Citrus Sinensis ID: 022750

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MEGGSSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCFPPNFDSELFKAIHDFVMSKDNRSDDTDPDSDTDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHENHQKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQENAELIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQECK
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHcHHcccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcHccccccHHHHHHHHHHHHHccHHHcccccccccccccccccccccccEEEccccccccccccccccccccccccEEcccccccccccccccccHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
meggssgtrrtrsqvgpdwsskEALILVNEIAAVEADCLKALSSYQKWKIISEtctaldvprtanqcrRKWDSLLDEYKKMIVrsrtfpnsqtqthtdcfppnfdsELFKAIHDFVmskdnrsddtdpdsdtdpeadfSEAISQAQLGSKRQRRQsmrvkhcaeqkplksclhenhqksgcteeklcnshveeeprIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQENAELIHAIVAesadysdadlnnvQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQECK
Flexible Loop (DISEMBL)
meggssgtrrtrsqvgpdwsskEALILVNEIAAVEADCLKALSSYQKWKIISEtctaldvprtanqcrrkwDSLLDEYKKMIVRsrtfpnsqtqthtdcfpPNFDSELFKAIHDFVMSKDNRSDDTDPDSDTDPEADFSEAISqaqlgskrqrrqSMRVKHCaeqkplksclhenhqksgcteeklcnshveeeprirlvekkcqnsrikekkslkscVEENEQMMVAKLQENAELIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQECK
Low Complexity Region (SEG)
MEGGSSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCFPPNFDSELFKAIHDFVMSKDNRsddtdpdsdtdpEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHENHQKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQENAELIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQECK
Disordered region (IsUnstruct)
**********************EALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFP*****THTDCFPPNFDSELFKAIHDFV****************************************************************************************************************KLQENAELIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTD******
Disordered Region (DISOPRED)
*********************KEALILVNE*****************WKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCFPPNFDSELFKAIH************************************************************************************************************************************************LESEFVRRQGDKLIACLGEIVNTLNQFTDHVQEC*
Disordered Region (DISEMBL)
******************WSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCFPPNFDSELFKAIHDFVMSK****************ADFSEAISQA*******************QKPLKSCLHENHQKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQENAELIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQECK
Disordered Region (DISPRO)
****************PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCFPPNFDSELFKAIHDFVMSKD*************************************************************************************************CVEENEQMMVAKLQENAELIHAIVAESADYS*ADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQECK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGSSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCFPPNFDSELFKAIHDFVMSKDNRSDDTDPDSDTDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHENHQKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQENAELIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQECK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
449437322	311	PREDICTED: uncharacterized protein LOC10	0.955	0.897	0.422	6e-49
225429854	274	PREDICTED: uncharacterized protein LOC10	0.753	0.802	0.440	2e-48
296081798	250	unnamed protein product [Vitis vinifera]	0.753	0.88	0.440	3e-48
2827522	291	hypothetical protein [Arabidopsis thalia	0.965	0.969	0.411	7e-48
30688985	294	sequence-specific DNA binding transcript	0.962	0.955	0.406	6e-47
224115628	319	predicted protein [Populus trichocarpa]	0.866	0.793	0.405	2e-46
224121236	291	predicted protein [Populus trichocarpa]	0.928	0.931	0.408	2e-46
255574163	419	transcription factor, putative [Ricinus	0.948	0.661	0.363	8e-45
357436685	319	hypothetical protein MTR_1g009220 [Medic	0.924	0.846	0.389	3e-43
356565840	316	PREDICTED: uncharacterized protein LOC10	0.931	0.860	0.383	8e-43

>gi|449437322|ref|XP_004136441.1| PREDICTED: uncharacterized protein LOC101210084 [Cucumis sativus] gi|449511974|ref|XP_004164105.1| PREDICTED: uncharacterized LOC101210084 [Cucumis sativus]

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/310 (42%), Positives = 181/310 (58%), Gaps = 31/310 (10%)

Query: 4   GSSGTRRTRSQ--VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVP 61
           G SG+RRTRSQ  V P W++ + L+LVN IAAVEADCLKALSSYQKWKI++E CT+LDV 
Sbjct: 12  GVSGSRRTRSQIAVAPGWTAADCLVLVNVIAAVEADCLKALSSYQKWKIVAENCTSLDVV 71

Query: 62  RTANQCRRKWDSLLDEYKKMIVRSRTFPN-------SQTQTHTDCFPPNFDSELFKAIHD 114
           RT+NQCRRKWD LL E+  +       P+       +  +      P NFD ELFKAI +
Sbjct: 72  RTSNQCRRKWDCLLIEHDVIKQWELKMPDDDSYWCLASGRRKELGLPENFDEELFKAIDN 131

Query: 115 FVMSKDNRSDDTDPDSDTDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHE 174
               + N+S DT+PDS  DPEA    A   A+ G KRQRR+SM   +   +K L+     
Sbjct: 132 VASMRANQS-DTEPDS--DPEAAIGNADEIAEPGPKRQRRRSMSKSNQVLEKSLEC---- 184

Query: 175 NHQKSGCTEEKLCNSHVEE-----------EPRIRLVEKKCQNSRIKEKKS-LKSCVEEN 222
             +++   E  L    VE+           +P +   E + +   IK  +S +   +E  
Sbjct: 185 --ERNLGLEISLECKEVEDRGERGGEEVEEKPLLSSPELEPRECYIKSNESKVTDNIEPK 242

Query: 223 EQMMVAKLQENAELIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLN 282
           EQMM   L ENAE + AIV+E+A+Y+ +D    +D ++  VR QG KLI CLG+I+NT+N
Sbjct: 243 EQMMAKFLLENAEKVQAIVSENAEYTTSDEKCAKD-QTNLVRHQGSKLIRCLGDILNTIN 301

Query: 283 QFTDHVQECK 292
                +++C+
Sbjct: 302 DLRGLLEDCE 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429854|ref|XP_002283217.1| PREDICTED: uncharacterized protein LOC100255883 isoform 1 [Vitis vinifera] gi|359476329|ref|XP_003631820.1| PREDICTED: uncharacterized protein LOC100255883 isoform 2 [Vitis vinifera]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/288 (44%), Positives = 162/288 (56%), Gaps = 68/288 (23%)

Query: 14  QVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73
           Q+ PDW+  ++LILVNEIAAVE +CL ALS+YQKWKII+E CTALDV RT NQCRRKWDS
Sbjct: 44  QLAPDWTINDSLILVNEIAAVEGECLNALSTYQKWKIIAENCTALDVSRTFNQCRRKWDS 103

Query: 74  LLDEY---KKMIVRSR--TFPNSQTQTHTDC-FPPNFDSELFKAIHDFVMSKDNRSDDTD 127
           LL EY   KK   RSR  +F   +++   +   P +F+ ELFKAI D V S++ RS DTD
Sbjct: 104 LLFEYNKIKKWESRSRNVSFWTLESERRRELGLPVDFERELFKAIDDLVSSQEVRS-DTD 162

Query: 128 PDSDTDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHENHQKSGCTEEKLC 187
           P +D + E D  E I  A+ G K+Q+R+ M                   QK+   EEK  
Sbjct: 163 PGTDPEAEDDRLEVI--AEYGPKKQKRREM------------------PQKTTSLEEK-- 200

Query: 188 NSHVEEEPRIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQENAELIHAIV----AE 243
                                              EQMMV KL+ENA+LI AIV     +
Sbjct: 201 -----------------------------------EQMMVMKLRENADLIDAIVKGNLVD 225

Query: 244 SADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQEC 291
           S D+      N + L+++F RRQGDKLIACL +I +TL+Q  D VQ+C
Sbjct: 226 SVDFGLGGSKNRETLQADFKRRQGDKLIACLRDIADTLDQLRDIVQKC 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081798|emb|CBI20803.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/288 (44%), Positives = 162/288 (56%), Gaps = 68/288 (23%)

Query: 14  QVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73
           Q+ PDW+  ++LILVNEIAAVE +CL ALS+YQKWKII+E CTALDV RT NQCRRKWDS
Sbjct: 20  QLAPDWTINDSLILVNEIAAVEGECLNALSTYQKWKIIAENCTALDVSRTFNQCRRKWDS 79

Query: 74  LLDEY---KKMIVRSR--TFPNSQTQTHTDC-FPPNFDSELFKAIHDFVMSKDNRSDDTD 127
           LL EY   KK   RSR  +F   +++   +   P +F+ ELFKAI D V S++ RS DTD
Sbjct: 80  LLFEYNKIKKWESRSRNVSFWTLESERRRELGLPVDFERELFKAIDDLVSSQEVRS-DTD 138

Query: 128 PDSDTDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHENHQKSGCTEEKLC 187
           P +D + E D  E I  A+ G K+Q+R+ M                   QK+   EEK  
Sbjct: 139 PGTDPEAEDDRLEVI--AEYGPKKQKRREM------------------PQKTTSLEEK-- 176

Query: 188 NSHVEEEPRIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQENAELIHAIV----AE 243
                                              EQMMV KL+ENA+LI AIV     +
Sbjct: 177 -----------------------------------EQMMVMKLRENADLIDAIVKGNLVD 201

Query: 244 SADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQEC 291
           S D+      N + L+++F RRQGDKLIACL +I +TL+Q  D VQ+C
Sbjct: 202 SVDFGLGGSKNRETLQADFKRRQGDKLIACLRDIADTLDQLRDIVQKC 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2827522|emb|CAA16530.1| hypothetical protein [Arabidopsis thaliana] gi|7270029|emb|CAB79845.1| hypothetical protein [Arabidopsis thaliana]

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 179/301 (59%), Gaps = 19/301 (6%)

Query: 1   MEGGSSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDV 60
           ME G+SG+RRTRSQV P+W+ K+ L+LVNEIAAVEADC  ALSS+QKW +I+E C ALDV
Sbjct: 1   MEEGTSGSRRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDV 60

Query: 61  PRTANQCRRKWDSLLDEY---KKMIVRSRTFPNSQTQTHTD-----CFPPNFDSELFKAI 112
            R  NQCRRKWDSL+ +Y   KK   + R    S     +D       P + D ELF+AI
Sbjct: 61  SRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAI 120

Query: 113 HDFVMSKDNRSDDTDPDSDTDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCL 172
           +  VM +D ++     +SD+DPEA     +S A+LGSKR R+++M +K   +++P  S +
Sbjct: 121 NAVVMIQDEKA---GTESDSDPEAQDVVDLS-AELGSKRSRQRTMVMKETKKEEPRTSRV 176

Query: 173 HENHQKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQE 232
             N      T EK   +    + +    +K  ++    E++     +EE+ ++M AKL  
Sbjct: 177 QVN------TREKPITTKATHQNKTMGEKKPVEDMSTDEEEDETMNIEEDVEVMEAKLSY 230

Query: 233 NAELIHAIVAESADYSDADLNNV-QDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQEC 291
             +LIHAIV  +    +   + V  D + + VR+QGD+LI CL EIV+TLN+  +  QE 
Sbjct: 231 KIDLIHAIVGRNLAKDNETKDGVSMDDKLKSVRQQGDELIGCLSEIVSTLNRLHEVPQEI 290

Query: 292 K 292
           +
Sbjct: 291 E 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688985|ref|NP_194855.2| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|26452367|dbj|BAC43269.1| unknown protein [Arabidopsis thaliana] gi|28950855|gb|AAO63351.1| At4g31270 [Arabidopsis thaliana] gi|332660484|gb|AEE85884.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana]

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 179/305 (58%), Gaps = 24/305 (7%)

Query: 1   MEGGSSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDV 60
           ME G+SG+RRTRSQV P+W+ K+ L+LVNEIAAVEADC  ALSS+QKW +I+E C ALDV
Sbjct: 1   MEEGTSGSRRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDV 60

Query: 61  PRTANQCRRKWDSLLDEY---KKMIVRSRTFPNSQTQTHTD-----CFPPNFDSELFKAI 112
            R  NQCRRKWDSL+ +Y   KK   + R    S     +D       P + D ELF+AI
Sbjct: 61  SRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAI 120

Query: 113 HDFVMSKDNRSDDTDPDSDTDPEA----DFSEAISQAQLGSKRQRRQSMRVKHCAEQKPL 168
           +  VM +D ++     +SD+DPEA    D S  +  A +GSKR R+++M +K   +++P 
Sbjct: 121 NAVVMIQDEKA---GTESDSDPEAQDVVDLSAEL--AFVGSKRSRQRTMVMKETKKEEPR 175

Query: 169 KSCLHENHQKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVA 228
            S +  N      T EK   +    + +    +K  ++    E++     +EE+ ++M A
Sbjct: 176 TSRVQVN------TREKPITTKATHQNKTMGEKKPVEDMSTDEEEDETMNIEEDVEVMEA 229

Query: 229 KLQENAELIHAIVAESADYSDADLNNV-QDLESEFVRRQGDKLIACLGEIVNTLNQFTDH 287
           KL    +LIHAIV  +    +   + V  D + + VR+QGD+LI CL EIV+TLN+  + 
Sbjct: 230 KLSYKIDLIHAIVGRNLAKDNETKDGVSMDDKLKSVRQQGDELIGCLSEIVSTLNRLHEV 289

Query: 288 VQECK 292
            QE +
Sbjct: 290 PQEIE 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115628|ref|XP_002332103.1| predicted protein [Populus trichocarpa] gi|222874923|gb|EEF12054.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/316 (40%), Positives = 176/316 (55%), Gaps = 63/316 (19%)

Query: 8   TRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQC 67
           T RTRSQV P+W++K+ALILVNEIAAVE DC KA+S+ QKWKII   C AL V  T +QC
Sbjct: 33  TPRTRSQVSPEWTAKQALILVNEIAAVEKDCSKAVSTNQKWKIIVGNCVALGVTHTLSQC 92

Query: 68  RRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCF-------------PPNFDSELFKAIHD 114
           R KW+SL+ EY ++    +     ++++ +D +             P NFD ELFKAI D
Sbjct: 93  RSKWNSLVIEYNQIKKWDK-----ESESRSDFYWSLGCERRKEFGLPENFDDELFKAIDD 147

Query: 115 FVMSKDNRSDDTDPDSDTDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHE 174
           ++ S+  +  DTDPD+D   +AD  + I+                        L+  + E
Sbjct: 148 YMWSQKEQL-DTDPDTDLQ-KADLLDVIAN-----------------------LERYVEE 182

Query: 175 NHQKSGCT---------EEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLKS------CV 219
           NHQ + CT         EE+L    V+E+P+ RL ++K Q     EK  + S        
Sbjct: 183 NHQ-TCCTKEKPQTIPAEEELHEIQVKEKPQKRLRKEKPQIGNGDEKPKIYSGRKKMPST 241

Query: 220 EENEQMMVAKLQENAELIHAIV----AESADYSDADLNNVQDLESEFVRRQGDKLIACLG 275
           E+ EQMMV KL ENAE+I A+V     E AD   AD NN++  +++ +R QGDKLIACL 
Sbjct: 242 EDMEQMMVEKLSENAEMIQAVVNGNLPEMADLEAADSNNIEGFKTDLIRSQGDKLIACLE 301

Query: 276 EIVNTLNQFTDHVQEC 291
            IVNT+ QF   +Q+ 
Sbjct: 302 NIVNTMRQFPWLLQDA 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121236|ref|XP_002330777.1| predicted protein [Populus trichocarpa] gi|222872579|gb|EEF09710.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/306 (40%), Positives = 170/306 (55%), Gaps = 35/306 (11%)

Query: 5   SSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTA 64
           SS T RTRSQV P+W++KEALILVNEIAAVE DCLKALS+YQKWKII + C  LDV R  
Sbjct: 1   SSSTPRTRSQVSPEWTTKEALILVNEIAAVEKDCLKALSTYQKWKIIVDNCVVLDVARNL 60

Query: 65  NQCRRKWDSLLDEY-------KKMIVRSRTFPNSQTQTHTDC-FPPNFDSELFKAIHDFV 116
           NQCR KW+SL++EY       K+   RS  + + +++   +   P NF+ ELF+AI D++
Sbjct: 61  NQCRTKWNSLVNEYNLIKNWDKESESRSDFYWSLESERRREFGLPENFNDELFRAIDDYM 120

Query: 117 MSKDNRSDDTDPDSDTDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHENH 176
               ++                SE        +  +  Q+     C  +KP         
Sbjct: 121 WC--HKEHPDTDPDPDPDPDTDSEKPDLLHAITNPENHQTC----CTNEKP--------- 165

Query: 177 QKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLK-------SCVEENEQMMVAK 229
            +S   E +L  SH EE+P+    ++  QN+   EK  +           EE +QMMV K
Sbjct: 166 -QSILAETQLQESHEEEKPQKCRRKENSQNAHGDEKPKIHRGRKKKMPSTEEMKQMMVEK 224

Query: 230 LQENAELIHAIV----AESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFT 285
           L ENAE+I A+V     E AD   AD  N++  +++ +RRQGDKLIACL  IVN++NQF 
Sbjct: 225 LHENAEMIQAVVNGNFPEMADLEAADSKNIEGFKTDLIRRQGDKLIACLQNIVNSINQFP 284

Query: 286 DHVQEC 291
             +QEC
Sbjct: 285 CLLQEC 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574163|ref|XP_002527997.1| transcription factor, putative [Ricinus communis] gi|223532623|gb|EEF34409.1| transcription factor, putative [Ricinus communis]

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 186/385 (48%), Gaps = 108/385 (28%)

Query: 10  RTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRR 69
           RTRSQV PDW++KE+LILVNEIAAVE DCLKALS++QKW II + C+ LDV RT NQCR 
Sbjct: 39  RTRSQVAPDWTTKESLILVNEIAAVEGDCLKALSTHQKWNIIVQNCSVLDVSRTLNQCRS 98

Query: 70  KWDSLLDEYKKM------IVRSRTFPNSQTQTHTDC-FPPNFDSELFKAIHDFVMSKDNR 122
           KW SLL +Y ++           ++      T   C  P NFD ELF+AI  +V ++ + 
Sbjct: 99  KWSSLLADYNRIKQWDSKSSSESSYWLLDPPTRDRCGLPHNFDYELFRAIDHYVRAQKDH 158

Query: 123 SDDTDPDSDTDPEADFSEAISQAQLGSKRQRRQSMRVK--------HC----------AE 164
            D    D+D + +AD  + I  A+LGSKR RR+SM +K        +C          AE
Sbjct: 159 PDTDP-DTDPEADADLLDVI--AKLGSKRHRRRSMSLKIQPEETSQNCCTKEQAQILHAE 215

Query: 165 QKPLKSCLHENHQ--------------------------KSGCTEEKLCNSHVEEEPRIR 198
           ++P +SC  EN Q                          +  C       SHVEE+P+  
Sbjct: 216 EEPQQSCKEENLQMRYDKDQPQTVDRGEEPQDNLMEEQSQESCRFGNPEKSHVEEKPQES 275

Query: 199 LVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQENAELIHAIVAESA------------- 245
           LVE++ +N  + +KK   +  EE EQ++V KL  NAE I  +V  S              
Sbjct: 276 LVEEEPKNISMWKKKI--TGTEEKEQLIVEKLHGNAESIRGVVQGSLPEVVEFGAGDSKS 333

Query: 246 ---------------------------------------DYSDADLNNVQDLESEFVRRQ 266
                                                  D    +L   ++  ++ +RRQ
Sbjct: 334 RDSLVVEKSKIIRTRKKKTSGAEEMMMVEKLRANAELIHDIVQGNLPQSENCPTDVIRRQ 393

Query: 267 GDKLIACLGEIVNTLNQFTDHVQEC 291
           GDKLIACLGEIVN LNQF   VQEC
Sbjct: 394 GDKLIACLGEIVNILNQFPYLVQEC 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436685|ref|XP_003588618.1| hypothetical protein MTR_1g009220 [Medicago truncatula] gi|355477666|gb|AES58869.1| hypothetical protein MTR_1g009220 [Medicago truncatula]

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/326 (38%), Positives = 172/326 (52%), Gaps = 56/326 (17%)

Query: 7   GTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQ 66
           G+RRTRSQ  P+W+  E+LIL+NEIAAVEADC    SSYQ+W IIS+ C ALDV R   Q
Sbjct: 10  GSRRTRSQAAPEWTLTESLILLNEIAAVEADCSVNFSSYQQWDIISQNCAALDVDRNLAQ 69

Query: 67  CRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCFPPNFDSELFKAIHDFVMSKDNRSDDT 126
           CRRKW SLL EY+++  R R +              N D ELF A+   V  ++ R  + 
Sbjct: 70  CRRKWRSLLAEYEEVRRRRRAW--------------NLDRELFDAVERVVKGREERG-EV 114

Query: 127 DPDSD---TDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSC------------ 171
           D +SD    + E D +  I     G KR+R +S +V+  + QKP K              
Sbjct: 115 DRESDGELGNEERDVTVEIDMIGTGFKRKRPRS-KVERNSVQKPKKYWPVEPSENLKEKQ 173

Query: 172 ----LHENHQKSGCTEEKLCNSHVEEEPRIRL--------VEKKCQN-------SRIKEK 212
               +HE   ++   EE+     +E++P+++         +E   QN         I++ 
Sbjct: 174 VPEEIHEEVPENNHMEEEFLKDFLEKKPKLKSPAKRRQKHIETPLQNLPEVDKHHDIEKP 233

Query: 213 KS------LKSCVEENEQMMVAKLQENAELIHAIVAESADYSDADLNNVQDLESEFVRRQ 266
           K         +  EENE+M+  KLQE A  I  I AESAD  +A+  N++D  +EF RRQ
Sbjct: 234 KPASVGNITNNSREENEEMLTLKLQELAIEIQEISAESADCKEANTENIEDYRTEFTRRQ 293

Query: 267 GDKLIACLGEIVNTLNQFTDHVQECK 292
           GDKLIA LG   NTL Q  D +QECK
Sbjct: 294 GDKLIARLGNFSNTLKQLCDLLQECK 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565840|ref|XP_003551144.1| PREDICTED: uncharacterized protein LOC100775406 [Glycine max]

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/318 (38%), Positives = 163/318 (51%), Gaps = 46/318 (14%)

Query: 5   SSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTA 64
            S  RRTRSQ  PDWS  E+LILVNE+AAVEADC  ALSSYQ+W II+E C ALDVPR+ 
Sbjct: 15  GSAVRRTRSQAEPDWSVTESLILVNEVAAVEADCSVALSSYQQWNIIAENCAALDVPRSL 74

Query: 65  NQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCFPPNFDSELFKAIHDFVMSKDNRSD 124
            QCRRKW +LL++Y       R              PP F+ E+F+A+   V +++ R  
Sbjct: 75  PQCRRKWRALLNDYDGARGERR------------ALPPGFEREVFEAVERVVRAREERG- 121

Query: 125 DTDPDSDTDPEADFSEAISQAQLGSKRQRRQS------MRVKHCAEQKPLKSCLHENHQK 178
             DP+SD D E    E  +  ++GSKR+R++S       + K   EQ+P  S   E  + 
Sbjct: 122 LVDPESD-DEEDGNDEHDATVEIGSKRKRQRSKSRHQVQKPKKFHEQRPDDSH-EEGPED 179

Query: 179 SGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLKSC-------------------- 218
              +E++     +E  P+++   ++     +   KSL                       
Sbjct: 180 DDNSEDEYLKDFLESRPKLKGTAERPPKHLVMPPKSLGEVELNENYHQIERPKPIGTERI 239

Query: 219 ---VEENEQMMVAKLQENAELIHAIVAES-ADYSDADLNNVQDLESEFVRRQGDKLIACL 274
               EENE+ +  KLQE A  I AI +ES ADY      N++D   +F R QGDKLI  L
Sbjct: 240 TISREENEETLSLKLQELAVEIEAIASESAADYKGGGSQNLED-SYDFTRGQGDKLIVSL 298

Query: 275 GEIVNTLNQFTDHVQECK 292
           G   NTL    D  QECK
Sbjct: 299 GNFFNTLKCLCDTPQECK 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
TAIR|locus:2128186	294	AT4G31270 [Arabidopsis thalian	0.965	0.959	0.393	3.4e-45
TAIR|locus:2051174	314	AT2G33550 [Arabidopsis thalian	0.924	0.859	0.227	3.4e-05

TAIR|locus:2128186 AT4G31270 [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 118/300 (39%), Positives = 170/300 (56%)

Query:     1 MEGGSSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDV 60
             ME G+SG+RRTRSQV P+W+ K+ L+LVNEIAAVEADC  ALSS+QKW +I+E C ALDV
Sbjct:     1 MEEGTSGSRRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDV 60

Query:    61 PRTANQCRRKWDSLLDEY---KKMIVRSRTFPNSQTQTHTDC-----FPPNFDSELFKAI 112
              R  NQCRRKWDSL+ +Y   KK   + R    S     +D       P + D ELF+AI
Sbjct:    61 SRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAI 120

Query:   113 HDFVMSKDNRXXXXXXXXXXXXEA-DFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSC 171
             +  VM +D +            +  D S  +  A +GSKR R+++M +K   +++P  S 
Sbjct:   121 NAVVMIQDEKAGTESDSDPEAQDVVDLSAEL--AFVGSKRSRQRTMVMKETKKEEPRTSR 178

Query:   172 LHENHQKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEKKSLKSCVEENEQMMVAKLQ 231
             +  N      T EK   +    + +    +K  ++    E++     +EE+ ++M AKL 
Sbjct:   179 VQVN------TREKPITTKATHQNKTMGEKKPVEDMSTDEEEDETMNIEEDVEVMEAKLS 232

Query:   232 ENAELIHAIVAESADYSDADLNNVQ-DLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQE 290
                +LIHAIV  +    +   + V  D + + VR+QGD+LI CL EIV+TLN+  +  QE
Sbjct:   233 YKIDLIHAIVGRNLAKDNETKDGVSMDDKLKSVRQQGDELIGCLSEIVSTLNRLHEVPQE 292

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051174 AT2G33550 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 69/303 (22%), Positives = 119/303 (39%)

Query:     2 EGGSSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLK------ALSSYQ---KWKIIS 52
             +GG  G +  R    P W+ +E L+L+      E    +      AL S Q   KW  +S
Sbjct:    25 DGGDDGVKTARL---PRWTRQEILVLIQGKRVAENRVRRGRAAGMALGSGQMEPKWASVS 81

Query:    53 ETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDCF-PPNFDSELFKA 111
               C    V R   QCR++W +L  +YKK+    + +  SQ +  T+ +     D    K 
Sbjct:    82 SYCKRHGVNRGPVQCRKRWSNLAGDYKKI----KEW-ESQIKEETESYWVMRNDVRREKK 136

Query:   112 IHDFVMSK--DNRXXXXXXXXXXXXEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLK 169
             +  F   +  D                  + A  +  L    +R    ++      K + 
Sbjct:   137 LPGFFDKEVYDIVDGGVIPPAVPVLSLGLAPASDEGLLSDLDRRESPEKLNSTPVAKSVT 196

Query:   170 SCLHENHQKSGCTEEKLCNSHVEEEPRIRLVE--KKCQNSRIKEKKSLKSCVEENEQMMV 227
               + +  Q++ C  ++      E++P    VE     Q  R +++ S     EE E+   
Sbjct:   197 DVIDKEKQEA-CVADQ--GRVKEKQPEAANVEGGSTSQEERKRKRTSFGEKEEEEEEGET 253

Query:   228 AKLQENAELIHAIVAESADYSDADLNNVQDLESEFVRRQ----GDKLIACLGEIVNTLNQ 283
              K+Q   +LI  I+  +     A L  VQ+L  +  R Q    GD L+A L ++ + + +
Sbjct:   254 KKMQN--QLIE-ILERNGQLLAAQLE-VQNLNLKLDREQRKDHGDSLVAVLNKLADAVAK 309

Query:   284 FTD 286
               D
Sbjct:   310 IAD 312


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.127   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      292       280   0.00082  115 3  11 23  0.39    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  223 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.82u 0.10s 26.92t   Elapsed:  00:00:01
  Total cpu time:  26.82u 0.10s 26.92t   Elapsed:  00:00:01
  Start:  Mon May 20 16:21:10 2013   End:  Mon May 20 16:21:11 2013

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032370001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (274 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
pfam13837	84	pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi	4e-05
cd12203	66	cd12203, GT1, GT1, myb-like, SANT family	2e-04

>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 42 LSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKK----MIVRSRTFP 89
            +   W+ I+E        R+A QC+ KW +L  +YKK          ++P
Sbjct: 29 KRNKHVWEEIAEKMAERGYNRSAEQCKEKWKNLKKKYKKEKESNKGSGSSWP 80

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84

>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 19 WSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEY 78
          W  +E L L+     +E+   +  S    W+ I+     L   R+A QC+ KW++L   Y
Sbjct: 3  WPREETLSLIRLRREMESRFQETKSKKALWEEIAAKMRELGYNRSAKQCKEKWENLNKYY 62

Query: 79 KK 80
          KK
Sbjct: 63 KK 64

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	99.55
KOG4282	345	consensus Transcription factor GT-2 and related pr	99.11
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	98.3
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.89
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	97.49
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	97.42
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	97.06
PLN03212	249	Transcription repressor MYB5; Provisional	96.71
PLN03091	459	hypothetical protein; Provisional	96.01
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	95.87
PLN03212	249	Transcription repressor MYB5; Provisional	94.21
smart00595	89	MADF subfamily of SANT domain.	93.77
PLN03091	459	hypothetical protein; Provisional	93.66
PF10545	85	MADF_DNA_bdg: Alcohol dehydrogenase transcription	92.52
KOG0048	238	consensus Transcription factor, Myb superfamily [T	89.93
KOG1279	506	consensus Chromatin remodeling factor subunit and	86.78

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=99.55  E-value=1.5e-14  Score=110.06  Aligned_cols=66  Identities=29%  Similarity=0.533  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHHHHHHH--HHhhhhh--ccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhh
Q 022750           17 PDWSSKEALILVNEIAA--VEADCLK--ALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMI   82 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~a--ve~d~~r--s~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr   82 (292)
                      ++||.+||+.||+.+..  ++..+..  .+.+...|..||+.|..+||.|++.||+.||+||...|++++
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k   71 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK   71 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            58999999999998877  4444543  567778999999999999999999999999999999999996

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=99.11  E-value=5.1e-10  Score=105.35  Aligned_cols=90  Identities=20%  Similarity=0.409  Sum_probs=73.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcCCCCCCCCChhc
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQT   95 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~~~SYW~Ms~~e   95 (292)
                      .++|+..||++||.++..+...+.++......|+.||..|..+||.|++.||+.||+||...||+.+.+...-       
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~-------  126 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGS-------  126 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCC-------
Confidence            7999999999999988877777888888899999999999999999999999999999999999997322100       


Q ss_pred             hhhcCCCCCcHHHHHHHHHHhh
Q 022750           96 HTDCFPPNFDSELFKAIHDFVM  117 (292)
Q Consensus        96 Rke~LP~~FD~EVFdALd~f~~  117 (292)
                           ...-.-.+|..|+.++.
T Consensus       127 -----~~~s~~~ff~~le~~~~  143 (345)
T KOG4282|consen  127 -----GEGSSWKFFSELEALLI  143 (345)
T ss_pred             -----CCCccchHHHHHHHHHh
Confidence                 01122356777777775

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=98.30  E-value=4.8e-06  Score=62.80  Aligned_cols=65  Identities=31%  Similarity=0.474  Sum_probs=52.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhc--------cChHHhHHHHHHHhhhcCC-CCChhHHhHHHHHHHHHHhh
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKA--------LSSYQKWKIISETCTALDV-PRTANQCRRKWDSLLDEYKK   80 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs--------~Sa~eKW~~Vae~c~~~Gv-~Rs~~QCr~KW~NLl~dYKk   80 (292)
                      |+|+||..|..+||+.+. .+.+...+        ......|..|+..+.+.|. .|++.|++.+|.||...-|+
T Consensus         1 R~~~fs~~E~~~Lv~~v~-~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVE-KHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCCHHHHHHHHHHHH-HhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            689999999999998644 23343332        2358899999999999987 99999999999999887664

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.89  E-value=2.3e-05  Score=54.74  Aligned_cols=47  Identities=30%  Similarity=0.577  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ..||..|...|+++++..-         ...|..||.++-   ..|++.||+.+|.+|+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g---------~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYG---------KDNWKKIAKRMP---GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHST---------TTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhC---------CcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence            4799999999998755311         117999999997   8999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=97.49  E-value=0.00019  Score=51.61  Aligned_cols=41  Identities=32%  Similarity=0.714  Sum_probs=32.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHH
Q 022750           19 WSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS   73 (292)
Q Consensus        19 WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~N   73 (292)
                      ||..|...|+..+...          ...|..||..|-    .|++.||+.||.+
T Consensus         1 WT~eEd~~L~~~~~~~----------g~~W~~Ia~~l~----~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKY----------GNDWKKIAEHLG----NRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHH----------TS-HHHHHHHST----TS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH----------CcCHHHHHHHHC----cCCHHHHHHHHHH
Confidence            9999999999864431          127999999984    8999999999999

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=97.42  E-value=0.00038  Score=45.90  Aligned_cols=46  Identities=30%  Similarity=0.731  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ..||..|...|+.+.+..-         ...|..||..+.    .|++.+|+.+|.++.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g---------~~~w~~Ia~~~~----~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYG---------KNNWEKIAKELP----GRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence            4799999999998654311         157999999997    999999999999875

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=97.06  E-value=0.0014  Score=42.70  Aligned_cols=44  Identities=27%  Similarity=0.705  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH
Q 022750           18 DWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (292)
Q Consensus        18 ~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL   74 (292)
                      .||..|...|+.+.+..         ....|..|+..+.    .|++.||+.+|.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~---------g~~~w~~Ia~~~~----~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKY---------GKNNWEKIAKELP----GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHH---------CcCCHHHHHhHcC----CCCHHHHHHHHHHh
Confidence            49999999999854421         1157999999996    49999999999986

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=96.71  E-value=0.0019  Score=60.80  Aligned_cols=50  Identities=24%  Similarity=0.521  Sum_probs=38.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      +...||..|--.|++.++..         ....|..||.++   |..|+++|||.||.|.+.
T Consensus        24 KRg~WT~EEDe~L~~lV~ky---------G~~nW~~IAk~~---g~gRT~KQCReRW~N~L~   73 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKKE---------GEGRWRSLPKRA---GLLRCGKSCRLRWMNYLR   73 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHHh---------CcccHHHHHHhh---hcCCCcchHHHHHHHhhc
Confidence            34569999999999754421         234799999764   578999999999998874

>PLN03091 hypothetical protein; Provisional

Probab=96.01  E-value=0.0096  Score=60.13  Aligned_cols=51  Identities=22%  Similarity=0.441  Sum_probs=38.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           13 SQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        13 ~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      +-+...||..|=-.|++++...         ....|..||..+   |..|+++|||.||.|.+
T Consensus        11 klrKg~WTpEEDe~L~~~V~ky---------G~~nWs~IAk~~---g~gRT~KQCRERW~NyL   61 (459)
T PLN03091         11 KLRKGLWSPEEDEKLLRHITKY---------GHGCWSSVPKQA---GLQRCGKSCRLRWINYL   61 (459)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHh---------CcCCHHHHhhhh---ccCcCcchHhHHHHhcc
Confidence            4455679999999999754321         224799999764   67899999999999754

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=95.87  E-value=0.046  Score=42.07  Aligned_cols=65  Identities=17%  Similarity=0.326  Sum_probs=50.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhhh---ccChHHhHHHHHHHhhh-cCCCCChhHHhHHHHHHHHHHhhhh
Q 022750           18 DWSSKEALILVNEIAAVEADCLK---ALSSYQKWKIISETCTA-LDVPRTANQCRRKWDSLLDEYKKMI   82 (292)
Q Consensus        18 ~WT~~ETLvLI~ak~ave~d~~r---s~Sa~eKW~~Vae~c~~-~Gv~Rs~~QCr~KW~NLl~dYKkIr   82 (292)
                      +||...+.+||+.....-....+   +.-...-|..|+..+.. -|..-+..||+.||..|-..|+-++
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~   69 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWK   69 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHH
Confidence            59999999999865433223333   22246779998888776 4788899999999999999999995

>PLN03212 Transcription repressor MYB5; Provisional

Probab=94.21  E-value=0.11  Score=49.24  Aligned_cols=52  Identities=17%  Similarity=0.267  Sum_probs=41.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhh
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKK   80 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKk   80 (292)
                      ....||..|-..|++..+.          -..+|..||.+|-    .|+.+||+.+|.+++..+..
T Consensus        77 ~kgpWT~EED~lLlel~~~----------~GnKWs~IAk~Lp----GRTDnqIKNRWns~LrK~l~  128 (249)
T PLN03212         77 KRGGITSDEEDLILRLHRL----------LGNRWSLIAGRIP----GRTDNEIKNYWNTHLRKKLL  128 (249)
T ss_pred             ccCCCChHHHHHHHHHHHh----------ccccHHHHHhhcC----CCCHHHHHHHHHHHHhHHHH
Confidence            4568999999988864332          2358999999996    79999999999998865533

>smart00595 MADF subfamily of SANT domain

Probab=93.77  E-value=0.1  Score=39.80  Aligned_cols=34  Identities=24%  Similarity=0.731  Sum_probs=30.8

Q ss_pred             ChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhh
Q 022750           43 SSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKM   81 (292)
Q Consensus        43 Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkI   81 (292)
                      ...+-|..|+..|..     ++.+|+.||.||-..|...
T Consensus        25 ~r~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e   58 (89)
T smart00595       25 EKRKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRE   58 (89)
T ss_pred             HHHHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHH
Confidence            357799999999965     9999999999999999888

>PLN03091 hypothetical protein; Provisional

Probab=93.66  E-value=0.15  Score=51.91  Aligned_cols=51  Identities=22%  Similarity=0.380  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhh
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKK   80 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKk   80 (292)
                      ...||..|-..||+..+.          -..+|..||.+|-    .|+.+||+.+|..++..|.+
T Consensus        67 KgpWT~EED~lLLeL~k~----------~GnKWskIAk~LP----GRTDnqIKNRWnslLKKklr  117 (459)
T PLN03091         67 RGTFSQQEENLIIELHAV----------LGNRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLR  117 (459)
T ss_pred             CCCCCHHHHHHHHHHHHH----------hCcchHHHHHhcC----CCCHHHHHHHHHHHHHHHHH
Confidence            468999999999975442          1249999999996    99999999999999987654

>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats

Probab=92.52  E-value=0.22  Score=36.65  Aligned_cols=36  Identities=19%  Similarity=0.656  Sum_probs=31.6

Q ss_pred             hHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhh
Q 022750           44 SYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMI   82 (292)
Q Consensus        44 a~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr   82 (292)
                      ..+-|..|+..|   |..-++.+|+.+|.+|...|....
T Consensus        25 r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~   60 (85)
T PF10545_consen   25 REEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRREL   60 (85)
T ss_pred             HHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHH
Confidence            688999999999   545568999999999999999884

The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=89.93  E-value=0.3  Score=44.67  Aligned_cols=49  Identities=20%  Similarity=0.473  Sum_probs=38.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      +.+.||..|=..||+-++.         -..-.|..|+..+   |..|.+++||-||-|-+
T Consensus         8 ~kGpWt~EED~~L~~~V~~---------~G~~~W~~i~k~~---gl~R~GKSCRlRW~NyL   56 (238)
T KOG0048|consen    8 VKGPWTQEEDLTQIRSIKS---------FGKHNGTALPKLA---GLRRCGKSCRLRWTNYL   56 (238)
T ss_pred             cCCCCChHHHHHHHHHHHH---------hCCCCcchhhhhc---CCCccchHHHHHhhccc
Confidence            3589999999999985442         1233899999764   66999999999999744

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=86.78  E-value=0.95  Score=46.70  Aligned_cols=49  Identities=22%  Similarity=0.575  Sum_probs=40.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH
Q 022750           12 RSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (292)
Q Consensus        12 R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL   74 (292)
                      .....++||.+||+.|+++   ++.       -.+.|.-|+.++.    .|+..||-.|-=.|
T Consensus       249 ~~~~~~~WT~qE~lLLLE~---ie~-------y~ddW~kVa~hVg----~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEA---IEM-------YGDDWNKVADHVG----TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHH---HHH-------hcccHHHHHhccC----CCCHHHHHHHHHhc
Confidence            5678899999999999985   443       4679999999998    99999998876444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	7e-10

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86

 Score = 54.0 bits (130), Expect = 7e-10
 Identities = 16/65 (24%), Positives = 26/65 (40%)

Query: 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75
             W   E   L+     ++     + S+   W+ IS         R+ + C  KW +LL
Sbjct: 4  AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63

Query: 76 DEYKK 80
           E+KK
Sbjct: 64 KEFKK 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	99.73
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.17
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.1
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.08
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.01
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	97.99
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	97.89
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	97.86
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	97.86
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	97.83
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	97.8
2cjj_A	93	Radialis; plant development, DNA-binding protein,	97.73
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	97.72
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	97.67
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	97.67
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	97.64
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	97.62
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	97.62
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	97.59
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	97.5
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	97.44
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	97.2
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	97.19
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	97.07
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	97.06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	96.11
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	97.01
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	96.97
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	96.9
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	96.79
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	96.66
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	96.41
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	96.31
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	96.11
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	96.09
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	95.59
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	94.98
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	94.24
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	92.29
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	90.4
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	87.94

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=99.73  E-value=9.8e-18  Score=128.79  Aligned_cols=70  Identities=23%  Similarity=0.393  Sum_probs=66.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhh
Q 022750           13 SQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMI   82 (292)
Q Consensus        13 ~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr   82 (292)
                      +.|.++||.+||++||+++...+..+..+.++...|+.||+.|+.+||+||+.||+.||+||...||+|+
T Consensus         1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k   70 (86)
T 2ebi_A            1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK   70 (86)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3688999999999999998888888888889999999999999999999999999999999999999996

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.17  E-value=4.4e-06  Score=61.55  Aligned_cols=52  Identities=15%  Similarity=0.280  Sum_probs=41.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCC-CCChhHHhHHHHHHHH
Q 022750           13 SQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLLD   76 (292)
Q Consensus        13 ~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv-~Rs~~QCr~KW~NLl~   76 (292)
                      +.....||..|-..|+.++...         ...+|..||.++-   + .|++.||+.+|.|++.
T Consensus         7 ~~~r~~WT~eED~~L~~~v~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            7 ARKRQAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK---FNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHH---------CSSCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHH---------CCCcHHHHHHHcC---cCCCCHHHHHHHHHHHcC
Confidence            3445689999999999864421         1238999999984   4 8999999999999985

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.10  E-value=3e-06  Score=62.53  Aligned_cols=50  Identities=20%  Similarity=0.401  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      ...||..|-..|++++...         ..-.|..||.++--  -.|++.||++||.||+.
T Consensus        11 k~~WT~eED~~L~~~V~~~---------G~~~W~~Ia~~~~~--~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           11 KQKWTVEESEWVKAGVQKY---------GEGNWAAISKNYPF--VNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSCC--SSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHcc---------CCCchHHHHhhcCC--CCCCHHHHHHHHHHHhc
Confidence            3479999999999864421         12369999987521  26999999999999974

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.08  E-value=4.5e-06  Score=58.60  Aligned_cols=48  Identities=17%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCC-CCChhHHhHHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLLD   76 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv-~Rs~~QCr~KW~NLl~   76 (292)
                      ..||..|-..|+.++...         ...+|..||.++-   + .|++.||+.+|.||+.
T Consensus         3 ~~WT~eEd~~L~~~v~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK---FNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSC---CSSCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHcC---CCCCCHHHHHHHHHHHHc
Confidence            589999999999864421         1248999999983   4 5999999999999873

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.01  E-value=7.3e-06  Score=56.97  Aligned_cols=47  Identities=26%  Similarity=0.580  Sum_probs=38.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ...||..|-..|++++...         ...+|..||.++-    .|++.||+.+|.+++
T Consensus         3 ~~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQN---------GTDDWKVIANYLP----NRTDVQCQHRWQKVL   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHH---------CSSCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence            4589999999999864421         1137999999985    799999999999987

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=1.8e-05  Score=57.65  Aligned_cols=55  Identities=25%  Similarity=0.447  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcC
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVR   84 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~   84 (292)
                      ....||..|-..|+++...        ..  .+|..||. +-  |  |++.||+.+|.+++..-.+...+
T Consensus         8 ~k~~WT~eED~~L~~~~~~--------~g--~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKL--------MP--TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHH--------CT--TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCHHHHHHHHHHHHH--------cC--CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhcCCCC
Confidence            3457999999999975332        12  28999999 54  4  99999999999999887766543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=97.89  E-value=1.5e-05  Score=57.38  Aligned_cols=47  Identities=15%  Similarity=0.623  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ...||..|-..|++++..         -...+|..||.++-    .|++.||+.+|.+.+
T Consensus         8 ~~~WT~eED~~L~~~v~~---------~G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l   54 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMD---------CGFGNWQDVANQMC----TKTKEECEKHYMKYF   54 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHH---------TCTTCHHHHHHHHT----TSCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHH---------HCcCcHHHHHHHhC----CCCHHHHHHHHHHHc
Confidence            457999999999986442         11248999999995    699999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=97.86  E-value=1.3e-05  Score=55.87  Aligned_cols=47  Identities=23%  Similarity=0.613  Sum_probs=37.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ...||..|-..|++++...         ....|..||.+|-    .|++.||+.+|.|.+
T Consensus         3 k~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHH---------CcChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence            4689999999999854421         1125999999985    799999999999875

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=97.86  E-value=2e-05  Score=56.35  Aligned_cols=48  Identities=25%  Similarity=0.511  Sum_probs=38.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ....||..|-..|++++...         ...+|..||.+|-    .|++.||+.+|.+++
T Consensus         7 ~k~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l   54 (60)
T 2d9a_A            7 GKVKWTHEEDEQLRALVRQF---------GQQDWKFLASHFP----NRTDQQCQYRWLRVL   54 (60)
T ss_dssp             CCSCCCHHHHHHHHHHHHHT---------CTTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence            34589999999999854421         1247999999985    699999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=97.83  E-value=3.1e-05  Score=55.60  Aligned_cols=47  Identities=21%  Similarity=0.518  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ..||..|-..|++++..         -....|..||.++-   -.|++.||+.+|.|+.
T Consensus        10 ~~WT~eED~~L~~~v~~---------~G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A           10 ENWGADEELLLIDACET---------LGLGNWADIADYVG---NARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCHHHHHHHHHHHHH---------TTTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHH---------HCcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence            46999999999986442         12258999999983   3799999999999864

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=97.80  E-value=3.5e-05  Score=59.09  Aligned_cols=50  Identities=24%  Similarity=0.602  Sum_probs=40.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH
Q 022750           11 TRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (292)
Q Consensus        11 ~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL   74 (292)
                      ........||..|.+.|++++..        ..  ..|..||.++-    .|++.||+.+|.+|
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~--------~G--~~W~~IA~~v~----~RT~~qcr~r~~~~   62 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEM--------YK--DDWNKVSEHVG----SRTQDECILHFLRL   62 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHH--------SS--SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred             cccccCCCcCHHHHHHHHHHHHH--------hC--CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence            33344679999999999986442        11  58999999985    79999999999887

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=97.73  E-value=8.5e-05  Score=58.86  Aligned_cols=59  Identities=19%  Similarity=0.433  Sum_probs=47.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcC
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVR   84 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~   84 (292)
                      ...||..|-..|+++.+.    +  ......+|..||.++-    .|+.+||+.+|.+|+.+.+.|+.|
T Consensus         8 ~~~WT~eEd~~L~~al~~----~--~~~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~iesg   66 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAV----Y--DKDTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESG   66 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHH----S--CTTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHH----c--CCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhcC
Confidence            457999999999986442    1  1123479999999996    699999999999999999888744

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=97.72  E-value=5.5e-05  Score=61.31  Aligned_cols=93  Identities=15%  Similarity=0.246  Sum_probs=58.7

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcC
Q 022750            5 SSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVR   84 (292)
Q Consensus         5 ~~~s~r~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~   84 (292)
                      ++.+...++.....||..|...|++++...         ..-+|..|+..+...=-.|+..||++||.||+..-      
T Consensus         2 s~~~~~~~rr~r~~WT~EEd~~L~~gV~k~---------G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~------   66 (105)
T 2aje_A            2 SHMLEDPQRRIRRPFSVAEVEALVQAVEKL---------GTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA------   66 (105)
T ss_dssp             -------CCCCCCSCCHHHHHHHHHHHHHH---------CSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT------
T ss_pred             CCCccccCCCCCCCCCHHHHHHHHHHHHHh---------CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc------
Confidence            344555566666799999999999865421         12389999985421113899999999999998621      


Q ss_pred             CCCCCCCChhchhhc-CCCCCcHHHHHHHHHHhhh
Q 022750           85 SRTFPNSQTQTHTDC-FPPNFDSELFKAIHDFVMS  118 (292)
Q Consensus        85 ~~SYW~Ms~~eRke~-LP~~FD~EVFdALd~f~~~  118 (292)
                           .+++..|+.. +|..|-.-|-+ |+++.+.
T Consensus        67 -----~~~p~~~rg~~~P~~~l~rv~~-~~~~~~~   95 (105)
T 2aje_A           67 -----KISPQQRRGEPVPQELLNRVLN-AHGYWTQ   95 (105)
T ss_dssp             -----TCCTTTTTCCSCCCHHHHHHHH-HHHHHHH
T ss_pred             -----cCCcccccCCCCCHHHHHHHHH-HHHHHHH
Confidence                 1233345566 88887776665 4555443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.67  E-value=7.1e-05  Score=56.90  Aligned_cols=52  Identities=13%  Similarity=0.367  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE   77 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d   77 (292)
                      ...||..|-..|+++++..      ......+|..||.++-    .|+..||+.+|.+|+.|
T Consensus        18 ~~~WT~eEd~~L~~al~~~------g~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           18 EEPWTQNQQKLLELALQQY------PRGSSDCWDKIARCVP----SKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             SCCCCHHHHHHHHHHHHHS------CSSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHc------CCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHHc
Confidence            3569999999999865421      1224679999999996    79999999999999865

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=4.5e-05  Score=56.14  Aligned_cols=48  Identities=25%  Similarity=0.529  Sum_probs=38.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      +...||..|-..|+.++..   -      ...+|..||.+|-    .|++.||+.+|.|.+
T Consensus         8 k~~~Wt~eED~~L~~~v~~---~------G~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L   55 (70)
T 2dim_A            8 KGGVWRNTEDEILKAAVMK---Y------GKNQWSRIASLLH----RKSAKQCKARWYEWL   55 (70)
T ss_dssp             TTCCCCHHHHHHHHHHHHH---T------CSSCHHHHHHHST----TCCHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHHH---H------CcCCHHHHHHHhc----CCCHHHHHHHHHHHc
Confidence            4468999999999985442   1      1248999999986    799999999999865

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.64  E-value=0.00017  Score=53.63  Aligned_cols=54  Identities=17%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE   77 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d   77 (292)
                      ...||..|-..|++++..    +....+...+|..||.++-    .|++.||+.+|.+++..
T Consensus         8 ~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG----NRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred             CCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence            458999999999985432    1112234579999999996    79999999999887754

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=97.62  E-value=0.0002  Score=59.43  Aligned_cols=58  Identities=17%  Similarity=0.328  Sum_probs=44.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750           11 TRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE   77 (292)
Q Consensus        11 ~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d   77 (292)
                      ..+.....||..|...|++++...         ..-+|..|+..+...--.|+..||++||.||+..
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~---------G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHH---------GGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            344455689999999999865431         2248999999975433489999999999999964

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.62  E-value=0.00013  Score=54.05  Aligned_cols=51  Identities=18%  Similarity=0.301  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHh
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYK   79 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYK   79 (292)
                      ....||..|-..|++++..        ...  +|..||.++-    .|+..||+.+|.+++....
T Consensus         8 ~~~~WT~eEd~~l~~~~~~--------~G~--~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~~~   58 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAK--------FGR--RWTKISKLIG----SRTVLQVKSYARQYFKNKV   58 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHH--------TCS--CHHHHHHHHS----SSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHH--------HCc--CHHHHHHHcC----CCCHHHHHHHHHHHHHHHH
Confidence            3458999999999985443        112  8999999986    7999999999999976543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=97.59  E-value=0.00017  Score=59.87  Aligned_cols=89  Identities=12%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcCCCCCCC
Q 022750           11 TRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPN   90 (292)
Q Consensus        11 ~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~~~SYW~   90 (292)
                      .++.....||..|...|++++...         ..-+|..|+......=-.|+..||++||.||+..- .+         
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~---------G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~-~~---------   86 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHL---------GTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA-SI---------   86 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHH---------SSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH-HS---------
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH---------CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-cC---------
Confidence            344456689999999999865421         12389999997542114899999999999998532 11         


Q ss_pred             CChhchhhc-CCCCCcHHHHHHHHHHhhhcC
Q 022750           91 SQTQTHTDC-FPPNFDSELFKAIHDFVMSKD  120 (292)
Q Consensus        91 Ms~~eRke~-LP~~FD~EVFdALd~f~~~r~  120 (292)
                       ++..|+.. .|..|+.-|.. ++.+++-+.
T Consensus        87 -~p~~kr~~~~p~e~~~~v~~-~h~~~g~~~  115 (122)
T 2roh_A           87 -APQQRRGAPVPQELLDRVLA-AQAYWSVDS  115 (122)
T ss_dssp             -CTTTCCCSSCCHHHHHHHHH-HHHHHHSSC
T ss_pred             -CccccCCCCCCHHHHHHHHH-HHHHHhhHH
Confidence             11122333 56555555553 555555444

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=97.50  E-value=0.00022  Score=55.36  Aligned_cols=74  Identities=18%  Similarity=0.300  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcCCCCCCCCChhchh
Q 022750           18 DWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHT   97 (292)
Q Consensus        18 ~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~~~SYW~Ms~~eRk   97 (292)
                      .||..|...|+.++...         ..-+|..|+..-...=-.|+..||++||.||+..- .+          ++..|+
T Consensus         2 ~WT~eEd~~L~~gv~k~---------G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~-~~----------~p~~~~   61 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA-SI----------APQQRR   61 (83)
T ss_dssp             CCCHHHHHHHHHHHHHH---------CSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH-HS----------CGGGCC
T ss_pred             CCCHHHHHHHHHHHHHH---------CCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc-cC----------Cccccc
Confidence            69999999999864421         12389999986211113899999999999998632 22          333344


Q ss_pred             hc-CCCCCcHHHHHH
Q 022750           98 DC-FPPNFDSELFKA  111 (292)
Q Consensus        98 e~-LP~~FD~EVFdA  111 (292)
                      .. +|..|..-|-++
T Consensus        62 ~~~~p~~~~~rv~~~   76 (83)
T 2ckx_A           62 GEPVPQDLLDRVLAA   76 (83)
T ss_dssp             SSCCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence            55 887776666433

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.44  E-value=0.00049  Score=52.04  Aligned_cols=58  Identities=16%  Similarity=0.291  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcC
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVR   84 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~   84 (292)
                      ..+.||..|-..|+++.+.    +..  ....+|..||+++   |  |++.||+.+|..|..+. .|..|
T Consensus         7 ~~~~WT~eE~k~fe~al~~----~p~--~t~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d~-~~~~G   64 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVK----FPG--GTPGRWEKIAHEL---G--RSVTDVTTKAKQLKDSV-TCSPG   64 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHH----SCT--TCTTHHHHHHHHH---T--SCHHHHHHHHHHHHHSC-CCCSC
T ss_pred             CCCCCCHHHHHHHHHHHHH----CCC--CCCcHHHHHHHHh---C--CCHHHHHHHHHHHHHhc-CccCC
Confidence            3568999999999986552    111  1247999999997   4  99999999999999884 45433

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=97.20  E-value=0.00043  Score=52.62  Aligned_cols=46  Identities=13%  Similarity=0.145  Sum_probs=37.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ....||..|-..|+++...          -..+|..||.+|     .|+..||+.+|..|.
T Consensus        22 ~k~~wT~EED~~L~~l~~~----------~G~kW~~IA~~l-----gRt~~q~knRw~~L~   67 (73)
T 2llk_A           22 HVGKYTPEEIEKLKELRIK----------HGNDWATIGAAL-----GRSASSVKDRCRLMK   67 (73)
T ss_dssp             CCCSSCHHHHHHHHHHHHH----------HSSCHHHHHHHH-----TSCHHHHHHHHHHCS
T ss_pred             CCCCCCHHHHHHHHHHHHH----------HCCCHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            3458999999999985443          123599999998     699999999998774

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=97.19  E-value=0.00041  Score=56.16  Aligned_cols=50  Identities=28%  Similarity=0.568  Sum_probs=39.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           13 SQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        13 ~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      ..+...||..|-..|+.++...          ...|..||.+|-    .|++.||+.+|.|.+.
T Consensus         8 ~~kk~~WT~eED~~L~~~v~~~----------G~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~   57 (126)
T 3osg_A            8 AAKKQKFTPEEDEMLKRAVAQH----------GSDWKMIAATFP----NRNARQCRDRWKNYLA   57 (126)
T ss_dssp             BCSSCCCCHHHHHHHHHHHHHH----------TTCHHHHHHTCT----TCCHHHHHHHHHHHTS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHhhhcc
Confidence            3445689999999999864431          127999999875    7999999999998763

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=97.07  E-value=0.001  Score=52.36  Aligned_cols=51  Identities=25%  Similarity=0.447  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHh
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYK   79 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYK   79 (292)
                      ....||..|-..|+.++..        .  ..+|..||.+|-    .|+.+||+.+|.+|+..-.
T Consensus        52 ~~~~WT~eEd~~L~~~~~~--------~--G~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~~~  102 (107)
T 2k9n_A           52 RTDPWSPEEDMLLDQKYAE--------Y--GPKWNKISKFLK----NRSDNNIRNRWMMIARHRA  102 (107)
T ss_dssp             TTCCCCHHHHHHHHHHHHH--------T--CSCHHHHHHHHS----SSCHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHH--------h--CcCHHHHHHHCC----CCCHHHHHHHHHHHHhhHH
Confidence            3468999999999985442        1  138999999985    7999999999999987643

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=97.06  E-value=0.00061  Score=53.63  Aligned_cols=46  Identities=24%  Similarity=0.541  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ..||..|-..|+.++...         ....|..||.+|-    .|++.||+.+|.|.+
T Consensus         2 ~~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRY---------GAKDWIRISQLMI----TRNPRQCRERWNNYI   47 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHH---------CSSCHHHHHHHTT----TSCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHH---------CCCCHHHHhhhcC----CCCHHHHHHHHHHHH
Confidence            479999999999854421         1137999999986    799999999999865

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=96.11  E-value=9e-05  Score=57.53  Aligned_cols=53  Identities=13%  Similarity=0.246  Sum_probs=41.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHH
Q 022750           12 RSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEY   78 (292)
Q Consensus        12 R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dY   78 (292)
                      ..-....||..|-..|++++..        .  ..+|..||.+|-    .|+..||+.+|.+++..+
T Consensus        12 p~~~~~~WT~eEd~~l~~~~~~--------~--G~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           12 ENLYFQGWTEEEMGTAKKGLLE--------H--GRNWSAIARMVG----SKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            3344568999999999985443        1  237999999986    799999999999887654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=97.01  E-value=0.00034  Score=54.49  Aligned_cols=47  Identities=21%  Similarity=0.597  Sum_probs=37.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ...||..|-..|+.++...         ....|..||.+|-    .|++.||+.+|.|.+
T Consensus         4 k~~WT~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL   50 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHh---------CCCcHHHHhhhhc----CCCHHHHHHHHHhcc
Confidence            4579999999999854321         1136999999885    799999999999864

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=96.97  E-value=0.00078  Score=54.53  Aligned_cols=49  Identities=22%  Similarity=0.533  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEY   78 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dY   78 (292)
                      ...||..|-..|++++...          ..+|..||.++-    .|+..||+.+|.+|+..+
T Consensus        62 ~~~WT~eEd~~L~~~v~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           62 HTPWTAEEDALLVQKIQEY----------GRQWAIIAKFFP----GRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CSCCCHHHHHHHHHHHHHH----------CSCHHHHHTTST----TCCHHHHHHHHHHHHHHT
T ss_pred             cccCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHHhc
Confidence            4579999999999864432          136999999875    799999999999998654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=96.90  E-value=0.00079  Score=52.38  Aligned_cols=48  Identities=21%  Similarity=0.461  Sum_probs=38.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      ....||..|-..|+.+....          ..+|..||.++-    .|++.||+.+|.+|+.
T Consensus        55 ~~~~Wt~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~~~~  102 (105)
T 1gv2_A           55 KKTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAIKNHWNSTMR  102 (105)
T ss_dssp             CCCCCCHHHHHHHHHHHHHH----------SSCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred             cccCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence            34689999999999864431          137999998874    7999999999998864

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=96.79  E-value=0.001  Score=53.60  Aligned_cols=47  Identities=21%  Similarity=0.560  Sum_probs=37.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ...||..|-..|+.++..   -      ....|..||.+|-    .|++.||+.+|.|.+
T Consensus        27 k~~Wt~eED~~L~~~v~~---~------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           27 KGPWTKEEDQRVIEHVQK---Y------GPKRWSDIAKHLK----GRIGKQCRERWHNHL   73 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHH---T------CSCCHHHHHHHSS----SCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHH---H------CCCCHHHHHHHhc----CCcHHHHHHHHHHhc
Confidence            457999999999975432   1      1136999999985    799999999999865

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=96.66  E-value=0.0011  Score=53.98  Aligned_cols=48  Identities=21%  Similarity=0.485  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE   77 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d   77 (292)
                      ...||..|-..|+.++..          -..+|..||.+|-    .|+..||+.+|.+++..
T Consensus        54 ~~~Wt~eEd~~L~~~~~~----------~G~~W~~Ia~~l~----gRt~~~~k~rw~~~l~~  101 (131)
T 3zqc_A           54 KHAWTPEEDETIFRNYLK----------LGSKWSVIAKLIP----GRTDNAIKNRWNSSISK  101 (131)
T ss_dssp             CSCCCHHHHHHHHHHHHH----------SCSCHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred             CCCCCHHHHHHHHHHHHH----------HCcCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            457999999999975432          1136999999875    79999999999998753

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=96.41  E-value=0.00061  Score=55.42  Aligned_cols=48  Identities=23%  Similarity=0.439  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      .+.||..|-..|+.++...         ....|..||.+|-    .|++.||+.+|.|.+.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~   49 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKEN---------GPQNWPRITSFLP----NRSPKQCRERWFNHLD   49 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHH---------CSCCGGGGTTSCT----TSCHHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHHHHh---------CcCCHHHHHHHHC----CCCHHHHHHHHhhccC
Confidence            3579999999999754421         1236999999884    7999999999998763

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=96.31  E-value=0.0021  Score=51.85  Aligned_cols=48  Identities=21%  Similarity=0.469  Sum_probs=38.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      ....||..|-..|+.+....          ..+|..||.++-    .|+..||+.+|.+|+.
T Consensus        78 ~~~~WT~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~r~~~~~~  125 (128)
T 1h8a_C           78 KKTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAVKNHWNSTMR  125 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHH----------CSCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred             ccccCCHHHHHHHHHHHHHH----------CcCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence            34679999999999864431          137999999875    7999999999998863

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.11  E-value=0.017  Score=41.63  Aligned_cols=53  Identities=17%  Similarity=0.293  Sum_probs=40.9

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHH
Q 022750            6 SGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS   73 (292)
Q Consensus         6 ~~s~r~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~N   73 (292)
                      +++.+.| +....||..|...|+++.+.        .  .-.|..||.++-    .|+..||...|..
T Consensus         3 ~~~~~~r-~~~~~WT~eE~~~F~~~~~~--------~--gk~w~~Ia~~l~----~rt~~~~v~~Yy~   55 (61)
T 2eqr_A            3 SGSSGDR-QFMNVWTDHEKEIFKDKFIQ--------H--PKNFGLIASYLE----RKSVPDCVLYYYL   55 (61)
T ss_dssp             CSCCCCC-SCCCSCCHHHHHHHHHHHHH--------S--TTCHHHHHHHCT----TSCHHHHHHHHHH
T ss_pred             Ccccccc-ccCCCCCHHHHHHHHHHHHH--------h--CCCHHHHHHHcC----CCCHHHHHHHHHH
Confidence            3344444 56789999999999987653        1  237999998886    7999999998864

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=96.09  E-value=0.0049  Score=51.24  Aligned_cols=48  Identities=21%  Similarity=0.606  Sum_probs=37.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ....||..|-..|+.++...         ....|..||.+|-    .|++.||+.+|.|++
T Consensus        57 ~~~~Wt~eEd~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           57 IKGPWTKEEDQRVIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL  104 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHH---------CSCCHHHHHHTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCCChHHHHHHHHHHHHh---------CcccHHHHHHHcC----CCCHHHHHHHHHHHh
Confidence            34689999999999754321         0135999999985    799999999999865

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=95.59  E-value=0.0071  Score=50.29  Aligned_cols=48  Identities=21%  Similarity=0.461  Sum_probs=38.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      ....||..|-..|+++....          ..+|..||.++-    .|+.+||+.+|..|+.
T Consensus       109 ~~~~WT~eEd~~L~~~~~~~----------g~~W~~Ia~~l~----gRt~~~~knr~~~~~r  156 (159)
T 1h89_C          109 KKTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAIKNHWNSTMR  156 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHH----------CSCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred             cccCCChHHHHHHHHHHHHH----------CCCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence            45689999999999865431          248999999875    7999999999998763

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=94.98  E-value=0.041  Score=42.00  Aligned_cols=51  Identities=20%  Similarity=0.363  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      ...||..|-..|.+|.+..    .  .....+|..||+.+-    .|++.+|+.+|..|..
T Consensus         8 ~~~WT~eE~k~fe~ALa~~----~--~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASL----P--KHKPGFWSEVAAAVG----SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHS----C--SSSSSHHHHHHHHTT----TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHC----C--CCCccHHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence            3589999999999875531    1  124579999999986    5999999999988743

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=94.24  E-value=0.03  Score=51.55  Aligned_cols=53  Identities=13%  Similarity=0.230  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE   77 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d   77 (292)
                      ..||..|=..|+++++   . ..........|..||.+|-    .|+.+||+.+|.+++..
T Consensus         9 ~~FT~EED~~Ile~v~---k-~Gn~r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~~   61 (246)
T 1ign_A            9 ASFTDEEDEFILDVVR---K-NPTRRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLSK   61 (246)
T ss_dssp             CCCCHHHHHHHHHHHH---T-SGGGTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTGG
T ss_pred             CCCCHHHHHHHHHHHH---H-hCcCccccccHHHHHHHcC----CCCHHHHHHHHHHHHhh
Confidence            4899999999997433   2 2111123345999999988    89999999999997743

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=92.29  E-value=0.18  Score=37.55  Aligned_cols=51  Identities=18%  Similarity=0.291  Sum_probs=38.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      ....||..|.-.|++.+..        ..  .+|..|+..-.- =..|+...-++||.||+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k--------~G--~~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKT--------MG--NHWNSILWSFPF-QKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHH--------HC--SCHHHHHHHSCC-CTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHH--------Hh--HhHHHHHHhCCC-ccCcccchHHHHHHHHHh
Confidence            3458999999999987553        12  289999964321 229999999999999974

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=90.40  E-value=0.46  Score=43.46  Aligned_cols=46  Identities=17%  Similarity=0.360  Sum_probs=36.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHH
Q 022750           14 QVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS   73 (292)
Q Consensus        14 ~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~N   73 (292)
                      .....||..|.+.|+++.+..          .-.|..||..+-    .|+..||+.-|.+
T Consensus       131 k~s~~WTeEE~~lFleAl~kY----------GKDW~~IAk~Vg----TKT~~QcKnfY~~  176 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKY----------GRDFQAISDVIG----NKSVVQVKNFFVN  176 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHH----------SSCHHHHHHHHS----SCCHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHH
Confidence            345699999999999865531          124999999986    8999999998863

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=87.94  E-value=1.3  Score=35.08  Aligned_cols=57  Identities=9%  Similarity=0.182  Sum_probs=47.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcC-CCCChhHHhHHHHHHHHHHhhhhc
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALD-VPRTANQCRRKWDSLLDEYKKMIV   83 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~G-v~Rs~~QCr~KW~NLl~dYKkIr~   83 (292)
                      +.||..||.-|++..+.          =..+|-.|++..--.+ ..||..+-+.++..++....+.++
T Consensus        31 ~~WTkEETd~Lf~L~~~----------fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRR----------FDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             TTBCHHHHHHHHHHHHH----------TTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHH----------hCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            79999999999985443          2458999999997665 379999999999999998887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	98.35
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.12
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	97.96
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	97.9
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	97.81
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.8
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.72
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.71
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	97.37
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.28
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	96.9
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	96.71
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	96.45
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	95.31
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	94.94

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.35  E-value=6.8e-07  Score=63.69  Aligned_cols=59  Identities=17%  Similarity=0.393  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcCC
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRS   85 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~~   85 (292)
                      ..||..|-..|++++...      ......+|..||.++-    .|++.||+.+|..|+.+.|.|+.|.
T Consensus         2 ~~WT~eEd~~L~~~v~~~------~~~~~~~W~~Ia~~l~----gRt~~qc~~r~~~L~~dik~iesg~   60 (63)
T d2cjja1           2 RPWSAKENKAFERALAVY------DKDTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESGK   60 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHS------CTTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             cCCCHHHHHHHHHHHHHH------CCCCchHHHHHHHHcC----CCCHHHHHHHHHHHHHHhhccccCC
Confidence            469999999999864421      1223468999999998    7999999999999999999998664

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.5e-06  Score=59.06  Aligned_cols=45  Identities=16%  Similarity=0.635  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL   74 (292)
                      |+||..|-..|++++..         -....|..||.++.    .|++.||+.+|.|-
T Consensus         2 ~~Wt~eEd~~L~~~v~~---------~G~~nW~~Ia~~~~----~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMD---------CGFGNWQDVANQMC----TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHH---------TCTTCHHHHHHHHT----TSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHH---------HCCccHHHHHHHcC----CCCHHHHHHHHHHh
Confidence            78999999999986442         12336999999997    79999999999873

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.96  E-value=5.1e-06  Score=62.12  Aligned_cols=50  Identities=20%  Similarity=0.344  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           18 DWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        18 ~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      .||..|...|+.++...         ..-.|..|+..+-..+-.|++.||++||.||+.
T Consensus         2 ~WT~eEd~~L~~~V~~~---------G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCHHHHHHHHHHHHHH---------CSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH---------CcccHHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            59999999999854321         112699999988777789999999999999984

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1e-05  Score=55.79  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ..||..|...|++++...         ....|..|+....  ..+|++.||++||.||.
T Consensus         3 ~~WT~eED~~L~~~v~~~---------G~~~W~~I~~~~~--~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK--FNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSC--CSSCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH---------CCCCHHHHHhhcC--CCCCCHHHHHHHHHHHH
Confidence            479999999999865431         1237999997642  24799999999999985

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.1e-05  Score=56.16  Aligned_cols=49  Identities=20%  Similarity=0.417  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      ..||..|-..|+.+++..         ..-.|..|+....-  -.|++.||++||.||+.
T Consensus         3 ~~WT~eEd~~L~~~V~~~---------G~~~W~~I~~~~~~--~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKY---------GEGNWAAISKNYPF--VNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSCC--SSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh---------CCChHHHHHhhcCC--CCcCHHHHHHHHHHHhc
Confidence            379999999999865421         12269999976431  26999999999999864

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=7.9e-06  Score=55.74  Aligned_cols=46  Identities=26%  Similarity=0.601  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ..||..|-..|++++...         ....|..||.+|-    .|++.||+.+|.|.+
T Consensus         2 ~~WT~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQN---------GTDDWKVIANYLP----NRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHH---------CSSCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHC----CCCHHHHHHHHHhhC
Confidence            469999999999854421         1126999999986    799999999999976

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=8e-06  Score=56.37  Aligned_cols=46  Identities=24%  Similarity=0.634  Sum_probs=37.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      +.||..|-..|++++...         ....|..||.+|-    .|++.||+.+|.|.+
T Consensus         4 g~WT~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           4 GPWTKEEDQRLIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHC----CCCHHHHHHHHHhhC
Confidence            469999999999864431         1236999999985    899999999999854

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.7e-05  Score=53.82  Aligned_cols=48  Identities=15%  Similarity=0.386  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL   74 (292)
                      ..||..|-..|++++..      .......+|..||.++-    .|++.||+.+|.-|
T Consensus        13 ~~WT~eEd~~L~~~v~~------~~~~~~~~W~~IA~~l~----~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          13 EPWTQNQQKLLELALQQ------YPRGSSDCWDKIARCVP----SKSKEDCIARYKLL   60 (60)
T ss_dssp             CCCCHHHHHHHHHHHHH------SCSSSHHHHHHHGGGCS----SSCHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH------cCCccchHHHHHHHHcC----CCCHHHHHHHHHHC
Confidence            46999999999986542      11233568999999886    79999999999876

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00016  Score=50.72  Aligned_cols=47  Identities=19%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE   77 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d   77 (292)
                      ..||..|-..|++++..        .  ...|..||.++-    .||+.||+.+|.+++..
T Consensus         3 ~~WT~eEd~~l~~~~~~--------~--G~~W~~Ia~~~~----~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAK--------F--GRRWTKISKLIG----SRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCHHHHHHHHHHHHH--------T--CSCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH--------h--cchHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            47999999999986543        1  238999999986    79999999999987654

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.00011  Score=49.65  Aligned_cols=45  Identities=22%  Similarity=0.486  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ..||..|-..|+..+..          -..+|..||.++-    .|+.+||+-+|.+++
T Consensus         2 ~~WT~eED~~L~~~v~~----------~G~~W~~Ia~~~~----gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKR----------LGNRWAEIAKLLP----GRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHH----------HSSCHHHHHTTCT----TCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHH----------HhhHHHHHHhHcC----CCCHHHHHHHHHHHc
Confidence            47999999999986543          2248999999986    899999999999885

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00034  Score=52.66  Aligned_cols=52  Identities=13%  Similarity=0.252  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      ..||..|--.|++.+.   .- .........|..||.+|-    .|++.||+.+|.|.+.
T Consensus         2 ~~WT~eED~~L~~~v~---~~-g~~~~~~~~W~~IA~~lp----gRt~~qcr~Rw~~~L~   53 (86)
T d1igna1           2 ASFTDEEDEFILDVVR---KN-PTRRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLS   53 (86)
T ss_dssp             CCCCHHHHHHHHHHHH---TS-GGGTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTG
T ss_pred             CCCCHHHHHHHHHHHH---Hh-CcCcCCccCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence            4799999999996432   21 111223456999999986    7999999999998553

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.0023  Score=49.47  Aligned_cols=59  Identities=8%  Similarity=0.216  Sum_probs=48.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhh
Q 022750           12 RSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKM   81 (292)
Q Consensus        12 R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkI   81 (292)
                      ......-||+.|=.+|+...+.       ..+....|..|+..|.    +|+++||+.||..|+.-|.+-
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~-------~G~~~~tw~~Ia~~L~----~Rs~~qvr~Rf~~Lm~lf~~~   87 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQE-------QGAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTA   87 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHH-------TTSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCccCCcCHHHHHHHHHHHHH-------cCCcHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHh
Confidence            3445667999999999975432       2234667999999999    999999999999999999875

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0014  Score=45.89  Aligned_cols=47  Identities=17%  Similarity=0.324  Sum_probs=38.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD   76 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~   76 (292)
                      .+.||..|...|+.+....          ...|..||.++.    +||+.||+.+|.++..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~----------G~~w~~Ia~~~~----~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKY----------GRDFQAISDVIG----NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHH----------SSCHHHHHHHHS----SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHh----------CchHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence            4679999999999864431          125999999997    7999999999987643

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0053  Score=43.31  Aligned_cols=49  Identities=16%  Similarity=0.226  Sum_probs=38.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH
Q 022750           12 RSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (292)
Q Consensus        12 R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL   74 (292)
                      .+.....||..|...|+.+++.          -...|..||.++-    .|+..||+..|.+.
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~----------~G~~w~~Ia~~~~----~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQ----------HPKNFGLIASFLE----RKTVAECVLYYYLT   61 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHH----------TTSCSSSHHHHTT----TSCHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHH----------HCCcHHHHHHHcC----CCCHHHHHHHHHHH
Confidence            3444557999999999986553          1136999999986    89999999999753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.032  Score=39.26  Aligned_cols=49  Identities=16%  Similarity=0.377  Sum_probs=37.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750           16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL   75 (292)
Q Consensus        16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl   75 (292)
                      ++.||..|-..|.+|.+.    +..  ....+|..||+++   |  |+..||-.+-..|.
T Consensus         1 a~eWT~ee~~~le~Al~~----~P~--gt~~RW~~IA~~v---g--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           1 APEWTEEDLSQLTRSMVK----FPG--GTPGRWEKIAHEL---G--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHH----SCT--TCTTHHHHHHHHH---T--SCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH----CCC--CCcHHHHHHHHHH---C--CCHHHHHHHHHHHH
Confidence            578999999999986442    111  3458999999998   3  99999987765554