Q ss_pred             ceEEEccccccccCc---ccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFSNS---HENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~---~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..+++++++++|+..   +.+....+     -+++|+|+.|||||||++.|..-
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            358999999999763   33433222     26999999999999999999853

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.21  E-value=4.1e-05  Score=60.93  Aligned_cols=43  Identities=23%  Similarity=0.249  Sum_probs=31.5

Q ss_pred             EEEccccccccCcccCCC-----CceeEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~-----~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +...++++.|+....+..     .+--++++.|++|||||||++.|..
T Consensus         8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            444555677765544443     3445899999999999999999985

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.20  E-value=0.00015  Score=65.87  Aligned_cols=44  Identities=27%  Similarity=0.468  Sum_probs=36.8

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++++++|+....+....+-     +++|+|++|||||||++.|..
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence            48999999999887766654333     689999999999999999986

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.18  E-value=0.00012  Score=64.56  Aligned_cols=45  Identities=22%  Similarity=0.398  Sum_probs=35.1

Q ss_pred             eEEEccccccccC-cccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+. .+.+....+-     +++|+|+.|||||||++.|++-
T Consensus        53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence            5899999999953 4444443322     5999999999999999999863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.16  E-value=0.00016  Score=65.17  Aligned_cols=46  Identities=26%  Similarity=0.368  Sum_probs=35.0

Q ss_pred             ceEEEccccccccCc----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFSNS----HENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++++++++++|+..    ..+....+     -+++|+|++|||||||++.|..-
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence            369999999999752    23433322     36999999999999999999863

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.15  E-value=0.0002  Score=64.68  Aligned_cols=45  Identities=22%  Similarity=0.395  Sum_probs=36.0

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|++.+.+....+     -+++|+|++|||||||++.|..-
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence            4889999999987655554332     26899999999999999999863

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.14  E-value=0.00018  Score=64.86  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=35.5

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++++++|+....+....+     -+++|+|++|||||||++.|..
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence            3889999999987665554332     2689999999999999999986

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.14  E-value=0.0002  Score=64.95  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=36.2

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+....+....+-     +++|+|++|||||||++.|..-
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence            48899999999876655543332     6899999999999999999863

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.13  E-value=0.00023  Score=57.53  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++|+|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47899999999999999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.10  E-value=0.00016  Score=62.34  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=32.9

Q ss_pred             EEEccccccccC----cccCCCCce---e-EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSN----SHENDDVSV---G-VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~----~~~~~~~~~---p-vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++++++|+.    ++.+....+   + +++|+|+.|||||||++.|..
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence            678888888875    444443222   2 789999999999999999984

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.09  E-value=0.00049  Score=55.66  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++|+|++||||||+++.|...
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            47899999999999999999854

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.05  E-value=0.00032  Score=57.44  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -.+++|+|++|||||||++.|...
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            358999999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.03  E-value=0.0002  Score=60.86  Aligned_cols=41  Identities=22%  Similarity=0.185  Sum_probs=32.0

Q ss_pred             EEEccccccccCcccCCC-----CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~-----~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++++++|+..  +..     .+ -+++|+|++|||||||++.|..-
T Consensus         2 l~~~~l~~~y~~~--l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A            2 FLKVRAEKRLGNF--RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             CEEEEEEEEETTE--EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEEEEEeCCE--EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence            5788888888642  322     24 68999999999999999999863

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.03  E-value=0.00032  Score=55.53  Aligned_cols=20  Identities=40%  Similarity=0.687  Sum_probs=19.0

Q ss_pred             eEEEEEecCCCcHHHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYI   52 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~l   52 (293)
                      ++|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.01  E-value=0.00092  Score=58.68  Aligned_cols=83  Identities=22%  Similarity=0.325  Sum_probs=52.3

Q ss_pred             cccccEEEEEcccchH---HHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEe
Q 022736          151 VRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS  227 (293)
Q Consensus       151 ~~~d~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~  227 (293)
                      ..+|.+++|+|+.+..   ..++.      +...+.+...+.++|+||+|+.+..    ..+++.+..+.++..      
T Consensus        83 ~~ad~vilV~D~~~~~~s~~~l~~------~l~~~~~~~~piilv~NK~DL~~~~----~v~~~~~~~~~~~~~------  146 (301)
T 1u0l_A           83 ANVDQVILVVTVKMPETSTYIIDK------FLVLAEKNELETVMVINKMDLYDED----DLRKVRELEEIYSGL------  146 (301)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHH------HHHHHHHTTCEEEEEECCGGGCCHH----HHHHHHHHHHHHTTT------
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHH------HHHHHHHCCCCEEEEEeHHHcCCch----hHHHHHHHHHHHhhh------
Confidence            5789999999997532   11111      1222233356789999999997642    123344444443321      


Q ss_pred             ecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          228 VRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       228 ~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                             ..++.+||++|.|++++..++.
T Consensus       147 -------~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          147 -------YPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             -------SCEEECCTTTCTTHHHHHHHHS
T ss_pred             -------CcEEEEECCCCcCHHHHHHHhc
Confidence                   2467899999999998887765

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.01  E-value=0.00025  Score=63.65  Aligned_cols=43  Identities=28%  Similarity=0.406  Sum_probs=34.0

Q ss_pred             EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++.+++++|+.. .+....+     -+++|+|++|||||||++.|..-
T Consensus         2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A            2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence            6788999999765 5544332     36899999999999999999863

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.01  E-value=0.00033  Score=55.47  Aligned_cols=23  Identities=17%  Similarity=0.091  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.00  E-value=0.00019  Score=64.59  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=35.1

Q ss_pred             eEEEccccccccCcc--cCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSH--ENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~--~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++++++|++.+  .+....+     -+++|+|++|||||||++.|..
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence            488999999998765  4443322     3689999999999999999986

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.98  E-value=0.0004  Score=57.44  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.3

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +-.+++|+|++||||||+++.|++.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            4568999999999999999999975

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.97  E-value=0.00041  Score=57.12  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      +-.+++|+|++|||||||++.|++..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            44578899999999999999999753

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.97  E-value=0.0003  Score=57.81  Aligned_cols=22  Identities=41%  Similarity=0.593  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++|+|++|||||||++.|++
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4688999999999999999986

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.96  E-value=0.0015  Score=54.81  Aligned_cols=40  Identities=20%  Similarity=0.096  Sum_probs=31.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +-.+++++|++|+||||++-.++..  ..+.++.++....+.
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~   52 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT   52 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc
Confidence            3468999999999999988777654  458899988776653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.96  E-value=0.00039  Score=59.44  Aligned_cols=41  Identities=22%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++++++++    +.+.....     -+++|+|+.|||||||++.|..-
T Consensus         4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C            4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5788888876    33333222     26899999999999999999853

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.96  E-value=0.00032  Score=56.42  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=27.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d   67 (293)
                      +++++|+|++|||||||++.|++.  ..+.+.+.+..+
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d   39 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH   39 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence            578999999999999999999874  335556666644

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.95  E-value=0.00042  Score=55.39  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+|+++|++||||||+.+.|.+.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.94  E-value=0.00055  Score=55.32  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=21.6

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +..+|+|+|++||||||+.+.|.+.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.93  E-value=0.00071  Score=59.45  Aligned_cols=88  Identities=20%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             ccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeec
Q 022736          150 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR  229 (293)
Q Consensus       150 ~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~  229 (293)
                      ...+|.+++|+|+.+........   ..+...+.....+.++|+||+|+.+..+. ....++.+..+.++          
T Consensus        77 ~~naD~vliV~d~~~p~~s~~~l---~~~l~~~~~~~~~~ilV~NK~DL~~~~~v-~~~~~~~~~~~~~g----------  142 (302)
T 2yv5_A           77 VANVDRVIIVETLKMPEFNNYLL---DNMLVVYEYFKVEPVIVFNKIDLLNEEEK-KELERWISIYRDAG----------  142 (302)
T ss_dssp             EESCCEEEEEECSTTTTCCHHHH---HHHHHHHHHTTCEEEEEECCGGGCCHHHH-HHHHHHHHHHHHTT----------
T ss_pred             HHhcCEEEEEEECCCCCCCHHHH---HHHHHHHHhCCCCEEEEEEcccCCCcccc-HHHHHHHHHHHHCC----------
Confidence            46789999999997532111110   00222333345678999999999864210 00233333333322          


Q ss_pred             CCCCchhhcccccCCcchhhhhhhhhh
Q 022736          230 CQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       230 ~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                           -+++.+||++|+|+++|..++.
T Consensus       143 -----~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 -----YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             -----CEEEECCTTTCTTHHHHHHHTT
T ss_pred             -----CeEEEEECCCCCCHHHHHhhcc
Confidence                 1356788888888887776654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.93  E-value=0.00036  Score=55.50  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++|+|++||||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999853

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=96.93  E-value=0.019  Score=47.31  Aligned_cols=33  Identities=24%  Similarity=0.180  Sum_probs=24.7

Q ss_pred             eEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736           33 GVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVIL   65 (293)
Q Consensus        33 pvi~i~G-~~gaGKTTlin~ll~~--~~~~~vavv~   65 (293)
                      +++.|+| -.|+||||+.-.|...  ..|+++.++.
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d   37 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence            3455665 5899999999988764  4588988853

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.90  E-value=0.00067  Score=55.51  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=23.8

Q ss_pred             CCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           28 DDVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        28 ~~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...+..+|+|+|++||||||+.+.|.+.
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456678999999999999999999864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.88  E-value=0.00043  Score=56.95  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=22.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      +-.+++|+|++||||||+++.|.+..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45678999999999999999998753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.88  E-value=0.00054  Score=55.40  Aligned_cols=21  Identities=48%  Similarity=0.651  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++|+|++|||||||++.|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999985

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.88  E-value=0.00054  Score=55.47  Aligned_cols=22  Identities=36%  Similarity=0.459  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++|+|++||||||+++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999985

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.87  E-value=0.00058  Score=54.47  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+|+|.|++||||||+.+.|.+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.86  E-value=0.001  Score=54.69  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=26.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d   67 (293)
                      ..+++|+|++||||||+.+.|.+...  .+.++..|
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D   54 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQD   54 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCC
Confidence            45789999999999999999985311  56676655

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.84  E-value=0.00059  Score=56.29  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -+++|+|++|||||||++.|...
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            37899999999999999999853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.83  E-value=0.0006  Score=57.08  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=21.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +-.+++|+|++|||||||++.|+..
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3458899999999999999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.83  E-value=0.00065  Score=55.96  Aligned_cols=36  Identities=28%  Similarity=0.322  Sum_probs=26.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~   68 (293)
                      .-+++|+|++|||||||++.|.+.. +.+++++..+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~-~~~i~~v~~d~   41 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTL-GERVALLPMDH   41 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH-GGGEEEEEGGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecCc
Confidence            3579999999999999999998421 01377776554

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.82  E-value=0.0006  Score=54.56  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll   53 (293)
                      -.+++++|++|||||||++.+.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHc
Confidence            3479999999999999999865

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.82  E-value=0.00067  Score=54.70  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=25.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEE
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI   64 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv   64 (293)
                      .+|+|+|++||||||+.+.|.+.  ..|..+..+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~   35 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII   35 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence            57899999999999999999864  234445555

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.81  E-value=0.00062  Score=58.37  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=22.3

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.++|+|+|++||||||+.+.|.+.
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            34678999999999999999999863

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.80  E-value=0.00061  Score=56.25  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=27.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccC--CCCeEEEEEcC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNE   67 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~--~~~~vavv~~d   67 (293)
                      +-.+++|+|++|||||||++.|....  .|.+++.+..+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d   59 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD   59 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence            45689999999999999999997631  14456666643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.79  E-value=0.00089  Score=54.05  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=26.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~   65 (293)
                      .+-.+++++|++||||||+.+.|...  ..+.++.++.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   48 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD   48 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence            34567899999999999999999764  2344454443

>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A

Probab=96.77  E-value=0.0087  Score=52.81  Aligned_cols=148  Identities=17%  Similarity=0.245  Sum_probs=79.0

Q ss_pred             CceeEEEEEe---cCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCC-----Ccchhhhhhc---cCcc
Q 022736           30 VSVGVTVITG---FLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEG-----GALVEEWVEL---ANGC   98 (293)
Q Consensus        30 ~~~pvi~i~G---~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~-----~~~~~~~~~l---~~gc   98 (293)
                      ..+|||.| |   .-|+|||.++-.|.+..++++++|++...|.... ....+....+     ....+|-..+   ..+|
T Consensus        34 ~~vPVI~V-GNitvGGTGKTP~vi~L~~~L~~~~~~ilsRGYg~~~~-~~~~v~~~~~~~~~~~~~GDEp~lla~~~~~~  111 (315)
T 4ehx_A           34 LPVPVISV-GNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSK-GTLIVSEYGNLKVSWEEAGDEPYLMAKLLPHV  111 (315)
T ss_dssp             CSSCEEEE-EESBSSCCSHHHHHHHHHHHTTTSCEEEEECCCSCSSC-SEEEEEETTEECSCHHHHCHHHHHHHHHCTTS
T ss_pred             CCCCEEEE-CCEEeCCCChHHHHHHHHHHHhhcCceEEeeccccccc-CceEEeecccccCCcccccCHHHHHHHhCCCc
Confidence            35787764 4   5699999999999987667889999988875211 1111111100     0011333333   2345


Q ss_pred             eeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCc
Q 022736           99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY  178 (293)
Q Consensus        99 icc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~  178 (293)
                      .....++....... ++. ..+.|+||.|=. +-+           ..    ..-|.=|.++|...+   .....+...+
T Consensus       112 ~v~v~~~R~~~~~~-~~~-~~~~dviIlDDG-fQh-----------~~----l~rDl~Ivv~d~~~g---ng~lLPaGpL  170 (315)
T 4ehx_A          112 SVVASEDRYKGGLL-ALE-KLSPEVFILDDG-FQH-----------RK----LHRDLNILLLKKKDL---KDRLLPAGNL  170 (315)
T ss_dssp             EEEEESSHHHHHHH-HHH-HHCCSEEEEETC-TTC-----------TT----BCCSEEEEEEEHHHH---TCCBTTTSSB
T ss_pred             eEEEecchHHHHHH-Hhh-ccCCcEEEecCc-ccc-----------cc----ccccceEEEeeeecc---CCeecccccc
Confidence            44333333332222 222 356899998832 211           11    223344666785322   1111111223


Q ss_pred             hHHHHHHhccCEEEEeCCCCCC
Q 022736          179 PEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       179 ~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      .|....+..+|++++|+.+...
T Consensus       171 REp~~~l~raD~iii~~~~~~~  192 (315)
T 4ehx_A          171 REPLKEIRRADALVLTYQEVEP  192 (315)
T ss_dssp             SSCGGGGGGCSEEEEECTTTSC
T ss_pred             cCChhHhhhccEEEEecCCcch
Confidence            3455778899999999987543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.77  E-value=0.00067  Score=55.59  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      -.+++|+|++||||||+++.|.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999975

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=96.77  E-value=0.0085  Score=57.41  Aligned_cols=39  Identities=21%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      ...+++++|..|+||||+.-.|...  ..|+++.++..|+.
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~   47 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            3457889999999999999988663  45999999999974

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.77  E-value=0.00091  Score=64.18  Aligned_cols=45  Identities=24%  Similarity=0.359  Sum_probs=35.9

Q ss_pred             eEEEccccccccC--cccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+.  ++.+.+...-     +++++|+.|||||||++.|.+-
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999974  4455544332     5999999999999999999863

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.74  E-value=0.001  Score=53.38  Aligned_cols=42  Identities=29%  Similarity=0.355  Sum_probs=27.5

Q ss_pred             EEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++.|+ .++............+++|+|+.||||||++.+|.-
T Consensus         7 l~i~nf-~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A            7 LELKGF-KSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEESB-GGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeCe-EeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHH
Confidence            566666 344211111222234899999999999999999863

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.72  E-value=0.00077  Score=55.18  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=21.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +..+|+|+|++||||||+.+.|.+.
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4558999999999999999999853

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.72  E-value=0.00078  Score=54.93  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             EEEEecCCCcHHHHHHHHHccC
Q 022736           35 TVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~   56 (293)
                      |+|+||+|||||||+++|+...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6789999999999999999764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.71  E-value=0.0008  Score=54.13  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.|+++|++||||||+.+.|.+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999999999753

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.71  E-value=0.00085  Score=54.83  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++|+|++||||||+++.|.+.
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.70  E-value=0.0014  Score=53.41  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=23.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeE
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRI   61 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~v   61 (293)
                      ..+|+|+|++||||||+.+.|.+...|.++
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~   33 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESIPANTI   33 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTSCGGGE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHCCCce
Confidence            457899999999999999999875433333

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.70  E-value=0.00081  Score=55.93  Aligned_cols=23  Identities=39%  Similarity=0.472  Sum_probs=20.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+|+|+|++||||||+.+.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999974

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.70  E-value=0.00083  Score=56.93  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +..+++|+|++||||||+++.|.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999984

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.70  E-value=0.0013  Score=58.36  Aligned_cols=38  Identities=21%  Similarity=0.172  Sum_probs=28.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcC
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNE   67 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d   67 (293)
                      .+.-+++|+|++|||||||++.|...    ..+.++.++..|
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D  131 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD  131 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence            34558999999999999999998653    124567777655

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.69  E-value=0.0011  Score=53.30  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+|+|+|++||||||+.+.|.+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999975

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.69  E-value=0.0011  Score=52.76  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+++|+|++||||||+.+.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999974

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.68  E-value=0.0056  Score=54.98  Aligned_cols=88  Identities=22%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce-eeccchhHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI-CCTVKHSLVQA  110 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci-cc~~~~~l~~~  110 (293)
                      ++.|.|++|+|||||+..++..  ..+.++..+..+...    +......-  ++.      ..+-.+ +.....++...
T Consensus        63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~----~~~ra~rl--gv~------~~~l~i~~~~~~e~~l~~  130 (356)
T 3hr8_A           63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL----DPVYAKNL--GVD------LKSLLISQPDHGEQALEI  130 (356)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHH--TCC------GGGCEEECCSSHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc----chHHHHHc--CCc------hhhhhhhhccCHHHHHHH
Confidence            8999999999999999999864  346778888766543    11111100  000      011111 12233455555


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCc
Q 022736          111 LEQLVQRKERLDHILLETTGLANP  134 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~  134 (293)
                      +..++. ...+++++||.....-+
T Consensus       131 ~~~l~~-~~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          131 VDELVR-SGVVDLIVVDSVAALVP  153 (356)
T ss_dssp             HHHHHH-TSCCSEEEEECTTTCCC
T ss_pred             HHHHhh-hcCCCeEEehHhhhhcC
Confidence            665554 36789999998775444

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.68  E-value=0.0017  Score=58.67  Aligned_cols=88  Identities=13%  Similarity=0.080  Sum_probs=52.2

Q ss_pred             ccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCC
Q 022736          152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ  231 (293)
Q Consensus       152 ~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~  231 (293)
                      ..+.+++|+|+..+...+..     .+.....  ..+.++|+||+|+++...   ..+.+.+.++.....        ..
T Consensus        69 ~~~~il~VvD~~d~~~~~~~-----~l~~~~~--~~p~ilV~NK~DL~~~~~---~~~~~~~~l~~~~~~--------~g  130 (368)
T 3h2y_A           69 SDALVVKIVDIFDFNGSWLP-----GLHRFVG--NNKVLLVGNKADLIPKSV---KHDKVKHWMRYSAKQ--------LG  130 (368)
T ss_dssp             SCCEEEEEEETTSHHHHCCT-----THHHHSS--SSCEEEEEECGGGSCTTS---CHHHHHHHHHHHHHH--------TT
T ss_pred             cCcEEEEEEECCCCcccHHH-----HHHHHhC--CCcEEEEEEChhcCCccc---CHHHHHHHHHHHHHH--------cC
Confidence            45589999999875422110     0111111  467899999999986542   233444443322110        00


Q ss_pred             CCchhhcccccCCcchhhhhhhhhhh
Q 022736          232 VDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       232 ~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .....++.+||++|.|++++..++.+
T Consensus       131 ~~~~~v~~iSA~~g~gi~~L~~~l~~  156 (368)
T 3h2y_A          131 LKPEDVFLISAAKGQGIAELADAIEY  156 (368)
T ss_dssp             CCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCcccEEEEeCCCCcCHHHHHhhhhh
Confidence            11235788999999999998888753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.68  E-value=0.00074  Score=56.33  Aligned_cols=23  Identities=43%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++|+|++|||||||++.|+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.68  E-value=0.00074  Score=54.71  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +.++|+|+|++||||||+.+.|.+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.66  E-value=0.00084  Score=53.85  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.++|+|+|++||||||+.+.|.+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.65  E-value=0.0011  Score=54.38  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..+|+|.|++||||||+.+.|.+.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            457899999999999999999874

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.65  E-value=0.0012  Score=54.09  Aligned_cols=26  Identities=23%  Similarity=0.216  Sum_probs=22.2

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+..+|+|+|.+||||||+.+.|.+.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            34458999999999999999999763

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.64  E-value=0.0011  Score=53.62  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +.+.|+|+|++||||||+.+.|.+.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999999853

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.63  E-value=0.00081  Score=53.73  Aligned_cols=24  Identities=38%  Similarity=0.602  Sum_probs=20.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++.|+|+|++||||||+.+.|.+.
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            346889999999999999999753

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.63  E-value=0.0013  Score=52.94  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=20.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      -.+|+++|++||||||+.+.|.+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999975

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.62  E-value=0.0013  Score=53.91  Aligned_cols=26  Identities=38%  Similarity=0.426  Sum_probs=22.5

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+-.+++|+|++||||||+.+.|..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999975

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.62  E-value=0.0012  Score=54.04  Aligned_cols=26  Identities=27%  Similarity=0.162  Sum_probs=21.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.-+|+|+|++||||||+.+.|.+.
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            33347899999999999999999753

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.62  E-value=0.0043  Score=55.61  Aligned_cols=87  Identities=18%  Similarity=0.194  Sum_probs=51.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-eccchhHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLVQA  110 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~~l~~~  110 (293)
                      ++.|.|++|+|||||+..++..  ..+.++..+..+...    +......  -+...+...      +. ....+++...
T Consensus        63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~----~~~~a~~--lG~~~~~l~------i~~~~~~e~~l~~  130 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL----DPEYAKK--LGVDTDSLL------VSQPDTGEQALEI  130 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHH--TTCCGGGCE------EECCSSHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc----CHHHHHH--cCCCHHHeE------EecCCCHHHHHHH
Confidence            7999999999999999888753  347788888877543    1111110  011111110      11 1122344444


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCC
Q 022736          111 LEQLVQRKERLDHILLETTGLAN  133 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~  133 (293)
                      +..+.. ..+++++|||.+...-
T Consensus       131 ~~~l~~-~~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          131 ADMLVR-SGALDIIVIDSVAALV  152 (349)
T ss_dssp             HHHHHT-TTCCSEEEEECGGGCC
T ss_pred             HHHHHh-cCCCCEEEEcChHhhc
Confidence            554543 3579999999998544

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.62  E-value=0.0064  Score=54.84  Aligned_cols=88  Identities=22%  Similarity=0.232  Sum_probs=53.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ++.|.|++|+|||||...++..  ..+.+++++..+...    +......  -++..+...     ..++...+++...+
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~----~~~~a~~--~g~d~~~l~-----i~~~~~~e~~l~~l  144 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL----DPVYARA--LGVNTDELL-----VSQPDNGEQALEIM  144 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHH--TTCCGGGCE-----EECCSSHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh----hHHHHHH--cCCCHHHce-----eecCCcHHHHHHHH
Confidence            7889999999999999988764  347789999988653    1111111  011001100     01112234555556


Q ss_pred             HHHHhhcCCCCEEEEecCCCCC
Q 022736          112 EQLVQRKERLDHILLETTGLAN  133 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~  133 (293)
                      ..+.. ..++++||||..+...
T Consensus       145 ~~l~~-~~~~~lVVIDsl~~l~  165 (366)
T 1xp8_A          145 ELLVR-SGAIDVVVVDSVAALT  165 (366)
T ss_dssp             HHHHT-TTCCSEEEEECTTTCC
T ss_pred             HHHHh-cCCCCEEEEeChHHhc
Confidence            65554 3679999999999554

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.62  E-value=0.0014  Score=54.03  Aligned_cols=35  Identities=29%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~   68 (293)
                      .+++|+|++|||||||++.++. ..+.++.++..+.
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~   55 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG   55 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence            3799999999999999999987 4567888887765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.60  E-value=0.0012  Score=54.14  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++|+|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999984

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.59  E-value=0.0011  Score=53.29  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999763

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.59  E-value=0.0012  Score=57.37  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=51.8

Q ss_pred             hccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEE
Q 022736          147 LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  224 (293)
Q Consensus       147 ~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i  224 (293)
                      ......+|.|+.|+|+........        . .+.++  ..+.++|+||+|+++..    ..+...+.++..+     
T Consensus        18 ~~~l~~aDvVl~VvDAr~p~~~~~--------~-~l~~~l~~kp~ilVlNK~DL~~~~----~~~~~~~~~~~~g-----   79 (282)
T 1puj_A           18 TEKLKLIDIVYELVDARIPMSSRN--------P-MIEDILKNKPRIMLLNKADKADAA----VTQQWKEHFENQG-----   79 (282)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--------H-HHHHHCSSSCEEEEEECGGGSCHH----HHHHHHHHHHTTT-----
T ss_pred             HHHHhhCCEEEEEEeCCCCCccCC--------H-HHHHHHCCCCEEEEEECcccCCHH----HHHHHHHHHHhcC-----
Confidence            345578999999999976432110        1 11221  46789999999998742    2233333332111     


Q ss_pred             EEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          225 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       225 ~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                                .+++.+|+.++.|++++..++.+
T Consensus        80 ----------~~~i~iSA~~~~gi~~L~~~i~~  102 (282)
T 1puj_A           80 ----------IRSLSINSVNGQGLNQIVPASKE  102 (282)
T ss_dssp             ----------CCEEECCTTTCTTGGGHHHHHHH
T ss_pred             ----------CcEEEEECCCcccHHHHHHHHHH
Confidence                      14567899999999888776543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.58  E-value=0.0019  Score=56.32  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=22.3

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+..+++++|++||||||+.+.|.+.
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34557889999999999999999864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.57  E-value=0.0012  Score=54.23  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +..+|+|+|++||||||+.+.|.+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.57  E-value=0.0013  Score=53.12  Aligned_cols=24  Identities=33%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..+|+|+|.+||||||+.+.|.+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.55  E-value=0.00079  Score=56.43  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=15.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHH-cc
Q 022736           33 GVTVITGFLGAGKSTLVNYIL-NG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll-~~   55 (293)
                      .+++|+|++||||||+++.|. ..
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            479999999999999999999 54

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.54  E-value=0.0014  Score=53.25  Aligned_cols=26  Identities=31%  Similarity=0.323  Sum_probs=22.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+..+|+|+|++||||||+.+.|.+.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34568999999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.54  E-value=0.0013  Score=53.88  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999985

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.53  E-value=0.0015  Score=54.51  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=22.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.++|+|+|+|||||+|....|.+.
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            46778999999999999999999863

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.53  E-value=0.0013  Score=59.56  Aligned_cols=88  Identities=11%  Similarity=0.072  Sum_probs=53.9

Q ss_pred             cccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeec
Q 022736          151 VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR  229 (293)
Q Consensus       151 ~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~  229 (293)
                      .+.+.+++|+|+..+....        ..+..+.+ ..+.++|+||+|+++.+.   ..+.+.+.++......       
T Consensus        70 ~~~~lil~VvD~~d~~~s~--------~~~l~~~l~~~piilV~NK~DLl~~~~---~~~~~~~~l~~~~~~~-------  131 (369)
T 3ec1_A           70 ESKALVVNIVDIFDFNGSF--------IPGLPRFAADNPILLVGNKADLLPRSV---KYPKLLRWMRRMAEEL-------  131 (369)
T ss_dssp             HHCCEEEEEEETTCSGGGC--------CSSHHHHCTTSCEEEEEECGGGSCTTC---CHHHHHHHHHHHHHTT-------
T ss_pred             ccCcEEEEEEECCCCCCch--------hhHHHHHhCCCCEEEEEEChhcCCCcc---CHHHHHHHHHHHHHHc-------
Confidence            3567899999998765311        11111112 467899999999987542   2344444443321110       


Q ss_pred             CCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          230 CQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       230 ~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                       ...+..++.+||++|.|+++|.+.+.+
T Consensus       132 -g~~~~~v~~iSA~~g~gi~~L~~~I~~  158 (369)
T 3ec1_A          132 -GLCPVDVCLVSAAKGIGMAKVMEAINR  158 (369)
T ss_dssp             -TCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             -CCCcccEEEEECCCCCCHHHHHHHHHh
Confidence             011235788999999999988887754

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.53  E-value=0.014  Score=47.58  Aligned_cols=38  Identities=26%  Similarity=0.197  Sum_probs=29.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      -.+++++|+.||||||.+-.++..  ..+.++.++.....
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d   47 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID   47 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence            358999999999999988887764  36889999875443

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.52  E-value=0.0012  Score=56.66  Aligned_cols=25  Identities=32%  Similarity=0.583  Sum_probs=21.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +-.+++|+|+.|||||||++.|++.
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHh
Confidence            3458999999999999999999863

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.51  E-value=0.0078  Score=54.06  Aligned_cols=88  Identities=18%  Similarity=0.272  Sum_probs=52.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-eccchhHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLVQA  110 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~~l~~~  110 (293)
                      +++|.|++|+|||||...++..  ..+.+++++..+...    +......-  +...+...      +. .....++...
T Consensus        65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~----~~~~a~~~--g~~~~~l~------i~~~~~~e~~~~~  132 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIYARKL--GVDIDNLL------CSQPDTGEQALEI  132 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHT--TCCGGGCE------EECCSSHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc----cHHHHHHc--CCChhhee------eeCCCCHHHHHHH
Confidence            7999999999999999998764  346788888887543    11111110  11001100      11 1122344555


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCc
Q 022736          111 LEQLVQRKERLDHILLETTGLANP  134 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~  134 (293)
                      +..+.. ...++++|||..+...+
T Consensus       133 ~~~l~~-~~~~~lVVIDsl~~l~~  155 (356)
T 1u94_A          133 CDALAR-SGAVDVIVVDSVAALTP  155 (356)
T ss_dssp             HHHHHH-HTCCSEEEEECGGGCCC
T ss_pred             HHHHHh-ccCCCEEEEcCHHHhcc
Confidence            555544 36799999999995543

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.50  E-value=0.0025  Score=55.47  Aligned_cols=36  Identities=31%  Similarity=0.332  Sum_probs=29.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFG   69 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g   69 (293)
                      +++|+|++|+|||||++.++..   ..|.++.++..+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~   75 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES   75 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC
Confidence            7999999999999999998764   33667888877654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.48  E-value=0.0014  Score=62.97  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=35.3

Q ss_pred             eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+.  ++.+.+...     -+++++|+.|||||||++.|.+-
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            5899999999974  344443322     25999999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.47  E-value=0.0016  Score=53.93  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+|+|+|.+||||||+.+.|.+
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999975

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.46  E-value=0.0022  Score=52.54  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=26.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d   67 (293)
                      +..+++|+|++||||||+++.|...  ..+.++.+...|
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d   59 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence            4568999999999999999999763  124445554433

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.45  E-value=0.0016  Score=54.01  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      -+++|+|++|||||||++.|+.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999975

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.45  E-value=0.0017  Score=53.81  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=28.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      -+++|+|++|||||||++.++..  ..+.++.++..+..
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~   62 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES   62 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence            37899999999999999999853  23557777776653

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.43  E-value=0.0016  Score=55.58  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++|+|++|||||||.+.|.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            57899999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.43  E-value=0.0015  Score=52.96  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=21.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +..+|+|+|++||||||+.+.|.+.
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999853

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=96.43  E-value=0.038  Score=49.75  Aligned_cols=39  Identities=23%  Similarity=0.234  Sum_probs=30.9

Q ss_pred             CCceeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736           29 DVSVGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (293)
Q Consensus        29 ~~~~pvi~i~-G~~gaGKTTlin~ll~~--~~~~~vavv~~d   67 (293)
                      ..+..+|+|+ |..|+||||+.-.|...  ..|+++.++..|
T Consensus       140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            4566777776 59999999999888653  348999999988

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.42  E-value=0.003  Score=54.79  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+..+|+|+|++||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999983

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.42  E-value=0.0012  Score=53.09  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++|+|+|++||||||+.+.|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999975

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.41  E-value=0.0017  Score=55.00  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      -+++|+|+.|||||||++.|..
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.40  E-value=0.0017  Score=52.85  Aligned_cols=22  Identities=41%  Similarity=0.451  Sum_probs=20.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +|+|.|++||||||+.+.|.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6889999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.40  E-value=0.0016  Score=62.72  Aligned_cols=45  Identities=18%  Similarity=0.348  Sum_probs=35.8

Q ss_pred             eEEEccccccccC-cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSN-SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++++|++++|+. .+.+.+...     -+++|+|+.|||||||++.|++-
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999964 345554332     36999999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.40  E-value=0.001  Score=53.22  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=17.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..+|+|+|++||||||+.+.|.+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.40  E-value=0.0013  Score=54.46  Aligned_cols=22  Identities=23%  Similarity=0.141  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      -+++|+|+.|||||||++.|..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3789999999999999999984

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.38  E-value=0.0028  Score=55.70  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=26.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNE   67 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d   67 (293)
                      +.-+++|+|++|||||||++.|...    ..+.++.++..+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d  119 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence            3458999999999999999999763    223345555433

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.38  E-value=0.0017  Score=58.33  Aligned_cols=21  Identities=38%  Similarity=0.730  Sum_probs=19.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++|+|++|||||||+|.|+.
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            789999999999999999995

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.37  E-value=0.0011  Score=54.56  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=20.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +|+|.|++||||||+++.|.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6889999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.36  E-value=0.0019  Score=53.88  Aligned_cols=25  Identities=32%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +..+|+|.|++||||||+.+.|.+.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999854

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.34  E-value=0.0019  Score=53.64  Aligned_cols=24  Identities=29%  Similarity=0.238  Sum_probs=21.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...|+|+|++||||||+.+.|.+.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.34  E-value=0.00055  Score=58.54  Aligned_cols=44  Identities=14%  Similarity=0.232  Sum_probs=23.3

Q ss_pred             eEEEccc-cccc-cCcccCCC-----Cc---eeEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDET-THEF-SNSHENDD-----VS---VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~-~~~~-~~~~~~~~-----~~---~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++++ +++| +....+..     .+   -.+++|+|++||||||+.+.|.+
T Consensus        17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            5788898 8888 54433332     12   45799999999999999999975

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.33  E-value=0.0016  Score=51.67  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++|+|+|++||||||+.+.|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999975

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.33  E-value=0.0019  Score=56.96  Aligned_cols=38  Identities=16%  Similarity=0.126  Sum_probs=29.2

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEEcCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEF   68 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~---~~~-~~vavv~~d~   68 (293)
                      +--+++|+|++|||||||++.|...   ..| .+++++.-+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~  130 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG  130 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence            4558999999999999999998763   223 4677777654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.32  E-value=0.0024  Score=64.51  Aligned_cols=45  Identities=24%  Similarity=0.154  Sum_probs=35.1

Q ss_pred             ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+...+++++|+.+..+....+-     +++|+|+.|||||||++.|..
T Consensus       434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            345555899999876666544333     599999999999999999984

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.32  E-value=0.002  Score=56.61  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++|++|||||||+|.|+ .
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~  187 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-G  187 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-S
T ss_pred             cEEEEECCCCCCHHHHHHHHH-H
Confidence            378999999999999999998 5

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.31  E-value=0.0021  Score=51.81  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +|+|+|.+||||||+.+.|.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999863

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.30  E-value=0.0017  Score=52.95  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++|+|++|||||||++.|..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            578999999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.29  E-value=0.0022  Score=54.56  Aligned_cols=26  Identities=19%  Similarity=0.119  Sum_probs=21.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+..+|+|+|++||||||+.+.|.+.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.29  E-value=0.0025  Score=54.02  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +...|+|+|++||||||+.+.|.+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            455789999999999999999985

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.29  E-value=0.0018  Score=53.87  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=20.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...|+|.|++||||||+.+.|.+.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999853

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.28  E-value=0.0014  Score=62.97  Aligned_cols=45  Identities=24%  Similarity=0.346  Sum_probs=35.0

Q ss_pred             eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+.  ++.+.+...     -+++|+|+.|||||||++.|++-
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred             cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999954  344444322     25999999999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.28  E-value=0.0034  Score=52.59  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=29.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      +++|.|++|||||||+..++..  ..+.++.++..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~   62 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH   62 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            7899999999999998887653  34678888887654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.28  E-value=0.0039  Score=57.27  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=26.8

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~   65 (293)
                      .+-.+++|+|+.|||||||++.|+..  ....++.++.
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e  202 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE  202 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence            34568999999999999999999874  2234454444

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.24  E-value=0.0028  Score=55.36  Aligned_cols=26  Identities=27%  Similarity=0.163  Sum_probs=22.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+..+|+|+|++|||||||++.|.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998764

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.24  E-value=0.0092  Score=49.99  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=29.2

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +++.|.+|+||||++-.+...  ..|.++.++..|+..
T Consensus         9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~   46 (228)
T 2r8r_A            9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHG   46 (228)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCC
Confidence            677999999999998777653  458899888888753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.24  E-value=0.0011  Score=57.84  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=25.1

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d   67 (293)
                      +.++|+|+|++||||||+.+.|.+.  ..+.++.++..|
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D   42 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   42 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence            4568999999999999999999763  123446676644

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=96.23  E-value=0.0096  Score=53.50  Aligned_cols=38  Identities=21%  Similarity=0.177  Sum_probs=30.0

Q ss_pred             eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i-~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      .+|+| .+..|+||||+.-.|...  ..|++|.+|..|+..
T Consensus         2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~   42 (361)
T 3pg5_A            2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQC   42 (361)
T ss_dssp             EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence            34444 588999999999888653  468999999999874

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.23  E-value=0.0022  Score=56.33  Aligned_cols=43  Identities=14%  Similarity=0.040  Sum_probs=31.8

Q ss_pred             EEEccccccccCcccCC----C-CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHEND----D-VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~----~-~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++.+++++|+ .+.+.    . .+--+++|+|++|||||||++.|++-
T Consensus       102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            67788888886 33322    1 12347999999999999999999853

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.21  E-value=0.0027  Score=54.06  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=21.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +..+|+|+|++||||||+++.|.+
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999984

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.21  E-value=0.003  Score=49.35  Aligned_cols=25  Identities=28%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +-..++|.|++|+|||||++.+.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999999863

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.20  E-value=0.0026  Score=57.20  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -.+++|+|+.|||||||++.++..
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            358999999999999999999863

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.20  E-value=0.0043  Score=54.63  Aligned_cols=34  Identities=18%  Similarity=0.152  Sum_probs=26.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d   67 (293)
                      +.++++|+|++|||||||...|.+..   ...+|+.|
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~---~~~iis~D   35 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRL---NGEVISGD   35 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTT---TEEEEECC
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhC---ccceeecC
Confidence            35789999999999999999998753   23566654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.20  E-value=0.0022  Score=51.43  Aligned_cols=24  Identities=25%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -..+++.|++|+|||||++.+...
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999999853

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.18  E-value=0.001  Score=58.52  Aligned_cols=22  Identities=45%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++|+|++|||||||+|.|+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHhcc
Confidence            4889999999999999999984

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.18  E-value=0.0026  Score=52.41  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=18.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .|+|+|++||||||+.+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999999975

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.17  E-value=0.0025  Score=54.23  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=22.4

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+..+++++|++||||||+.+.|.+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34567899999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.17  E-value=0.0027  Score=50.76  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      -.+++|+|++||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34788999999999999999975

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.16  E-value=0.0024  Score=54.85  Aligned_cols=82  Identities=13%  Similarity=0.112  Sum_probs=50.0

Q ss_pred             hccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEE
Q 022736          147 LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR  226 (293)
Q Consensus       147 ~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~  226 (293)
                      ......+|.|+.|+|+.........  .   .. ++   ..+-++|+||+|+++..    ..+.+.+.++..+       
T Consensus        16 ~~~l~~~D~vl~VvDar~P~~~~~~--~---l~-ll---~k~~iivlNK~DL~~~~----~~~~~~~~~~~~g-------   75 (262)
T 3cnl_A           16 KDLLRLVNTVVEVRDARAPFATSAY--G---VD-FS---RKETIILLNKVDIADEK----TTKKWVEFFKKQG-------   75 (262)
T ss_dssp             HHHHTTCSEEEEEEETTSTTTTSCT--T---SC-CT---TSEEEEEEECGGGSCHH----HHHHHHHHHHHTT-------
T ss_pred             HHHHhhCCEEEEEeeCCCCCcCcCh--H---HH-hc---CCCcEEEEECccCCCHH----HHHHHHHHHHHcC-------
Confidence            3445688999999999864332111  0   11 11   67899999999998742    2233344443321       


Q ss_pred             eecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          227 SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       227 ~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                              .++ .+|+.++.|+++|..++.+
T Consensus        76 --------~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           76 --------KRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             --------CCE-EECCTTSCHHHHHHHHCCC
T ss_pred             --------CeE-EEECCCCcCHHHHHHHHHH
Confidence                    123 5677788887777766644

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.15  E-value=0.0048  Score=58.20  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=24.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEE
Q 022736           34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVIL   65 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~   65 (293)
                      .++|+|++||||||+++.|+.. ....++..+.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitie  294 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE  294 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence            4899999999999999999875 3344444443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.15  E-value=0.0034  Score=57.67  Aligned_cols=29  Identities=38%  Similarity=0.391  Sum_probs=24.2

Q ss_pred             CCCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           27 NDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        27 ~~~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ....+..+|+++|++||||||+.+.|.+.
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            33456678999999999999999999853

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.14  E-value=0.0026  Score=61.24  Aligned_cols=40  Identities=23%  Similarity=0.263  Sum_probs=30.1

Q ss_pred             ccccccccCcc-cCCCC----ceeEEEEEecCCCcHHHHHHHHHc
Q 022736           15 DETTHEFSNSH-ENDDV----SVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        15 ~~~~~~~~~~~-~~~~~----~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++++|+... .+.+.    +=-+++|+|+.|||||||++.|..
T Consensus        95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~G  139 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG  139 (607)
T ss_dssp             GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhC
Confidence            78888887642 33222    223799999999999999999985

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.14  E-value=0.0019  Score=61.90  Aligned_cols=45  Identities=27%  Similarity=0.472  Sum_probs=35.0

Q ss_pred             eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+.  .+.+.+...     -+++++|+.|||||||++.|++-
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence            5899999999975  234443322     26999999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.12  E-value=0.0029  Score=50.01  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +.+|+|+|.+||||||+.+.|.+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999975

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=96.10  E-value=0.013  Score=51.69  Aligned_cols=38  Identities=26%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      ..+++++|..|+||||+.-.|...  ..|+++.++..|+.
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~   53 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA   53 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            457788999999999999988653  45999999999984

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.09  E-value=0.0031  Score=49.68  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .|+|+|.+||||||+.+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999975

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.09  E-value=0.0047  Score=55.59  Aligned_cols=22  Identities=36%  Similarity=0.644  Sum_probs=20.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++|+|+.|||||||++.|++.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999975

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=96.08  E-value=0.0058  Score=54.84  Aligned_cols=121  Identities=14%  Similarity=0.104  Sum_probs=63.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhh---cccCCchHHHHHH-------hccCE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY---RHLSSYPEAIHQI-------AFADV  190 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~---~~~~~~~~~~~qi-------~~a~i  190 (293)
                      ..+-++||+|......+...        -...++++|+|+|.+...+.+...   ..+.....++..+       ..+.+
T Consensus       193 ~~l~iwDt~GQe~~r~~w~~--------yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii  264 (353)
T 1cip_A          193 LHFKMFDVGGQRSERKKWIH--------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII  264 (353)
T ss_dssp             EEEEEEEECCSGGGGGGGGG--------GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             eeEEEEeCCCchhhhHHHHH--------HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence            45678999997654333322        124688999999998742100000   0000011222221       34679


Q ss_pred             EEEeCCCCCCCCCC-------------cchHHHHHHHHH----hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736          191 VILNKVDLVSPERS-------------GDSLDELEKEIH----EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG  253 (293)
Q Consensus       191 ivlNK~D~~~~~~~-------------~~~~~~~~~~l~----~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~  253 (293)
                      +++||+|+......             ....++..+.++    .++...       ... .-.++.+||++++|+..+..
T Consensus       265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~-------~~~-~~~~~etSA~~~~nV~~vF~  336 (353)
T 1cip_A          265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRK-------DTK-EIYTHFTCATDTKNVQFVFD  336 (353)
T ss_dssp             EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCT-------TTC-CEEEEECCTTCHHHHHHHHH
T ss_pred             EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhccc-------CCC-ceEEEEEECcCchhHHHHHH
Confidence            99999998521100             012344444443    343210       000 12356799999999998887


Q ss_pred             hhhh
Q 022736          254 LLEE  257 (293)
Q Consensus       254 ~l~~  257 (293)
                      ++.+
T Consensus       337 ~v~~  340 (353)
T 1cip_A          337 AVTD  340 (353)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.07  E-value=0.0032  Score=51.93  Aligned_cols=21  Identities=38%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      |+|+|++||||||+.+.|.+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999753

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=96.06  E-value=0.025  Score=50.56  Aligned_cols=40  Identities=15%  Similarity=0.195  Sum_probs=32.6

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      ...+++++|..|+||||+.-.|...  ..|+++.++..|+..
T Consensus        25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~   66 (349)
T 3ug7_A           25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAH   66 (349)
T ss_dssp             SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTC
T ss_pred             CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            3456778999999999999888653  458999999999853

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.06  E-value=0.0049  Score=49.93  Aligned_cols=37  Identities=30%  Similarity=0.302  Sum_probs=27.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .+++++|++|+||||++-+++..  ..+.++.++.+...
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d   42 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKID   42 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccc
Confidence            47889999999999998666543  34778888776543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.05  E-value=0.0028  Score=55.60  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++++|++|||||||+|.|..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHST
T ss_pred             CeEEEECCCCCcHHHHHHHhcc
Confidence            3789999999999999999985

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.05  E-value=0.035  Score=46.09  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=27.3

Q ss_pred             eeEEEEEecCCCcHHH-HHHHHHcc-CCCCeEEEEEcCCC
Q 022736           32 VGVTVITGFLGAGKST-LVNYILNG-KHGKRIAVILNEFG   69 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTT-lin~ll~~-~~~~~vavv~~d~g   69 (293)
                      -.+.+++|+.|||||| |++.+.+. ..+.++.++.....
T Consensus        28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D   67 (219)
T 3e2i_A           28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID   67 (219)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence            4578899999999999 66665442 34788888876554

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.04  E-value=0.0035  Score=51.98  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...|+|.|++||||||+.+.|.+.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.00  E-value=0.0032  Score=56.92  Aligned_cols=24  Identities=33%  Similarity=0.606  Sum_probs=21.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -.+++|+|++||||||+++.|++.
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            457999999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.00  E-value=0.0073  Score=53.71  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=26.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d   67 (293)
                      .++++|+|+.|||||||...|.+..   ...+|+.|
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~D   72 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHF---PLEVINSD   72 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTS---CEEEEECC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHC---CCcEEccc
Confidence            4689999999999999999999743   33566654

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.99  E-value=0.0053  Score=54.56  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++|+|++|||||||++.|++.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999974

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.99  E-value=0.0035  Score=51.08  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      |+|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999975

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.99  E-value=0.0048  Score=54.97  Aligned_cols=32  Identities=22%  Similarity=0.183  Sum_probs=26.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d   67 (293)
                      ++|+|+|++|||||||...|.+..   ...+++.|
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l---~~~iis~D   39 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF---NGEIISGD   39 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT---TEEEEECC
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc---CCceeccc
Confidence            589999999999999999998643   24566655

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.97  E-value=0.0043  Score=51.14  Aligned_cols=26  Identities=27%  Similarity=0.190  Sum_probs=22.1

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+..+++|+|++||||||+.+.|.+.
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999999753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.97  E-value=0.0046  Score=48.30  Aligned_cols=40  Identities=30%  Similarity=0.441  Sum_probs=27.6

Q ss_pred             eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHH
Q 022736           11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll   53 (293)
                      .+++.|+. ++.+.....  ..++.+|+|+.||||||++.+|.
T Consensus         5 ~l~i~nf~-~~~~~~i~f--~~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A            5 RVTVKNFR-SHSDTVVEF--KEGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEESBT-TBSSEEEEC--CSEEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeCcc-cCcceEEEc--CCCeEEEECCCCCCHHHHHHHHH
Confidence            45666763 222222222  24689999999999999999986

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.97  E-value=0.0035  Score=54.72  Aligned_cols=43  Identities=19%  Similarity=0.286  Sum_probs=23.7

Q ss_pred             eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++++++++.+  .+.+....+     -+++|+|+.|||||||++.|..-
T Consensus        40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            57788888752  333433222     26999999999999999999863

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.95  E-value=0.004  Score=52.22  Aligned_cols=25  Identities=28%  Similarity=0.235  Sum_probs=21.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +...|+|.|++||||||+.+.|.+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999853

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.94  E-value=0.0086  Score=49.96  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=27.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--C------CCCeEEEEEcCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--K------HGKRIAVILNEF   68 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~------~~~~vavv~~d~   68 (293)
                      +++|+|++|||||||+..++..  .      .+.++..+..+.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            7999999999999999999873  2      245666666654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.94  E-value=0.0025  Score=64.40  Aligned_cols=45  Identities=24%  Similarity=0.426  Sum_probs=35.1

Q ss_pred             eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++|++++|+.  ++.+....+     -+++|+|+.|||||||++.|...
T Consensus       671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred             eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999964  344443332     26999999999999999999864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.92  E-value=0.0059  Score=54.98  Aligned_cols=122  Identities=11%  Similarity=0.080  Sum_probs=59.5

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhc---ccCCchHHHHH-------HhccC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYR---HLSSYPEAIHQ-------IAFAD  189 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~---~~~~~~~~~~q-------i~~a~  189 (293)
                      +..+.++||+|......+...        -...++++|+|+|.+...+.+....   .+.....++..       ...+.
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~--------~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFE--------CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             TEEEEEEEECC-------CTT--------SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             CeEEEEEeccchhhhhhhHHH--------HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence            345789999997543333211        1246789999999987311000000   00001112211       13467


Q ss_pred             EEEEeCCCCCCCC--------------CCcchHHHHHHHH----HhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          190 VVILNKVDLVSPE--------------RSGDSLDELEKEI----HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       190 iivlNK~D~~~~~--------------~~~~~~~~~~~~l----~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      ++++||+|+..+.              ......++..+.+    ..++....     .  . .-.++.+||++++|+..+
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~-----~--~-~~~~~~tSA~d~~nV~~v  343 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQ-----Q--R-PLYHHFTTAINTENIRLV  343 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC----------CCEEEECCTTCHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccC-----C--C-ceEEEEEecCCchhHHHH
Confidence            9999999986311              0001234444433    22322100     0  0 123467899999999988


Q ss_pred             hhhhhh
Q 022736          252 EGLLEE  257 (293)
Q Consensus       252 ~~~l~~  257 (293)
                      ..++.+
T Consensus       344 F~~v~~  349 (362)
T 1zcb_A          344 FRDVKD  349 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.90  E-value=0.0043  Score=50.68  Aligned_cols=24  Identities=38%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      --.+|+|+|.+||||||+.+.|.+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999985

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.89  E-value=0.0081  Score=49.88  Aligned_cols=39  Identities=28%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +-.+|+|.|.+||||||+++.|.+.  ..+.++ +...+|+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~   45 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGG   45 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCS
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCC
Confidence            3457889999999999999999764  345666 45556654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.87  E-value=0.0059  Score=51.23  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=27.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFG   69 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g   69 (293)
                      +-.+|+|.|++||||||+++.|.+... +..+ +...+++
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~-~~~~~p~   63 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDV-IMTREPG   63 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCE-EEECTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCc-eeecCCC
Confidence            456789999999999999999987521 4444 3444554

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.87  E-value=0.0045  Score=51.21  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++|.|+|||||+|....|.+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999863

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.87  E-value=0.0044  Score=51.65  Aligned_cols=22  Identities=32%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .|+|+|++||||||+.+.|.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.87  E-value=0.0051  Score=56.62  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=31.3

Q ss_pred             eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++.|+ ++|.....+.-....+++|+|+.|||||||++++..
T Consensus         6 ~l~~~~~-~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A            6 GLELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             EEEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCE-EEECCceeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4778888 577653322212346899999999999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=95.87  E-value=0.011  Score=48.96  Aligned_cols=92  Identities=16%  Similarity=-0.013  Sum_probs=51.3

Q ss_pred             cccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC-CCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736          151 VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV-DLVSPERSGDSLDELEKEIHEINSLAHVI  225 (293)
Q Consensus       151 ~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~-D~~~~~~~~~~~~~~~~~l~~lnp~a~i~  225 (293)
                      ...|++|||||+...... .....+.+...++..    ...|.+|+.||. |+.++-    ...++.+.|.- +.   + 
T Consensus       124 ~~TdglIfVVDSsD~~R~-eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am----s~~EI~e~L~L-~~---l-  193 (227)
T 3l82_B          124 EVVDGFIYVANAEAHKRH-EWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM----PCFYLAHELHL-NL---L-  193 (227)
T ss_dssp             HHCSEEEEEEECBTTCCC-CHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC----CHHHHHHHTTG-GG---G-
T ss_pred             cCCCEEEEEeccccHhHH-HHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC----CHHHHHHHcCC-cC---C-
Confidence            468999999999753210 000000000001111    123556666995 675543    34566665532 11   0 


Q ss_pred             EeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          226 RSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       226 ~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .      ....+.++||.+|+|+.+-.+|+...
T Consensus       194 ~------R~W~Iq~csA~TGeGL~EGLdWL~~~  220 (227)
T 3l82_B          194 N------HPWLVQDTEAETLTGFLNGIEWILEE  220 (227)
T ss_dssp             C------SCEEEEEEETTTCTTHHHHHHHHTTT
T ss_pred             C------CCEEEEEeECCCCcCHHHHHHHHHHH
Confidence            0      12568899999999999999999654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.85  E-value=0.0033  Score=65.98  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=35.7

Q ss_pred             eEEEccccccccCccc---CCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHE---NDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~---~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++++|++++|++++.   +.+-.+-     .++|+|+.|||||||++.|++-
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence            5999999999986543   3333332     4899999999999999999973

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=95.83  E-value=0.023  Score=50.06  Aligned_cols=40  Identities=28%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      ...||+|+|--|+||||..-.|...  ..|+||.++-.|++.
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~   88 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH   88 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4669999999999999998887653  469999999999853

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.82  E-value=0.0049  Score=53.59  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+|+|+|++||||||+.+.|.+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.82  E-value=0.0045  Score=51.05  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .|+|+|++||||||+.+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999985

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.82  E-value=0.0029  Score=54.07  Aligned_cols=28  Identities=32%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccC
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      ..+..+|+|.|..||||||+++.|.+..
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4566789999999999999999998754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.80  E-value=0.0079  Score=52.84  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=26.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d   67 (293)
                      .++++|+|++|||||||...|.+..   ...+++.|
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~---~~~iis~D   42 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL---PVELISVD   42 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS---CEEEEECC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC---CCcEEecc
Confidence            5688999999999999999998753   23566654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.78  E-value=0.0031  Score=59.88  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=27.2

Q ss_pred             ccccccCcccCCC--Ccee----EEEEEecCCCcHHHHHHHHHc
Q 022736           17 TTHEFSNSHENDD--VSVG----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        17 ~~~~~~~~~~~~~--~~~p----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+|.|+... +.-  -++|    +++|+|+.|||||||++.|..
T Consensus         5 ~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~G   47 (538)
T 3ozx_A            5 VIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAG   47 (538)
T ss_dssp             EEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence            467777633 332  2222    799999999999999999985

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.75  E-value=0.0054  Score=51.75  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      +..++.|+|++||||||+.+.|.+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999975

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.75  E-value=0.038  Score=46.37  Aligned_cols=39  Identities=23%  Similarity=0.084  Sum_probs=29.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      --+.+++|..||||||.+-+++..  ..|+++.++....+.
T Consensus        19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~   59 (234)
T 2orv_A           19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT   59 (234)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc
Confidence            348889999999999766555442  568899998876664

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.74  E-value=0.0019  Score=57.95  Aligned_cols=44  Identities=27%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             eEEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++..++++.|. ....+... ++     +++|+|++|||||||++.|++.
T Consensus        45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            466677777775 33334333 33     5899999999999999999875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.72  E-value=0.0067  Score=51.27  Aligned_cols=39  Identities=31%  Similarity=0.406  Sum_probs=29.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      -.+|+|.|.+||||||+++.|.+.  ..+.+++++..+|+.
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~   67 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG   67 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence            457899999999999999999764  345564556667764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.66  E-value=0.012  Score=51.88  Aligned_cols=37  Identities=14%  Similarity=0.171  Sum_probs=31.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +++|+|+||+|||||+..+...  .++.++.+++.+...
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~  108 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK  108 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCH
Confidence            7999999999999999988753  456889999988764

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=95.65  E-value=0.047  Score=49.46  Aligned_cols=40  Identities=20%  Similarity=0.032  Sum_probs=30.5

Q ss_pred             ceeEEEE-EecCCCcHHHHHHHHHcc--------CCCCeEEEEEcCCCC
Q 022736           31 SVGVTVI-TGFLGAGKSTLVNYILNG--------KHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i-~G~~gaGKTTlin~ll~~--------~~~~~vavv~~d~g~   70 (293)
                      +..+|+| .|-.|+||||+.-.|...        ..|++|.++..|+..
T Consensus       107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~  155 (398)
T 3ez2_A          107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS  155 (398)
T ss_dssp             SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred             CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence            3455554 588999999999888653        258999999999854

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.64  E-value=0.01  Score=48.20  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=24.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEE
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI   64 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv   64 (293)
                      ..++|.|++|+|||+|++.+...  ..+.++..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~   88 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV   88 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            56778999999999999999864  334444444

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.63  E-value=0.0089  Score=52.88  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=25.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d   67 (293)
                      ++++|+|++||||||+...|.+..   ...+++.|
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l---~~~iis~D   37 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL---PCELISVD   37 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc---CCcEEecc
Confidence            589999999999999999998643   24555544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.63  E-value=0.0057  Score=53.80  Aligned_cols=51  Identities=14%  Similarity=0.258  Sum_probs=31.3

Q ss_pred             cccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCC
Q 022736          149 SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE  202 (293)
Q Consensus       149 ~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~  202 (293)
                      ....+|.++.|+|+..........   ..+.........+-+||+||+|+.+..
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~~i---~r~L~~~~~~~~~~vivlnK~DL~~~~  133 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTALL---DRFLVLVEANDIQPIICITKMDLIEDQ  133 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHH---HHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred             HHHhCCEEEEEEeCCCCCCCHHHH---HHHHHHHHHCCCCEEEEEECCccCchh
Confidence            346899999999997433221110   002222223456779999999998753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.60  E-value=0.0068  Score=54.63  Aligned_cols=22  Identities=50%  Similarity=0.676  Sum_probs=19.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll   53 (293)
                      .++++|+|+.||||||+++++.
T Consensus        23 ~g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           23 SGITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3578899999999999999986

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.59  E-value=0.0065  Score=50.83  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      --+++|.|..||||||+++.|...
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            458999999999999999999865

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=95.58  E-value=0.02  Score=52.10  Aligned_cols=40  Identities=23%  Similarity=0.104  Sum_probs=22.7

Q ss_pred             ceeEEEE-EecCCCcHHHHHHHHHcc--------CCCCeEEEEEcCCCC
Q 022736           31 SVGVTVI-TGFLGAGKSTLVNYILNG--------KHGKRIAVILNEFGE   70 (293)
Q Consensus        31 ~~pvi~i-~G~~gaGKTTlin~ll~~--------~~~~~vavv~~d~g~   70 (293)
                      +..+|+| .|-.|+||||+.-.|...        ..|+++.++..|+..
T Consensus       110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~  158 (403)
T 3ez9_A          110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA  158 (403)
T ss_dssp             SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred             CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence            3445554 589999999998887543        358999999999864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.58  E-value=0.0083  Score=49.72  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=25.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~   65 (293)
                      +.+.++|.|++|+||||+++.+.+.  ..+.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~   87 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP   87 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            3567889999999999999999864  2244454444

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.56  E-value=0.0058  Score=51.19  Aligned_cols=41  Identities=22%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--C-CCCeEEEEEcCCCC
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--K-HGKRIAVILNEFGE   70 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~-~~~~vavv~~d~g~   70 (293)
                      .+..+|+|.|..||||||+++.|.+.  . .|.++..+..+||.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~   62 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG   62 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence            34567889999999999999999764  2 35566654677764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.53  E-value=0.0065  Score=52.43  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=19.5

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++.|++|+|||||++.+...
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            889999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.51  E-value=0.0061  Score=54.08  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...+++.|++|+|||||++.+...
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            467899999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.51  E-value=0.0074  Score=47.86  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=20.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.++|.|++|+|||++++.+.+.
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            345788999999999999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.51  E-value=0.0063  Score=63.80  Aligned_cols=45  Identities=16%  Similarity=0.352  Sum_probs=35.3

Q ss_pred             eEEEccccccccCcc---cCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSH---ENDDVSV-----GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~---~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++++|++++|++++   .+.+..+     -.++|+|+.|||||||++.|++.
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence            589999999997643   3333222     25999999999999999999974

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.49  E-value=0.012  Score=52.44  Aligned_cols=38  Identities=18%  Similarity=0.289  Sum_probs=32.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      -+++|+|+||+|||||+..++..  ..+.++++++.+...
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~   86 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSA   86 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence            37999999999999999988764  358899999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.47  E-value=0.0075  Score=58.09  Aligned_cols=46  Identities=20%  Similarity=0.179  Sum_probs=34.3

Q ss_pred             CceEEEccccccccCcccCCC-----CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736            9 PLAVRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~-----~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..++++.++++.|++.. +..     .+--+++|+|+.|||||||++.|...
T Consensus       355 ~~~l~~~~l~~~~~~~~-l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             CEEEEECCEEEECSSCE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ceEEEEeceEEEecceE-EEecccccCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35788999988886531 221     12237999999999999999999863

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.47  E-value=0.0078  Score=53.12  Aligned_cols=41  Identities=27%  Similarity=0.321  Sum_probs=29.1

Q ss_pred             eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHH
Q 022736           11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll   53 (293)
                      .+++.|+ ++|.+...+ ....++++|+|+.|||||||+.+|.
T Consensus         5 ~L~i~nf-r~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A            5 KLYLKGF-KSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEEESB-TTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred             EEEEeCc-eeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHH
Confidence            4677784 566432222 2233499999999999999999996

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.43  E-value=0.0073  Score=57.32  Aligned_cols=46  Identities=20%  Similarity=0.175  Sum_probs=34.2

Q ss_pred             CceEEEccccccccCcccCCC-----CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736            9 PLAVRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~-----~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +..++++++++.|++. .+..     .+--+++|+|+.|||||||++.|...
T Consensus       285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3578899998887653 1221     12247999999999999999999863

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.39  E-value=0.032  Score=47.78  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      .-++|.|++|+|||++++.+.+..
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            348889999999999999998653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.39  E-value=0.0089  Score=51.47  Aligned_cols=21  Identities=33%  Similarity=0.295  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++|+|++|||||||+..++.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.38  E-value=0.008  Score=50.85  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=19.5

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++|.|++|+|||||++.+...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.37  E-value=0.011  Score=49.17  Aligned_cols=38  Identities=37%  Similarity=0.445  Sum_probs=28.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      .+|+|.|..||||||.++.|.+.  ..+.+..++..+||.
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~   43 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG   43 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence            47889999999999999999764  335423366677764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.36  E-value=0.017  Score=47.38  Aligned_cols=31  Identities=29%  Similarity=0.353  Sum_probs=24.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d   67 (293)
                      ..++|+|++|+|||||...|.+.  +.  .+++.|
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~--g~--~iIsdD   65 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR--GH--RLIADD   65 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT--TC--EEEESS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh--CC--eEEecc
Confidence            34889999999999999999965  22  455544

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.35  E-value=0.025  Score=49.86  Aligned_cols=87  Identities=16%  Similarity=0.204  Sum_probs=48.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--C--CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH-
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--K--HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL-  107 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~--~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l-  107 (293)
                      .++.|.|++|+|||||.-.++..  .  .+.+++.+..+-+.    +......  -++..+....     .+++..+++ 
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~----~~~ra~~--lGvd~d~llv-----~~~~~~E~~~   97 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI----TPAYLRS--MGVDPERVIH-----TPVQSLEQLR   97 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC----CHHHHHH--TTCCGGGEEE-----EECSBHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh----hHHHHHH--hCCCHHHeEE-----EcCCCHHHHH
Confidence            37899999999999998777653  2  26788888766543    1111111  1111111110     112233344 


Q ss_pred             HHHHHHH--HhhcCCCCEEEEecCCC
Q 022736          108 VQALEQL--VQRKERLDHILLETTGL  131 (293)
Q Consensus       108 ~~~l~~l--~~~~~~~d~iiidt~G~  131 (293)
                      .+.+..+  + ....+++++||....
T Consensus        98 l~i~~~l~~i-~~~~~~lvVIDSI~a  122 (333)
T 3io5_A           98 IDMVNQLDAI-ERGEKVVVFIDSLGN  122 (333)
T ss_dssp             HHHHHHHHTC-CTTCCEEEEEECSTT
T ss_pred             HHHHHHHHHh-hccCceEEEEecccc
Confidence            3333333  2 246799999998873

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.30  E-value=0.0081  Score=53.97  Aligned_cols=24  Identities=33%  Similarity=0.293  Sum_probs=20.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      --.++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999853

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.30  E-value=0.01  Score=48.75  Aligned_cols=40  Identities=30%  Similarity=0.476  Sum_probs=27.2

Q ss_pred             eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHH
Q 022736           11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll   53 (293)
                      .+++.|+.. +......  ...++.+|+|+.||||||++.+|.
T Consensus         5 ~l~i~nf~~-~~~~~i~--f~~~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A            5 RVTVKNFRS-HSDTVVE--FKEGINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEESBTT-BSSEEEE--CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCcC-ccceEEE--eCCCeEEEEcCCCCCHHHHHHHHH
Confidence            355666642 2222222  234799999999999999999985

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.29  E-value=0.0069  Score=63.34  Aligned_cols=45  Identities=16%  Similarity=0.259  Sum_probs=35.3

Q ss_pred             eEEEccccccccCc---ccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~---~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+.+   +.+.+...-     +++|+|+.|||||||++.|++.
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~  439 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL  439 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999764   234433322     5999999999999999999874

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.29  E-value=0.017  Score=54.56  Aligned_cols=38  Identities=21%  Similarity=0.144  Sum_probs=26.4

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN   66 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~   66 (293)
                      ..+..+|+++|++||||||+.++|.+.  ..+.+..+++.
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~   71 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV   71 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence            334558899999999999999999753  12444444443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.26  E-value=0.035  Score=48.83  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      .+.++|.|++|+|||++++.+.+..
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4458899999999999999997653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.25  E-value=0.014  Score=61.13  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=36.0

Q ss_pred             eEEEccccccccCc---ccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~---~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++++++|+.+   +.+.+...-     +++|+|+.|||||||++.|.+-
T Consensus      1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp             CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred             cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999764   345544433     5999999999999999999864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.25  E-value=0.012  Score=49.25  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~   70 (293)
                      +++|.|.||+|||+|+..++.+   ..+.++.+++.+...
T Consensus        32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~   71 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA   71 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCH
Confidence            7999999999999999887642   336778888887654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.008  Score=55.89  Aligned_cols=43  Identities=16%  Similarity=0.074  Sum_probs=31.7

Q ss_pred             EEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++.|+++.|+.-. +.-.+-++++|+|+.|||||||++.|+.-
T Consensus       119 i~~~nl~~~y~~vs-l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          119 KYIYNLHFMLEKIR-MSNFEGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             HHHHHHHHHHHHHH-HHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             hhhhhhhehhhcCc-eEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            67778887775311 11224578999999999999999999863

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.21  E-value=0.0028  Score=58.59  Aligned_cols=46  Identities=13%  Similarity=0.076  Sum_probs=32.8

Q ss_pred             ceEEEcccccccc-CcccCCCC----ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           10 LAVRIDETTHEFS-NSHENDDV----SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~----~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -.++..++++.|. ....+...    +=-+++|+|++|||||||++.|.+.
T Consensus       130 ~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             CTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3467778877776 33333332    2236899999999999999999874

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.19  E-value=0.012  Score=49.47  Aligned_cols=36  Identities=22%  Similarity=0.140  Sum_probs=26.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~   70 (293)
                      ..+|+|.|..||||||+++.|.+...+   ..+..+++.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~---~~~~~Ep~~   37 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPE---WHVATEPVA   37 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT---SEEECCCGG
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcCC---Ceeeecchh
Confidence            347889999999999999999875433   234455553

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.16  E-value=0.0076  Score=49.76  Aligned_cols=22  Identities=23%  Similarity=0.149  Sum_probs=20.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -+++.|+||+||||++.+|++.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.13  E-value=0.01  Score=56.27  Aligned_cols=45  Identities=16%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             ceEEEccccccccCcccCCC----CceeEEEEEecCCCcHHHHHHHHHc
Q 022736           10 LAVRIDETTHEFSNSHENDD----VSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~----~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+++.++++.++.......    .+--+++|+|+.|||||||++.|..
T Consensus       268 ~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~G  316 (538)
T 3ozx_A          268 TKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG  316 (538)
T ss_dssp             EEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             ceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            46788888887765321110    1223799999999999999999986

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.12  E-value=0.0084  Score=53.19  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+.|-++|.|++|+||||+++.+.+
T Consensus        33 ~~~~~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           33 PRDLPHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             TTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            34455589999999999999999976

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.10  E-value=0.013  Score=49.20  Aligned_cols=23  Identities=30%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..+|+|+|++||||||+.+.|.+
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999974

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.10  E-value=0.016  Score=53.77  Aligned_cols=37  Identities=16%  Similarity=0.289  Sum_probs=31.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~   70 (293)
                      +++|+|+||+|||||+..++..   ..|.++.+++.+...
T Consensus       205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~  244 (454)
T 2r6a_A          205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA  244 (454)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence            7999999999999999998764   247789999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1nija1	222	c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-t	1e-39
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	1e-15
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	6e-09
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	7e-09

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  136 bits (342), Expect = 1e-39
 Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 22/217 (10%)

Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           + VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFGE        +++   G    + 
Sbjct: 3   IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE------VSVDDQLIGDRATQI 56

Query: 92  VELANGCICCTVKHSLVQAL----EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQL 147
             L NGCICC+  + L  AL    + L +   + D +++E TG+A+P P+    +  + L
Sbjct: 57  KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 116

Query: 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDS 207
                LD +I +VDA +   Q++++        A  Q+ +AD ++L K D+         
Sbjct: 117 CQRYLLDGVIALVDAVHADEQMNQFTI------AQSQVGYADRILLTKTDVAGE------ 164

Query: 208 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244
            ++L + +  IN+ A V       +DL  + N   + 
Sbjct: 165 AEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFM 201

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 72.7 bits (177), Expect = 1e-15
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 19/203 (9%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILN-------EFGEEIGVERAMINEGEGGA 86
           + V  G  G+GK+TL                +N          E     R  +   E   
Sbjct: 2   IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEE--- 58

Query: 87  LVEEWVELANGCICCT--VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD 144
           ++ E        +     +     + L ++++ ++  D++L++T G              
Sbjct: 59  IMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGV-- 116

Query: 145 DQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERS 204
            +L   +    ++ + D + L    D             ++    +  LNKVDL+S E  
Sbjct: 117 -RLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE- 174

Query: 205 GDSLDELEKEIHEINSLAHVIRS 227
               +   K   +I+ L   ++ 
Sbjct: 175 ---KERHRKYFEDIDYLTARLKL 194

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 52.3 bits (124), Expect = 6e-09
 Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 7/143 (4%)

Query: 34  VTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           +     + G GK+TL+  ++      G R  +I +   +    +    +     A   + 
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 92  VELANGCICCTVKHSLVQALEQLVQRKERL-----DHILLETTGLANPAPLASVLWLDDQ 146
           +  +        +    + L+                ++           +        +
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123

Query: 147 LESAVRLDSIITVVDAKNLLFQI 169
            E  V    +I V     L   +
Sbjct: 124 PEELVIDRHVIAVASDVPLNLDV 146

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 51.8 bits (123), Expect = 7e-09
 Identities = 19/141 (13%), Positives = 47/141 (33%), Gaps = 5/141 (3%)

Query: 34  VTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           V  + G+  +GK+TL+   +    + G R+  + +            ++           
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 62

Query: 92  VELANGCICCTVKHSLVQALEQLVQRKERL--DHILLETTGLANPAPLASVLWLDDQLES 149
             +    +        +  L+ ++     L  D +L+E        P   ++  ++   S
Sbjct: 63  TAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQE-RHPKVVLVRSEEDWAS 121

Query: 150 AVRLDSIITVVDAKNLLFQID 170
              L +I  V+  + L   + 
Sbjct: 122 LQHLANIRAVIAWEPLEGPLA 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	100.0
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.86
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.8
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.76
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.76
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.74
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.7
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.69
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.69
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.67
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.66
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.65
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.62
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.6
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.59
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.52
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.51
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.48
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.47
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.45
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.43
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.43
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.4
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.38
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.36
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.36
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.35
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.32
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.31
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.31
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.29
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.28
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.26
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.26
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.25
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.24
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.24
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.23
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.23
d1j8yf2	211	GTPase domain of the signal sequence recognition p	99.23
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.22
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.21
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.2
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.2
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.18
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.17
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.17
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.16
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.13
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.12
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.09
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.09
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.09
d2qy9a2	211	GTPase domain of the signal recognition particle r	99.08
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.07
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	99.07
d1okkd2	207	GTPase domain of the signal recognition particle r	99.07
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	99.06
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.05
d1vmaa2	213	GTPase domain of the signal recognition particle r	99.05
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.03
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.01
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.01
d1ls1a2	207	GTPase domain of the signal sequence recognition p	99.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.96
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.95
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.9
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.9
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.85
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.65
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.59
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.56
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.54
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.44
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.43
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.41
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.41
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.33
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.25
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.25
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.24
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.94
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	97.86
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.73
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.73
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	97.73
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.72
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.71
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.68
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.67
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.64
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.6
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.59
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.56
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.54
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.51
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.5
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.48
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.45
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.43
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.42
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.42
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.42
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.41
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.41
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.37
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.36
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.36
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.35
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.34
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.34
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.26
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.25
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.23
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.23
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.22
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.13
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.11
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.11
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.11
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.09
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.09
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.03
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.01
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.01
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.96
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.96
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.95
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.9
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.9
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.89
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.81
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.81
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.76
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.76
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.76
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.73
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.68
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.68
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.64
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.62
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.61
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.52
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.49
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.46
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.4
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.4
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.39
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.37
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.37
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.34
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.34
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.33
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.32
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.32
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.3
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.29
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.29
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.28
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.27
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.27
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.27
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.26
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.25
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.25
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.24
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.22
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.21
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.15
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.15
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.07
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.05
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.02
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.95
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.91
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.85
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.84
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.82
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.73
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.72
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.72
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.68
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.66
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.61
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.5
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.48
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.45
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.45
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.35
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.31
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	95.3
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.27
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.11
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	95.06
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.94
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.92
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.82
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.8
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.73
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.71
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.7
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.59
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.57
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.52
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.46
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.41
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.41
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.3
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.24
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.12
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.12
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.07
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.96
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.65
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.61
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.59
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.58
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.39
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.38
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.98
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.78
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.6
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.29
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.25
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.22
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.0
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.88
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.84
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.83
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	91.81
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.79
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.75
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.7
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	91.55
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.54
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.16
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	90.78
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.65
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.3
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	87.79
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.56
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	86.29
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.09
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.36
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.34
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.29

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-38  Score=268.69  Aligned_cols=197  Identities=35%  Similarity=0.625  Sum_probs=170.1

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      ++||++|+||+|||||||+|+|++...++|++|+.||+|. .++|...+....     ..+.++.+||+||+.++++..+
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~-~~iD~~~~~~~~-----~~~~el~~gcicc~~~~~~~~~   75 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELEDA   75 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS-CCEEEEEECTTS-----CEEEEETTSCEEECTTSCHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccc-hhhhhhhhcccc-----cceEEecCCcceeccchhHHHH
Confidence            6999999999999999999999998789999999999997 889887766432     3567899999999999999998


Q ss_pred             HHHHHhh----cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736          111 LEQLVQR----KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA  186 (293)
Q Consensus       111 l~~l~~~----~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~  186 (293)
                      +..++.+    ...+++++|||+|+++|.++...+..+..+.....++.+|+|||+.++......      ...+..|++
T Consensus        76 l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~------~~~~~~Qi~  149 (222)
T d1nija1          76 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVG  149 (222)
T ss_dssp             HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHH------CHHHHHHHH
T ss_pred             HHHHHHHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhh------hHHHHHHHH
Confidence            8776543    346899999999999999999877666666667788999999999998877654      356779999


Q ss_pred             ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc
Q 022736          187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA  245 (293)
Q Consensus       187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~  245 (293)
                      .||+||+||+|++++.      +++++.++.+||.++++.+.++.+++..++.+.+++-
T Consensus       150 ~AD~ivlNK~Dl~~~~------~~~~~~l~~lNP~a~Ii~~~~g~v~~~~ll~~~~~d~  202 (222)
T d1nija1         150 YADRILLTKTDVAGEA------EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFML  202 (222)
T ss_dssp             TCSEEEEECTTTCSCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTSC
T ss_pred             hCCcccccccccccHH------HHHHHHHHHHhCCCeEEEeeCCccCHHHhhCCCCCCc
Confidence            9999999999998643      6889999999999999999999999999988777654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=1.5e-23  Score=177.99  Aligned_cols=216  Identities=18%  Similarity=0.149  Sum_probs=127.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCcc-----ccchhhhhcCCCCcchhhhhhccCcceeec--cch
Q 022736           34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEI-----GVERAMINEGEGGALVEEWVELANGCICCT--VKH  105 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~-----~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~~~  105 (293)
                      ||+|+|++|||||||+++|++. ..++++++++.|+|++.     .+|...+...  ...........+||.||.  ..+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   79 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTV--EEIMREGYGPNGAIVESYDRLME   79 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCH--HHHHTTTCCHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHH--HHHhHhhhccCCchhhhhHhHHh
Confidence            7899999999999999999975 45788999999988621     2332222110  001123445567777775  233


Q ss_pred             hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          106 SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       106 ~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                      .+......+.......+++++|+||..++.......   ..+......+.+++++|+.....................|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~---~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~  156 (244)
T d1yrba1          80 KFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFG---VRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL  156 (244)
T ss_dssp             THHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHH---HHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhccccceeeeccccchhHHHHHHHH---HHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh
Confidence            343333333333456889999999987654433221   11223345667899999976554433221111123345678


Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEe---------------ecCCCCchhhcccccCCcchhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS---------------VRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~---------------~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                      ..|+++++||+|+++.++    ...+....+.+++....+..               ........+++++||++|+|+++
T Consensus       157 ~~~~ivvinK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~  232 (244)
T d1yrba1         157 GATTIPALNKVDLLSEEE----KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFED  232 (244)
T ss_dssp             TSCEEEEECCGGGCCHHH----HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred             CCCceeeeeccccccHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHH
Confidence            899999999999998643    22322222211110000000               00000123578899999999999


Q ss_pred             hhhhhhhh
Q 022736          251 LEGLLEEH  258 (293)
Q Consensus       251 l~~~l~~~  258 (293)
                      |.+++.++
T Consensus       233 L~~~l~e~  240 (244)
T d1yrba1         233 LETLAYEH  240 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=7.8e-20  Score=148.14  Aligned_cols=164  Identities=23%  Similarity=0.276  Sum_probs=108.3

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~  109 (293)
                      ...+.|+|+|.+|+|||||+|+|+    +.++++++..++++.........                             
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~----~~~~~~~~~~~~tt~~~~~~~~~-----------------------------   49 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLL----GVKVAPISPRPQTTRKRLRGILT-----------------------------   49 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEEEEEE-----------------------------
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHh----CCCceeecccCCcccccccceee-----------------------------
Confidence            457889999999999999999999    55666666666652111111000                             


Q ss_pred             HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hc
Q 022736          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AF  187 (293)
Q Consensus       110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~  187 (293)
                              ..+.++.++||||+..........+..........+|.+++|+|+.......+..     +...+++.  ..
T Consensus        50 --------~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~-----i~~~l~~~~~~~  116 (178)
T d1wf3a1          50 --------EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDEL-----VARALKPLVGKV  116 (178)
T ss_dssp             --------ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHH-----HHHHHGGGTTTS
T ss_pred             --------eeeeeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccccc-----hhhheeccccch
Confidence                    1335688999999877655554443344445556789999999998654332211     22233322  34


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.++|+||+|+.+..      +...+.+++..+.             ..++.+||++|.|+++|.+++.+.
T Consensus       117 piilv~NK~Dl~~~~------~~~~~~~~~~~~~-------------~~~~~iSA~~~~gi~~L~~~i~~~  168 (178)
T d1wf3a1         117 PILLVGNKLDAAKYP------EEAMKAYHELLPE-------------AEPRMLSALDERQVAELKADLLAL  168 (178)
T ss_dssp             CEEEEEECGGGCSSH------HHHHHHHHHTSTT-------------SEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             hhhhhhcccccccCH------HHHHHHHHhhccc-------------CceEEEecCCCCCHHHHHHHHHHh
Confidence            679999999997643      3344445544433             345778999999999999998764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=8.7e-19  Score=154.87  Aligned_cols=195  Identities=17%  Similarity=0.114  Sum_probs=113.1

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec---cc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT---VK  104 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~---~~  104 (293)
                      .+.++|+|+|+||||||||+++|++.  ..|.+++++..||.+ ......++.+..     +......+.|+++-   .+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss-~~~ggailgdr~-----rm~~~~~~~~~~ir~~~~~  125 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS-PVTGGSILGDKT-----RMNDLARAEAAFIRPVPSS  125 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------------CTTTTCTTEEEEEECC-
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCce-eeeccccccchh-----HHHHhcccccccccccccc
Confidence            46899999999999999999999875  458999999999987 222222322210     00001122333321   11


Q ss_pred             h---hHHHHHHHH--HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736          105 H---SLVQALEQL--VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP  179 (293)
Q Consensus       105 ~---~l~~~l~~l--~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~  179 (293)
                      +   .+.......  +....++|++||||.|........           ...+|.+++|+++..+......      ..
T Consensus       126 g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~i-----------~~~aD~~l~v~~P~~Gd~iq~~------k~  188 (327)
T d2p67a1         126 GHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEV-----------ARMVDCFISLQIAGGGDDLQGI------KK  188 (327)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH-----------HTTCSEEEEEECC------CCC------CH
T ss_pred             cccccchhhhhHHHHHHHhcCCCeEEEeeccccccchhh-----------hhccceEEEEecCCCchhhhhh------ch
Confidence            1   222222221  112468999999999977542211           1346778888887654321110      11


Q ss_pred             HHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       180 ~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                         .-++.||++|+||+|+............+...++.+++...        ....+++.+||++|+|+++|.+.+.++
T Consensus       189 ---gi~e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~--------~w~p~V~~~SA~~g~Gi~eL~~~I~~~  256 (327)
T d2p67a1         189 ---GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYD--------EWQPRVLTCSALEKRGIDEIWHAIIDF  256 (327)
T ss_dssp             ---HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBT--------TBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             ---hhhccccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCC--------CCcceeEEEEeeCCCCHHHHHHHHHHH
Confidence               23567999999999987754322233445555555544321        112468899999999999999888754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.76  E-value=3.4e-18  Score=150.88  Aligned_cols=193  Identities=16%  Similarity=0.150  Sum_probs=119.0

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhc-cCcceee-c--
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL-ANGCICC-T--  102 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l-~~gcicc-~--  102 (293)
                      ..+.++|+|+|+||||||||+++|++.  ..|.+++|+.+||.+ ......++.+.     + -+.++ .+.++|| +  
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss-~~~gg~llgdr-----~-rm~~~~~~~~~~ir~~~  120 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS-TRTGGSILGDK-----T-RMARLAIDRNAFIRPSP  120 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG-GSSCCCSSCCG-----G-GSTTGGGCTTEEEECCC
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccccc-HHHHhccccch-----h-hHHHHhcccceeecccc
Confidence            357899999999999999999999975  469999999999986 22223333221     1 12233 2333443 2  


Q ss_pred             cc---hhHHHHHHHHH--hhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC
Q 022736          103 VK---HSLVQALEQLV--QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS  177 (293)
Q Consensus       103 ~~---~~l~~~l~~l~--~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~  177 (293)
                      .+   +.+.......+  ....++|++||||.|.........           .-+|..++|+.+..+.....       
T Consensus       121 ~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~-----------~~~D~~v~v~~p~~GD~iQ~-------  182 (323)
T d2qm8a1         121 SSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA-----------DLTDFFLVLMLPGAGDELQG-------  182 (323)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH-----------TTSSEEEEEECSCC-------------
T ss_pred             ccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhh-----------cccceEEEEeeccchhhhhh-------
Confidence            22   23333333322  124689999999999765432221           23677888888876533211       


Q ss_pred             chHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHH----HHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736          178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELE----KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG  253 (293)
Q Consensus       178 ~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~----~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~  253 (293)
                        .....++.||++|+||+|+.+...   ....+.    ..+....+..        .....+++.+|+++++|++++.+
T Consensus       183 --~k~gilE~aDi~vvNKaD~~~~~~---~~~~~~~~~~~~l~~~~~~~--------~~~~p~V~~~Sa~~g~Gi~el~~  249 (323)
T d2qm8a1         183 --IKKGIFELADMIAVNKADDGDGER---RASAAASEYRAALHILTPPS--------ATWTPPVVTISGLHGKGLDSLWS  249 (323)
T ss_dssp             --CCTTHHHHCSEEEEECCSTTCCHH---HHHHHHHHHHHHHTTBCCSB--------TTBCCCEEEEBTTTTBSHHHHHH
T ss_pred             --hhhhHhhhhheeeEeccccccchH---HHHHHHHHHHHHhhcccccc--------cCCCCceEEEEecCCCCHHHHHH
Confidence              122456889999999999887642   122222    2222222221        01135688999999999999999


Q ss_pred             hhhhhc
Q 022736          254 LLEEHQ  259 (293)
Q Consensus       254 ~l~~~~  259 (293)
                      ++.++.
T Consensus       250 ~I~~~~  255 (323)
T d2qm8a1         250 RIEDHR  255 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=2.7e-18  Score=140.85  Aligned_cols=178  Identities=12%  Similarity=0.125  Sum_probs=106.0

Q ss_pred             cccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCccccchhhhhcCCCCcchhhhhhccC
Q 022736           18 THEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELAN   96 (293)
Q Consensus        18 ~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~-vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~   96 (293)
                      ..|..+.++.+...+|.|+|+|.+|||||||+|+|+    |.+ ++.....++.+..    ....               
T Consensus         9 ~~~~~~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~----g~~~~~~~~~~~~~t~~----~~~~---------------   65 (195)
T d1svia_           9 VISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLI----NRKNLARTSSKPGKTQT----LNFY---------------   65 (195)
T ss_dssp             EEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHH----TC-------------CC----EEEE---------------
T ss_pred             EEecCChhHCCCCCCCEEEEECCCCCCHHHHHHHhc----CCCceEEeecccceeee----cccc---------------
Confidence            346677788888889999999999999999999999    433 3343333332111    0000               


Q ss_pred             cceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcH---HHH--HhhhcchhhccccccccEEEEEcccchHHHHhh
Q 022736           97 GCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA---PLA--SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK  171 (293)
Q Consensus        97 gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~---~~~--~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~  171 (293)
                                           .......++|++|.....   ...  ...+..........++.+++++|+.......+.
T Consensus        66 ---------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~  124 (195)
T d1svia_          66 ---------------------IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV  124 (195)
T ss_dssp             ---------------------EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH
T ss_pred             ---------------------cccccceEEEEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhcccccccccc
Confidence                                 112345678887743321   111  111122334445567889999999764433221


Q ss_pred             hcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736          172 YRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  251 (293)
Q Consensus       172 ~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l  251 (293)
                      .     +...+.+.+.+.++|+||+|+++..+    .....+.+++....          -....++++||.+|+|+++|
T Consensus       125 ~-----~~~~l~~~~~piivv~NK~D~~~~~~----~~~~~~~~~~~l~~----------~~~~~~~~~SA~~~~gi~el  185 (195)
T d1svia_         125 Q-----MYEFLKYYGIPVIVIATKADKIPKGK----WDKHAKVVRQTLNI----------DPEDELILFSSETKKGKDEA  185 (195)
T ss_dssp             H-----HHHHHHHTTCCEEEEEECGGGSCGGG----HHHHHHHHHHHHTC----------CTTSEEEECCTTTCTTHHHH
T ss_pred             c-----cccccccccCcceechhhccccCHHH----HHHHHHHHHHHhcc----------cCCCCEEEEeCCCCCCHHHH
Confidence            1     34455666788999999999987653    34444433322110          01245788999999999999


Q ss_pred             hhhhhhh
Q 022736          252 EGLLEEH  258 (293)
Q Consensus       252 ~~~l~~~  258 (293)
                      .+++.+.
T Consensus       186 ~~~i~~~  192 (195)
T d1svia_         186 WGAIKKM  192 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=7.2e-18  Score=136.50  Aligned_cols=162  Identities=20%  Similarity=0.196  Sum_probs=98.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      |-|+|+|.+|||||||+|+|+    +.+..+. +..+.+.........                                
T Consensus         2 ~~VaivG~~nvGKSTLin~L~----~~~~~~~-~~~~~t~~~~~~~~~--------------------------------   44 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMT----RAHPKIA-PYPFTTLSPNLGVVE--------------------------------   44 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHC----SSCCEEC-CCTTCSSCCEEEEEE--------------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHh----CCCCcee-ccCCCceeeeeceee--------------------------------
Confidence            448999999999999999998    5555443 333321111100000                                


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHH-hhhcccCCchHH--HHHHhccC
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI-DKYRHLSSYPEA--IHQIAFAD  189 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~-~~~~~~~~~~~~--~~qi~~a~  189 (293)
                          ...+.++.++||||+........... ..++......+.+++++|+....... .....   ....  ......+.
T Consensus        45 ----~~~~~~~~~~DtpG~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p~  116 (180)
T d1udxa2          45 ----VSEEERFTLADIPGIIEGASEGKGLG-LEFLRHIARTRVLLYVLDAADEPLKTLETLRK---EVGAYDPALLRRPS  116 (180)
T ss_dssp             ----CSSSCEEEEEECCCCCCCGGGSCCSC-HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHH---HHHHHCHHHHHSCE
T ss_pred             ----ecCCCeEEEcCCCeeecCchHHHHHH-HHHHHHHHhhhhhhhhcccccccccchhhhhh---hhhccccccchhhh
Confidence                01335678999999876543332221 23445567788899999986543221 11000   0000  13345789


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ++|+||+|+.+.+    ....+.+.++.-               ..+++.+||++|+|+++|.+.+.+.
T Consensus       117 iiv~NK~D~~~~~----~~~~~~~~~~~~---------------~~~~~~iSA~tg~gid~L~~~i~~~  166 (180)
T d1udxa2         117 LVALNKVDLLEEE----AVKALADALARE---------------GLAVLPVSALTGAGLPALKEALHAL  166 (180)
T ss_dssp             EEEEECCTTSCHH----HHHHHHHHHHTT---------------TSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHH----HHHHHHHHHHhc---------------CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            9999999998754    234444444321               1357889999999999999888653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1e-17  Score=134.44  Aligned_cols=160  Identities=18%  Similarity=0.203  Sum_probs=92.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      .|+|+|.+|||||||+|+|+    +.+.+++...++.+.......+.                                 
T Consensus         2 ~V~liG~~n~GKSsLi~~L~----~~~~~~~~~~~~~t~~~~~~~~~---------------------------------   44 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV----KKKKAIVEDEEGVTRDPVQDTVE---------------------------------   44 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH----C--------------CCSEEEEE---------------------------------
T ss_pred             EEEEECCCCCCHHHHHHHHh----CCCcceecccCceeecccccccc---------------------------------
Confidence            58899999999999999999    66667777666652211111000                                 


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736          114 LVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI  192 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv  192 (293)
                          .....+.+.|++|+.....-. .......++.....+|.+++++|+.......+..     +...+.....+.++|
T Consensus        45 ----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~-----~~~~l~~~~~pviiv  115 (171)
T d1mkya1          45 ----WYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDES-----LADFLRKSTVDTILV  115 (171)
T ss_dssp             ----ETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHH-----HHHHHHHHTCCEEEE
T ss_pred             ----ccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccccc-----ccccccccccccccc
Confidence                234568899999975533221 1122223334446788899999987544332221     233445556788999


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +||+|++++.     ..++...+.++              ...+++++||++|.|+++|.+++.+.
T Consensus       116 ~NK~Dl~~~~-----~~~~~~~~~~~--------------~~~~~i~iSAk~g~gid~L~~~i~~~  162 (171)
T d1mkya1         116 ANKAENLREF-----EREVKPELYSL--------------GFGEPIPVSAEHNINLDTMLETIIKK  162 (171)
T ss_dssp             EESCCSHHHH-----HHHTHHHHGGG--------------SSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred             chhhhhhhhh-----hhHHHHHHHhc--------------CCCCeEEEecCCCCCHHHHHHHHHHh
Confidence            9999987532     12222222221              23466889999999999999998654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1e-17  Score=135.74  Aligned_cols=164  Identities=18%  Similarity=0.203  Sum_probs=95.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      .|+|+|++|||||||+|+|+    ++++. +++.+|+|.    ....                                 
T Consensus         2 ~I~lvG~~nvGKSsLin~l~----~~~~~-~~~~~g~T~----~~~~---------------------------------   39 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLT----GKKVR-RGKRPGVTR----KIIE---------------------------------   39 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH----SCCCS-SSSSTTCTT----SCEE---------------------------------
T ss_pred             EEEEECCCCCCHHHHHHHHh----CCCce-eeCCCCEee----cccc---------------------------------
Confidence            47899999999999999999    55443 455666522    1111                                 


Q ss_pred             HHhhcCCCCEEEEecCCCCCc----HHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcc--cC----CchH
Q 022736          114 LVQRKERLDHILLETTGLANP----APLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH--LS----SYPE  180 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~----~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~--~~----~~~~  180 (293)
                          ....++.|+||||+...    ....   ...+..........+|.+++|+|+............  ..    .+..
T Consensus        40 ----~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~  115 (184)
T d2cxxa1          40 ----IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQ  115 (184)
T ss_dssp             ----EEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             ----cccccceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHH
Confidence                01134679999996322    1111   111112223344568999999999765433222110  00    1123


Q ss_pred             HHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHH-hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIH-EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       181 ~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~-~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+.+...|.++|+||+|+++..      +.....+. .+....       . .....++++||++|+|+++|.+++.+
T Consensus       116 ~l~~~~~p~iiv~NK~D~~~~~------~~~~~~~~~~~~~~~-------~-~~~~~~~~vSA~~g~gi~~L~~~i~~  179 (184)
T d2cxxa1         116 FLRELDIPTIVAVNKLDKIKNV------QEVINFLAEKFEVPL-------S-EIDKVFIPISAKFGDNIERLKNRIFE  179 (184)
T ss_dssp             HHHHTTCCEEEEEECGGGCSCH------HHHHHHHHHHHTCCG-------G-GHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHcCCCEEEEEeeeehhhhH------HHHHHHHHHHhcccc-------c-ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445567889999999988643      22222222 111110       0 01234678999999999999988865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.67  E-value=6.4e-17  Score=136.02  Aligned_cols=190  Identities=14%  Similarity=0.131  Sum_probs=102.2

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      .|.|+|+|+|.+|||||||+|+|+.... -.+..-+....+. ...+........ +..      ..             
T Consensus         3 ~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~------~~-------------   61 (227)
T d1g7sa4           3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA-TEIPMDVIEGIC-GDF------LK-------------   61 (227)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTE-EEEEHHHHHHHS-CGG------GG-------------
T ss_pred             CCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccc-cccccccccccc-ccc------cc-------------
Confidence            4789999999999999999999986310 0011111111111 111111110000 000      00             


Q ss_pred             HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA  188 (293)
Q Consensus       109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a  188 (293)
                          ..-...+...+.||||||..+.        ..........+|.+|+||||..........     ....+.....|
T Consensus        62 ----~~~~~~~~~~~~~iDtPGh~~f--------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~-----~~~~~~~~~~p  124 (227)
T d1g7sa4          62 ----KFSIRETLPGLFFIDTPGHEAF--------TTLRKRGGALADLAILIVDINEGFKPQTQE-----ALNILRMYRTP  124 (227)
T ss_dssp             ----GCGGGGTCCEEEEECCCTTSCC--------TTSBCSSSBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCC
T ss_pred             ----ceeecccccccccccccceecc--------cccchhcccccceEEEEEecccCcccchhH-----HHHHhhcCCCe
Confidence                0000135567999999996432        122334556789999999998755443321     34455666789


Q ss_pred             CEEEEeCCCCCCCCCCcc------------------hHHHHHHHHHhhcCCCEEEEeecCC---CCchhhcccccCCcch
Q 022736          189 DVVILNKVDLVSPERSGD------------------SLDELEKEIHEINSLAHVIRSVRCQ---VDLSEVLNCRAYDATH  247 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~------------------~~~~~~~~l~~lnp~a~i~~~~~~~---~~~~~i~~~sa~~~~~  247 (293)
                      .++++||+|+++......                  ....+...+..+.............   ....+++++||++|.|
T Consensus       125 ~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~g  204 (227)
T d1g7sa4         125 FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEG  204 (227)
T ss_dssp             EEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTT
T ss_pred             EEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCC
Confidence            999999999987553210                  0111111111111111111111111   1234688999999999


Q ss_pred             hhhhhhhhhh
Q 022736          248 VTRLEGLLEE  257 (293)
Q Consensus       248 ~~~l~~~l~~  257 (293)
                      +++|.+.+..
T Consensus       205 id~Ll~~l~~  214 (227)
T d1g7sa4         205 IPELLTMLMG  214 (227)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=5.7e-17  Score=131.57  Aligned_cols=166  Identities=23%  Similarity=0.242  Sum_probs=102.1

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+|+|.+|+|||||+|+|+    +.+.+++.+.++++.......+.                                  
T Consensus        11 V~iiG~~~~GKSTLin~l~----~~~~~~~~~~~~t~~~~~~~~~~----------------------------------   52 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAIL----NKERALVSPIPGTTRDPVDDEVF----------------------------------   52 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHH----TSTTEEECCCC------CCEEEE----------------------------------
T ss_pred             EEEECCCCCCHHHHHHHHH----CCCcceeecccccccccceeeec----------------------------------
Confidence            6788999999999999999    66667777766652211111110                                  


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhh----hcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVL----WLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV  190 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~----~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i  190 (293)
                         .++.++.++|+||+..........    ...........+|++++|+|+..........     +...+.....+.+
T Consensus        53 ---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~-----~~~~~~~~~~~~i  124 (186)
T d1mkya2          53 ---IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR-----MAGLMERRGRASV  124 (186)
T ss_dssp             ---ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCEEE
T ss_pred             ---cCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhHHH-----HHHHHHHcCCcee
Confidence               234567899999975433222111    1112233445789999999997654332211     2334555677899


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +|+||+|+....+  ....++.+.++...+.          .+..+++++||++|.|+++|.+++.+.
T Consensus       125 ~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~i~~vSa~~g~gv~~L~~~i~~~  180 (186)
T d1mkya2         125 VVFNKWDLVVHRE--KRYDEFTKLFREKLYF----------IDYSPLIFTSADKGWNIDRMIDAMNLA  180 (186)
T ss_dssp             EEEECGGGSTTGG--GCHHHHHHHHHHHCGG----------GTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             eeccchhhhcchh--hhhhhHHHHHHHHhcc----------cCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999876543  2455666666554321          234568899999999999999988653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.7e-17  Score=131.57  Aligned_cols=154  Identities=21%  Similarity=0.284  Sum_probs=98.2

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+++|.+|||||||+|+|+    +.+..++.+.+|++...-...+.                                  
T Consensus         4 I~lvG~~nvGKSsLin~l~----~~~~~~~~~~~~~~~~~~~~~~~----------------------------------   45 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALA----GREAAIVTDIAGTTRDVLREHIH----------------------------------   45 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHH----TSCCSCCCSSTTCCCSCEEEEEE----------------------------------
T ss_pred             EEEECCCCCCHHHHHHHHh----CCCceEeecccccccceEeeeee----------------------------------
Confidence            5789999999999999999    66666777777752211100000                                  


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEE
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVI  192 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iiv  192 (293)
                         ..+..+.++|+||+.+...................+|.+++++|+..........    .+.......  ..+.++|
T Consensus        46 ---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~iilv  118 (161)
T d2gj8a1          46 ---IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAE----IWPEFIARLPAKLPITVV  118 (161)
T ss_dssp             ---ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHH----HCHHHHHHSCTTCCEEEE
T ss_pred             ---ccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhh----hhhhhhhhcccccceeec
Confidence               2344678999999877554443333333444456788999999987543211100    012222222  4577999


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +||+|+.++..                   .. ..    ....+++++||++|.|+++|.++|.+
T Consensus       119 ~NK~Dl~~~~~-------------------~~-~~----~~~~~~~~iSAk~~~gi~~L~~~l~~  159 (161)
T d2gj8a1         119 RNKADITGETL-------------------GM-SE----VNGHALIRLSARTGEGVDVLRNHLKQ  159 (161)
T ss_dssp             EECHHHHCCCC-------------------EE-EE----ETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cchhhhhhhHH-------------------HH-HH----hCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            99999876542                   11 11    12356889999999999999998865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=2.7e-17  Score=130.21  Aligned_cols=154  Identities=23%  Similarity=0.299  Sum_probs=98.3

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+++|.+|+|||||+|+|+    |.+.+++...+|.+........                                   
T Consensus         3 I~liG~~n~GKSSLin~l~----g~~~~~~~~~~~~~~~~~~~~~-----------------------------------   43 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLL----NEDRAIVTDIPGTTRDVISEEI-----------------------------------   43 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHH----HHTBCCCCCSSCCSSCSCCEEE-----------------------------------
T ss_pred             EEEECCCCCCHHHHHHHHh----CCCceeeeccccccccceeEEE-----------------------------------
Confidence            6789999999999999999    5556666777765211110000                                   


Q ss_pred             HhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-HhccCEEE
Q 022736          115 VQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-IAFADVVI  192 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-i~~a~iiv  192 (293)
                        ...+..+.++||||+..+. ...+....+.++.....+|.+++|+|+........        .....+ ...+.+++
T Consensus        44 --~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~--------~~~~~~~~~~~~i~~  113 (160)
T d1xzpa2          44 --VIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEED--------RKILERIKNKRYLVV  113 (160)
T ss_dssp             --EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHH--------HHHHHHHTTSSEEEE
T ss_pred             --EeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhh--------hhhhhhcccccceee
Confidence              0134557899999965432 12222222334455567899999999986543322        122222 24567888


Q ss_pred             EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +||+|+.+...    ...+...+   .+.             .+++++||++|+|+++|.+++.+
T Consensus       114 ~~k~d~~~~~~----~~~~~~~~---~~~-------------~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         114 INKVDVVEKIN----EEEIKNKL---GTD-------------RHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             EEECSSCCCCC----HHHHHHHH---TCS-------------TTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             eeeccccchhh----hHHHHHHh---CCC-------------CcEEEEECCCCCCHHHHHHHHHh
Confidence            99999987652    34444333   221             45788999999999999988753

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.60  E-value=6.7e-16  Score=124.85  Aligned_cols=115  Identities=18%  Similarity=0.162  Sum_probs=71.3

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV  199 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~  199 (293)
                      +..+.++|+||..+...        .........|.+++++|+..........     ....+...+.|.++|+||+|++
T Consensus        58 ~~~~~~~d~~g~~~~~~--------~~~~~l~~~d~~ilv~d~~~g~~~~~~~-----~~~~~~~~~~p~iiv~NKiD~~  124 (179)
T d1wb1a4          58 NYRITLVDAPGHADLIR--------AVVSAADIIDLALIVVDAKEGPKTQTGE-----HMLILDHFNIPIIVVITKSDNA  124 (179)
T ss_dssp             TEEEEECCCSSHHHHHH--------HHHHHTTSCCEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCBCEEEECTTSS
T ss_pred             Ccccccccccccccccc--------chhhhhhhccccccccccccccchhhhh-----hhhhhhhcCCcceecccccccc
Confidence            45578899998543221        1123345678899999998754332211     2344556678999999999998


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.++    .......++.+-.       ........+++++||++|+|+++|.+++.+.
T Consensus       125 ~~~~----~~~~~~~~~~~~~-------~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~  172 (179)
T d1wb1a4         125 GTEE----IKRTEMIMKSILQ-------STHNLKNSSIIPISAKTGFGVDELKNLIITT  172 (179)
T ss_dssp             CHHH----HHHHHHHHHHHHH-------HSSSGGGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CHHH----HHHHHHHHHHHHH-------HhhcCCCCeEEEEEccCCcCHHHHHHHHHhc
Confidence            7642    1222222222110       0011233567899999999999999988653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.60  E-value=2.2e-17  Score=134.17  Aligned_cols=164  Identities=17%  Similarity=0.182  Sum_probs=89.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      +-|+|+|++|||||||+|+|+    +.++++. +.++.+.........             +                  
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~----~~~~~~~-~~~~~T~~~~~~~~~-------------~------------------   45 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVS----SAKPKIA-DYHFTTLVPNLGMVE-------------T------------------   45 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSE----EECCEES-STTSSCCCCCEEEEE-------------C------------------
T ss_pred             CeEEEECCCCCCHHHHHHHHh----CCCCcee-cCCCceEeeeeceeE-------------e------------------
Confidence            558999999999999999999    5555443 444431211100000             0                  


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHH--HHhhhcccCCchHHH---HHHhc
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAI---HQIAF  187 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~--~~~~~~~~~~~~~~~---~qi~~  187 (293)
                           .++..+.++||||+.+........ ....+....+++.++++++......  ........ ......   .....
T Consensus        46 -----~~~~~~~~~DtpG~~~~~~~~~~~-~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k  118 (185)
T d1lnza2          46 -----DDGRSFVMADLPGLIEGAHQGVGL-GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTI-NQELSEYNLRLTER  118 (185)
T ss_dssp             -----SSSCEEEEEEHHHHHHHTTCTTTT-HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHH-HHHHHHSCSSTTTS
T ss_pred             -----cCCcEEEEecCCCcccCchHHHHH-HHHHHHHHHHhhhhhheeeecccccchhhhhhhhh-hhccchhhhhccCC
Confidence                 123457899999963211111111 1222344456677777776543211  00000000 000000   11235


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |.++|+||+|+.+..      ..+....+.+..             ..+++.+||++|+|+++|..++.+.
T Consensus       119 p~ivv~NK~Dl~~~~------~~~~~~~~~~~~-------------~~~v~~iSA~~g~Gi~~L~~~i~~~  170 (185)
T d1lnza2         119 PQIIVANKMDMPEAA------ENLEAFKEKLTD-------------DYPVFPISAVTREGLRELLFEVANQ  170 (185)
T ss_dssp             CBCBEEECTTSTTHH------HHHHHHHHHCCS-------------CCCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred             cchhhccccchHhHH------HHHHHHHHHhcc-------------CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            679999999998643      223333333322             1357899999999999998888654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.4e-15  Score=119.92  Aligned_cols=166  Identities=19%  Similarity=0.222  Sum_probs=102.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      -+++|+|+|.+|+|||||+|+|+    +.+++++++.++++.    ..+..                             
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~----~~~~~~~~~~~~t~~----~~~~~-----------------------------   46 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLL----GQKISITSRKAQTTR----HRIVG-----------------------------   46 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHH----TCSEEECCCCSSCCS----SCEEE-----------------------------
T ss_pred             cccEEEEECCCCCCHHHHHHHHh----CCCceeeccCCCceE----EEEEe-----------------------------
Confidence            47889999999999999999999    777888777666411    11100                             


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736          111 LEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD  189 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~  189 (293)
                          ........++++|++|........ ..............++.++++.|+.........      ....+.+...+.
T Consensus        47 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~------~~~~l~~~~~~~  116 (179)
T d1egaa1          47 ----IHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEM------VLNKLREGKAPV  116 (179)
T ss_dssp             ----EEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHH------HHHHHHSSSSCE
T ss_pred             ----eeecCCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccchhHHH------HHHHhhhccCce
Confidence                000233457788999976543222 222222223333567788889988754433222      122233344578


Q ss_pred             EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736          190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  259 (293)
Q Consensus       190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~  259 (293)
                      ++++||+|.+...+   .+......+..   .          +...+++++||++|.|+++|.+++.++.
T Consensus       117 i~v~~k~d~~~~~~---~~~~~~~~~~~---~----------~~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         117 ILAVNKVDNVQEKA---DLLPHLQFLAS---Q----------MNFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             EEEEESTTTCCCHH---HHHHHHHHHHT---T----------SCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             eeeeeeeeccchhh---hhhhHhhhhhh---h----------cCCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            99999999886541   22222222222   1          2234678899999999999999997653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.52  E-value=1.4e-14  Score=116.10  Aligned_cols=153  Identities=16%  Similarity=0.176  Sum_probs=91.5

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+++|.+|+|||||+|+|..    .+........|.    +...+.                                  
T Consensus        19 I~vvG~~~vGKSsLi~~l~~----~~~~~~~~~~~~----~~~~i~----------------------------------   56 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLAS----EDISHITPTQGF----NIKSVQ----------------------------------   56 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCC----SCCEEEEEETTE----EEEEEE----------------------------------
T ss_pred             EEEECCCCCCHHHHHHHHhc----CCCCcceeeeee----eEEEec----------------------------------
Confidence            67899999999999999984    333333332331    111111                                  


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH---HHHhccCEE
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQIAFADVV  191 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~qi~~a~ii  191 (293)
                         ..+..+.++|++|...........        ....+.+++++|.............   +....   ..-..|.++
T Consensus        57 ---~~~~~~~i~d~~g~~~~~~~~~~~--------~~~~~~ii~v~d~~d~~s~~~~~~~---~~~~~~~~~~~~~pill  122 (176)
T d1fzqa_          57 ---SQGFKLNVWDIGGQRKIRPYWRSY--------FENTDILIYVIDSADRKRFEETGQE---LTELLEEEKLSCVPVLI  122 (176)
T ss_dssp             ---ETTEEEEEEECSSCGGGHHHHHHH--------HTTCSEEEEEEETTCGGGHHHHHHH---HHHHTTCGGGTTCCEEE
T ss_pred             ---cCCeeEeEeeccccccchhHHHHH--------hhccceeEEeeccccccchhhhhhh---hhhhhhhhccCCCeEEE
Confidence               133567899999976654444322        2557889999998764332211000   11111   111347788


Q ss_pred             EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.||+|+.++.+    ...+.+.+......          .....++.+||++|+|++++.+||.+
T Consensus       123 v~nK~Dl~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         123 FANKQDLLTAAP----ASEIAEGLNLHTIR----------DRVWQIQSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             EEECTTSTTCCC----HHHHHHHTTGGGCC----------SSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EEEecccccccc----HHHHHHHHHHHHHH----------hcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            999999987653    34444443321111          01235788999999999999999864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=6.3e-15  Score=118.71  Aligned_cols=180  Identities=16%  Similarity=0.122  Sum_probs=91.1

Q ss_pred             ccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcc
Q 022736           19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC   98 (293)
Q Consensus        19 ~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gc   98 (293)
                      .|+++..+++....|-|+|+|.+|+|||||+|+|+    +.+........+.+.........                  
T Consensus         3 ~~~~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~----~~~~~~~~~~~~~~~~~~~~~~~------------------   60 (188)
T d1puia_           3 MSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT----NQKSLARTSKTPGRTQLINLFEV------------------   60 (188)
T ss_dssp             EEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTC----CC-------------CCEEEEEE------------------
T ss_pred             eCCCChhHCCCccCCEEEEECCCCCCHHHHHHHHh----CCCceEeecccccceeeccceec------------------
Confidence            35667777888889999999999999999999998    55555544444331110000000                  


Q ss_pred             eeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcH---HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhccc
Q 022736           99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA---PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHL  175 (293)
Q Consensus        99 icc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~---~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~  175 (293)
                                         ..+...+..++++.....   .................+..++.+.|+..........   
T Consensus        61 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  118 (188)
T d1puia_          61 -------------------ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ---  118 (188)
T ss_dssp             -------------------ETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH---
T ss_pred             -------------------ccccceeeeecccccchhhhhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHH---
Confidence                               011112222222211110   0000011111122223444556666665433222111   


Q ss_pred             CCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          176 SSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       176 ~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                        ..........+.++++||+|+++..+.....+.+++.++...+             ..+++++||++|.|+++|.++|
T Consensus       119 --~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~i~vSA~~g~Gid~L~~~i  183 (188)
T d1puia_         119 --MIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG-------------DVQVETFSSLKKQGVDKLRQKL  183 (188)
T ss_dssp             --HHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS-------------CEEEEECBTTTTBSHHHHHHHH
T ss_pred             --HHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCC-------------CCcEEEEeCCCCCCHHHHHHHH
Confidence              2233344566789999999998865332233344444443322             2457889999999999999887


Q ss_pred             hh
Q 022736          256 EE  257 (293)
Q Consensus       256 ~~  257 (293)
                      .+
T Consensus       184 ~~  185 (188)
T d1puia_         184 DT  185 (188)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.48  E-value=2.1e-14  Score=113.96  Aligned_cols=114  Identities=13%  Similarity=0.082  Sum_probs=65.3

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK  195 (293)
                      .+..+.++||+|........        .......+.+++++|..+..........   +...+.+   -..|.++|.||
T Consensus        44 ~~~~~~~~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~d~~~~~~~~~~---~~~~~~~~~~~~~p~iiv~nK  112 (165)
T d1ksha_          44 RGFKLNIWDVGGQKSLRSYW--------RNYFESTDGLIWVVDSADRQRMQDCQRE---LQSLLVEERLAGATLLIFANK  112 (165)
T ss_dssp             TTEEEEEEEECCSHHHHTTG--------GGGCTTCSEEEEEEETTCGGGHHHHHHH---HHHHHTCGGGTTCEEEEEEEC
T ss_pred             cccceeeeecCcchhhhhHH--------HhhhhhhhcceeeeecccchhHHHHHHh---hhhhhhhcccCCCceEEEEec
Confidence            34568899999953221111        1223567889999998764332221100   1112211   12467899999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+.+...    ..+....+..-+-..          ..-.++.+||++|+|++++.+||.+
T Consensus       113 ~Dl~~~~~----~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~g~gv~e~~~~l~~  160 (165)
T d1ksha_         113 QDLPGALS----CNAIQEALELDSIRS----------HHWRIQGCSAVTGEDLLPGIDWLLD  160 (165)
T ss_dssp             TTSTTCCC----HHHHHHHTTGGGCCS----------SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccccC----HHHHHHHHHhhhhhc----------CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99976542    344443332111110          1134788999999999999998854

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.47  E-value=5.1e-14  Score=112.69  Aligned_cols=112  Identities=15%  Similarity=0.069  Sum_probs=69.2

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~  196 (293)
                      ...+.++|+||..........        ....++.+++|+|.+...........   +.....   ....+.+++.||+
T Consensus        55 ~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~ii~v~D~s~~~~~~~~~~~---l~~~~~~~~~~~~piiiv~NK~  123 (173)
T d1e0sa_          55 NVKFNVWDVGGQDKIRPLWRH--------YYTGTQGLIFVVDCADRDRIDEARQE---LHRIINDREMRDAIILIFANKQ  123 (173)
T ss_dssp             TEEEEEEEESCCGGGHHHHGG--------GTTTCCEEEEEEETTCGGGHHHHHHH---HHHHHTSGGGTTCEEEEEEECT
T ss_pred             ceeeEEecCCCcchhhhHHHh--------hhcccceEEEEEecccchhHHHHHHH---HHHHhhhcccccceeeeeeecc
Confidence            356789999997765554432        23568899999999765433221100   111111   1235678999999


Q ss_pred             CCCCCCCCcchHHHHHHHHH--hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIH--EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~--~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+.++..    ...+...+.  .+...            ...++.+||++|+|++++.+||.++
T Consensus       124 Dl~~~~~----~~~i~~~~~~~~~~~~------------~~~~~e~SA~tg~gv~e~~~~l~~~  171 (173)
T d1e0sa_         124 DLPDAMK----PHEIQEKLGLTRIRDR------------NWYVQPSCATSGDGLYEGLTWLTSN  171 (173)
T ss_dssp             TSTTCCC----HHHHHHHTTGGGCCSS------------CEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             ccccccc----HHHHHHHHHHHHHHhC------------CCEEEEeeCCCCcCHHHHHHHHHHh
Confidence            9976542    244444432  12111            1246789999999999999998653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.45  E-value=3.9e-14  Score=115.81  Aligned_cols=113  Identities=16%  Similarity=0.207  Sum_probs=69.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-HHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~  198 (293)
                      +.+.+|||||..+.   .     .........+|.+++|||+..+. .+...     +.......+..+ .++++||+|+
T Consensus        78 ~~~~~iDtPGh~~f---~-----~~~~~~~~~~d~~ilvvda~~g~~~~~t~-----e~~~~~~~~~~~~iiv~inK~D~  144 (195)
T d1kk1a3          78 RRVSFIDAPGHEAL---M-----TTMLAGASLMDGAILVIAANEPCPRPQTR-----EHLMALQIIGQKNIIIAQNKIEL  144 (195)
T ss_dssp             EEEEEEECSSHHHH---H-----HHHHHCGGGCSEEEEEEETTSCSSCHHHH-----HHHHHHHHHTCCCEEEEEECGGG
T ss_pred             eeEeeeccchhhhh---h-----HHhhcccccccccccccchhhhhhhhhhH-----HHHHHHHHhcCccceeeeecccc
Confidence            45889999994322   1     22234456789999999998753 21111     023344555556 4667999999


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+..+.......+.+.+...++            ...+++++||++|+|+++|.+.+.+.
T Consensus       145 ~d~~~~~~~~~~~~~~~~~~~~------------~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         145 VDKEKALENYRQIKEFIEGTVA------------ENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSTT------------TTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhccccC------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            8764321223333344433322            11356899999999999998887653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.43  E-value=6.5e-14  Score=115.45  Aligned_cols=112  Identities=19%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-HHHhhhcccCCchHHHHHHhc-cCEEEEeCCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDLV  199 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D~~  199 (293)
                      .+.+|||||..+..        .........+|.+|+|||+.... .....     +.......++. +.++++||+|+.
T Consensus        87 ~~~iiD~PGH~df~--------~~~~~~~~~ad~ailvVda~~gi~~~~t~-----e~~~~~~~~~i~~iIV~vNK~Dl~  153 (205)
T d2qn6a3          87 RISFIDAPGHEVLM--------ATMLSGAALMDGAILVVAANEPFPQPQTR-----EHFVALGIIGVKNLIIVQNKVDVV  153 (205)
T ss_dssp             EEEEEECSCHHHHH--------HHHHHTSSCCSEEEEEEETTSCSSCHHHH-----HHHHHHHHTTCCCEEEEEECGGGS
T ss_pred             EEEEeccchHHHHH--------hhhhcceeccccccccccccccccchhHH-----HHHHHHHHcCCceeeeccccCCCc
Confidence            47899999965422        22234556789999999998753 22211     02333444454 457779999999


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      +.++.......+...++..++            .-.+++++||++|.|+++|.+.+.++
T Consensus       154 ~~~~~~~~~~~~~~~l~~~~~------------~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         154 SKEEALSQYRQIKQFTKGTWA------------ENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             CHHHHHHHHHHHHHHHTTSTT------------TTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhccccC------------CCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            765321222223333333222            11357899999999999998877654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=8.3e-14  Score=109.19  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=92.3

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+++|.+|||||||+|+|+..    +++.+....+.    ......                                  
T Consensus         3 I~liG~~nvGKSSLln~l~~~----~~~~~~~t~~~----~~~~~~----------------------------------   40 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND----RLATLQPTWHP----TSEELA----------------------------------   40 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS----CCCCCCCCCSC----EEEEEC----------------------------------
T ss_pred             EEEECCCCCCHHHHHHHHhCC----CCCeeeceeeE----eEEEec----------------------------------
Confidence            678999999999999999953    33322222222    111100                                  


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN  194 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN  194 (293)
                         ..+....+.|++|..........        .....+.+++++|..........................+.+++.|
T Consensus        41 ---~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~  109 (166)
T d2qtvb1          41 ---IGNIKFTTFDLGGHIQARRLWKD--------YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN  109 (166)
T ss_dssp             ---CTTCCEEEEECCCSGGGGGGGGG--------GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEE
T ss_pred             ---cCCeeEEEEeeccchhhhhhHhh--------hhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEec
Confidence               13456789999986544333221        2245677899999876443322110000000011223456789999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |.|+....    ...++.+.++..+....  . .........++.+||++|+|++++.+||.+
T Consensus       110 k~d~~~~~----~~~~i~~~~~~~~~~~~--~-~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         110 KIDAPNAV----SEAELRSALGLLNTTGS--Q-RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CTTSSSCC----CHHHHHHHHTCSSCCC------CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             cccccccC----CHHHHHHHhhhhhhhHH--H-hhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            99987653    34555555543322111  1 111112245789999999999999999965

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.40  E-value=1e-13  Score=111.82  Aligned_cols=153  Identities=17%  Similarity=0.139  Sum_probs=84.9

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++++|.+|||||||+++|..    ..........|.    ......                                  
T Consensus        20 I~lvG~~~vGKTsLi~~l~~----~~~~~~~~t~~~----~~~~~~----------------------------------   57 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQI----GEVVTTKPTIGF----NVETLS----------------------------------   57 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCC----SEEEEECSSTTC----CEEEEE----------------------------------
T ss_pred             EEEECCCCCCHHHHHHHHhc----CCCCccccccce----EEEEEe----------------------------------
Confidence            56799999999999999973    333332222221    110000                                  


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEE
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVV  191 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~ii  191 (293)
                         ..+..+.++|++|..........        .....+.+++|+|..+..........   +...+.   .-..|.++
T Consensus        58 ---~~~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~ii~v~d~~d~~s~~~~~~~---l~~~~~~~~~~~~pili  123 (182)
T d1moza_          58 ---YKNLKLNVWDLGGQTSIRPYWRC--------YYADTAAVIFVVDSTDKDRMSTASKE---LHLMLQEEELQDAALLV  123 (182)
T ss_dssp             ---ETTEEEEEEEEC----CCTTGGG--------TTTTEEEEEEEEETTCTTTHHHHHHH---HHHHTTSSTTSSCEEEE
T ss_pred             ---eCCEEEEEEecccccccchhHHh--------hhccceeEEEEeeecccccchhHHHH---HHHHHHhhccCCcceEE
Confidence               23456789999996543222221        22467889999998765332211000   011111   11247788


Q ss_pred             EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |.||+|+.+...    ..++...+....-.       .   ....++.+||++|+|++++.+||.+
T Consensus       124 v~NK~Dl~~~~~----~~~i~~~~~~~~~~-------~---~~~~~~e~SA~~g~gv~e~~~~l~~  175 (182)
T d1moza_         124 FANKQDQPGALS----ASEVSKELNLVELK-------D---RSWSIVASSAIKGEGITEGLDWLID  175 (182)
T ss_dssp             EEECTTSTTCCC----HHHHHHHTTTTTCC-------S---SCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred             EEEeeccccccC----HHHHHHHHHHHHHh-------h---CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            899999976432    24444443211100       0   0135789999999999999888754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.8e-13  Score=107.04  Aligned_cols=104  Identities=15%  Similarity=0.026  Sum_probs=59.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl  193 (293)
                      ..+.++||+|......+...+        ...+|++++|+|.++.......       ..+..++       ..|.++|.
T Consensus        48 ~~l~i~D~~g~e~~~~~~~~~--------~~~~d~~ilv~d~t~~~s~~~~-------~~~~~~i~~~~~~~~~piilvg  112 (168)
T d2gjsa1          48 ASLMVYDIWEQDGGRWLPGHC--------MAMGDAYVIVYSVTDKGSFEKA-------SELRVQLRRARQTDDVPIILVG  112 (168)
T ss_dssp             EEEEEEECC-------CHHHH--------HTSCSEEEEEEETTCHHHHHHH-------HHHHHHHHHHCC--CCCEEEEE
T ss_pred             cceeeeecccccccceecccc--------hhhhhhhceecccccccccccc-------ccccchhhcccccccceEEEee
Confidence            457899999975543333222        1467889999998865443221       1222222       23568888


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      ||+|+.+..+.  ...+.+...+..+               ...+.+||++|.|++++..++.
T Consensus       113 nK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1         113 NKSDLVRSREV--SVDEGRACAVVFD---------------CKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             ECTTCGGGCCS--CHHHHHHHHHHHT---------------SEEEECBTTTTBSHHHHHHHHH
T ss_pred             cccchhhhcch--hHHHHHHHHHhcC---------------CEEEEEeCCCCcCHHHHHHHHH
Confidence            99998765432  2344444444332               1357789999999988776653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.38  E-value=6.3e-13  Score=106.08  Aligned_cols=157  Identities=13%  Similarity=0.078  Sum_probs=86.9

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      |+|+|.+|||||||+++|.    +.+.+......+.    .....                                   
T Consensus        18 I~vvG~~~~GKSsLi~rl~----~~~~~~~~~~~~~----~~~~~-----------------------------------   54 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFS----MNEVVHTSPTIGS----NVEEI-----------------------------------   54 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHH----TTSCEEEECCSCS----SCEEE-----------------------------------
T ss_pred             EEEECCCCCCHHHHHHHHh----cCCCCccccccce----eEEEE-----------------------------------
Confidence            6689999999999999999    4444433333221    00000                                   


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN  194 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN  194 (293)
                        ...+.++.++|++|..........        .....+.+++++|..+....................-..+.++|.|
T Consensus        55 --~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n  124 (177)
T d1zj6a1          55 --VINNTRFLMWDIGGQESLRSSWNT--------YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN  124 (177)
T ss_dssp             --EETTEEEEEEECCC----CGGGHH--------HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred             --eecceEEEEeccccccccccchhh--------hhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEE
Confidence              013356788898885443322221        1234677889998875432211100000000001112457899999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+|+.....    ..++...+....-..          ....++.+||++|+|++++.+||.+.
T Consensus       125 K~Dl~~~~~----~~~i~~~~~~~~~~~----------~~~~~~~~Sa~tg~Gi~e~~~~L~~~  174 (177)
T d1zj6a1         125 KQDVKECMT----VAEISQFLKLTSIKD----------HQWHIQACCALTGEGLCQGLEWMMSR  174 (177)
T ss_dssp             CTTSTTCCC----HHHHHHHHTGGGCCS----------SCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             cccccccCc----HHHHHHHHHHHhhHh----------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            999876542    344444443221110          11357889999999999999998653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=9.6e-13  Score=105.08  Aligned_cols=105  Identities=15%  Similarity=0.071  Sum_probs=58.5

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----------hccCEE
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----------AFADVV  191 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----------~~a~ii  191 (293)
                      .+.++||+|..+.......        .....+.+++++|.........       ...+..++          ..|.++
T Consensus        53 ~~~~~d~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~~~~piil  117 (175)
T d1ky3a_          53 TMQVWDTAGQERFQSLGVA--------FYRGADCCVLVYDVTNASSFEN-------IKSWRDEFLVHANVNSPETFPFVI  117 (175)
T ss_dssp             EEEEECCC----------C--------CSTTCCEEEEEEETTCHHHHHT-------HHHHHHHHHHHHCCSCTTTCCEEE
T ss_pred             cceeeccCCchhhhhHHHH--------HhhccceEEEEeecccccccch-------hhhcchhhhhhhhhcccccCcEEE
Confidence            4578999997554333322        2246788999999986654321       12222222          346799


Q ss_pred             EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.||+|+.+..+. ...+..++..+.++              .-.++.+||++|.|++++..++.
T Consensus       118 v~nK~Dl~~~~~~-v~~~~~~~~~~~~~--------------~~~~~e~SA~~g~gv~e~f~~l~  167 (175)
T d1ky3a_         118 LGNKIDAEESKKI-VSEKSAQELAKSLG--------------DIPLFLTSAKNAINVDTAFEEIA  167 (175)
T ss_dssp             EEECTTSCGGGCC-SCHHHHHHHHHHTT--------------SCCEEEEBTTTTBSHHHHHHHHH
T ss_pred             Eecccchhhhhcc-hhHHHHHHHHHHcC--------------CCeEEEEeCCCCcCHHHHHHHHH
Confidence            9999998754321 12233333333332              12357799999999999876664

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.36  E-value=3.8e-13  Score=106.51  Aligned_cols=114  Identities=13%  Similarity=0.050  Sum_probs=64.1

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~  196 (293)
                      +..+.++|+||..........        -....+.+++|+|.............   +.....+   -..|.++|.||.
T Consensus        46 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~pi~lv~nK~  114 (164)
T d1zd9a1          46 NVTIKLWDIGGQPRFRSMWER--------YCRGVSAIVYMVDAADQEKIEASKNE---LHNLLDKPQLQGIPVLVLGNKR  114 (164)
T ss_dssp             TEEEEEEEECCSHHHHTTHHH--------HHTTCSEEEEEEETTCGGGHHHHHHH---HHHHHTCGGGTTCCEEEEEECT
T ss_pred             eEEEEEeeccccccccccccc--------cccccchhhcccccccccccchhhhh---hhhhhhhhcccCCcEEEEEecc
Confidence            345789999995332222211        12467889999998754322111000   1111111   134678999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      |+.+...    ...+.+.+....-..          ....++.+|+++|+|++++.+||.++
T Consensus       115 Dl~~~~~----~~~i~~~~~~~~~~~----------~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         115 DLPGALD----EKELIEKMNLSAIQD----------REICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             TSTTCCC----HHHHHHHTTGGGCCS----------SCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             ccchhhh----HHHHHHHHHHHHHHh----------CCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence            9876542    233433332111100          11346889999999999999988653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=6.4e-13  Score=105.20  Aligned_cols=109  Identities=12%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCEEEEeCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVILNKVDLV  199 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~iivlNK~D~~  199 (293)
                      ..+.++||+|..+.......        ....++.+++|+|..+...... ....  +.+...+. ..+.++|.||+|+.
T Consensus        51 ~~~~i~d~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~-~~~~--~~~i~~~~~~~~iilVgnK~Dl~  119 (164)
T d1z2aa1          51 VRLMLWDTAGQEEFDAITKA--------YYRGAQACVLVFSTTDRESFEA-ISSW--REKVVAEVGDIPTALVQNKIDLL  119 (164)
T ss_dssp             EEEEEECCTTGGGTTCCCHH--------HHTTCCEEEEEEETTCHHHHHT-HHHH--HHHHHHHHCSCCEEEEEECGGGG
T ss_pred             eeeeeeccCCccchhhhhhh--------hhccCceEEEEEeccchhhhhh-cccc--cccccccCCCceEEEeeccCCcc
Confidence            45789999995543222211        1246788999999987554322 1000  11122222 34667788999987


Q ss_pred             CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +..+.  ..+++++..+..+               ..++.+||++|.|++++..++.+
T Consensus       120 ~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1         120 DDSCI--KNEEAEGLAKRLK---------------LRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             GGCSS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSSHHHHHHHHH
T ss_pred             cceee--eehhhHHHHHHcC---------------CEEEEeccCCCcCHHHHHHHHHH
Confidence            65432  3445555555443               13578999999999988777643

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=3.2e-12  Score=101.57  Aligned_cols=108  Identities=14%  Similarity=0.085  Sum_probs=64.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||||..+...+...+        ...+|++|+|+|..+........ .   +.....+.   ..+.+++.||+|
T Consensus        54 ~~l~~wDt~G~e~~~~~~~~~--------~~~ad~~ilv~d~~~~~s~~~~~-~---~~~~~~~~~~~~~~iivv~nK~D  121 (169)
T d3raba_          54 IKLQIWDTAGQERYRTITTAY--------YRGAMGFILMYDITNEESFNAVQ-D---WSTQIKTYSWDNAQVLLVGNKCD  121 (169)
T ss_dssp             EEEEEEEECCSGGGHHHHHTT--------TTTCCEEEEEEETTCHHHHHTHH-H---HHHHHHHHCCSCCEEEEEEECTT
T ss_pred             EEEEEEECCCchhhHHHHHHH--------HhcCCEEEEEEECccchhhhhhh-h---hhhhhhcccCCcceEEEEEeecc
Confidence            346799999976544443322        24678999999998765432211 0   11111221   234567779999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+....  ..++.+...+..+               -..+.+||++|.|++++.+++.+
T Consensus       122 ~~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_         122 MEDERVV--SSERGRQLADHLG---------------FEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             CGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccccc--chhhhHHHHHHcC---------------CEEEEecCCCCcCHHHHHHHHHH
Confidence            8764432  2344444444432               13578999999999988777643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1e-11  Score=98.97  Aligned_cols=104  Identities=15%  Similarity=0.091  Sum_probs=66.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----------hccCE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----------AFADV  190 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----------~~a~i  190 (293)
                      ..+.++|++|..+.......        .....+.++++.|.........       ...+..++          ..|.+
T Consensus        55 ~~~~i~d~~g~~~~~~~~~~--------~~~~~~~~i~~~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~~~~pii  119 (174)
T d1wmsa_          55 VTMQIWDTAGQERFRSLRTP--------FYRGSDCCLLTFSVDDSQSFQN-------LSNWKKEFIYYADVKEPESFPFV  119 (174)
T ss_dssp             EEEEEEECCCCGGGHHHHGG--------GGTTCSEEEEEEETTCHHHHHT-------HHHHHHHHHHHHTCSCTTTSCEE
T ss_pred             eeEeeecccCcceehhhhhh--------hhhccceEEEEEeeecccccch-------hhhHHHHHHHHhccccCCCceEE
Confidence            45679999997665443321        2356788999999986543321       11122111          24679


Q ss_pred             EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +|.||+|+.+..   ...+++++..++.+.              -.++.+||++|.|++++.+++.
T Consensus       120 lVgnK~Dl~~~~---v~~~~~~~~~~~~~~--------------~~~~e~Sak~~~gI~e~f~~l~  168 (174)
T d1wmsa_         120 ILGNKIDISERQ---VSTEEAQAWCRDNGD--------------YPYFETSAKDATNVAAAFEEAV  168 (174)
T ss_dssp             EEEECTTCSSCS---SCHHHHHHHHHHTTC--------------CCEEECCTTTCTTHHHHHHHHH
T ss_pred             Eeccccchhhcc---CcHHHHHHHHHHcCC--------------CeEEEEcCCCCcCHHHHHHHHH
Confidence            999999986532   345566666665431              2357799999999998866653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.31  E-value=9.2e-13  Score=102.95  Aligned_cols=114  Identities=13%  Similarity=0.051  Sum_probs=67.1

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK  195 (293)
                      ....+.++|++|..........        .....+.+++++|..+..........   +.+...+   ...+.+++.||
T Consensus        42 ~~~~~~~~d~~g~~~~~~~~~~--------~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~k  110 (160)
T d1r8sa_          42 KNISFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRERVNEAREE---LMRMLAEDELRDAVLLVFANK  110 (160)
T ss_dssp             SSCEEEEEECCCCGGGHHHHHH--------HTTTCSEEEEEEETTCGGGHHHHHHH---HHHHHTCGGGTTCEEEEEEEC
T ss_pred             eeEEEEEecCCCcccchhhhhh--------hhccceeEEEEEEecChHHHHHHHHH---HHHHHHhhcccCceEEEEeec
Confidence            3466889999997765444322        22456788999998764432221100   1111111   12467899999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .|+.+...    ..++...........         .. ..++++||++|+|++++.+||.+
T Consensus       111 ~d~~~~~~----~~~i~~~~~~~~~~~---------~~-~~~~~~SAktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         111 QDLPNAMN----AAEITDKLGLHSLRH---------RN-WYIQATCATSGDGLYEGLDWLSN  158 (160)
T ss_dssp             TTSTTCCC----HHHHHHHTTGGGCSS---------CC-EEEEECBTTTTBTHHHHHHHHHH
T ss_pred             cccccccc----HHHHHHHHHHHHHhh---------CC-CEEEEeECCCCCCHHHHHHHHHh
Confidence            99887643    233333322111110         11 34789999999999999999864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.31  E-value=3e-12  Score=101.77  Aligned_cols=108  Identities=14%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++|++|..+...+...+.        ..++++++|+|..+........ ..  +.+..+..   ..+.++|.||+|
T Consensus        52 ~~l~i~d~~g~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s~~~~~-~~--~~~i~~~~~~~~~piiivgnK~D  120 (168)
T d1u8za_          52 VQIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFAATA-DF--REQILRVKEDENVPFLLVGNKSD  120 (168)
T ss_dssp             EEEEEEECCC---CHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHHCCTTSCEEEEEECGG
T ss_pred             ccccccccccccchhhhhhhcc--------cccceeEEEeeccchhhhhhHH-HH--HHHHHHhhCCCCCcEEEEecccc
Confidence            4577999999877655554332        4578899999998755432210 00  11111111   346788999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.+..+  ...++.++..+..+  +             .++.+||++|.|++++-.++.
T Consensus       121 l~~~~~--v~~~~~~~~~~~~~--~-------------~~~e~Sak~g~gv~e~f~~l~  162 (168)
T d1u8za_         121 LEDKRQ--VSVEEAKNRADQWN--V-------------NYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             GGGGCC--SCHHHHHHHHHHHT--C-------------EEEECCTTTCTTHHHHHHHHH
T ss_pred             cccccc--ccHHHHHHHHHHcC--C-------------eEEEEcCCCCcCHHHHHHHHH
Confidence            865432  23455566665554  1             347799999999998876653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=2.4e-12  Score=105.43  Aligned_cols=121  Identities=12%  Similarity=0.053  Sum_probs=67.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~  112 (293)
                      |.|+|+|.+|||||||+|+|+.+...         +++  ..+..  ..         .+                    
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~---------~~t--t~~~~--~~---------~~--------------------   41 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVR---------PTV--VSQEP--LS---------AA--------------------   41 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCC---------CBC--CCSSC--EE---------ET--------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC---------CeE--Eecce--EE---------EE--------------------
Confidence            78999999999999999999954211         121  10100  00         00                    


Q ss_pred             HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhccc-CCchHHH---HHHhcc
Q 022736          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHL-SSYPEAI---HQIAFA  188 (293)
Q Consensus       113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~-~~~~~~~---~qi~~a  188 (293)
                          ..++..+.++||||...........    ........+.++.++|+............. .......   .....|
T Consensus        42 ----~~~~~~~~l~D~~g~~~~~~~~~~~----~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p  113 (209)
T d1nrjb_          42 ----DYDGSGVTLVDFPGHVKLRYKLSDY----LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID  113 (209)
T ss_dssp             ----TGGGSSCEEEECCCCGGGTHHHHHH----HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             ----EeCCeEEEEEecccccchhhHHHHH----HHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCC
Confidence                0234567899999977544433222    123345667889999987532211110000 0001111   112356


Q ss_pred             CEEEEeCCCCCCCCC
Q 022736          189 DVVILNKVDLVSPER  203 (293)
Q Consensus       189 ~iivlNK~D~~~~~~  203 (293)
                      .++++||+|+.+...
T Consensus       114 iiiv~NK~D~~~~~~  128 (209)
T d1nrjb_         114 ILIACNKSELFTARP  128 (209)
T ss_dssp             EEEEEECTTSTTCCC
T ss_pred             eEEEEEeecccccCc
Confidence            799999999987653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.28  E-value=2.2e-12  Score=105.38  Aligned_cols=101  Identities=19%  Similarity=0.156  Sum_probs=60.3

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D  197 (293)
                      .+..+.++||||..+..        .........+|.+++||||..+.......     +......+..+ .++++||+|
T Consensus        64 ~~~~~~~iDtPGh~~f~--------~~~~~~~~~aD~allVVda~~G~~~QT~~-----~~~~a~~~~~~~iIv~iNK~D  130 (196)
T d1d2ea3          64 AARHYAHTDCPGHADYV--------KNMITGTAPLDGCILVVAANDGPMPQTRE-----HLLLARQIGVEHVVVYVNKAD  130 (196)
T ss_dssp             SSCEEEEEECSSHHHHH--------HHHHHTSSCCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCCEEEEEECGG
T ss_pred             ceeeEEeecCcchHHHH--------HHHHHHHhhcCeEEEEEEcCCCCchhHHH-----HHHHHHHhcCCcEEEEEeccc
Confidence            45678999999954321        22345567889999999998765543321     23334444544 566799999


Q ss_pred             CCCCCCCcchHHHH----HHHHHhhcCCCEEEEeecCCCCchhhcccccCCc
Q 022736          198 LVSPERSGDSLDEL----EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA  245 (293)
Q Consensus       198 ~~~~~~~~~~~~~~----~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~  245 (293)
                      +++.++   ..+.+    +..+..++...          ...+++++|+++|
T Consensus       131 ~~~~~~---~~~~i~~~i~~~l~~~~~~~----------~~~pii~iSa~~g  169 (196)
T d1d2ea3         131 AVQDSE---MVELVELEIRELLTEFGYKG----------EETPIIVGSALCA  169 (196)
T ss_dssp             GCSCHH---HHHHHHHHHHHHHHHTTSCT----------TTSCEEECCHHHH
T ss_pred             ccccHH---HHHHHHHHHHHHHHHhCCCc----------ccCEEEEEEcccc
Confidence            986432   23333    34444333211          1134678898887

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.8e-11  Score=97.27  Aligned_cols=106  Identities=17%  Similarity=0.088  Sum_probs=62.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||+|......+...        ....++.+++|+|..+.........    +...+.+.   ..+.++|.||+|
T Consensus        54 ~~l~i~Dt~G~e~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~----~~~~i~~~~~~~~~~ilvgnK~D  121 (171)
T d2ew1a1          54 VKLQIWDTAGQERFRSITQS--------YYRSANALILTYDITCEESFRCLPE----WLREIEQYASNKVITVLVGNKID  121 (171)
T ss_dssp             EEEEEEEECCSGGGHHHHGG--------GSTTCSEEEEEEETTCHHHHHTHHH----HHHHHHHHSCTTCEEEEEEECGG
T ss_pred             EEEEEEECCCchhhHHHHHH--------HHhccceEEEeeecccchhhhhhhh----hhhhhcccccccccEEEEEeecc
Confidence            45679999996544333322        1246788999999876543322110    11111111   235678889999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +.+..+.  ..++.....+..+               ..++.+||++|+|++++-.++
T Consensus       122 ~~~~~~v--~~~~~~~~~~~~~---------------~~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1         122 LAERREV--SQQRAEEFSEAQD---------------MYYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             GGGGCSS--CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHH
T ss_pred             cccccch--hhhHHHHHHHhCC---------------CEEEEEccCCCCCHHHHHHHH
Confidence            8754432  3344444444332               135789999999999885544

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.4e-11  Score=94.80  Aligned_cols=110  Identities=17%  Similarity=0.153  Sum_probs=67.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~  198 (293)
                      ..+-++|++|...........        ....+.+++++|..+........ ..  +......  -..+.++|.||+|+
T Consensus        49 ~~~~i~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~i~-~~--~~~~~~~~~~~~~iilvgnK~Dl  117 (164)
T d1yzqa1          49 IRLQLWDTAGQERFRSLIPSY--------IRDSAAAVVVYDITNVNSFQQTT-KW--IDDVRTERGSDVIIMLVGNKTDL  117 (164)
T ss_dssp             EEEEEEEECCSGGGGGGHHHH--------HTTCSEEEEEEETTCHHHHHTHH-HH--HHHHHHHHTTSSEEEEEEECTTC
T ss_pred             eeeeecccCCcchhccchHHH--------hhccceEEEeeccccccchhhhH-hh--HHHHHHhcCCCceEEEEecccch
Confidence            346799999976544333222        24678899999998765433211 00  1111111  13456778899998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+....  ..+...+..+..+               ..++.+||++|+|++++-.++.+.
T Consensus       118 ~~~~~~--~~~~~~~~~~~~~---------------~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1         118 ADKRQV--SIEEGERKAKELN---------------VMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             GGGCCS--CHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhhhhh--hHHHHHHHHHHcC---------------CEEEEecCCCCcCHHHHHHHHHHh
Confidence            764432  3455555555543               135789999999999998887653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.1e-11  Score=98.34  Aligned_cols=108  Identities=15%  Similarity=0.039  Sum_probs=66.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-----HhccCEEEEeC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-----IAFADVVILNK  195 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-----i~~a~iivlNK  195 (293)
                      ..+.++|++|............        ..++++++|+|..+........    .+...+.+     -..|.++|.||
T Consensus        50 ~~l~~~d~~g~~~~~~~~~~~~--------~~a~~~ilv~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~piilVgnK  117 (171)
T d2erxa1          50 CTLQITDTTGSHQFPAMQRLSI--------SKGHAFILVYSITSRQSLEELK----PIYEQICEIKGDVESIPIMLVGNK  117 (171)
T ss_dssp             EEEEEEECCSCSSCHHHHHHHH--------HHCSEEEEEEETTCHHHHHTTH----HHHHHHHHHHC---CCCEEEEEEC
T ss_pred             ceeccccccccccccccccccc--------cceeEEEEEeecccccchhccc----chhhhhhhhhccCCCCcEEEEeec
Confidence            4567899999877655553322        4578899999998754432210    01111111     12356888899


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +|+....+.  ..++.++..+..+               -.++.+||++|.|++++-..+..
T Consensus       118 ~Dl~~~~~v--~~~e~~~~~~~~~---------------~~~~e~Sak~~~~v~e~f~~l~~  162 (171)
T d2erxa1         118 CDESPSREV--QSSEAEALARTWK---------------CAFMETSAKLNHNVKELFQELLN  162 (171)
T ss_dssp             GGGGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccccccc--cHHHHHHHHHHcC---------------CeEEEEcCCCCcCHHHHHHHHHH
Confidence            998654332  3344555445443               13567999999999988766543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=2.3e-11  Score=97.82  Aligned_cols=108  Identities=18%  Similarity=0.075  Sum_probs=63.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN  194 (293)
                      ..+.++||+|..+.....        ......++++++++|........... ..  +.....+.      ..|.++|.|
T Consensus        51 ~~~~~~d~~g~~~~~~~~--------~~~~~~~~~~i~~~d~~~~~~~~~~~-~~--~~~i~~~~~~~~~~~ip~ilv~n  119 (184)
T d1vg8a_          51 VTMQIWDTAGQERFQSLG--------VAFYRGADCCVLVFDVTAPNTFKTLD-SW--RDEFLIQASPRDPENFPFVVLGN  119 (184)
T ss_dssp             EEEEEEEECSSGGGSCSC--------CGGGTTCSEEEEEEETTCHHHHHTHH-HH--HHHHHHHHCCSSGGGSCEEEEEE
T ss_pred             EEEEeeecCCcccccccc--------cccccCccEEEEeecccchhhhhcch-hh--HHHHHHHhccccccCCCEEEEEE
Confidence            457789999965432221        12235678999999997644322110 00  11111111      236799999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+|+.+...   ..+.........+ .             -..+.+||++|.|++++.+++.
T Consensus       120 K~Dl~~~~~---~~~~~~~~~~~~~-~-------------~~~~e~Sak~~~gI~e~f~~l~  164 (184)
T d1vg8a_         120 KIDLENRQV---ATKRAQAWCYSKN-N-------------IPYFETSAKEAINVEQAFQTIA  164 (184)
T ss_dssp             CTTSSCCCS---CHHHHHHHHHHTT-S-------------CCEEECBTTTTBSHHHHHHHHH
T ss_pred             eecccccch---hHHHHHHHHHHhc-C-------------CeEEEEcCCCCcCHHHHHHHHH
Confidence            999876442   3344443333322 1             2356789999999998887764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=1e-11  Score=101.96  Aligned_cols=82  Identities=24%  Similarity=0.278  Sum_probs=53.9

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVD  197 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D  197 (293)
                      .+..+.||||||..+...        ........+|.+|+||||..+.......     ........+.+. ++++||+|
T Consensus        65 ~~~~i~iiDtPGh~df~~--------~~~~~~~~aD~avlVvda~~Gv~~qt~~-----~~~~~~~~gi~~iiv~iNK~D  131 (204)
T d2c78a3          65 AKRHYSHVDCPGHADYIK--------NMITGAAQMDGAILVVSAADGPMPQTRE-----HILLARQVGVPYIVVFMNKVD  131 (204)
T ss_dssp             SSCEEEEEECCCSGGGHH--------HHHHHHTTCSSEEEEEETTTCCCHHHHH-----HHHHHHHTTCCCEEEEEECGG
T ss_pred             CCeEEEEEeCCCchhhHH--------HHHHHHHHCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEEecc
Confidence            467899999999776432        2245567899999999998766554321     344555566665 45699999


Q ss_pred             CCCCCCCcchHHHHHHHHH
Q 022736          198 LVSPERSGDSLDELEKEIH  216 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~  216 (293)
                      +++.++   ..+++.+.++
T Consensus       132 ~~~~~~---~~~~~~~~i~  147 (204)
T d2c78a3         132 MVDDPE---LLDLVEMEVR  147 (204)
T ss_dssp             GCCCHH---HHHHHHHHHH
T ss_pred             cCCCHH---HHHHHHHHHH
Confidence            987542   3444444444

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.8e-12  Score=101.92  Aligned_cols=104  Identities=15%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl  193 (293)
                      ..+.|+||||..+...+...+        ....+++++|+|.........       ...++.++       ..+.+++.
T Consensus        56 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~~i~~~~  120 (177)
T d1x3sa1          56 AKLAIWDTAGQERFRTLTPSY--------YRGAQGVILVYDVTRRDTFVK-------LDNWLNELETYCTRNDIVNMLVG  120 (177)
T ss_dssp             EEEEEEEECSSGGGCCSHHHH--------HTTCCEEEEEEETTCHHHHHT-------HHHHHHHHTTCCSCSCCEEEEEE
T ss_pred             cEEEEEECCCchhhHHHHHHH--------HhcCCEEEEEEECCCcccccc-------chhhhhhhcccccccceeeEEEe
Confidence            457899999965543322222        246788999999876544322       12233332       23458899


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ||.|.....   ....+..+..+..+               -.++.+||++|+|++++.+++.+
T Consensus       121 nk~d~~~~~---v~~~~~~~~~~~~~---------------~~~~e~Sa~tg~gv~e~f~~l~~  166 (177)
T d1x3sa1         121 NKIDKENRE---VDRNEGLKFARKHS---------------MLFIEASAKTCDGVQCAFEELVE  166 (177)
T ss_dssp             ECTTSSSCC---SCHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ecccccccc---ccHHHHHHHHHHCC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            999976543   23455555555443               13678999999999998877643

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.8e-11  Score=95.64  Aligned_cols=107  Identities=13%  Similarity=0.044  Sum_probs=63.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||+|...........        ....+++++|+|..+....... ..   +.....+.   ..+.+++.||+|
T Consensus        53 ~~l~i~D~~g~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~~-~~---~~~~~~~~~~~~~~iilvgnK~D  120 (166)
T d1z0fa1          53 IKLQIWDTAGQERFRAVTRSY--------YRGAAGALMVYDITRRSTYNHL-SS---WLTDARNLTNPNTVIILIGNKAD  120 (166)
T ss_dssp             EEEEEEECTTGGGTCHHHHHH--------HHTCSEEEEEEETTCHHHHHTH-HH---HHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEeccCCchhHHHHHHHH--------hcCCcEEEEEeccCchHHHHHH-HH---HHHHHHhhccccceEEEEccccc
Confidence            457899999965443333222        1467889999998765432211 00   11111111   235677789999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +......  ..++.++..+..+               ..++.+||++|.|++++-.++.
T Consensus       121 l~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1         121 LEAQRDV--TYEEAKQFAEENG---------------LLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             CGGGCCS--CHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHH
T ss_pred             chhhccc--HHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHH
Confidence            8654432  3344555554432               2357899999999998866553

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=3.3e-11  Score=97.80  Aligned_cols=107  Identities=17%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.|+||+|......+...        ....++++|+|+|.+..........    +...+.+.   ..+.++|.||+|
T Consensus        55 ~~l~i~Dt~G~e~~~~~~~~--------~~~~a~~~i~v~d~t~~~s~~~~~~----~~~~~~~~~~~~~~iilv~nK~D  122 (194)
T d2bcgy1          55 VKLQIWDTAGQERFRTITSS--------YYRGSHGIIIVYDVTDQESFNGVKM----WLQEIDRYATSTVLKLLVGNKCD  122 (194)
T ss_dssp             EEEEEECCTTTTTTTCCCGG--------GGTTCSEEEEEEETTCHHHHHHHHH----HHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEEECCCchhhHHHHHH--------HhccCCEEEEEEeCcchhhhhhHhh----hhhhhhhcccCCceEEEEEeccc
Confidence            45778999996543222211        1246788999999986544332210    11112222   235689999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.+....  ..+......+..+               ...+.+||++|.|++++..++.
T Consensus       123 ~~~~~~~--~~~~~~~~~~~~~---------------~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1         123 LKDKRVV--EYDVAKEFADANK---------------MPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             CTTTCCS--CHHHHHHHHHHTT---------------CCEEECCTTTCTTHHHHHHHHH
T ss_pred             cccccch--hHHHHhhhhhccC---------------cceEEEecCcCccHHHHHHHHH
Confidence            8765432  3333333333322               2357789999999998876664

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.9e-11  Score=96.27  Aligned_cols=108  Identities=12%  Similarity=0.004  Sum_probs=65.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D  197 (293)
                      ..+.++||||......+.+..        ...++++++|+|..+.........    +......   -..|.++|.||+|
T Consensus        54 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~----~~~~~~~~~~~~~piivv~nK~D  121 (174)
T d2bmea1          54 VKLQIWDTAGQERFRSVTRSY--------YRGAAGALLVYDITSRETYNALTN----WLTDARMLASQNIVIILCGNKKD  121 (174)
T ss_dssp             EEEEEEEECCSGGGHHHHHTT--------STTCSEEEEEEETTCHHHHHTHHH----HHHHHHHHSCTTCEEEEEEECGG
T ss_pred             eeEEEEECCCchhhhhhHHHH--------hhhCCEEEEEEecccchhHHHHhh----hhcccccccCCceEEEEEEeccc
Confidence            357799999976654444322        246788999999987544322100    1111111   1357899999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +....+.  ......+..+..+               -.++.+||++|+|++++..++.+
T Consensus       122 ~~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1         122 LDADREV--TFLEASRFAQENE---------------LMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             GGGGCCS--CHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccchhch--hhhHHHHHHHhCC---------------CEEEEeeCCCCcCHHHHHHHHHH
Confidence            8654432  2333333333322               13578899999999998777643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.4e-12  Score=100.48  Aligned_cols=107  Identities=21%  Similarity=0.095  Sum_probs=65.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~  196 (293)
                      ..+.++|++|............        ..++.++++.|.++.........    +.....+    -..|.++|.||+
T Consensus        51 ~~l~~~d~~g~~~~~~~~~~~~--------~~a~~~ilv~d~~~~~s~~~~~~----~~~~~~~~~~~~~~piilvgnK~  118 (167)
T d1kaoa_          51 SVLEILDTAGTEQFASMRDLYI--------KNGQGFILVYSLVNQQSFQDIKP----MRDQIIRVKRYEKVPVILVGNKV  118 (167)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHHH----HHHHHHHHTTTSCCCEEEEEECG
T ss_pred             EeeccccCCCccccccchHHHh--------hcccceeeeeeecchhhhhhhhc----hhhhhhhhccCCCCCEEEEEEcc
Confidence            4567899999776655443322        45788999999986544332110    1111111    124678899999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+.+....  ...+.....+..+               ..++.+||++|.|++++-.++.
T Consensus       119 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_         119 DLESEREV--SSSEGRALAEEWG---------------CPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             GGGGGCCS--CHHHHHHHHHHHT---------------SCEEEECTTCHHHHHHHHHHHH
T ss_pred             chhhcccc--hHHHHHHHHHHcC---------------CeEEEECCCCCcCHHHHHHHHH
Confidence            98764432  3344444444433               1357899999999998877664

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.4e-12  Score=102.93  Aligned_cols=105  Identities=14%  Similarity=0.097  Sum_probs=64.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl  193 (293)
                      ..+.+.||+|..+...+...+        ...++++|+|+|..........       ..+..++       ..+.++|.
T Consensus        64 ~~~~i~dt~G~e~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-------~~~~~~~~~~~~~~~~~iilv~  128 (186)
T d2f7sa1          64 VHLQLWDTAGQERFRSLTTAF--------FRDAMGFLLMFDLTSQQSFLNV-------RNWMSQLQANAYCENPDIVLIG  128 (186)
T ss_dssp             EEEEEEEEESHHHHHHHHHHH--------HTTCCEEEEEEETTCHHHHHHH-------HHHHHTCCCCCTTTCCEEEEEE
T ss_pred             EEeccccCCcchhhHHHHHHH--------HhcCCEEEEEEeccccccceee-------eeccchhhhhccCCCceEEEEe
Confidence            456799999964433333222        1467899999998875433211       1122111       12457888


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      ||+|+....+.  ..++..+..+..+               -.++.+||++|+|++++..++.+
T Consensus       129 nK~Dl~~~~~v--~~~e~~~~~~~~~---------------~~~~e~Sak~~~~i~e~f~~l~~  175 (186)
T d2f7sa1         129 NKADLPDQREV--NERQARELADKYG---------------IPYFETSAATGQNVEKAVETLLD  175 (186)
T ss_dssp             ECTTCGGGCCS--CHHHHHHHHHHTT---------------CCEEEEBTTTTBTHHHHHHHHHH
T ss_pred             eeccchhhhcc--hHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999765432  3345555555443               13578999999999988877643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=9.9e-12  Score=101.88  Aligned_cols=119  Identities=15%  Similarity=0.187  Sum_probs=64.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      -|+|+|++|||||||+|+|+.....    ..  .++  .+.+...+.             +.+                 
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~----~~--~~t--~~~~~~~~~-------------~~~-----------------   43 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYR----DT--QTS--ITDSSAIYK-------------VNN-----------------   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC----CB--CCC--CSCEEEEEE-------------CSS-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC----cc--cCC--eeEEEEEEE-------------Eee-----------------
Confidence            4789999999999999999964211    11  111  111111111             000                 


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hcc
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA  188 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a  188 (293)
                          .....+.++|++|.........    .   ......+.+++|+|+.+...........  ....+.+.     ..|
T Consensus        44 ----~~~~~~~~~d~~g~~~~~~~~~----~---~~~~~~~~~i~v~D~~d~~~~~~~~~~~--l~~~l~~~~~~~~~~p  110 (207)
T d2fh5b1          44 ----NRGNSLTLIDLPGHESLRFQLL----D---RFKSSARAVVFVVDSAAFQREVKDVAEF--LYQVLIDSMALKNSPS  110 (207)
T ss_dssp             ----TTCCEEEEEECCCCHHHHHHHH----H---HHGGGEEEEEEEEETTTHHHHHHHHHHH--HHHHHHHHHTSTTCCE
T ss_pred             ----eeeeeeeeeeccccccccchhh----h---hhhhhccccceEEEcccccccHHHHHHH--HHHHHHhHHHhhcCCc
Confidence                1234577899999643211110    1   1124567899999998755432221000  11122111     135


Q ss_pred             CEEEEeCCCCCCCCC
Q 022736          189 DVVILNKVDLVSPER  203 (293)
Q Consensus       189 ~iivlNK~D~~~~~~  203 (293)
                      .+|++||+|+.++..
T Consensus       111 ilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1         111 LLIACNKQDIAMAKS  125 (207)
T ss_dssp             EEEEEECTTSTTCCC
T ss_pred             EEEEEECcccCCCCC
Confidence            678889999987654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.23  E-value=7.5e-12  Score=99.89  Aligned_cols=167  Identities=13%  Similarity=0.116  Sum_probs=86.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ..=|+++|.+|||||||+++|..    .++.......+.    +...+.                               
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~----~~~~~~~~~~~~----~~~~~~-------------------------------   53 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKD----DRLGQHVPTLHP----TSEELT-------------------------------   53 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC----C------CCCCC----SCEEEE-------------------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC----CCCcceeccccc----ceeEEE-------------------------------
Confidence            34477899999999999999984    322222221111    111010                               


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH---HHHhcc
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQIAFA  188 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~qi~~a  188 (293)
                            ..+..+.+.++.|........        .......+.+++++|.............   .....   .....+
T Consensus        54 ------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d~~d~~~~~~~~~~---~~~~~~~~~~~~~~  116 (186)
T d1f6ba_          54 ------IAGMTFTTFDLGGHIQARRVW--------KNYLPAINGIVFLVDCADHERLLESKEE---LDSLMTDETIANVP  116 (186)
T ss_dssp             ------ETTEEEEEEEECC----CCGG--------GGGGGGCSEEEEEEETTCGGGHHHHHHH---HHHHHTCGGGTTSC
T ss_pred             ------ecccccccccccchhhhhhHH--------hhhhcccceeeeeeeccCccchHHHHHH---HHHhhcccccCCCc
Confidence                  122345677777755432222        1223456778888987754322211100   00011   112357


Q ss_pred             CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEee--cCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV--RCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~--~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      .+++.||.|+....    ....+...+.............  ......-.++++||++|+|++++.+||.+.
T Consensus       117 ~li~~~K~D~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         117 ILILGNKIDRPEAI----SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             EEEEEECTTSTTCC----CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             eEEEEeccCccccC----CHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            89999999987654    2355555543322111100000  000011257889999999999999998753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=99.23  E-value=5.4e-11  Score=97.64  Aligned_cols=169  Identities=15%  Similarity=0.153  Sum_probs=89.8

Q ss_pred             cccCCCCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceee
Q 022736           24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC  101 (293)
Q Consensus        24 ~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc  101 (293)
                      ...+.+++.-|++++|++|+||||.+-+|...  ..+.+++++..|..- .+--..+-..+       +  .+.-.+...
T Consensus         4 ~~~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R-~ga~eQL~~~a-------~--~l~v~~~~~   73 (211)
T d1j8yf2           4 PKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR-PAALEQLQQLG-------Q--QIGVPVYGE   73 (211)
T ss_dssp             CCCSCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS-HHHHHHHHHHH-------H--HHTCCEECC
T ss_pred             cccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc-cchhHHHHHhc-------c--ccCcceeec
Confidence            34455666778889999999999999998763  458899999998653 22111111000       0  000011111


Q ss_pred             ccchhHHHHHHHH--HhhcCCCCEEEEecCCCCCcH---HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccC
Q 022736          102 TVKHSLVQALEQL--VQRKERLDHILLETTGLANPA---PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLS  176 (293)
Q Consensus       102 ~~~~~l~~~l~~l--~~~~~~~d~iiidt~G~~~~~---~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~  176 (293)
                      ....++...+.+-  .....+.|+|||||+|.....   .....+  . .+......+-+++|+|+.........     
T Consensus        74 ~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el--~-~~~~~~~~~~~~LVl~a~~~~~~~~~-----  145 (211)
T d1j8yf2          74 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEM--K-NIYEAIKPDEVTLVIDASIGQKAYDL-----  145 (211)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHH--H-HHHHHHCCSEEEEEEEGGGGGGHHHH-----
T ss_pred             ccchhhhHHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHH--H-HHHhhcCCceEEEEEecccCcchHHH-----
Confidence            2333455444431  112467899999999964321   111111  1 11222344568999999876554432     


Q ss_pred             CchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736          177 SYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI  218 (293)
Q Consensus       177 ~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l  218 (293)
                        .....+....+-+++||.|-...      .-.+.+.....
T Consensus       146 --~~~~~~~~~~~~lI~TKlDet~~------~G~~l~~~~~~  179 (211)
T d1j8yf2         146 --ASKFNQASKIGTIIITKMDGTAK------GGGALSAVAAT  179 (211)
T ss_dssp             --HHHHHHHCTTEEEEEECTTSCSC------HHHHHHHHHTT
T ss_pred             --HhhhhcccCcceEEEecccCCCc------ccHHHHHHHHH
Confidence              11222223456799999996542      45555555544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=97.09  Aligned_cols=108  Identities=13%  Similarity=0.076  Sum_probs=63.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++|++|..+.......+.        ..++++++|+|..+....... ...  +.......   ..|.++|.||+|
T Consensus        53 ~~~~~~d~~g~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s~~~~-~~~--~~~~~~~~~~~~~p~ilvgnK~D  121 (171)
T d2erya1          53 ARLDILDTAGQEEFGAMREQYM--------RTGEGFLLVFSVTDRGSFEEI-YKF--QRQILRVKDRDEFPMILIGNKAD  121 (171)
T ss_dssp             EEEEEEECC----CCHHHHHHH--------HHCSEEEEEEETTCHHHHHTH-HHH--HHHHHHHHTSSCCSEEEEEECTT
T ss_pred             cccccccccccccccccccccc--------cccceEEEeeccccccchhhH-HHH--hHHHHhhcccCCCCEEEEEeccc
Confidence            3467999999776544443222        457889999998875443221 000  11122221   245688899999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.+....  ..++..+..+.++               -..+.+||++|.|++++...+.
T Consensus       122 l~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1         122 LDHQRQV--TQEEGQQLARQLK---------------VTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             CTTSCSS--CHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHH
T ss_pred             hhhhccc--hHHHHHHHHHHcC---------------CEEEEEcCCCCcCHHHHHHHHH
Confidence            8765332  3455566555543               1346799999999998876664

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.4e-11  Score=96.09  Aligned_cols=107  Identities=15%  Similarity=0.099  Sum_probs=63.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH---HHHhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQIAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~qi~~a~iivlNK~D  197 (293)
                      ..+.++|++|..+...+...        .....+++++|.|.++.........    +....   .....+.+++.||+|
T Consensus        52 ~~~~~~d~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~Sf~~~~~----~~~~~~~~~~~~~~~ilvgnK~D  119 (167)
T d1z08a1          52 VNLAIWDTAGQERFHALGPI--------YYRDSNGAILVYDITDEDSFQKVKN----WVKELRKMLGNEICLCIVGNKID  119 (167)
T ss_dssp             EEEEEEECCCC-------CC--------SSTTCSEEEEEEETTCHHHHHHHHH----HHHHHHHHHGGGSEEEEEEECGG
T ss_pred             ceeeeeccCCcceecccchh--------hccCCceeEEEEeCCchhHHHhhhh----hhhhcccccccccceeeeccccc
Confidence            45779999997765444322        2246788999999987554322100    11111   122335677789999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.+..+.  ..++.++..+..+               ...+.+||++|.|++++-.++.
T Consensus       120 l~~~~~v--~~~e~~~~a~~~~---------------~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1         120 LEKERHV--SIQEAESYAESVG---------------AKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             GGGGCCS--CHHHHHHHHHHTT---------------CEEEEEBTTTTBSHHHHHHHHH
T ss_pred             ccccccc--chHHHHHHHHHcC---------------CeEEEEecCCCcCHHHHHHHHH
Confidence            8765432  3456666665543               1346789999999998877664

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=4.8e-11  Score=94.37  Aligned_cols=107  Identities=15%  Similarity=0.129  Sum_probs=65.1

Q ss_pred             CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCCCC
Q 022736          122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVDL  198 (293)
Q Consensus       122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~D~  198 (293)
                      .+.++||+|......+...+.        ...+++++++|..+........ .   +.....   .-..+.++|.||+|+
T Consensus        54 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~-~---~~~~~~~~~~~~~~iilvgnK~Dl  121 (167)
T d1z0ja1          54 KFLIWDTAGLERFRALAPMYY--------RGSAAAIIVYDITKEETFSTLK-N---WVRELRQHGPPSIVVAIAGNKCDL  121 (167)
T ss_dssp             EEEEEEECCSGGGGGGTHHHH--------TTCSEEEEEEETTCHHHHHHHH-H---HHHHHHHHSCTTSEEEEEEECTTC
T ss_pred             ceeeeecCCchhhhHHHHHHH--------hhccceEEEeeechhhhhhhHH-H---hhhhhhhccCCcceEEEecccchh
Confidence            456899999766544443222        4578899999987654332210 0   111111   123467899999998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      .+...  ...++.++..+..+               ..++.+||++|.|++++..++.+
T Consensus       122 ~~~~~--v~~~~~~~~~~~~~---------------~~~~e~SAk~~~nV~e~f~~l~~  163 (167)
T d1z0ja1         122 TDVRE--VMERDAKDYADSIH---------------AIFVETSAKNAININELFIEISR  163 (167)
T ss_dssp             GGGCC--SCHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccc--hhHHHHHHHHHHcC---------------CEEEEEecCCCCCHHHHHHHHHH
Confidence            75433  23345555555443               13578999999999998776643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.8e-11  Score=97.52  Aligned_cols=108  Identities=14%  Similarity=0.002  Sum_probs=64.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHHHH---hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQI---AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~qi---~~a~iivlNK~  196 (293)
                      ..+.++||+|..+.......+        ....+++++|+|...........    .+.. .....   ..+.++|.||+
T Consensus        54 ~~l~~~d~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~p~ilvgnK~  121 (173)
T d2fn4a1          54 ARLDILDTAGQEEFGAMREQY--------MRAGHGFLLVFAINDRQSFNEVG----KLFTQILRVKDRDDFPVVLVGNKA  121 (173)
T ss_dssp             EEEEEEECCCTTTTSCCHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHTSSCCCEEEEEECG
T ss_pred             eeeeccccccccccccccchh--------hccceeeeeecccccccccchhh----hhhHHHHHHhccCCCceEEEEEee
Confidence            456789999976543333222        14578899999998765432210    0111 11211   23668899999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.....  ..........+..+               -..+.+||++|.|++++..++.+
T Consensus       122 Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~e~Sak~g~gv~e~f~~l~~  165 (173)
T d2fn4a1         122 DLESQRQ--VPRSEASAFGASHH---------------VAYFEASAKLRLNVDEAFEQLVR  165 (173)
T ss_dssp             GGGGGCC--SCHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             chhhccc--cchhhhhHHHHhcC---------------CEEEEEeCCCCcCHHHHHHHHHH
Confidence            9875432  13344444444332               13567999999999988776643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.1e-12  Score=100.06  Aligned_cols=107  Identities=13%  Similarity=0.091  Sum_probs=63.6

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      +.+-++||+|......+..        .....++++++|.|..+........ ..  +.......   ..|.++|.||+|
T Consensus        52 ~~l~i~d~~g~~~~~~~~~--------~~~~~~d~~ilv~d~~~~~s~~~~~-~~--~~~i~~~~~~~~~piilvgnK~D  120 (167)
T d1xtqa1          52 YHLQLVDTAGQDEYSIFPQ--------TYSIDINGYILVYSVTSIKSFEVIK-VI--HGKLLDMVGKVQIPIMLVGNKKD  120 (167)
T ss_dssp             EEEEEEECCCCCTTCCCCG--------GGTSSCCEEEEEEETTCHHHHHHHH-HH--HHHHHHHHCSSCCCEEEEEECTT
T ss_pred             EEeeecccccccccccccc--------hhhhhhhhhhhhcccchhhhhhhhh-hh--hhhhhhcccccccceeeeccccc
Confidence            4567899999765432221        1224688899999998765432210 00  11122222   235788999999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      +....+.  ..++.++..+.++               ...+.+||++|.|++++-..+
T Consensus       121 l~~~r~v--~~~~~~~~a~~~~---------------~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1         121 LHMERVI--SYEEGKALAESWN---------------AAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             CGGGCCS--CHHHHHHHHHHHT---------------CEEEECCTTCHHHHHHHHHHH
T ss_pred             cccccch--hHHHHHHHHHHcC---------------CEEEEEecCCCCCHHHHHHHH
Confidence            8754332  3445555555443               124678999999999886543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.9e-11  Score=97.55  Aligned_cols=107  Identities=16%  Similarity=0.095  Sum_probs=61.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      +.+.|+||+|..+.....        .......+++++|+|............    +...+.+.   ..|.++|.||+|
T Consensus        53 ~~~~i~d~~g~e~~~~~~--------~~~~~~~~~~i~v~d~~~~~S~~~~~~----~~~~i~~~~~~~~piilvgnK~D  120 (175)
T d2f9la1          53 IKAQIWDTAGQERYRRIT--------SAYYRGAVGALLVYDIAKHLTYENVER----WLKELRDHADSNIVIMLVGNKSD  120 (175)
T ss_dssp             EEEEEEECSSGGGTTCCC--------HHHHTTCSEEEEEEETTCHHHHHTHHH----HHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEecccCCcHHHHHHH--------HHHhhccCeEEEEEECCCcccchhHHH----HHHHHHHhcCCCCcEEEEEeeec
Confidence            456799999953321111        112256788999999986543322110    11112222   236788889999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +.+....  .........+..+               ..++.+||++|+|++++..++.
T Consensus       121 l~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1         121 LRHLRAV--PTDEARAFAEKNN---------------LSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             CGGGCCS--CHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccc--hHHHHHHhhcccC---------------ceEEEEecCCCcCHHHHHHHHH
Confidence            8765322  2233333333222               2457899999999998866553

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.3e-11  Score=95.21  Aligned_cols=106  Identities=16%  Similarity=0.068  Sum_probs=65.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-H---hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-I---AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-i---~~a~iivlNK~  196 (293)
                      ..+.++|++|..........+.        ...+++++|.|..+........    .+...+.+ .   ..+.++|.||+
T Consensus        51 ~~l~~~d~~~~~~~~~~~~~~~--------~~~~~~iiv~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~  118 (166)
T d1ctqa_          51 CLLDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINNTKSFEDIH----QYREQIKRVKDSDDVPMVLVGNKC  118 (166)
T ss_dssp             EEEEEEEECCCGGGHHHHHHHH--------HHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTCSSCCEEEEEECT
T ss_pred             eeeeeeeccCccccccchhhhh--------hcccccceeecccccccHHHHH----HHHHHHHHhcCCCCCeEEEEeccc
Confidence            3467889999776554443222        4567899999998754432210    01111211 1   24688999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+.....   ..+.+++..+..+               -.++.+||++|+|++++..++.
T Consensus       119 Dl~~~~~---~~~~~~~~~~~~~---------------~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_         119 DLAARTV---ESRQAQDLARSYG---------------IPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             TCSCCCS---CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccc---cHHHHHHHHHHhC---------------CeEEEEcCCCCcCHHHHHHHHH
Confidence            9865442   3344444444432               1367899999999998876664

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.20  E-value=8.5e-12  Score=103.73  Aligned_cols=106  Identities=17%  Similarity=0.160  Sum_probs=65.4

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL  198 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~  198 (293)
                      +..+.||||||..+...-        .......+|.+++||||..+.......     .......++.+ .++++||+|+
T Consensus        88 ~~~~~iiD~PGH~dfv~~--------~~~g~~~aD~ailVvda~~G~~~Qt~e-----~~~~~~~~gv~~iiv~vNK~D~  154 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRN--------MATGASTCDLAIILVDARYGVQTQTRR-----HSYIASLLGIKHIVVAINKMDL  154 (222)
T ss_dssp             SEEEEEEECCCSGGGHHH--------HHHHHTTCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEEECTTT
T ss_pred             ceEEEEEeccchhhhhhh--------hccccccCceEEEEeccccCcccchHH-----HHHHHHHcCCCEEEEEEEcccc
Confidence            356889999997654322        234556789999999998765544321     33444555533 6889999999


Q ss_pred             CCCCCCcchHHHHHHH----HHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736          199 VSPERSGDSLDELEKE----IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~----l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                      ++..+  .......+.    ++.++-..          .--.++|+||++|.|+-+
T Consensus       155 ~~~~~--~~~~~~~~~l~~~~~~~~~~~----------~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         155 NGFDE--RVFESIKADYLKFAEGIAFKP----------TTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTSCH--HHHHHHHHHHHHHHHTTTCCC----------SEEEEEECCTTTCTTTSS
T ss_pred             ccccc--eehhhhHHHHhhhhHhhccCC----------CceEEEEEEcccCccCCc
Confidence            87543  233333333    33332110          112458999999998743

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.5e-11  Score=95.47  Aligned_cols=108  Identities=14%  Similarity=0.043  Sum_probs=62.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~  198 (293)
                      ..+-|+||+|......+...        .....|++++|+|..+......... .  +......  ...+.++|.||+|.
T Consensus        56 ~~l~i~Dt~G~e~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~iilv~~k~d~  124 (170)
T d2g6ba1          56 VKLQMWDTAGQERFRSVTHA--------YYRDAHALLLLYDVTNKASFDNIQA-W--LTEIHEYAQHDVALMLLGNKVDS  124 (170)
T ss_dssp             EEEEEEECCCC--------C--------CGGGCSEEEEEEETTCHHHHHTHHH-H--HHHHHHHSCTTCEEEEEEECCST
T ss_pred             EEEEEEECCCchhhHHHHHH--------hhcCCceeEEEecCCcccchhhhhh-h--hhhhhhccCCCceEEEEEeeech
Confidence            34679999997554333321        2246788999999987654322110 0  1111111  23467888899998


Q ss_pred             CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+....  ..++.....+..+               ..++.+||++|.|++++..++.
T Consensus       125 ~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1         125 AHERVV--KREDGEKLAKEYG---------------LPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             TSCCCS--CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHH
T ss_pred             hhcccc--cHHHHHHHHHHcC---------------CEEEEEeCCCCcCHHHHHHHHH
Confidence            765442  3445555555443               2467899999999999887764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.8e-11  Score=93.07  Aligned_cols=108  Identities=14%  Similarity=0.110  Sum_probs=64.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++||+|..........+        ...++.+++++|..+.........    +.....+.   ..+.++|.||+|
T Consensus        55 ~~~~~~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~~~~----~~~~~~~~~~~~~~iilvgnK~D  122 (170)
T d1r2qa_          55 VKFEIWDTAGQERYHSLAPMY--------YRGAQAAIVVYDITNEESFARAKN----WVKELQRQASPNIVIALSGNKAD  122 (170)
T ss_dssp             EEEEEEEECCSGGGGGGHHHH--------HTTCSEEEEEEETTCHHHHHHHHH----HHHHHHHHSCTTCEEEEEEECGG
T ss_pred             EEEEeccCCCchhhhhhHHHH--------hhCcceEEEEeccchhhHHHHHHH----HhhhhhhccCCCceEEeeccccc
Confidence            457899999976543333222        146788999999887654322110    11111111   235688889999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+....  ..+...+..+..+               -..+.+||++|.|++++..++..
T Consensus       123 l~~~~~v--~~e~~~~~~~~~~---------------~~~~e~SAk~g~~V~e~f~~l~~  165 (170)
T d1r2qa_         123 LANKRAV--DFQEAQSYADDNS---------------LLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             GGGGCCS--CHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccc--cHHHHHHHHHhcC---------------CEEEEeeCCCCCCHHHHHHHHHH
Confidence            8765432  3344444444322               13567999999999988777643

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=3.1e-11  Score=96.10  Aligned_cols=108  Identities=15%  Similarity=0.082  Sum_probs=53.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~D  197 (293)
                      ..+-|+||||..........        ....++++|+|+|.+......... .   +...+.   ....+.++|.||.|
T Consensus        55 ~~l~i~D~~G~e~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~-~---~~~~~~~~~~~~~~iilv~~k~D  122 (173)
T d2fu5c1          55 IKLQIWDTAGQERFRTITTA--------YYRGAMGIMLVYDITNEKSFDNIR-N---WIRNIEEHASADVEKMILGNKCD  122 (173)
T ss_dssp             EEEEEEEC---------CCT--------TTTTCSEEEEEEETTCHHHHHHHH-H---HHHHHHHHSCTTCEEEEEEEC--
T ss_pred             EEEEEEECCCchhhHHHHHH--------hccCCCEEEEEEECCChhhHHHHH-H---HHHHhhhhccCCceEEEEEeccc
Confidence            34678999996544332221        124678999999998755322210 0   111111   12346788899999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +......  .........+..+               ..++.+|+++|+|++++..++..
T Consensus       123 ~~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sa~~g~gv~e~f~~l~~  165 (173)
T d2fu5c1         123 VNDKRQV--SKERGEKLALDYG---------------IKFMETSAKANINVENAFFTLAR  165 (173)
T ss_dssp             CCSCCCS--CHHHHHHHHHHHT---------------CEEEECCC---CCHHHHHHHHHH
T ss_pred             chhhccc--HHHHHHHHHHhcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            8765432  2233333333322               23578999999999988877743

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.7e-11  Score=94.53  Aligned_cols=107  Identities=17%  Similarity=0.020  Sum_probs=61.7

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+.++|++|..........        .....|++++|+|..+........ .   +...+.+.   ..|.++|.||+|
T Consensus        52 ~~~~i~d~~g~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~sf~~~~-~---~~~~~~~~~~~~~piilv~nK~D  119 (173)
T d2a5ja1          52 IKLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRETFNHLT-S---WLEDARQHSSSNMVIMLIGNKSD  119 (173)
T ss_dssp             EEEEEECCTTGGGTSCCCHH--------HHTTCSEEEEEEETTCHHHHHTHH-H---HHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEeecccCccchhhHHHH--------HhhccCEEEEEEeecChHHHHhHH-H---HHHHHHHhCCCCCeEEEEecCCc
Confidence            45789999995443222211        124578899999987755432211 0   11111121   345688889999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      +......  ..+......+..+               ...+.+||++|.|++++..++.
T Consensus       120 ~~~~~~~--~~~~~~~~a~~~~---------------~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1         120 LESRRDV--KREEGEAFAREHG---------------LIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             CGGGCCS--CHHHHHHHHHHHT---------------CEEEEECTTTCTTHHHHHHHHH
T ss_pred             hhhhhhh--HHHHHHHHHHHcC---------------CEEEEecCCCCCCHHHHHHHHH
Confidence            7654322  2334444444332               2357799999999998766553

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=7.4e-12  Score=113.11  Aligned_cols=71  Identities=14%  Similarity=0.071  Sum_probs=43.0

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL  198 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~  198 (293)
                      +.++++|+||||+.....-.+..+.   .......|.+++++|.........       +...+.+...+.++|+||+|.
T Consensus       105 ~~~~~~l~DtPG~~~~~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~d~~-------l~~~l~~~~k~~~~V~nK~D~  174 (400)
T d1tq4a_         105 NIPNVVFWDLPGIGSTNFPPDTYLE---KMKFYEYDFFIIISATRFKKNDID-------IAKAISMMKKEFYFVRTKVDS  174 (400)
T ss_dssp             SCTTEEEEECCCGGGSSCCHHHHHH---HTTGGGCSEEEEEESSCCCHHHHH-------HHHHHHHTTCEEEEEECCHHH
T ss_pred             CCCeEEEEeCCCcccccccHHHHHH---HhhhhcceEEEEecCCCCCHHHHH-------HHHHHHHcCCCEEEEEeCccc
Confidence            3467899999997654322222111   112346777888887653222221       344556667899999999996


Q ss_pred             C
Q 022736          199 V  199 (293)
Q Consensus       199 ~  199 (293)
                      .
T Consensus       175 ~  175 (400)
T d1tq4a_         175 D  175 (400)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.6e-11  Score=97.09  Aligned_cols=107  Identities=14%  Similarity=0.086  Sum_probs=63.8

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH---HHHhccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQIAFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~qi~~a~iivlNK~D  197 (293)
                      ..+.++||||......+..        .....++++++|+|..+........ .   +....   .....+.+++.||.|
T Consensus        51 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~-~---~~~~~~~~~~~~~~~i~~~~k~d  118 (166)
T d1g16a_          51 VKLQIWDTAGQERFRTITT--------AYYRGAMGIILVYDITDERTFTNIK-Q---WFKTVNEHANDEAQLLLVGNKSD  118 (166)
T ss_dssp             EEEEEECCTTGGGTSCCCH--------HHHTTEEEEEEEEETTCHHHHHTHH-H---HHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEEECCCchhhHHHHH--------HHHhcCCEEEEEEECCCccCHHHHH-h---hhhhhhccccCcceeeeecchhh
Confidence            4467899999543322211        1124678899999998765432210 0   11111   122345688889999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      +.+...   ..++..+..+..+               .+++.+|+++|+|++++..++.+
T Consensus       119 ~~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_         119 METRVV---TADQGEALAKELG---------------IPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             CTTCCS---CHHHHHHHHHHHT---------------CCEEECBTTTTBSHHHHHHHHHH
T ss_pred             hhhhhh---hHHHHHHHHHhcC---------------CeEEEECCCCCCCHHHHHHHHHH
Confidence            876543   3344444444332               24678999999999998877643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.4e-11  Score=96.12  Aligned_cols=108  Identities=13%  Similarity=0.022  Sum_probs=65.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHHHH---hccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQI---AFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~qi---~~a~iivlNK~  196 (293)
                      ..+.++|++|............        ..++++++++|..+........    .+.. .....   ..|.++|.||+
T Consensus        51 ~~~~~~d~~g~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~sf~~~~----~~~~~~~~~~~~~~~p~ilvgnK~  118 (167)
T d1c1ya_          51 CMLEILDTAGTEQFTAMRDLYM--------KNGQGFALVYSITAQSTFNDLQ----DLREQILRVKDTEDVPMILVGNKC  118 (167)
T ss_dssp             EEEEEEEECSSCSSTTHHHHHH--------HHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSCCCEEEEEECT
T ss_pred             EEeccccccCcccccccccccc--------cccceeEEeeeccchhhhHhHH----HHHHHHHHhcCCCCCeEEEEEEec
Confidence            4577999999776544443222        4578899999998754432210    0111 11211   23568999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+......  ..+......++.. .             ...+.+||++|.|++++-.++.
T Consensus       119 Dl~~~~~~--~~~~~~~~~~~~~-~-------------~~~~e~Sak~g~gv~e~F~~l~  162 (167)
T d1c1ya_         119 DLEDERVV--GKEQGQNLARQWC-N-------------CAFLESSAKSKINVNEIFYDLV  162 (167)
T ss_dssp             TCGGGCCS--CHHHHHHHHHHTT-S-------------CEEEECBTTTTBSHHHHHHHHH
T ss_pred             Cccccccc--chhHHHHHHHHhC-C-------------CEEEEEcCCCCcCHHHHHHHHH
Confidence            98765432  2334444444322 1             2356799999999998877664

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.16  E-value=1.8e-11  Score=96.02  Aligned_cols=113  Identities=17%  Similarity=0.057  Sum_probs=63.2

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH---HHHhccCEEEEeCC
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQIAFADVVILNKV  196 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~qi~~a~iivlNK~  196 (293)
                      ...+.+++++|.........        ......+.+++++|.............   .....   ..-..+.+++.||.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~iv~nk~  116 (169)
T d1upta_          48 NLKFQVWDLGGLTSIRPYWR--------CYYSNTDAVIYVVDSCDRDRIGISKSE---LVAMLEEEELRKAILVVFANKQ  116 (169)
T ss_dssp             TEEEEEEEECCCGGGGGGGG--------GGCTTCSEEEEEEETTCCTTHHHHHHH---HHHHHTCGGGTTCEEEEEEECT
T ss_pred             ceEEEEeeccccccccccch--------hhhhhhhhhhhhhhhhhcchhhhccch---hhhhhhhhccccceEEEEEeec
Confidence            34577888888655433322        223456678888887543222111100   01111   11123568899999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+.+...    ...+...+......-          ....++++||++|+|++++..++.+
T Consensus       117 Dl~~~~~----~~~i~~~~~~~~~~~----------~~~~~~~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_         117 DMEQAMT----SSEMANSLGLPALKD----------RKWQIFKTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             TSTTCCC----HHHHHHHHTGGGCTT----------SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccc----HHHHHHHHHHHHHhc----------CCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            9987642    244444443221110          1135789999999999999988854

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.13  E-value=6.6e-12  Score=106.83  Aligned_cols=124  Identities=19%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ..-|+++|.+|||||||+|.|+    |++++.++...++|........                                
T Consensus        32 ~l~I~LvG~tg~GKSSliN~il----g~~~~~vs~~~~~T~~~~~~~~--------------------------------   75 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSII----GERVVSISPFQSEGPRPVMVSR--------------------------------   75 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH----TSCCSCCCSSSCCCSSCEEEEE--------------------------------
T ss_pred             CcEEEEECCCCCcHHHHHHHHh----CCCceeecCCCCcceeEEEEEE--------------------------------
Confidence            3457789999999999999999    7777766655554211111000                                


Q ss_pred             HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhc-chhhccccccccEEEEEcccc--hHHHHhhhcccCCchHHH-----H
Q 022736          112 EQLVQRKERLDHILLETTGLANPAPLASVLWL-DDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAI-----H  183 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~-~~~~~~~~~~d~vi~vvDa~~--~~~~~~~~~~~~~~~~~~-----~  183 (293)
                           ...+.++.||||||+.++....+.... ..........+.+++|++...  +......      ....+     .
T Consensus        76 -----~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~------~l~~l~~~fg~  144 (257)
T d1h65a_          76 -----SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKL------VAKAITDSFGK  144 (257)
T ss_dssp             -----EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHH------HHHHHHHHHCG
T ss_pred             -----EeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHH------HHHHHHHHcch
Confidence                 023456899999998764322211110 011122346777888877643  2221111      11111     1


Q ss_pred             HHhccCEEEEeCCCCCCCC
Q 022736          184 QIAFADVVILNKVDLVSPE  202 (293)
Q Consensus       184 qi~~a~iivlNK~D~~~~~  202 (293)
                      .+....++|+||+|...++
T Consensus       145 ~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         145 GIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             GGGGGEEEEEECCSCCCGG
T ss_pred             hhhhCEEEEEECcccCCcC
Confidence            2234569999999998654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-11  Score=98.25  Aligned_cols=104  Identities=13%  Similarity=0.030  Sum_probs=60.9

Q ss_pred             CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH---HH-H-hccCEEEEe
Q 022736          120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQ-I-AFADVVILN  194 (293)
Q Consensus       120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~q-i-~~a~iivlN  194 (293)
                      ...+.++||+|......+..        .....++++++|+|.++......       ...++   .+ . ..|.++|.|
T Consensus        51 ~~~l~i~D~~g~~~~~~~~~--------~~~~~~~~~ilv~d~~~~~Sf~~-------~~~~~~~~~~~~~~~piilvgn  115 (170)
T d1i2ma_          51 PIKFNVWDTAGQEKFGGLRD--------GYYIQAQCAIIMFDVTSRVTYKN-------VPNWHRDLVRVCENIPIVLCGN  115 (170)
T ss_dssp             CEEEEEEECTTHHHHSSCGG--------GGTTTCCEEEEEEETTSGGGGTT-------HHHHHHHHHHHHCSCCEEEEEE
T ss_pred             cccccccccccccccceecc--------hhcccccchhhccccccccccch-------hHHHHHHHhhccCCCceeeecc
Confidence            35678999999433221111        12246788999999987532111       12222   11 1 357799999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  257 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~  257 (293)
                      |+|+......    .+.....+..  .             -..+.+||++|.|++++-.++.+
T Consensus       116 K~Dl~~~~~~----~~~~~~~~~~--~-------------~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_         116 KVDIKDRKVK----AKSIVFHRKK--N-------------LQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             CCCCSCSCCT----TTSHHHHSSC--S-------------SEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             hhhhhhhhhh----hHHHHHHHHc--C-------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            9998765432    1111111111  1             23578999999999998877754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.6e-10  Score=90.81  Aligned_cols=110  Identities=14%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+-++||+|..........        .....+++++|+|.++........   ..+....++.  ..+.++|.||+|+
T Consensus        57 ~~l~i~D~~g~e~~~~~~~~--------~~~~a~~~ilv~d~t~~~Sf~~~~---~~~~~~~~~~~~~~~~ilvgnK~Dl  125 (185)
T d2atxa1          57 YLLGLYDTAGQEDYDRLRPL--------SYPMTDVFLICFSVVNPASFQNVK---EEWVPELKEYAPNVPFLLIGTQIDL  125 (185)
T ss_dssp             EEEEEECCCCSSSSTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHH---HTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred             EEeecccccccchhhhhhhh--------cccccceeeeccccchHHHHHHHH---HHHHHHHHhcCCCCCeeEeeecccc
Confidence            45679999997554333222        224578999999998755432211   0122233322  2356888899998


Q ss_pred             CCCCC----------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          199 VSPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       199 ~~~~~----------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      .+...          +....++..+..++++.              -..+.+||++|.|++++-..+
T Consensus       126 ~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~--------------~~~~E~SAk~~~gv~e~F~~l  178 (185)
T d2atxa1         126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGA--------------CCYVECSALTQKGLKTVFDEA  178 (185)
T ss_dssp             TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC--------------SCEEECCTTTCTTHHHHHHHH
T ss_pred             ccchhhhhhhhhcccccccHHHHHHHHHHcCC--------------CEEEEecCCCCcCHHHHHHHH
Confidence            76321          00122233333333321              234678999999998885543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.5e-10  Score=89.45  Aligned_cols=111  Identities=16%  Similarity=0.162  Sum_probs=61.2

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+-|+|++|..........        .....+++++|+|.++.........   .+.....+.  ..|.++|.||+|+
T Consensus        50 ~~l~i~D~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~Sf~~~~~---~~~~~~~~~~~~~piilvgnK~Dl  118 (177)
T d1kmqa_          50 VELALWDTAGLEDYDRLRPL--------SYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL  118 (177)
T ss_dssp             EEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTSCEEEEEECGGG
T ss_pred             eeeeccccCccchhcccchh--------hcccchhhhhhcccchhHHHHHHHH---HHHHHHHHhCCCCceEEeeecccc
Confidence            45779999996543222211        1246788999999987543221100   022222322  2467888899999


Q ss_pred             CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+....          ....++.+...+.++              ....+.+||++|.|++++-+.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~--------------~~~~~E~SAkt~~gi~e~F~~i~  172 (177)
T d1kmqa_         119 RNDEHTRRELAKMKQEPVKPEEGRDMANRIG--------------AFGYMECSAKTKDGVREVFEMAT  172 (177)
T ss_dssp             TTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--------------CSEEEECCTTTCTTHHHHHHHHH
T ss_pred             cchhhHHHHHHHhhcccccHHHHHHHHHHcC--------------CcEEEEecCCCCcCHHHHHHHHH
Confidence            764210          001111111111111              12457799999999998876654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.1e-10  Score=90.76  Aligned_cols=105  Identities=17%  Similarity=0.143  Sum_probs=61.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH---HH-HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQ-IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~q-i~~a~iivlNK~  196 (293)
                      ..+-++||+|........ .+        ...++++++|.|..+.........    +....   .. -..+.++|.||+
T Consensus        50 ~~l~i~D~~g~~~~~~~~-~~--------~~~~~~~ilv~d~~~~~s~~~~~~----~~~~~~~~~~~~~~piilvgnK~  116 (168)
T d2atva1          50 VSMEILDTAGQEDTIQRE-GH--------MRWGEGFVLVYDITDRGSFEEVLP----LKNILDEIKKPKNVTLILVGNKA  116 (168)
T ss_dssp             EEEEEEECCCCCCCHHHH-HH--------HHHCSEEEEEEETTCHHHHHTHHH----HHHHHHHHHTTSCCCEEEEEECG
T ss_pred             eEEEEeecccccccccch-hh--------hcccccceeecccCCccchhhhhh----hcccccccccccCcceeeeccch
Confidence            456799999976543211 11        135788999999987654322110    11111   11 135788999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch-hhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGLL  255 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~-~~~l~~~l  255 (293)
                      |+.+....  ..++.++..+.++               -..+.+||++|++ ++++-..+
T Consensus       117 Dl~~~r~V--~~~e~~~~a~~~~---------------~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1         117 DLDHSRQV--STEEGEKLATELA---------------CAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             GGGGGCCS--CHHHHHHHHHHHT---------------SEEEECCTTTCTTCHHHHHHHH
T ss_pred             hhhhhccC--cHHHHHHHHHHhC---------------CeEEEEccccCCcCHHHHHHHH
Confidence            98654322  3445555555443               1357789999984 87765444

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=4.8e-11  Score=94.69  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=63.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD  197 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D  197 (293)
                      ..+-++|++|..........+        ...++++++|+|..+....... ...  +....++.   ..|.+++.||+|
T Consensus        52 ~~~~i~d~~g~~~~~~~~~~~--------~~~~~~~llv~d~~d~~Sf~~~-~~~--~~~i~~~~~~~~~p~ilvgnK~D  120 (169)
T d1x1ra1          52 AILDVLDTAGQEEFSAMREQY--------MRTGDGFLIVYSVTDKASFEHV-DRF--HQLILRVKDRESFPMILVANKVD  120 (169)
T ss_dssp             EEEEEEECCSCGGGCSSHHHH--------HHHCSEEEEEEETTCHHHHHTH-HHH--HHHHHHHHTSSCCCEEEEEECTT
T ss_pred             ccccccccccccccccchhhh--------hhhccEEEEecccccchhhhcc-chh--hHHHHhhccccCccEEEEecccc
Confidence            346799999965432222211        2467889999999875543221 000  11122222   235688899999


Q ss_pred             CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc-hhhhhhhhh
Q 022736          198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLL  255 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~-~~~~l~~~l  255 (293)
                      +.+....  ..++..+..+..+-               ..+.+||+++. |++++-..+
T Consensus       121 l~~~~~v--~~e~~~~~~~~~~~---------------~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1         121 LMHLRKV--TRDQGKEMATKYNI---------------PYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             CSTTCCS--CHHHHHHHHHHHTC---------------CEEEEBCSSSCBSHHHHHHHH
T ss_pred             hhhhcee--ehhhHHHHHHHcCC---------------EEEEEcCCCCCcCHHHHHHHH
Confidence            8775432  34556666665541               35678999886 888776554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.2e-09  Score=89.33  Aligned_cols=153  Identities=14%  Similarity=0.182  Sum_probs=87.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee--eccc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC--CTVK  104 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic--c~~~  104 (293)
                      ..+.-|++++|++|+||||.+-+|...  ..+++++++..|.-- .+--..+-.          ..+. .|+-+  ....
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R-~gA~eQL~~----------~a~~-l~v~~~~~~~~   73 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR-AAAVEQLQV----------WGQR-NNIPVIAQHTG   73 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC-HHHHHHHHH----------HHHH-TTCCEECCSTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc-ccchhhhhh----------hhhh-cCCcccccccC
Confidence            344568889999999999999999753  568999999988643 211111100          0000 11111  2234


Q ss_pred             hhHHHHHHHHHh--hcCCCCEEEEecCCCCCc-HHHHHhhh-cchhhc--cccccccEEEEEcccchHHHHhhhcccCCc
Q 022736          105 HSLVQALEQLVQ--RKERLDHILLETTGLANP-APLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSY  178 (293)
Q Consensus       105 ~~l~~~l~~l~~--~~~~~d~iiidt~G~~~~-~~~~~~~~-~~~~~~--~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~  178 (293)
                      .++...+.+...  ...++|+|||||+|.... ....+.+. +.....  ......-+++|+|+.........      .
T Consensus        74 ~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~------~  147 (211)
T d2qy9a2          74 ADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ------A  147 (211)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHH------H
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHH------H
Confidence            456666655442  235789999999995432 22222210 001111  01123467899999876655432      1


Q ss_pred             hHHHHHHhccCEEEEeCCCCCC
Q 022736          179 PEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       179 ~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      . ...+.-..+-++++|.|-..
T Consensus       148 ~-~~~~~~~~~~lIlTKlDe~~  168 (211)
T d2qy9a2         148 K-LFHEAVGLTGITLTKLDGTA  168 (211)
T ss_dssp             H-HHHHHSCCCEEEEECCTTCT
T ss_pred             h-hhhhccCCceEEEeecCCCC
Confidence            1 12222357899999999754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.9e-11  Score=94.03  Aligned_cols=108  Identities=15%  Similarity=0.035  Sum_probs=61.9

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV  196 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~  196 (293)
                      ..+.++|++|.........    .   ......+++|+|.|.++........ .   +...+.+    -..|.++|.||+
T Consensus        53 ~~~~~~d~~~~~g~e~~~~----~---~~~~~~~~~ilvfd~t~~~s~~~~~-~---~~~~i~~~~~~~~~piilvgnK~  121 (172)
T d2g3ya1          53 ATIILLDMWENKGENEWLH----D---HCMQVGDAYLIVYSITDRASFEKAS-E---LRIQLRRARQTEDIPIILVGNKS  121 (172)
T ss_dssp             EEEEEECCTTTTHHHHHHH----H---CCCCCCSEEEEEEETTCHHHHHHHH-H---HHHHHHTSGGGTTSCEEEEEECT
T ss_pred             eeeeeeccccccccccccc----c---ccccccceeeeeecccccchhhhhh-h---hhhhhhhccccCCceEEEEeccc
Confidence            4567889887543222211    1   1235678899999987654432210 0   1111111    134678999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      |+.+..+.  ..++.++..+..+               -..+.+||++|.|++++...+.
T Consensus       122 Dl~~~~~v--~~~~~~~~a~~~~---------------~~~~e~Sak~g~~i~~~f~~l~  164 (172)
T d2g3ya1         122 DLVRCREV--SVSEGRACAVVFD---------------CKFIETSAAVQHNVKELFEGIV  164 (172)
T ss_dssp             TCGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHH
T ss_pred             cccccccc--cHHHHHHHHHHcC---------------CeEEEEeCCCCcCHHHHHHHHH
Confidence            98765432  3344444444332               1346789999999998776654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.07  E-value=2.9e-11  Score=95.52  Aligned_cols=94  Identities=17%  Similarity=0.165  Sum_probs=58.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCcccc------chhhhhcCCCCcchhhhhhccCcceeeccc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAMINEGEGGALVEEWVELANGCICCTVK  104 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~------d~~~~~~~~~~~~~~~~~~l~~gcicc~~~  104 (293)
                      .++.|+|++|||||||+++|++.  .+|.+++++.++.+. ...      |.......  +   .....+.++|.||...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~-~~~~~~~~~ds~r~~~~--g---~~~~~~~~~~~~~~~~   75 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG-GEPARPEGVDSVRHERA--G---AVATAVEGDGLLQLHL   75 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--------------------------CSEEEEEETTEEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc-cccchhhccccHHHHhh--c---cccccccChHHHHHHh
Confidence            58899999999999999999885  568999999998775 222      22222221  1   2345566777777643


Q ss_pred             h----hHHHHHHHHHhhcCCCCEEEEecCCCCCc
Q 022736          105 H----SLVQALEQLVQRKERLDHILLETTGLANP  134 (293)
Q Consensus       105 ~----~l~~~l~~l~~~~~~~d~iiidt~G~~~~  134 (293)
                      .    .+...+..+  ....+|++++|..+...+
T Consensus        76 ~~~~~~~~~~~~~~--~~~~~D~iivEg~~~~~~  107 (165)
T d1xjca_          76 RRPLWRLDDVLALY--APLRLDLVLVEGYKQERH  107 (165)
T ss_dssp             CCSCCCHHHHHHHH--GGGCCSEEEEECCTTSCS
T ss_pred             hccccchhhHHHHH--hhcccCeEeeecccccCc
Confidence            3    233333322  235789999999886643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=99.07  E-value=8.3e-10  Score=90.18  Aligned_cols=153  Identities=16%  Similarity=0.141  Sum_probs=85.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~  108 (293)
                      +..+++++|++||||||.+-+|...  ..|++++++..|.-- .+--..+-..+       +.  +.--+.-+....++.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R-~gA~eQL~~~a-------~~--l~i~~~~~~~~~d~~   74 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR-AAGGTQLSEWG-------KR--LSIPVIQGPEGTDPA   74 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS-TTHHHHHHHHH-------HH--HTCCEECCCTTCCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc-ccchhhHhhcc-------cc--cCceEEeccCCccHH
Confidence            4568899999999999999998763  568999999988642 11111110000       00  000111122333455


Q ss_pred             HHHHHHH--hhcCCCCEEEEecCCCCC-cHHHHHhh-hcchhhc--cccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736          109 QALEQLV--QRKERLDHILLETTGLAN-PAPLASVL-WLDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI  182 (293)
Q Consensus       109 ~~l~~l~--~~~~~~d~iiidt~G~~~-~~~~~~~~-~~~~~~~--~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~  182 (293)
                      ..+.+..  ....++|+|||||+|... .....+.+ .......  .....+-+++|+|+..........      . .+
T Consensus        75 ~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~------~-~~  147 (207)
T d1okkd2          75 ALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA------K-KF  147 (207)
T ss_dssp             HHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH------H-HH
T ss_pred             HHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH------H-Hh
Confidence            5544332  123568999999999543 22222211 1111111  112335679999998766554431      1 22


Q ss_pred             HHHhccCEEEEeCCCCCC
Q 022736          183 HQIAFADVVILNKVDLVS  200 (293)
Q Consensus       183 ~qi~~a~iivlNK~D~~~  200 (293)
                      .+.-..+-+++||.|-..
T Consensus       148 ~~~~~~~~lI~TKlDet~  165 (207)
T d1okkd2         148 HEAVGLTGVIVTKLDGTA  165 (207)
T ss_dssp             HHHHCCSEEEEECTTSSC
T ss_pred             hhccCCceEEEeccCCCC
Confidence            333457899999999654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=3.6e-11  Score=94.68  Aligned_cols=99  Identities=17%  Similarity=0.212  Sum_probs=55.3

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCC-cchhhhhhccCcceeeccch--
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGG-ALVEEWVELANGCICCTVKH--  105 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~-~~~~~~~~l~~gcicc~~~~--  105 (293)
                      .+||++|+|++|||||||+++|++.  ..|.+++++.++++. ...+.......... ...+.......+|.||....  
T Consensus         1 m~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T d1np6a_           1 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD-MDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPD   79 (170)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEECSS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc-cccccccCccHHHHHhhhhheeeecCcceEEEeeccc
Confidence            3799999999999999999999975  568999999999875 33332211110000 00012333344444443221  


Q ss_pred             ----hHHHHHHHHHhhcCCCCEEEEecCCCC
Q 022736          106 ----SLVQALEQLVQRKERLDHILLETTGLA  132 (293)
Q Consensus       106 ----~l~~~l~~l~~~~~~~d~iiidt~G~~  132 (293)
                          .....+..+  .....|++++++.+..
T Consensus        80 ~~~~~~~~~~~~~--~~~~~d~~~ve~~~~~  108 (170)
T d1np6a_          80 EEELDLQFLASRM--DTSKLDLILVEGFKHE  108 (170)
T ss_dssp             SCCCCHHHHHHHS--CGGGCSEEEEESCSSC
T ss_pred             ccccchHHHHHHh--cccccCceeEeecccC
Confidence                122222221  1345789999988744

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.8e-10  Score=90.61  Aligned_cols=102  Identities=18%  Similarity=0.159  Sum_probs=58.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL  193 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl  193 (293)
                      ....++|++|.........    ..   ....+|++++|+|..+......       ...++.++       ..+.++|.
T Consensus        51 ~~~~~~~~~~~~~~~~~~~----~~---~~~~~d~~ilv~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~pi~lvg  116 (165)
T d1z06a1          51 IKIQLWDTAGQERFRKSMV----QH---YYRNVHAVVFVYDMTNMASFHS-------LPAWIEECKQHLLANDIPRILVG  116 (165)
T ss_dssp             EEEEEEECCCSHHHHTTTH----HH---HHTTCCEEEEEEETTCHHHHHT-------HHHHHHHHHHHCCCSCCCEEEEE
T ss_pred             eEEEEEeccCchhhccccc----ee---eecCCCceEEEEEeehhhhhhh-------hhhhhHHHHhhccCCCCeEEEEe
Confidence            4567889998543211110    11   1246789999999987654322       11222221       23678999


Q ss_pred             eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc---hhhhhhh
Q 022736          194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT---HVTRLEG  253 (293)
Q Consensus       194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~---~~~~l~~  253 (293)
                      ||+|+.++.+.  ..++.++..+..+               -..+.+||++|.   |++++-.
T Consensus       117 nK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~SAkt~~~~~~V~e~F~  162 (165)
T d1z06a1         117 NKCDLRSAIQV--PTDLAQKFADTHS---------------MPLFETSAKNPNDNDHVEAIFM  162 (165)
T ss_dssp             ECTTCGGGCCS--CHHHHHHHHHHTT---------------CCEEECCSSSGGGGSCHHHHHH
T ss_pred             ccccchhccch--hHHHHHHHHHHCC---------------CEEEEEecccCCcCcCHHHHHH
Confidence            99998765432  4455555555543               135678999866   4544433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=1.8e-09  Score=88.52  Aligned_cols=151  Identities=15%  Similarity=0.114  Sum_probs=84.5

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceee--ccchh
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC--TVKHS  106 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc--~~~~~  106 (293)
                      +.-|++++|++|+||||.+-+|...  ..+++++++..|.-- .+--..+-..          .+ .-|+.+.  ....+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R-~gA~eQL~~~----------a~-~l~i~~~~~~~~~d   77 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-AAAIEQLKIW----------GE-RVGATVISHSEGAD   77 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHHHH----------HH-HHTCEEECCSTTCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc-cchhHHHHHH----------hh-hcCccccccCCCCc
Confidence            4447889999999999999998753  458899999988642 2211111100          00 1122222  22234


Q ss_pred             HHHHHHHHH--hhcCCCCEEEEecCCCCCcH-HHHHhh-hcchhhccc--cccccEEEEEcccchHHHHhhhcccCCchH
Q 022736          107 LVQALEQLV--QRKERLDHILLETTGLANPA-PLASVL-WLDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPE  180 (293)
Q Consensus       107 l~~~l~~l~--~~~~~~d~iiidt~G~~~~~-~~~~~~-~~~~~~~~~--~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~  180 (293)
                      +...+....  ....++|+|||||+|..... .....+ .........  ...+-+++|+|+..........      . 
T Consensus        78 ~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~------~-  150 (213)
T d1vmaa2          78 PAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA------K-  150 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH------H-
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhh------h-
Confidence            444433322  22457899999999955432 222211 111111110  1135589999998765554431      1 


Q ss_pred             HHHHHhccCEEEEeCCCCCC
Q 022736          181 AIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       181 ~~~qi~~a~iivlNK~D~~~  200 (293)
                      ...+.-..+-++++|.|-..
T Consensus       151 ~~~~~~~~~~lI~TKlDe~~  170 (213)
T d1vmaa2         151 IFKEAVNVTGIILTKLDGTA  170 (213)
T ss_dssp             HHHHHSCCCEEEEECGGGCS
T ss_pred             hhccccCCceEEEecccCCC
Confidence            22233357899999999653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=1.4e-09  Score=85.89  Aligned_cols=110  Identities=17%  Similarity=0.091  Sum_probs=65.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH--HHHhccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQIAFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~qi~~a~iivlNK~D~  198 (293)
                      .++.++||+|......+...        .....+.+++|+|..+........ ..  +....  ..-..+.+++.||+|+
T Consensus        52 ~~l~i~d~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~s~~~~~-~~--~~~~~~~~~~~~~~~~v~nk~d~  120 (170)
T d1ek0a_          52 VKFEIWDTAGQERFASLAPM--------YYRNAQAALVVYDVTKPQSFIKAR-HW--VKELHEQASKDIIIALVGNKIDM  120 (170)
T ss_dssp             EEEEEEEECCSGGGGGGHHH--------HHTTCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHSCTTCEEEEEEECGGG
T ss_pred             ccccccccCCchhHHHHHHH--------HHhccceEEEEEeCCcccchhhhh-hh--hhhhccccccccceeeeeccccc
Confidence            45789999997654433322        225678899999998754432211 00  11111  1123467888999998


Q ss_pred             CCCCC-CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPER-SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~~-~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+... +.....+..+..+..+               ...+.+||++|.|++++-..+.
T Consensus       121 ~~~~~~~~v~~~~~~~~~~~~~---------------~~~~e~Sak~g~gV~e~F~~i~  164 (170)
T d1ek0a_         121 LQEGGERKVAREEGEKLAEEKG---------------LLFFETSAKTGENVNDVFLGIG  164 (170)
T ss_dssp             GGSSCCCCSCHHHHHHHHHHHT---------------CEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccchhhhhHHHHHHHHHHcC---------------CEEEEecCCCCcCHHHHHHHHH
Confidence            64321 1123344555555443               1357899999999998876664

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.8e-10  Score=92.36  Aligned_cols=111  Identities=13%  Similarity=0.066  Sum_probs=59.5

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+-++|++|..........        .....+.+++|+|..+.........   .+.....+.  ..+.++|.||+|+
T Consensus        53 ~~~~~~d~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~sf~~i~~---~~~~~~~~~~~~~piilvgnK~Dl  121 (183)
T d1mh1a_          53 VNLGLWDTAGQEDYDRLRPL--------SYPQTDVSLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL  121 (183)
T ss_dssp             EEEEEECCCCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTSCEEEEEECHHH
T ss_pred             eEEEeecccccccchhhhhh--------cccccceeeeeeccchHHHHHHHHH---HHHHHHHHhCCCCcEEEEeecccc
Confidence            34668899986443222211        2246788999999986554322110   012222222  3478889999998


Q ss_pred             CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      ......          .....+.....+..+              .-..+.+||++|.|++++-..+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--------------~~~~~E~SAk~~~~V~e~F~~l~  175 (183)
T d1mh1a_         122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--------------AVKYLECSALTQRGLKTVFDEAI  175 (183)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--------------CSEEEECCTTTCTTHHHHHHHHH
T ss_pred             hhhhhhhhhhhhccccchhhHHHHHHHHHcC--------------CceEEEcCCCCCcCHHHHHHHHH
Confidence            654210          000111111111111              12457799999999998866554

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=1.1e-09  Score=93.28  Aligned_cols=148  Identities=16%  Similarity=0.116  Sum_probs=85.1

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      ..++.-|+|+|-.|||||||+.+|+.. ..-.+.+-+.  -|+ ...|......       +.-+.+...+..|.     
T Consensus         3 ~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~--~~~-~~~D~~~~E~-------~r~~si~~~~~~~~-----   67 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EGA-ATMDFMEQER-------ERGITITAAVTTCF-----   67 (276)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-----------------------------CCCCCCCSEEEEE-----
T ss_pred             hhhceEEEEEeCCCCCHHHHHHHHHHhcCcccccccee--cCc-eEEeccHHHH-------hcCCccccceeeec-----
Confidence            346778999999999999999999853 1111111111  111 1111111111       00112222223221     


Q ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                                +.+..+.|+||||..+...        .......-+|..|+|||+..........     +.....+.+.
T Consensus        68 ----------~~~~~~n~iDtPG~~dF~~--------e~~~~l~~~D~avlVvda~~Gv~~~T~~-----~w~~a~~~~l  124 (276)
T d2bv3a2          68 ----------WKDHRINIIDAPGHVDFTI--------EVERSMRVLDGAIVVFDSSQGVEPQSET-----VWRQAEKYKV  124 (276)
T ss_dssp             ----------ETTEEEEEECCCSSSSCST--------THHHHHHHCCEEEEEEETTTSSCHHHHH-----HHHHHHTTTC
T ss_pred             ----------cCCeEEEEecCCchhhhHH--------HHHHHHHhhhheEEeccccCCcchhHHH-----HHHHHHHcCC
Confidence                      3456789999999877532        2233446789999999998876554321     2334455678


Q ss_pred             cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736          188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN  219 (293)
Q Consensus       188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln  219 (293)
                      |-++++||+|....+     ..++.+.+++..
T Consensus       125 P~i~fINKmDr~~ad-----~~~~l~ei~~~l  151 (276)
T d2bv3a2         125 PRIAFANKMDKTGAD-----LWLVIRTMQERL  151 (276)
T ss_dssp             CEEEEEECTTSTTCC-----HHHHHHHHHHTT
T ss_pred             CEEEEEecccccccc-----cchhHHHHHHHh
Confidence            999999999987754     466666666544

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=99.00  E-value=3.3e-09  Score=86.58  Aligned_cols=148  Identities=19%  Similarity=0.166  Sum_probs=83.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccC-cceeeccchhHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELAN-GCICCTVKHSLV  108 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~-gcicc~~~~~l~  108 (293)
                      ..|++++|++|+||||.+-+|...  ..+++++++..|.-- .+.-..+-..          .+..+ -+.......++.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R-~gA~eQL~~~----------a~~l~v~~~~~~~~~~~~   78 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQLRLL----------GEKVGVPVLEVMDGESPE   78 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC-HHHHHHHHHH----------HHHHTCCEEECCTTCCHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc-chHHHHHHHH----------HHhcCCccccccccchhh
Confidence            467899999999999999999763  458899999988643 2211111000          00000 011111223333


Q ss_pred             HHHHHH--HhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736          109 QALEQL--VQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI  185 (293)
Q Consensus       109 ~~l~~l--~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi  185 (293)
                      ......  .....+.|+|||||+|.... ......+.  . +......+-+++|+|+.......+.       ...+.+.
T Consensus        79 ~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~--~-~~~~~~~~~~llv~~a~~~~~~~~~-------~~~f~~~  148 (207)
T d1ls1a2          79 SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA--R-LKEVLGPDEVLLVLDAMTGQEALSV-------ARAFDEK  148 (207)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH--H-HHHHHCCSEEEEEEEGGGTHHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHHhhccCcceeecccccchhhhhhHHHHH--H-HHhhcCCceEEEEeccccchhHHHH-------HHHHHhh
Confidence            332211  12246789999999995442 22332221  1 2223455678999999876554432       2223333


Q ss_pred             hccCEEEEeCCCCCC
Q 022736          186 AFADVVILNKVDLVS  200 (293)
Q Consensus       186 ~~a~iivlNK~D~~~  200 (293)
                      -..+-++++|.|-..
T Consensus       149 ~~~~~~I~TKlDe~~  163 (207)
T d1ls1a2         149 VGVTGLVLTKLDGDA  163 (207)
T ss_dssp             TCCCEEEEECGGGCS
T ss_pred             CCCCeeEEeecCccc
Confidence            356889999999643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.5e-09  Score=86.38  Aligned_cols=104  Identities=9%  Similarity=0.003  Sum_probs=58.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN  194 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN  194 (293)
                      +.+.|+||+|..... +            ...+|++|+|.|.++........    .+...+.++      ..+.++|.|
T Consensus        52 ~~l~i~Dt~g~~~~~-~------------~~~ad~~ilVfd~~~~~Sf~~~~----~~~~~i~~~~~~~~~~~pi~lV~~  114 (175)
T d2bmja1          52 HLVLIREEAGAPDAK-F------------SGWADAVIFVFSLEDENSFQAVS----RLHGQLSSLRGEGRGGLALALVGT  114 (175)
T ss_dssp             EEEEEEECSSCCCHH-H------------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHCC--CCCCEEEEEEE
T ss_pred             EEEEEeecccccccc-c------------ccccceeEEEeecccchhhhhhH----HHHHHHHHHhhcccCCccEEEEee
Confidence            456789999966432 1            13468899999998754322110    012222221      124678888


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736          195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                      |.|+....++.....+.....++.+.              ...+.+||+++.|++++-..+
T Consensus       115 k~d~d~~~~~~v~~~~~~~~~~~~~~--------------~~~~e~SAk~~~~v~~~F~~l  161 (175)
T d2bmja1         115 QDRISASSPRVVGDARARALCADMKR--------------CSYYETCATYGLNVDRVFQEV  161 (175)
T ss_dssp             CTTCCSSSCCCSCHHHHHHHHHTSTT--------------EEEEEEBTTTTBTHHHHHHHH
T ss_pred             ecCcchhhhcchhHHHHHHHHHHhCC--------------CeEEEeCCCCCcCHHHHHHHH
Confidence            88875443321223344443333221              235778999999998774433

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=5.4e-10  Score=93.99  Aligned_cols=118  Identities=18%  Similarity=0.158  Sum_probs=61.5

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhccc--CCchHHHHHHhcc-CEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHL--SSYPEAIHQIAFA-DVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~--~~~~~~~~qi~~a-~iivlNK  195 (293)
                      .+..+.++||||..+..        .........+|.+++|||+.............  .+.......++.+ .++++||
T Consensus       100 ~~~~i~~iDtPGH~df~--------~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNK  171 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYV--------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINK  171 (245)
T ss_dssp             SSEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEEC
T ss_pred             ccceeeeecccccccch--------hhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEc
Confidence            34678999999976532        22345557789999999998754332110000  0122233444444 4588899


Q ss_pred             CCCCCCCCCcchHHHHHHHHH----hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736          196 VDLVSPERSGDSLDELEKEIH----EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE  252 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~----~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~  252 (293)
                      +|+.+.+.......++.+.++    ++...        .....-.++|+||++|+|+.++.
T Consensus       172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~--------~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         172 MDEPSVQWSEERYKECVDKLSMFLRRVAGY--------NSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             TTSTTCSSCHHHHHHHHHHHHHHHHHHHCC--------CHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHhCc--------CcccCCEEEEeeccCCCCcccch
Confidence            999764421122333333333    32110        00011247899999999997664

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.93  E-value=4.1e-10  Score=95.68  Aligned_cols=127  Identities=15%  Similarity=0.141  Sum_probs=77.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCc----cccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE----IGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~----~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l  107 (293)
                      +.-|+|+|..|+|||||+.+|+... |     .....|..    ...|......       +.-+.+..++.++.     
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~-g-----~~~~~g~v~~g~~~~D~~~~E~-------~r~~ti~~~~~~~~-----   63 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKT-G-----AKERRGRVEEGTTTTDYTPEAK-------LHRTTVRTGVAPLL-----   63 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT-T-----SSSSCCCGGGTCCSSCCSHHHH-------HTTSCCSCEEEEEE-----
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHc-C-----CchhhccchhccccccchHHHH-------HhCCeEEeeccccc-----
Confidence            4568899999999999999998532 1     00112210    0111111100       11223334444332     


Q ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF  187 (293)
Q Consensus       108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~  187 (293)
                                +.+..+.||||||..+...-        ......-+|.+|+|||+..+.......     ......+...
T Consensus        64 ----------~~~~~~n~iDtPGh~dF~~e--------~~~al~~~D~avlvvda~~Gv~~~t~~-----~~~~~~~~~~  120 (267)
T d2dy1a2          64 ----------FRGHRVFLLDAPGYGDFVGE--------IRGALEAADAALVAVSAEAGVQVGTER-----AWTVAERLGL  120 (267)
T ss_dssp             ----------ETTEEEEEEECCCSGGGHHH--------HHHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTC
T ss_pred             ----------ccccceeEEccCchhhhhhh--------hhhhhcccCceEEEeeccCCccchhHH-----HHHhhhhccc
Confidence                      23456889999998875322        234456789999999998765544322     3445566778


Q ss_pred             cCEEEEeCCCCC
Q 022736          188 ADVVILNKVDLV  199 (293)
Q Consensus       188 a~iivlNK~D~~  199 (293)
                      |.++++||+|..
T Consensus       121 p~~i~iNk~D~~  132 (267)
T d2dy1a2         121 PRMVVVTKLDKG  132 (267)
T ss_dssp             CEEEEEECGGGC
T ss_pred             cccccccccccc
Confidence            999999999974

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-09  Score=86.51  Aligned_cols=111  Identities=12%  Similarity=0.093  Sum_probs=61.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      ..+-|+||+|..........        .....+++++|+|..+........ .  .+.....+.  ..+.++|.||+|+
T Consensus        51 ~~l~i~D~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~Sf~~~~-~--~~~~~~~~~~~~~~i~lvgnK~Dl  119 (191)
T d2ngra_          51 YTLGLFDTAGQEDYDRLRPL--------SYPQTDVFLVCFSVVSPSSFENVK-E--KWVPEITHHCPKTPFLLVGTQIDL  119 (191)
T ss_dssp             EEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHH-H--THHHHHHHHCTTCCEEEEEECGGG
T ss_pred             eeeeccccccchhhhhhhhh--------cccccceeecccccchHHHHHHHH-H--HHHHHHhhcCCCCceEEEeccccc
Confidence            45679999997543222211        224688999999998765322110 0  012222221  3467899999998


Q ss_pred             CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                      .+....          .-..++..+..+.++              .-..+.+||++|.|++++.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~SAk~~~~V~e~f~~l~  173 (191)
T d2ngra_         120 RDDPSTIEKLAKNKQKPITPETAEKLARDLK--------------AVKYVECSALTQKGLKNVFDEAI  173 (191)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHTT--------------CSCEEECCTTTCTTHHHHHHHHH
T ss_pred             cccchhhhhhhhcccccccHHHHHHHHHHcC--------------CCeEEEEeCCCCcCHHHHHHHHH
Confidence            753210          001122222222222              12357799999999998865443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=8.2e-10  Score=92.48  Aligned_cols=114  Identities=11%  Similarity=0.136  Sum_probs=64.2

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhc--ccCCchHHHHHHhcc-CEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYR--HLSSYPEAIHQIAFA-DVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~--~~~~~~~~~~qi~~a-~iivlNK  195 (293)
                      .+.++.||||||..+...-        .......+|.+|+||||...........  +-.+.......++.+ .++++||
T Consensus        82 ~~~~i~iiDtPGH~df~~~--------~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNK  153 (239)
T d1f60a3          82 PKYQVTVIDAPGHRDFIKN--------MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK  153 (239)
T ss_dssp             SSEEEEEEECCCCTTHHHH--------HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             CCEEEEEEECCCcHHHHHH--------HHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEEC
Confidence            3467999999998875322        2445678899999999986532111000  000122334555555 4668999


Q ss_pred             CCCCCCCCC--cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736          196 VDLVSPERS--GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR  250 (293)
Q Consensus       196 ~D~~~~~~~--~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~  250 (293)
                      +|+++.++.  .....++...+.......          ..-.++++|+.+|.|+-+
T Consensus       154 mD~~~~d~~~~~~~~~el~~~l~~~~~~~----------~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         154 MDSVKWDESRFQEIVKETSNFIKKVGYNP----------KTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCG----------GGCCEEECCTTTCBTTTB
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCC----------CcEEEEEEEccCCCccee
Confidence            999875531  011223333333332210          112346889999888643

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.90  E-value=2.6e-09  Score=88.46  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=65.8

Q ss_pred             CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhh--cccCCchHHHHHHhc-cCEEEEeC
Q 022736          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY--RHLSSYPEAIHQIAF-ADVVILNK  195 (293)
Q Consensus       119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~--~~~~~~~~~~~qi~~-a~iivlNK  195 (293)
                      .+..+.||||||..+...-.        .....-+|..|+|||+..+.......  ....+.......++. ..++++||
T Consensus        79 ~~~~i~iiDtPGH~df~~~~--------~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK  150 (224)
T d1jnya3          79 KKYFFTIIDAPGHRDFVKNM--------ITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK  150 (224)
T ss_dssp             SSCEEEECCCSSSTTHHHHH--------HHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred             CCceeEEeeCCCcHHHHHHH--------HHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEc
Confidence            35678999999987754333        34556789999999998764322110  000011222333344 36778999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736          196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT  249 (293)
Q Consensus       196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~  249 (293)
                      +|+...+.....++.+...++.+....     .. ......++++||.+|.|+.
T Consensus       151 ~D~~~~~~~~~~~~~v~~~i~~~~~~~-----~~-~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         151 MDLTEPPYDEKRYKEIVDQVSKFMRSY-----GF-NTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             GGGSSSTTCHHHHHHHHHHHHHHHHHT-----TC-CCTTCEEEECBTTTTBTTT
T ss_pred             ccCCCccccHHHHHHHHHHHHhHHHhc-----CC-CcccCeEEEEEccCCCCcc
Confidence            999865432233444444444432110     00 0112345789999998864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=2.2e-09  Score=85.66  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=60.0

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL  198 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~  198 (293)
                      +.+-++|++|.........        ......+++++|.|..+..+......   .+.....+.  ..+.++|.||+|+
T Consensus        50 ~~~~i~D~~g~~~~~~~~~--------~~~~~~~~~ilv~d~~~~~Sf~~~~~---~~~~~~~~~~~~~~iilVgnK~Dl  118 (179)
T d1m7ba_          50 IELSLWDTSGSPYYDNVRP--------LSYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL  118 (179)
T ss_dssp             EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCEEEEEEECGGG
T ss_pred             Eeecccccccccccccccc--------chhhhhhhhheeeecccCCCHHHHHH---HHHHHHhccCCcceEEEEEecccc
Confidence            4467999999543222211        12256789999999987654221100   011222221  3467889999998


Q ss_pred             CCCCC----------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch-hhhhhhhh
Q 022736          199 VSPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGLL  255 (293)
Q Consensus       199 ~~~~~----------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~-~~~l~~~l  255 (293)
                      .....          +.-..++.....++.+.              ...+.+||++|.+ ++++-+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~--------------~~y~E~SAk~~~n~i~~~F~~~  172 (179)
T d1m7ba_         119 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGA--------------ATYIECSALQSENSVRDIFHVA  172 (179)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC--------------SEEEECBTTTBHHHHHHHHHHH
T ss_pred             cccchhhHHHhhhhcCcchHHHHHHHHHHhCC--------------CeEEEEeCCCCCcCHHHHHHHH
Confidence            64310          00112333333333332              2456799999984 88776654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.65  E-value=3.1e-08  Score=84.52  Aligned_cols=101  Identities=23%  Similarity=0.211  Sum_probs=59.8

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++|+|+||||||||+|+|...    ++. +.+.|.+|+....-.+                      ...+.=.+.+..+
T Consensus         5 ~GivG~Pn~GKSTlf~~lt~~----~~~-~~~ypf~ti~pn~gvv----------------------~v~d~r~~~l~~~   57 (278)
T d1jala1           5 CGIVGLPNVGKSTLFNALTKA----GIE-AANYPFCTIEPNTGVV----------------------PMPDPRLDALAEI   57 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHT----C-------CCCCCCCCSSEE----------------------ECCCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHCC----CCc-cccCCCCCCCCceEEE----------------------ecccHhHHHHHHh
Confidence            789999999999999999953    333 3343333221111000                      1112223334444


Q ss_pred             HhhcC--CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          115 VQRKE--RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       115 ~~~~~--~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      .....  ...+-++|.||+...+.....+. ...+.+..++|.+++|||+.
T Consensus        58 ~~~~~~~~a~i~~~Di~GLi~ga~~g~Glg-~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          58 VKPERILPTTMEFVDIAGLVAGASKGEGLG-NKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HCCSEEECCEEEEEECCSCCTTHHHHGGGT-CCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCceeeeeEEEEEccccCCCcccCCCcc-HHHHHHHHhccceEEEeecc
Confidence            32111  23456899999988776665544 45678889999999999873

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=6.4e-09  Score=91.13  Aligned_cols=67  Identities=18%  Similarity=0.118  Sum_probs=45.4

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS  200 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~  200 (293)
                      +-+-||||||..+...-.        .....-+|++++|||+..+.......     +.....+.+.+-++++||+|...
T Consensus        96 ~~inliDtPGh~dF~~ev--------~~al~~~D~allVVda~eGv~~qT~~-----~~~~a~~~~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEV--------TAALRVTDGALVVVDTIEGVCVQTET-----VLRQALGERIKPVVVINKVDRAL  162 (341)
T ss_dssp             EEEEEECCCCCCSSCHHH--------HHHHHTCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCEEEEEEECHHHHH
T ss_pred             eEEEEEcCCCcHHHHHHH--------HHHHhhcCceEEEEecccCcchhHHH-----HHHHHHHcCCCeEEEEECccccc
Confidence            346789999987753222        23335679999999998765544321     23344555678999999999653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=1.7e-08  Score=85.91  Aligned_cols=35  Identities=34%  Similarity=0.335  Sum_probs=23.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE   71 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~   71 (293)
                      --++|+|.||+|||||+|+|.    +++.+.+.+.||.|
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~----~~~~~~~~~~pG~T  147 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLA----KKNIAKTGDRPGIT  147 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH----TSCCC---------
T ss_pred             eEEEEEecCccchhhhhhhhh----ccceEEECCccccc
Confidence            347889999999999999999    78888999999974

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.54  E-value=3.1e-08  Score=86.06  Aligned_cols=42  Identities=21%  Similarity=0.214  Sum_probs=23.1

Q ss_pred             CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736          121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK  163 (293)
Q Consensus       121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~  163 (293)
                      ..+.++|+||+........ .+....+....++|.+++|||+.
T Consensus        71 ~~i~~~D~pGli~ga~~g~-~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          71 IPVKMVDVAGLVPGAHEGR-GLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             EEEEEEECC----------------CCCSSTTCSEEEEEEETT
T ss_pred             ccEEEEECCCcccchhccc-chHHHHHHhhccceEEEEEeccc
Confidence            3578999999876544433 23355577778999999999985

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.44  E-value=1.4e-08  Score=87.62  Aligned_cols=103  Identities=22%  Similarity=0.153  Sum_probs=58.2

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++|+|.||||||||+|+|+...    ++.+.+.|.+|+....                    |-+.|  .+.-...+..+
T Consensus        13 iGivG~Pn~GKSTlfnalT~~~----~~~~anypftTi~pn~--------------------g~v~v--~d~r~~~l~~~   66 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKSV----LGNPANYPYATIDPEE--------------------AKVAV--PDERFDWLCEA   66 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHST----TTSTTCCSSCCCCTTE--------------------EEEEE--CCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHCCC----CCCcCCCCccCccCCe--------------------EEEec--cccchhhhhhc
Confidence            8899999999999999999542    2223455655332111                    11111  11111222222


Q ss_pred             Hhhc--CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc
Q 022736          115 VQRK--ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN  164 (293)
Q Consensus       115 ~~~~--~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~  164 (293)
                      ....  -...+.++|.||+.....-...+ ....+.+..++|.+++|||+..
T Consensus        67 ~~~~~~~~~~i~~~DvaGLv~gA~~g~GL-Gn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          67 YKPKSRVPAFLTVFDIAGLTKGASTGVGL-GNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             HCCSEEECEEEEEECTGGGCCCCCSSSSS-CHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccCCceecccceeeecccccccccccccc-HHHHHHHhhccceeEEEEeccC
Confidence            2211  12356789999976543332211 1344667789999999998854

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=5.7e-08  Score=83.43  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=23.3

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...|-++|+|--+||||||+|+|++.
T Consensus        24 ~~~P~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          24 LDLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhCC
Confidence            36888999999999999999999953

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.41  E-value=4.9e-08  Score=80.35  Aligned_cols=111  Identities=17%  Similarity=0.183  Sum_probs=61.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~  113 (293)
                      =++++|..|||||||++++....           +-.|.|++...+.                                 
T Consensus         8 KilllG~~~vGKTsll~~~~~~~-----------~~pTiG~~~~~~~---------------------------------   43 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILH-----------VVLTSGIFETKFQ---------------------------------   43 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-----------CCCCCSCEEEEEE---------------------------------
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-----------cCCCCCeEEEEEE---------------------------------
Confidence            36889999999999999996421           1111222211111                                 


Q ss_pred             HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH---HHH----H--
Q 022736          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE---AIH----Q--  184 (293)
Q Consensus       114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~---~~~----q--  184 (293)
                          .++..+.++|+.|..........+        ...++.+++++|.+................+   .+.    +  
T Consensus        44 ----~~~~~~~~~D~~Gq~~~r~~w~~~--------~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~  111 (221)
T d1azta2          44 ----VDKVNFHMFDVGGQRDERRKWIQC--------FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW  111 (221)
T ss_dssp             ----ETTEEEEEEECCCSTTTTTGGGGG--------CTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGG
T ss_pred             ----ECcEEEEEEecCccceeccchhhh--------cccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChh
Confidence                123457899999976544333222        2467789999998754321111000000011   111    1  


Q ss_pred             -HhccCEEEEeCCCCCC
Q 022736          185 -IAFADVVILNKVDLVS  200 (293)
Q Consensus       185 -i~~a~iivlNK~D~~~  200 (293)
                       -..+.+|++||+|+..
T Consensus       112 ~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2         112 LRTISVILFLNKQDLLA  128 (221)
T ss_dssp             GSSCEEEEEEECHHHHH
T ss_pred             hCCCcEEEEechhhhhh
Confidence             1246799999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=4.4e-08  Score=78.64  Aligned_cols=19  Identities=26%  Similarity=0.363  Sum_probs=17.3

Q ss_pred             EEEEecCCCcHHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll   53 (293)
                      ++++|.+|||||||++++.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5789999999999999993

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=3.2e-07  Score=73.16  Aligned_cols=77  Identities=13%  Similarity=0.097  Sum_probs=48.0

Q ss_pred             EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l  114 (293)
                      ++++|..|+|||||++++......       ..+  |++++...+.                                  
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~~-------~~p--TiG~~~~~~~----------------------------------   41 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHGS-------GVP--TTGIIEYPFD----------------------------------   41 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTSS-------CCC--CCSCEEEEEE----------------------------------
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCC-------CCc--eeeEEEEEEe----------------------------------
Confidence            567999999999999999764211       011  1333221111                                  


Q ss_pred             HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch
Q 022736          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL  165 (293)
Q Consensus       115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~  165 (293)
                         .....+-++|++|............        ..++.+++++|....
T Consensus        42 ---~~~~~~~~~d~~g~~~~~~~~~~~~--------~~~~~~i~~~~~~~~   81 (200)
T d2bcjq2          42 ---LQSVIFRMVDVGGQRSERRKWIHCF--------ENVTSIMFLVALSEY   81 (200)
T ss_dssp             ---CSSCEEEEEECCCSTTGGGGGGGGC--------SSCSEEEEEEEGGGG
T ss_pred             ---ccceeeeeccccccccccccccccc--------cccceeeEeeeccch
Confidence               1234577999999766544443222        456778999998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=2.1e-06  Score=67.92  Aligned_cols=20  Identities=30%  Similarity=0.328  Sum_probs=18.1

Q ss_pred             EEEEecCCCcHHHHHHHHHc
Q 022736           35 TVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++|..|+|||||++++..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            56799999999999999975

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.25  E-value=3.2e-07  Score=78.92  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=23.8

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ....|-++|+|..+||||||+|+|++.
T Consensus        21 ~~~lP~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          21 PLDLPQIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHhCC
Confidence            345788999999999999999999964

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=3.7e-07  Score=74.81  Aligned_cols=35  Identities=29%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~   68 (293)
                      .+.+++|.+|+|||||+|+|+... ..++.-++...
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~-~~~T~~vs~~~  130 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKL  130 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC-CCC--------
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh-hhhccCccccc
Confidence            467899999999999999998532 23344444333

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.94  E-value=1.1e-06  Score=72.08  Aligned_cols=23  Identities=43%  Similarity=0.524  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...+++|.+|+|||||+|+|+..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            46679999999999999999853

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.86  E-value=9.9e-05  Score=59.73  Aligned_cols=148  Identities=16%  Similarity=0.224  Sum_probs=76.1

Q ss_pred             eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcC---------CCCcchhhhhhc-cCcce
Q 022736           33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG---------EGGALVEEWVEL-ANGCI   99 (293)
Q Consensus        33 pvi~i-~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~---------~~~~~~~~~~~l-~~gci   99 (293)
                      .+|.| .|..|+||||+.-.|...  ..|+++.++-.|+.. -.+...+-.+.         ......++.+.. .+|.-
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM-ANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVK   80 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS-SSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHhCCCcCcchhhhhhccccccccccccCCccce
Confidence            34444 599999999999988663  458999999988653 11111000000         001111222222 23322


Q ss_pred             eecc-----------chhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH
Q 022736          100 CCTV-----------KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ  168 (293)
Q Consensus       100 cc~~-----------~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~  168 (293)
                      +...           ...+...+..+   ...+|+||+|+|+...+....          .....|.++.++.+....-.
T Consensus        81 ~l~~~~~~~~~~~~~~~~l~~~l~~l---~~~~D~viiD~~~~~~~~~~~----------~l~~ad~v~~v~~~~~~~~~  147 (232)
T d1hyqa_          81 VVPAGVSLEGLRKANPEKLEDVLTQI---MESTDILLLDAPAGLERSAVI----------AIAAAQELLLVVNPEISSIT  147 (232)
T ss_dssp             EEECCSCHHHHHHHCHHHHHHHHHHH---HHTCSEEEEECCSSSSHHHHH----------HHHHSSEEEEEECSSHHHHH
T ss_pred             eEeeecccccccccchhhHHHHHHHH---hhccceeeecccccccchhHH----------Hhhhhheeeeeccccccchh
Confidence            2211           11222333332   246999999999966543222          12347788888887643211


Q ss_pred             HhhhcccCCchHHHHHHhcc-CEEEEeCCCCC
Q 022736          169 IDKYRHLSSYPEAIHQIAFA-DVVILNKVDLV  199 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~~  199 (293)
                      ...     .......+.+.. .-+|+||.+..
T Consensus       148 ~~~-----~~~~~~~~~~~~~~~iv~N~~~~~  174 (232)
T d1hyqa_         148 DGL-----KTKIVAERLGTKVLGVVVNRITTL  174 (232)
T ss_dssp             HHH-----HHHHHHHHHTCEEEEEEEEEECTT
T ss_pred             hhh-----hhhhhhhhcccccccccccccccc
Confidence            110     012333444443 34789998643

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.73  E-value=6.6e-06  Score=67.85  Aligned_cols=44  Identities=25%  Similarity=0.424  Sum_probs=37.8

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++|++++|++...+....+-     +++|+|++|||||||++.+..
T Consensus         6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3           6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence            48999999999988877755443     599999999999999999986

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=6e-06  Score=67.85  Aligned_cols=43  Identities=28%  Similarity=0.470  Sum_probs=36.6

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++|++++|++...+.+..+-     +++++|++|||||||++.+..
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence            5789999999998877754433     699999999999999999975

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.73  E-value=0.00014  Score=58.85  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=29.0

Q ss_pred             eEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i~-G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .+|.|+ +..|+||||+.-.|...  ..|++++++-.|+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~   42 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT   42 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            356555 88999999999888653  46889999998753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.72  E-value=6.6e-06  Score=68.09  Aligned_cols=47  Identities=17%  Similarity=0.294  Sum_probs=40.2

Q ss_pred             CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++++.+++++|+....+.+..+-     +++++|+.|||||||++.|..-
T Consensus         4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_           4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999998877765444     5999999999999999999853

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.71  E-value=7.7e-06  Score=67.52  Aligned_cols=44  Identities=23%  Similarity=0.364  Sum_probs=38.1

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+++.|++++|++...+.+..+-     +++++|+.|||||||++.|..
T Consensus         3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912           3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence            58999999999998877765444     699999999999999999985

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=6.9e-06  Score=67.86  Aligned_cols=45  Identities=22%  Similarity=0.241  Sum_probs=39.3

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++.+.|++++|+.++.+....+-     +++|+|+.|||||||++.|..-
T Consensus         2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_           2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            47789999999999999876555     6999999999999999999853

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.67  E-value=7.8e-06  Score=68.23  Aligned_cols=45  Identities=38%  Similarity=0.474  Sum_probs=38.2

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++++|++++|+..+.+.+..+-     +++++|+.|||||||++.|..-
T Consensus         4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_           4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCC
Confidence            58999999999988777754433     6999999999999999999853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.64  E-value=1.1e-05  Score=66.82  Aligned_cols=44  Identities=20%  Similarity=0.344  Sum_probs=34.9

Q ss_pred             eEEEccccccccCc-ccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNS-HENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~-~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++|++++|++. +.+.+..+-     +++|+|+.|||||||++.|++
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999664 344543332     599999999999999999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.3e-05  Score=66.63  Aligned_cols=45  Identities=24%  Similarity=0.365  Sum_probs=35.9

Q ss_pred             eEEEccccccccCcc---cCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSH---ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~---~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++++|++++|++++   .+.+..+-     +++|+|+.|||||||++.|++-
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence            599999999997654   34443332     5999999999999999999863

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.59  E-value=1.5e-05  Score=60.30  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+|+++|+|||||||+.++|++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47889999999999999999865

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.56  E-value=0.00065  Score=56.24  Aligned_cols=38  Identities=32%  Similarity=0.310  Sum_probs=32.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      ..|+|+|--|+||||+.-.|...  ..|++|.++-.|++.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~   41 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            46778999999999999887653  569999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=1.6e-05  Score=65.68  Aligned_cols=44  Identities=25%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             EEEccccccccC--cccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        12 ~~~~~~~~~~~~--~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++++|++++|..  ++.+.+..+-     .++|+|+.|||||||++.|++-
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            678999999954  2344443333     4999999999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.51  E-value=2e-05  Score=63.27  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=35.2

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++.+++++|.+ +.+.+...-     +++|+|+.|||||||++.|..-
T Consensus         2 ~lev~~ls~~y~~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_           2 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEEeCC-eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc
Confidence            4788999999954 666654433     4899999999999999999863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.50  E-value=2.4e-05  Score=65.15  Aligned_cols=45  Identities=18%  Similarity=0.324  Sum_probs=35.7

Q ss_pred             eEEEccccccccCcc--cCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736           11 AVRIDETTHEFSNSH--ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~--~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++++|++++|++++  .+....+-     +++|+|++|||||||++.|+.-
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc
Confidence            589999999997654  44443332     5999999999999999999863

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.48  E-value=2e-05  Score=65.77  Aligned_cols=43  Identities=26%  Similarity=0.332  Sum_probs=37.4

Q ss_pred             EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++.|++++|+..+.+....+-     +++|+|+.|||||||++.|..
T Consensus         3 Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_           3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            7899999999988877765544     599999999999999999985

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.45  E-value=2.2e-05  Score=60.44  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .|.|+|+|+|||||||+.+.|.+.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.43  E-value=2.8e-05  Score=64.75  Aligned_cols=50  Identities=26%  Similarity=0.502  Sum_probs=38.3

Q ss_pred             CCCCc-----eEEEccccccccCcc--cCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736            6 EDPPL-----AVRIDETTHEFSNSH--ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus         6 ~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -++|+     .++++|++++|+++.  .+.+..+-     .++|+|+.|||||||++.|++-
T Consensus         6 ~~~pl~~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1           6 GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             TCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCCCCCCCCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc
Confidence            45565     499999999997643  44543333     5999999999999999999863

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.42  E-value=2.5e-05  Score=63.90  Aligned_cols=43  Identities=28%  Similarity=0.459  Sum_probs=34.4

Q ss_pred             eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +++++|++++|++ ..+.+..+-     +++++|+.|||||||++.|..
T Consensus         1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2           1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhc
Confidence            4788999999987 345443333     599999999999999999985

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.42  E-value=4.3e-05  Score=60.42  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=23.7

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +.++++|+|+|+|||||||+.+.|.+.
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=3.7e-05  Score=60.04  Aligned_cols=28  Identities=39%  Similarity=0.440  Sum_probs=23.6

Q ss_pred             CCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           28 DDVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        28 ~~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...+..+|+++|+|||||||+.++++..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456678999999999999999999753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=3e-05  Score=60.02  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=28.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .|+|+|++|+|||||++++++.  ..+.+++++...+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~   40 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV   40 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            4789999999999999999875  35667777665543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.41  E-value=4e-05  Score=58.75  Aligned_cols=25  Identities=32%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      .++|+|+|++||||||+.++|.+..
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            3689999999999999999998753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.37  E-value=2.2e-05  Score=64.72  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=34.3

Q ss_pred             eEEEcccccccc--CcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFS--NSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~--~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .++++|++++|.  +...+.+..+     -+++|+|++|||||||++.|..
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence            588999999994  3344444332     2699999999999999999986

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=5.8e-05  Score=59.78  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=24.2

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -.+.|+|+|+|+|||||||+...|.+.
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.36  E-value=3.4e-05  Score=63.13  Aligned_cols=44  Identities=25%  Similarity=0.395  Sum_probs=32.7

Q ss_pred             eEEEccccccccCcc----cCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSH----ENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~----~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++.|++++|+..+    .+.+..+     -+++|+|++|||||||++.+..
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccC
Confidence            368899999887643    2332222     2699999999999999998874

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.35  E-value=4.6e-05  Score=58.67  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=22.7

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      +..+|+|+|++||||||+.+.|.+..
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999998753

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=4.5e-05  Score=60.75  Aligned_cols=34  Identities=15%  Similarity=0.114  Sum_probs=26.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d   67 (293)
                      +|+++|.|||||||+.++|.+.  ..+.++.++..|
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D   39 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   39 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence            4778999999999999999864  245666666544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=4.1e-05  Score=62.98  Aligned_cols=44  Identities=27%  Similarity=0.421  Sum_probs=33.3

Q ss_pred             eEEEccccccccCcc----cCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736           11 AVRIDETTHEFSNSH----ENDDVSV-----GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~----~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++++.|++++|....    .+.+..+     -+++|+|++|||||||++.|..
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            468899999997652    2332222     3699999999999999999985

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.26  E-value=6.4e-05  Score=58.17  Aligned_cols=26  Identities=31%  Similarity=0.193  Sum_probs=22.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      ....|+|+|++|||||||+++|.+..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.25  E-value=9e-05  Score=57.40  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=25.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~   65 (293)
                      .+|+|+|++||||||+++.|.+.  ..+.++.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   36 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS   36 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEe
Confidence            48999999999999999999764  3344544443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.23  E-value=6.6e-05  Score=58.12  Aligned_cols=21  Identities=48%  Similarity=0.662  Sum_probs=19.2

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++|+|++|+|||||++.+++.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhc
Confidence            688999999999999999864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.23  E-value=0.00014  Score=56.61  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=26.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~   65 (293)
                      +.+++|.|.+||||||+++.|.+.  ..+.++..+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~   36 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            468999999999999999999764  3455555544

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=8.9e-05  Score=56.88  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ....+++|+|++||||||+.+.|.+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45688999999999999999999864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.13  E-value=4.9e-05  Score=64.12  Aligned_cols=38  Identities=24%  Similarity=0.264  Sum_probs=27.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d   67 (293)
                      .+.|||+|+|.+||||||+.++|.+.  ..+.+++++..|
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            46789999999999999999998653  235677888766

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.11  E-value=0.00082  Score=59.31  Aligned_cols=109  Identities=14%  Similarity=0.258  Sum_probs=63.7

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec----c
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT----V  103 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~----~  103 (293)
                      .+.++++|+|+.||||||++..+++.  ..++++..+...+.  ..++                     |+.++.    .
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE--~~~~---------------------~~~q~~v~~~~  212 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE--FDID---------------------GIGQTQVNPRV  212 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC--SCCS---------------------SSEEEECBGGG
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcc--cccC---------------------CCCeeeecCCc
Confidence            45689999999999999999999985  33456555553332  1111                     112211    1


Q ss_pred             chhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh
Q 022736          104 KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK  171 (293)
Q Consensus       104 ~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~  171 (293)
                      ...+...++..++  .+||+|+|.=  +-++......+  +.+.    .=..|++-+.+.+....+..
T Consensus       213 ~~~~~~~l~~~lR--~dPDvi~igE--iRd~~ta~~a~--~aa~----tGhlV~tTlHa~~a~~~~~R  270 (401)
T d1p9ra_         213 DMTFARGLRAILR--QDPDVVMVGE--IRDLETAQIAV--QASL----TGHLVMSTLHTNTAVGAVTR  270 (401)
T ss_dssp             TBCHHHHHHHHGG--GCCSEEEESC--CCSHHHHHHHH--HHHH----TTCEEEEEECCSSSHHHHHH
T ss_pred             CCCHHHHHHHHHh--hcCCEEEecC--cCChHHHHHHH--HHHh----cCCeEEEEeccCchHhhhhh
Confidence            2357778887775  5799999742  33333322221  1111    11347777877766555443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.11  E-value=0.0002  Score=55.97  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~   65 (293)
                      -+|+|+|.+|||||||.++|.+.  ..+..+.++.
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~   57 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccccccceecc
Confidence            36779999999999999999763  3344555554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00013  Score=59.65  Aligned_cols=46  Identities=20%  Similarity=0.295  Sum_probs=34.3

Q ss_pred             CceEEEccccccccCcccCCCC-ceeEEEEEecCCCcHHHHHHHHHc
Q 022736            9 PLAVRIDETTHEFSNSHENDDV-SVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~-~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++.+++.++++++.-++.+.+. +=-+++|+|+.|||||||++.|..
T Consensus         1 s~il~~~dv~~~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_           1 SIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             CEEEEEEEECCTTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CeEEEEECcccCceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3678888887776544444433 233689999999999999999985

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.09  E-value=0.00024  Score=54.51  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.09  E-value=0.00012  Score=56.20  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=20.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      --+|.|+|++||||||+.+.|.+.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346779999999999999999753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00015  Score=56.78  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHG   58 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~   58 (293)
                      +|+|+|++||||||+++.|.+..++
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            6889999999999999999876433

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.01  E-value=0.00019  Score=55.03  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      -.|+|+|++||||||+.+.|.+..
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHh
Confidence            358889999999999999998653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.01  E-value=0.00014  Score=59.71  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -+++++|+.|||||||++.|..-
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCChHHHHHHHHHcC
Confidence            47889999999999999999863

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.96  E-value=0.00016  Score=57.13  Aligned_cols=26  Identities=23%  Similarity=0.311  Sum_probs=23.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++.++|+|.|+|||||||..+.|.+.
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0002  Score=56.34  Aligned_cols=24  Identities=33%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +|+|+|.|+|||||||..+.|.+.
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.95  E-value=0.00036  Score=59.86  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=27.5

Q ss_pred             EEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcC
Q 022736           35 TVITGFLGAGKSTLVNYILNG-KHGKRIAVILNE   67 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d   67 (293)
                      ++|+|..|||||||+|+|+.. ....++..+...
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~  202 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT  202 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred             EEEEeeccccchHHHHHHhhhcccccceeeccch
Confidence            788999999999999999986 556777777644

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00021  Score=53.83  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .|+|+|++||||||+.+.|.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3677899999999999999864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00036  Score=58.53  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..++-||.|+|+.++|||||+|.|+..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            346888999999999999999999953

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00018  Score=56.24  Aligned_cols=25  Identities=28%  Similarity=0.266  Sum_probs=20.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +--+|.++|+|||||||+.+.|.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3446779999999999999999753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00028  Score=56.40  Aligned_cols=24  Identities=38%  Similarity=0.459  Sum_probs=22.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .|||+|.|+|||||||....|.+.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            589999999999999999999864

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.81  E-value=0.0076  Score=50.05  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=30.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      ..|+|.|--|+||||+.-.|...  ..|++|.+|-.|++.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~   42 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            35667999999999988777542  459999999999864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.76  E-value=0.00024  Score=54.52  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      |-|+++|++||||||+.+.|.+.
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            56788899999999999999753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00036  Score=54.49  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHccC
Q 022736           34 VTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      .++|+||+|||||||+++|++..
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC
Confidence            47779999999999999999753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00043  Score=55.35  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=21.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHccCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNGKHG   58 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~~~   58 (293)
                      +++|+||+|||||||++.|++..+.
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~p~   28 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQPL   28 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCc
Confidence            6889999999999999999986543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.00056  Score=55.38  Aligned_cols=83  Identities=22%  Similarity=0.325  Sum_probs=52.9

Q ss_pred             cccccEEEEEcccchH---HHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEe
Q 022736          151 VRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS  227 (293)
Q Consensus       151 ~~~d~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~  227 (293)
                      ..+|.++.|+.+....   ..++.      +..+....+.+-+||+||+|+++++    ....+......+...      
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR------~Lv~a~~~~i~pvIvlnK~DL~~~~----~~~~~~~~~~~~~~~------   72 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDK------FLVLAEKNELETVMVINKMDLYDED----DLRKVRELEEIYSGL------   72 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHH------HHHHHHHTTCEEEEEECCGGGCCHH----HHHHHHHHHHHHTTT------
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHH------HHHHHHHcCCCEEEEEeCcccCCHH----HHHHHHHhhcccccc------
Confidence            5678888888654321   11221      3444455566789999999999754    345555555544332      


Q ss_pred             ecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          228 VRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       228 ~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                             -+++.+|++++.+++.|..++.
T Consensus        73 -------~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          73 -------YPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             -------SCEEECCTTTCTTHHHHHHHHS
T ss_pred             -------eeEEEeccccchhHhhHHHHhc
Confidence                   2456788888888888887775

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00089  Score=56.85  Aligned_cols=38  Identities=21%  Similarity=0.250  Sum_probs=29.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcC
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNE   67 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d   67 (293)
                      ++.-+|+|+|.+|||||||.+.|...    ..+.++.+++.|
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            34557889999999999999888652    346788888755

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00041  Score=55.37  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=26.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccC-------CCCeEEEEEcC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGK-------HGKRIAVILNE   67 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~-------~~~~vavv~~d   67 (293)
                      -+|+|+|.+|||||||.+.|.+..       .+.++.++..|
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D   44 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD   44 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecc
Confidence            357799999999999999997641       23456777654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.64  E-value=0.00039  Score=54.49  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..|+|.|++||||||+.+.|.+.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34778999999999999998753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00044  Score=54.22  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.7

Q ss_pred             EEEEecCCCcHHHHHHHHHccC
Q 022736           35 TVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~~   56 (293)
                      |+|+|++|||||||+++|++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5789999999999999998763

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.61  E-value=0.00031  Score=56.34  Aligned_cols=32  Identities=25%  Similarity=0.196  Sum_probs=25.6

Q ss_pred             CcccCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736           23 NSHENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        23 ~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+.+....+.-+|.++|.|||||||+.+.|.+
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34444455667899999999999999999975

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.52  E-value=0.00078  Score=52.85  Aligned_cols=28  Identities=29%  Similarity=0.339  Sum_probs=23.3

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccC
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      .++.-+|+|.|..||||||+++.|.+..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3444589999999999999999998753

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.49  E-value=0.00062  Score=52.63  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      |+|.|+|||||||..+.|.+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.46  E-value=0.00079  Score=56.15  Aligned_cols=81  Identities=11%  Similarity=0.169  Sum_probs=49.0

Q ss_pred             cccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEee
Q 022736          149 SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV  228 (293)
Q Consensus       149 ~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~  228 (293)
                      ....+|.|+.|+||..........     +..+++  ..+.++|+||+|+++.+    ....+.+..+..+         
T Consensus        12 ~i~~~DvIl~V~DaR~P~ss~~~~-----l~~~~~--~Kp~IlVlNK~DLv~~~----~~~~w~~~f~~~~---------   71 (273)
T d1puja_          12 KLKLIDIVYELVDARIPMSSRNPM-----IEDILK--NKPRIMLLNKADKADAA----VTQQWKEHFENQG---------   71 (273)
T ss_dssp             HGGGCSEEEEEEETTSTTTTSCHH-----HHHHCS--SSCEEEEEECGGGSCHH----HHHHHHHHHHTTT---------
T ss_pred             HHHhCCEEEEEEECCCCCCCCCHH-----HHHHHc--CCCeEEEEECccCCchH----HHHHHHHHHHhcC---------
Confidence            346789999999997644322110     122222  56899999999999753    2344444443322         


Q ss_pred             cCCCCchhhcccccCCcchhhhhhhhh
Q 022736          229 RCQVDLSEVLNCRAYDATHVTRLEGLL  255 (293)
Q Consensus       229 ~~~~~~~~i~~~sa~~~~~~~~l~~~l  255 (293)
                            ...+.+|+.++.+...+..++
T Consensus        72 ------~~~i~isa~~~~~~~~~~~~~   92 (273)
T d1puja_          72 ------IRSLSINSVNGQGLNQIVPAS   92 (273)
T ss_dssp             ------CCEEECCTTTCTTGGGHHHHH
T ss_pred             ------CccceeecccCCCccccchhh
Confidence                  234567787877776665444

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.40  E-value=0.00076  Score=51.49  Aligned_cols=21  Identities=43%  Similarity=0.738  Sum_probs=18.4

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      |+++|++||||||+.+.|.+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            677899999999999999753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.40  E-value=0.00064  Score=52.26  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=18.1

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      |+++|++||||||+.+.|.+.
T Consensus         5 Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            557899999999999999753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.00075  Score=53.06  Aligned_cols=21  Identities=43%  Similarity=0.653  Sum_probs=19.1

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      |+|+|++||||||++++|++.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.37  E-value=0.00056  Score=55.57  Aligned_cols=85  Identities=12%  Similarity=0.197  Sum_probs=46.0

Q ss_pred             cccccEEEEEcccchH---HHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEe
Q 022736          151 VRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS  227 (293)
Q Consensus       151 ~~~d~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~  227 (293)
                      ..+|.++.|+.+....   ..++.      +..+.......-+||+||+|++++.+   ....+...+..+ +..     
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR------~Lv~a~~~~i~pvIvlnK~DL~~~~~---~~~~~~~~~~~y-~~~-----   73 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDR------FLVLVEANDIQPIICITKMDLIEDQD---TEDTIQAYAEDY-RNI-----   73 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHH------HHHHHHTTTCEEEEEEECGGGCCCHH---HHHHHHHHHHHH-HHH-----
T ss_pred             cccCEEEEEEECCCCCCCHHHHHH------HHHHHHHcCCCEEEEEecccccccHH---HHHHHHHHHHHH-hhc-----
Confidence            5788888887664321   11221      33344444557799999999987642   112222222211 100     


Q ss_pred             ecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736          228 VRCQVDLSEVLNCRAYDATHVTRLEGLLE  256 (293)
Q Consensus       228 ~~~~~~~~~i~~~sa~~~~~~~~l~~~l~  256 (293)
                           + -+++.+|+.++.|+++|..++.
T Consensus        74 -----g-~~v~~~Sa~~~~gl~~L~~~l~   96 (231)
T d1t9ha2          74 -----G-YDVYLTSSKDQDSLADIIPHFQ   96 (231)
T ss_dssp             -----T-CCEEECCHHHHTTCTTTGGGGT
T ss_pred             -----c-ccceeeecCChhHHHHHHHhhc
Confidence                 0 1345667777777776666654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.37  E-value=0.00089  Score=52.35  Aligned_cols=21  Identities=38%  Similarity=0.593  Sum_probs=18.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      +|+|+|.+||||||+.+.|-+
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466999999999999998853

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.34  E-value=0.00084  Score=52.11  Aligned_cols=21  Identities=38%  Similarity=0.596  Sum_probs=18.8

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      |+|.|+|||||||+.+.|.+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.34  E-value=0.00085  Score=51.99  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      |+|.|+|||||||+.+.|.+.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            677899999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0009  Score=51.73  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=18.5

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      |+|.|+|||||||..+.|.+.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567999999999999999854

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.32  E-value=0.001  Score=50.73  Aligned_cols=23  Identities=43%  Similarity=0.613  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -++.+.|.+|||||||++.+++.
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            37889999999999999999975

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.001  Score=55.72  Aligned_cols=22  Identities=41%  Similarity=0.623  Sum_probs=20.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++|+|+.|||||||++.|+..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5999999999999999999874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.00078  Score=53.76  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=19.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+|+|+|..||||||+.+.|-.
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4889999999999999998863

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.00072  Score=54.54  Aligned_cols=28  Identities=14%  Similarity=0.229  Sum_probs=23.6

Q ss_pred             CCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           28 DDVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        28 ~~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...+.|-+++.|++|+||||+++.+++.
T Consensus        29 ~~~~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          29 KSANLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HcCCCCeEEEECCCCCChHHHHHHHHHH
Confidence            3455677899999999999999999864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.28  E-value=0.00098  Score=53.73  Aligned_cols=26  Identities=23%  Similarity=0.192  Sum_probs=22.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.|-+++.|++|+||||+++.+.+.
T Consensus        43 ~~~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          43 GSMPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             TCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            35677899999999999999999863

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.27  E-value=0.0019  Score=53.38  Aligned_cols=38  Identities=29%  Similarity=0.291  Sum_probs=32.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~   70 (293)
                      -+++|+|++|+|||||+..++.+   .+|.++.+++.|...
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~   76 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV   76 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccch
Confidence            37999999999999999988753   568999999999765

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0012  Score=52.37  Aligned_cols=38  Identities=37%  Similarity=0.445  Sum_probs=29.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      .+|+|-|..||||||+++.|.+.  ..|.+..++..+|+.
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~   42 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG   42 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCC
Confidence            36888999999999999999764  346666667777764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.27  E-value=0.00088  Score=54.24  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..|-+++.|+||+||||+.+.|.++
T Consensus        34 ~~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          34 VLDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHhc
Confidence            4567899999999999999999875

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.007  Score=49.95  Aligned_cols=87  Identities=17%  Similarity=0.219  Sum_probs=53.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ++.|.|++|+|||||+-.++..  .+|..+..+..|-..    +......-  |+..+.++-.     -++..++..+.+
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~----~~~~a~~~--Gvd~d~v~~~-----~~~~~E~~~~~i  124 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIYARKL--GVDIDNLLCS-----QPDTGEQALEIC  124 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHT--TCCGGGCEEE-----CCSSHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccccc----CHHHHHHh--CCCHHHEEEe-----cCCCHHHHHHHH
Confidence            8999999999999999888764  457788888777543    22222211  1111121110     112334555666


Q ss_pred             HHHHhhcCCCCEEEEecCCCC
Q 022736          112 EQLVQRKERLDHILLETTGLA  132 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~  132 (293)
                      ..+.. ..++++++||..+..
T Consensus       125 ~~l~~-~~~~~liViDSi~al  144 (263)
T d1u94a1         125 DALAR-SGAVDVIVVDSVAAL  144 (263)
T ss_dssp             HHHHH-HTCCSEEEEECGGGC
T ss_pred             HHHHh-cCCCCEEEEECcccc
Confidence            66654 367889999988744

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.001  Score=51.60  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=18.1

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      |+|.|+|||||||+.+.|.+.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            456799999999999999853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.25  E-value=0.0013  Score=51.69  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      |..-|+|+|+|||||||+.+.|.+.
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            3445667899999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.24  E-value=0.0017  Score=53.13  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      ...|++.|+||+||||+.++|.+..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3358899999999999999998753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.22  E-value=0.0011  Score=51.82  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=18.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +.++ |+|+|||||||..+.|.+.
T Consensus         4 ~rii-l~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           4 VRAV-LLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHH
T ss_pred             cEEE-EECCCCCCHHHHHHHHHHH
Confidence            3444 6899999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0013  Score=53.49  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=24.1

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHccC
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      ....|.+++.|++|+||||+++.+.+..
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.15  E-value=0.0011  Score=53.70  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..|-+++.|+||+||||+++.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4667889999999999999999865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.15  E-value=0.0017  Score=54.33  Aligned_cols=38  Identities=24%  Similarity=0.114  Sum_probs=27.0

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc-----CCCCeEEEEEcC
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG-----KHGKRIAVILNE   67 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~-----~~~~~vavv~~d   67 (293)
                      .+.-+|+|+|.+|||||||...|...     .....+++++-|
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~D   67 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID   67 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccC
Confidence            33446789999999999999887542     123467777754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.05  E-value=0.0018  Score=52.80  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=22.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...+.++|.|++|+||||+++.+.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.02  E-value=0.0025  Score=50.16  Aligned_cols=32  Identities=34%  Similarity=0.540  Sum_probs=25.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~   65 (293)
                      +|+|.|..||||||+++.|.+.  ..|.++.++.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~   35 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA   35 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            4788999999999999999864  3466665544

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.95  E-value=0.0015  Score=51.80  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll   53 (293)
                      -+|+|+|..||||||+.+.|-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            578899999999999999886

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.91  E-value=0.015  Score=47.96  Aligned_cols=88  Identities=22%  Similarity=0.232  Sum_probs=54.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      ++-|.|++++|||||+-.++..  ..|.+++.+..|.+-    +......  -|+..+.++-..     +...++..+.+
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~----~~~~a~~--~Gvd~d~i~~~~-----~~~~E~~~~~~  127 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL----DPVYARA--LGVNTDELLVSQ-----PDNGEQALEIM  127 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHH--TTCCGGGCEEEC-----CSSHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccC----CHHHHHH--hCCCchhEEEEc-----CCCHHHHHHHH
Confidence            7999999999999999888764  457788888877543    2222221  111112211111     12334555566


Q ss_pred             HHHHhhcCCCCEEEEecCCCCC
Q 022736          112 EQLVQRKERLDHILLETTGLAN  133 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~  133 (293)
                      +.+.. ...++++|||..+..-
T Consensus       128 ~~l~~-~~~~~liIiDSi~al~  148 (268)
T d1xp8a1         128 ELLVR-SGAIDVVVVDSVAALT  148 (268)
T ss_dssp             HHHHT-TTCCSEEEEECTTTCC
T ss_pred             HHHHh-cCCCcEEEEecccccc
Confidence            66654 4678999999998443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.85  E-value=0.0023  Score=50.93  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -+|+|.|++||||||....|...
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35778999999999999999864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0022  Score=55.88  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=27.5

Q ss_pred             eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHH
Q 022736           11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYI   52 (293)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~l   52 (293)
                      .+.+.|+ +||.+.....-...++.+|+|+.||||||++.+|
T Consensus         5 ~l~l~NF-ks~~~~~~i~f~~~~l~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_           5 GLELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEeCe-eeeCCCEEEeCCCCCEEEEECCCCCCHHHHHHHH
Confidence            3667776 3444332211122447889999999999999998

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.82  E-value=0.0045  Score=49.78  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      -+++|.|+||+|||+|+..++.+  ..+.++..+..+..
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~   65 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEES   65 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCC
Confidence            37999999999999999999875  56778888887754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0022  Score=51.36  Aligned_cols=26  Identities=15%  Similarity=0.176  Sum_probs=22.5

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .++|-+++.|++|+||||++..++++
T Consensus        33 ~~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          33 GKLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             TCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCChhHHHHHHHHH
Confidence            45677889999999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0022  Score=51.33  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=22.1

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.|-+++.|++|+||||+++.+.++
T Consensus        34 ~~~~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          34 GNMPHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCchhhHHHHHHH
Confidence            45666899999999999999998753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.68  E-value=0.002  Score=52.79  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+++.+.|+||+||||+++.+++.
T Consensus        46 ~~~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          46 NMIYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred             ceEEEeECCCCCCHHHHHHHHHHH
Confidence            345667899999999999999864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0022  Score=51.54  Aligned_cols=26  Identities=35%  Similarity=0.371  Sum_probs=23.1

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      |+..|+|-|.-||||||+++.|.+..
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.61  E-value=0.02  Score=47.27  Aligned_cols=90  Identities=17%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      .++.|.|++|+|||||+-.+...  ..+.+++.+..|-.-    +......-  |+..+.++-     +.++..++..+.
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~----~~e~a~~~--GvD~d~il~-----~~~~~~E~~~~~  129 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL----DPDYAKKL--GVDTDSLLV-----SQPDTGEQALEI  129 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC----CHHHHHHH--TCCGGGCEE-----ECCSSHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccC----CHHHHHHh--CCCHHHeEE-----ecCCCHHHHHHH
Confidence            37899999999999998777653  456777777766542    22222210  111122111     112334556666


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCc
Q 022736          111 LEQLVQRKERLDHILLETTGLANP  134 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~  134 (293)
                      ++.+.. .+.++++|||..+..-|
T Consensus       130 ~~~l~~-~~~~~liIiDSi~al~~  152 (269)
T d1mo6a1         130 ADMLIR-SGALDIVVIDSVAALVP  152 (269)
T ss_dssp             HHHHHH-TTCEEEEEEECSTTCCC
T ss_pred             HHHHHh-cCCCCEEEEeccccccc
Confidence            666654 46789999999986554

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.50  E-value=0.0034  Score=51.12  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+.++|.|++|+|||||++++++.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Confidence            357889999999999999999865

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0038  Score=48.70  Aligned_cols=22  Identities=18%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++.|+|++|+|||+|...++.+
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            7999999999999999999753

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0051  Score=50.95  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=33.7

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      .....+++++|--|+||||+.-.|...  ..|+|+.++..|+.
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            344678889999999999988887653  46999999999964

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.003  Score=51.18  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.8

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..|-+++.|++|+||||++..++++
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            4566889999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0054  Score=48.74  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=26.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g   69 (293)
                      -+|+|.|..||||||+++.|.+.  ..|.++..+ .+|+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~-~~p~   41 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFPE   41 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE-eCCC
Confidence            36888899999999999998764  346666444 3554

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=95.31  E-value=0.018  Score=42.56  Aligned_cols=87  Identities=11%  Similarity=0.075  Sum_probs=47.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l  111 (293)
                      +.+++|+..|||||-+-+.++.  ..++++.++.+..-++ . ......          ......-|+.+....++...+
T Consensus         4 L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R-~-~~~i~s----------~~g~~~~~~~~~~~~~~~~~~   71 (139)
T d2b8ta1           4 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQS----------RTGTSLPSVEVESAPEILNYI   71 (139)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCC----------CCCCSSCCEEESSTHHHHHHH
T ss_pred             EEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEccccc-c-cceEEc----------ccCceeeeEEeccchhhHHHH
Confidence            4578999999999944444332  3588898888776541 1 111111          111223344444444444433


Q ss_pred             HHHHhhcCCCCEEEEecCCCCC
Q 022736          112 EQLVQRKERLDHILLETTGLAN  133 (293)
Q Consensus       112 ~~l~~~~~~~d~iiidt~G~~~  133 (293)
                      .... .....++|+||=.=+..
T Consensus        72 ~~~~-~~~~~dvI~IDE~QFf~   92 (139)
T d2b8ta1          72 MSNS-FNDETKVIGIDEVQFFD   92 (139)
T ss_dssp             HSTT-SCTTCCEEEECSGGGSC
T ss_pred             Hhhc-cccCcCEEEechhhhcc
Confidence            2111 12367889988665543

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.30  E-value=0.012  Score=43.75  Aligned_cols=85  Identities=15%  Similarity=0.177  Sum_probs=47.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~  110 (293)
                      -+-+++|+..|||||-+-+.++.  ..|+++.++.+..-++.+.+ .....  .        .....|++.....++...
T Consensus         8 ~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~~~-~i~sh--~--------g~~~~a~~~~~~~~~~~~   76 (141)
T d1xx6a1           8 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKE-DVVSH--M--------GEKEQAVAIKNSREILKY   76 (141)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------C-EEECT--T--------SCEEECEEESSSTHHHHH
T ss_pred             eEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccccccc-eeeec--c--------cceEEEEEecchhhhhhh
Confidence            45677999999999988777653  45888988887654311111 11111  1        122345555444443322


Q ss_pred             HHHHHhhcCCCCEEEEecCCCCCc
Q 022736          111 LEQLVQRKERLDHILLETTGLANP  134 (293)
Q Consensus       111 l~~l~~~~~~~d~iiidt~G~~~~  134 (293)
                          .  ..++++|+||=.=+...
T Consensus        77 ----~--~~~~dvI~IDE~QFf~d   94 (141)
T d1xx6a1          77 ----F--EEDTEVIAIDEVQFFDD   94 (141)
T ss_dssp             ----C--CTTCSEEEECSGGGSCT
T ss_pred             ----h--cccccEEEEeehhhccc
Confidence                1  24688999987665543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.27  E-value=0.017  Score=48.80  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..++++.|+||+|||.+.++|...
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            345667899999999999999864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.00058  Score=53.14  Aligned_cols=22  Identities=41%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll   53 (293)
                      .++++|+|+.||||||++.+|.
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999985

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.048  Score=39.80  Aligned_cols=37  Identities=24%  Similarity=0.127  Sum_probs=29.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +.+++|+..|||||-+-+.++.  ..|+++.++.+..-.
T Consensus         4 L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~   42 (133)
T d1xbta1           4 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT   42 (133)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC
T ss_pred             EEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEeccccc
Confidence            5678999999999988776653  457888888877654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.94  E-value=0.0063  Score=48.58  Aligned_cols=36  Identities=22%  Similarity=0.124  Sum_probs=26.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHccC--------CCCeEEEEEcCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNGK--------HGKRIAVILNEFG   69 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~--------~~~~vavv~~d~g   69 (293)
                      ++.|+|+||+|||||...++...        .+.++..+..+..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~   79 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT   79 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecch
Confidence            79999999999999999987531        2445555555443

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.92  E-value=0.007  Score=48.75  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+|+|+|..||||||+.+.|.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.012  Score=50.67  Aligned_cols=34  Identities=32%  Similarity=0.361  Sum_probs=24.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc----c--CCCCeEEEEE
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN----G--KHGKRIAVIL   65 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~----~--~~~~~vavv~   65 (293)
                      -++.+|+|+||+||||++..++.    .  ..+.++.+..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A  202 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA  202 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence            57999999999999999866532    2  2355665555

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.0079  Score=50.09  Aligned_cols=21  Identities=43%  Similarity=0.585  Sum_probs=19.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHH
Q 022736           33 GVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll   53 (293)
                      ++.+|+|+.||||||++.+|.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            588999999999999999883

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.011  Score=47.33  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      +.+|+|-|.-||||||+++.|.+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            4578999999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.71  E-value=0.0087  Score=48.10  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +++|.|+||+|||||...++.+
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999988753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.70  E-value=0.011  Score=48.13  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .-+++.|+||+|||++++++.+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            34889999999999999999864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.015  Score=47.64  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=34.1

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~   70 (293)
                      +.+-.|++++|.-|+||||+.-.|...  ..|+++.++..|+..
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~   60 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA   60 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            456778999999999999998777553  458999999999863

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.57  E-value=0.011  Score=45.66  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++|.|++|+||||+.-.|++.
T Consensus        18 vli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHc
Confidence            678999999999999999964

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.52  E-value=0.0091  Score=48.71  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHccC
Q 022736           34 VTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      -+++.|++|+|||++++++.+..
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            48899999999999999999653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.01  Score=48.69  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..-+++.|+||+|||++++++.+.
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            345889999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.41  E-value=0.013  Score=46.32  Aligned_cols=38  Identities=18%  Similarity=0.185  Sum_probs=28.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGE   70 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~   70 (293)
                      -++.|.|++|+|||+|...++.+   ..+.++..+..+...
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~   67 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP   67 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCH
Confidence            37899999999999999776532   234577777777543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.41  E-value=0.015  Score=50.56  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=18.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .-++++|.||+|||+++..|.+
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            3346789999999999988765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.30  E-value=0.01  Score=50.06  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=20.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..-+++.||||+|||.|.++|.+.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            345788999999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.24  E-value=0.011  Score=48.37  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc
Q 022736           34 VTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~   55 (293)
                      -+++.|+||+|||++++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            4788999999999999999875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.026  Score=44.68  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .+|+|-|.-||||||+++.|.+.
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            46889999999999999999765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.12  E-value=0.014  Score=46.37  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHc
Q 022736           33 GVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      -+++|+|++|+|||+|...++.
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3799999999999999999975

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.07  E-value=0.012  Score=45.38  Aligned_cols=21  Identities=33%  Similarity=0.387  Sum_probs=19.1

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++|+|.+|+||||+.-.|++.
T Consensus        17 vl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          17 VLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHc
Confidence            778999999999999999864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.96  E-value=0.017  Score=44.24  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=19.1

Q ss_pred             EEEEecCCCcHHHHHHHHHcc
Q 022736           35 TVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~   55 (293)
                      ++|+|.+|+||||+.-.|++.
T Consensus        18 vli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          18 VLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHc
Confidence            778999999999999999865

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.65  E-value=0.021  Score=47.14  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...+++|.|+.|.|||||.+++.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.018  Score=45.10  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=19.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ..-++++|.||+|||+++..|.+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            34467899999999999999975

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.017  Score=47.61  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=20.6

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      .+..-++++|.||+|||+++..|.+
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHH
Confidence            3344567899999999999999976

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.58  E-value=0.018  Score=49.60  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=22.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      +.+.+++.||||+|||+|.++|++..
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            44589999999999999999998753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.39  E-value=0.022  Score=46.80  Aligned_cols=25  Identities=28%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGK   56 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~   56 (293)
                      ..-+++.|++|+|||+|++++....
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3458899999999999999998753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.022  Score=45.52  Aligned_cols=21  Identities=24%  Similarity=0.282  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHc
Q 022736           34 VTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~   54 (293)
                      ++.|.|++|+|||+|...++.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999974

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.054  Score=43.93  Aligned_cols=37  Identities=22%  Similarity=0.089  Sum_probs=28.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHcc------------CCCCeEEEEEcCCCC
Q 022736           34 VTVITGFLGAGKSTLVNYILNG------------KHGKRIAVILNEFGE   70 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll~~------------~~~~~vavv~~d~g~   70 (293)
                      +++|+|.+|+|||||+-.|...            ..+.++.++..|.+.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~   79 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP   79 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchH
Confidence            7889999999999999887532            124467777777653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.78  E-value=0.03  Score=46.13  Aligned_cols=33  Identities=21%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             EEEEecCCCcHHHHH-HH---HHcc--CCCCeEEEEEcC
Q 022736           35 TVITGFLGAGKSTLV-NY---ILNG--KHGKRIAVILNE   67 (293)
Q Consensus        35 i~i~G~~gaGKTTli-n~---ll~~--~~~~~vavv~~d   67 (293)
                      .+|.|.|||||||.+ ++   |++.  ....++.+++..
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~t   55 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT   55 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS
T ss_pred             EEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCc
Confidence            467799999999865 33   4432  233577777643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.039  Score=46.44  Aligned_cols=27  Identities=22%  Similarity=0.354  Sum_probs=22.9

Q ss_pred             CCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           29 DVSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        29 ~~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .....+++++|++|+|||.|.+.|.+.
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhh
Confidence            344667899999999999999999875

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.29  E-value=0.047  Score=46.30  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=26.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~   68 (293)
                      ++=.|.|-|.-|+||||+++.|.+........++..||
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~EP   42 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEP   42 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCC
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhccCCCeEEEeCc
Confidence            34458899999999999999998753222223345555

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.25  E-value=0.045  Score=43.28  Aligned_cols=30  Identities=33%  Similarity=0.444  Sum_probs=22.7

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEE
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVI   64 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv   64 (293)
                      +.|.|++|+|||-|++++.++  ..+.++..+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~   70 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS   70 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEe
Confidence            668999999999999999874  234444443

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.04  Score=44.35  Aligned_cols=22  Identities=32%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHH
Q 022736           32 VGVTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll   53 (293)
                      ..+++|+|+..+||||+++.+.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            3679999999999999999985

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.039  Score=42.96  Aligned_cols=35  Identities=23%  Similarity=0.128  Sum_probs=28.6

Q ss_pred             EEEEEecC-CCcHHHHHHHHHcc--CCCCeEEEEEcCC
Q 022736           34 VTVITGFL-GAGKSTLVNYILNG--KHGKRIAVILNEF   68 (293)
Q Consensus        34 vi~i~G~~-gaGKTTlin~ll~~--~~~~~vavv~~d~   68 (293)
                      -+.|+|.- |+||||+.-.|...  ..|++|.++..++
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            46789995 99999999999874  5699999986543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.88  E-value=0.066  Score=44.98  Aligned_cols=25  Identities=24%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ...++.++|++|+|||.+.+.|.+.
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCcchHHHHHHHHHHH
Confidence            3447889999999999999999864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.84  E-value=0.046  Score=43.63  Aligned_cols=20  Identities=40%  Similarity=0.399  Sum_probs=18.5

Q ss_pred             EEEEEecCCCcHHHHHHHHH
Q 022736           34 VTVITGFLGAGKSTLVNYIL   53 (293)
Q Consensus        34 vi~i~G~~gaGKTTlin~ll   53 (293)
                      +++|+|+..+||||+++.+.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            78999999999999999874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.054  Score=47.10  Aligned_cols=30  Identities=27%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             EEEEecCCCcHHHHHHHHHcc--CCCCeEEEE
Q 022736           35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVI   64 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv   64 (293)
                      ++|+|.+|||||++++.++..  ..+..+.|+
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii   84 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIV   84 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            789999999999999888764  234444443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.05  Score=43.56  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..+++.|++|+||||+++.+.+.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHH
Confidence            35789999999999999998753

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.79  E-value=0.066  Score=38.59  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=25.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILN   66 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~   66 (293)
                      -.+.+|.++.|||||+++-.++.. .+.++.++..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~-~~~~vli~~P   41 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAA-QGYKVLVLNP   41 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHT-TTCCEEEEES
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHH-cCCcEEEEcC
Confidence            467888999999999998766543 3566666553

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.75  E-value=0.063  Score=45.37  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=24.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~   68 (293)
                      +-.|.|-|.-||||||+++.|.+...+..+ .+..||
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~~~~v-~~~~EP   39 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGSRDDI-VYVPEP   39 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC----CCE-EEECCC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhCCCCe-EEeccc
Confidence            344888999999999999999765333333 344555

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.70  E-value=0.024  Score=47.90  Aligned_cols=20  Identities=35%  Similarity=0.433  Sum_probs=18.1

Q ss_pred             EEEEecCCCcHHHHHHHHHc
Q 022736           35 TVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        35 i~i~G~~gaGKTTlin~ll~   54 (293)
                      +++.|+||+|||||++++..
T Consensus        31 vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            78899999999999999853

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.55  E-value=0.047  Score=42.84  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ...+++.|++|+||||++..+.+
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            33589999999999999998875

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.54  E-value=0.048  Score=39.00  Aligned_cols=35  Identities=14%  Similarity=0.121  Sum_probs=25.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHcc--C-C-CCeEEEEEc
Q 022736           32 VGVTVITGFLGAGKSTLVNYILNG--K-H-GKRIAVILN   66 (293)
Q Consensus        32 ~pvi~i~G~~gaGKTTlin~ll~~--~-~-~~~vavv~~   66 (293)
                      =.++.++|.+||||+|+.++|...  + + ++.+.++..
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~   44 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH   44 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecC
Confidence            346788999999999999999653  2 2 456666533

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.16  E-value=0.044  Score=45.54  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=20.9

Q ss_pred             EEEEecCCCcHHHHHH-H---HHcc--CCCCeEEEEEcC
Q 022736           35 TVITGFLGAGKSTLVN-Y---ILNG--KHGKRIAVILNE   67 (293)
Q Consensus        35 i~i~G~~gaGKTTlin-~---ll~~--~~~~~vavv~~d   67 (293)
                      ++|.|.+||||||.+- +   |+..  ....++.++...
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t   65 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT   65 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS
T ss_pred             EEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEecc
Confidence            5677999999997653 2   3432  223467776643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=90.78  E-value=0.085  Score=44.59  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=25.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHccC--CCCeEEEEEcCC
Q 022736           33 GVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNEF   68 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~~--~~~~vavv~~d~   68 (293)
                      =.|.|-|.-||||||+++.|.+..  .+.++ ++..||
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v-~~~~EP   42 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRI-LLIGEP   42 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGE-EEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCce-EEEeCc
Confidence            347889999999999999998753  23333 445555

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.65  E-value=0.052  Score=42.50  Aligned_cols=25  Identities=20%  Similarity=0.115  Sum_probs=21.4

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +.-.+++.|++++|||+|+++|+.-
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            3457888999999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.30  E-value=0.089  Score=46.35  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHcc
Q 022736           33 GVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        33 pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      .=|+++||+|+|||-|.++|.+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHHH
Confidence            35888999999999999999863

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.79  E-value=1.9  Score=32.56  Aligned_cols=59  Identities=20%  Similarity=0.415  Sum_probs=37.2

Q ss_pred             hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736          186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  258 (293)
Q Consensus       186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~  258 (293)
                      ..-+++|+=-++.+....+....+.+...++..++..++             +..|| |-.+.+++.+|+...
T Consensus       137 ~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~-------------l~lSA-Tl~n~~~~~~~l~~~  195 (202)
T d2p6ra3         137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRV-------------IGLSA-TAPNVTEIAEWLDAD  195 (202)
T ss_dssp             GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEE-------------EEEEC-CCTTHHHHHHHTTCE
T ss_pred             hhhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcE-------------EEEcC-CCCcHHHHHHHcCCC
Confidence            345788887777665554434556677778888776544             34455 333567788888543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.56  E-value=0.16  Score=41.37  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=21.0

Q ss_pred             ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        31 ~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      +--.+.+.|++++|||+|++.|..-
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3456778899999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=86.29  E-value=0.18  Score=43.12  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~~   55 (293)
                      ..+.-++++||.|+|||-+.++|.+.
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhh
Confidence            34556999999999999999999764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.09  E-value=0.27  Score=38.02  Aligned_cols=25  Identities=8%  Similarity=-0.222  Sum_probs=22.4

Q ss_pred             CceeEEEEEecCCCcHHHHHHHHHc
Q 022736           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (293)
Q Consensus        30 ~~~pvi~i~G~~gaGKTTlin~ll~   54 (293)
                      ...|-+++.|++|+||||+...+.+
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4578899999999999999999875

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.36  E-value=0.21  Score=35.31  Aligned_cols=32  Identities=31%  Similarity=0.329  Sum_probs=19.7

Q ss_pred             EEEEEecCCCcHHHHH-HHHHcc--CCCCeEEEEE
Q 022736           34 VTVITGFLGAGKSTLV-NYILNG--KHGKRIAVIL   65 (293)
Q Consensus        34 vi~i~G~~gaGKTTli-n~ll~~--~~~~~vavv~   65 (293)
                      .+++.+++|||||..+ ..++..  ..+.++.++.
T Consensus         9 ~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            4577889999999443 444432  2345555554

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=80.34  E-value=0.39  Score=39.93  Aligned_cols=17  Identities=47%  Similarity=0.722  Sum_probs=14.8

Q ss_pred             eEEEEEecCCCcHHHHH
Q 022736           33 GVTVITGFLGAGKSTLV   49 (293)
Q Consensus        33 pvi~i~G~~gaGKTTli   49 (293)
                      -+.++.|.+|+|||||.
T Consensus        15 ~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CEEEEEECTTSCHHHHT
T ss_pred             CEEEEEccCCCCccccc
Confidence            46799999999999964

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=80.29  E-value=0.38  Score=39.86  Aligned_cols=17  Identities=47%  Similarity=0.722  Sum_probs=14.7

Q ss_pred             eEEEEEecCCCcHHHHH
Q 022736           33 GVTVITGFLGAGKSTLV   49 (293)
Q Consensus        33 pvi~i~G~~gaGKTTli   49 (293)
                      -+.++.|.+|+|||||-
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            46689999999999965