Citrus Sinensis ID: 022760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MEENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHcccEEEccccccccEEEEccccccccEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccEEEEEEcccEEEccccccEEHcccEEEccccccc
Coil and Loop (DISEMBL)
meennyfdfsfqtqtrpssnsvsvQEESVkrqqepwnfnkptkesdfstenpgvksefapmesfssdmasyqtnvqsnaapqsgnyghynqssaytreqkrsedgynwrkygqkqvkgsenprsyfkctfpdcpmkkkversldGQITEIVYkgshnhpkptstrrssssqsmqhstcansdlsdqsvgplgnthtdsfsmqnesstsfgeddfveqgsptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrwrKYGQKVVKGNPNPR
Flexible Loop (DISEMBL)
meennyfdfsfqtqtrpssnsVSVQEESvkrqqepwnfnkptkesdfstenpgVKSEFAPMESFSSDMASYQTNVQSNAapqsgnyghynqssaYTREQKRSEDGYNWRKYgqkqvkgsenprsyfKCTFPDCPMKKKVERSLDGQITEIvykgshnhpkptstrrssssqsMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrwrkygqkvvkgnpnpr
Low Complexity Region (SEG)
MEENNYFDFSFQTQTRPssnsvsvqeesvKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPtstrrssssqsmqhstCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR
Disordered region (IsUnstruct)
****************************************************************************************************************************YFKCTFPDCPM*********GQITEIVY********************************************************************************************EGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKV********
Disordered Region (DISOPRED)
******F*************************************************************************************************GYNWRKYGQK****SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVI********************DILDDGYRWRKYGQ**********
Disordered Region (DISEMBL)
MEENNYFDFSF**********************EPWNFNKPT**********GVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYG********NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSH*************************DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQK*********
Disordered Region (DISPRO)
****************************************************************************************YNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSH**************************************************************************************************VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
Q8S8P5	519	Probable WRKY transcripti	yes	no	0.691	0.389	0.677	1e-66
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.636	0.362	0.520	2e-50
Q9C5T3	309	Probable WRKY transcripti	no	no	0.479	0.453	0.561	3e-49
Q9XI90	514	Probable WRKY transcripti	no	no	0.643	0.365	0.497	1e-47
O22921	393	Probable WRKY transcripti	no	no	0.856	0.636	0.432	1e-45
Q93WV0	557	Probable WRKY transcripti	no	no	0.643	0.337	0.476	1e-43
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.623	0.096	0.475	3e-42
O65590	568	Probable WRKY transcripti	no	no	0.640	0.329	0.477	5e-42
Q93WU7	423	Probable WRKY transcripti	no	no	0.558	0.385	0.481	2e-37
Q9SI37	487	WRKY transcription factor	no	no	0.753	0.451	0.394	6e-33

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 145/214 (67%), Positives = 164/214 (76%), Gaps = 12/214 (5%)

Query: 90  NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 148
           NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct: 170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query: 149 EIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDL-------SDQSVGPLGNTHTDSFSM 201
           EIVYKGSHNHPKP STRRSSSS S  HS   N+ L       SDQ         +DSF M
Sbjct: 230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query: 202 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 258
           Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct: 290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR
Sbjct: 349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 382

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 132/196 (67%), Gaps = 10/196 (5%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K ++DGYNWRKYGQKQVKGS+ PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 247 KPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHE 306

Query: 160 KPTSTRRSSSSQSMQHSTCANSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVE 216
            P   +R +++ S     C +SD+++Q   S   L  +  D  + Q  ++    E    E
Sbjct: 307 LP--QKRGNNNGS-----CKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSE 359

Query: 217 QGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYR 276
           +       +G+  E+EPD KR   E  +   + +  RTV EPRI+VQTTS++D+LDDGYR
Sbjct: 360 EVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYR 419

Query: 277 WRKYGQKVVKGNPNPR 292
           WRKYGQKVVKGNP PR
Sbjct: 420 WRKYGQKVVKGNPYPR 435

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 122/194 (62%), Gaps = 54/194 (27%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNH 158
           K S+DGYNWRKYGQKQVKGSENPRSYFKCT+P+C  KKKVE SL  GQ+ EIVYKGSHNH
Sbjct: 114 KTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNH 173

Query: 159 PKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQG 218
           PKP ST+RSSS+    H   +N D                           G+D      
Sbjct: 174 PKPQSTKRSSSTAIAAHQNSSNGD---------------------------GKD------ 200

Query: 219 SPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWR 278
                 IG+D   E +AKRWK E +           V+EPR+VVQTTSDIDILDDGYRWR
Sbjct: 201 ------IGED---ETEAKRWKREEN-----------VKEPRVVVQTTSDIDILDDGYRWR 240

Query: 279 KYGQKVVKGNPNPR 292
           KYGQKVVKGNPNPR
Sbjct: 241 KYGQKVVKGNPNPR 254

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 21/209 (10%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K ++DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 226 KPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHE 285

Query: 160 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 219
            P +T+R +   +   +  + ++    S   LG +    F   + + T   + + V Q +
Sbjct: 286 PPQNTKRGNKDNTANINGSSINNNRGSSE--LGASQ---FQTNSSNKTKREQHEAVSQAT 340

Query: 220 PTSNP---------------IGDDDENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQ 263
            T +                + + DENEPD KR   E  I E       RTV EPRI+VQ
Sbjct: 341 TTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQ 400

Query: 264 TTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           TTS++D+LDDGYRWRKYGQKVVKGNP PR
Sbjct: 401 TTSEVDLLDDGYRWRKYGQKVVKGNPYPR 429

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/289 (43%), Positives = 159/289 (55%), Gaps = 39/289 (13%)

Query: 4   NNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMES 63
           NN+ DF +Q Q++PS+ S ++QE                    +  ++   K E  P E 
Sbjct: 99  NNHSDFPWQLQSQPSNASSALQET-------------------YGVQDHEKKQEMIPNE- 138

Query: 64  FSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPR 123
                 + Q N QS    +      Y  S       + S DGY WRKYGQKQVK SENPR
Sbjct: 139 -----IATQNNNQSFGTERQIKIPAYMVS-------RNSNDGYGWRKYGQKQVKKSENPR 186

Query: 124 SYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDL 183
           SYFKCT+PDC  KK VE + DGQITEI+YKG HNHPKP  T+R S S S+  S       
Sbjct: 187 SYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKPEFTKRPSQS-SLPSSVNGRRLF 245

Query: 184 SDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGEND 243
           +  SV  +   H  S      SS SF   D  ++   +     D++E +P+ KR K E +
Sbjct: 246 NPASV--VSEPHDQS----ENSSISFDYSDLEQKSFKSEYGEIDEEEEQPEMKRMKREGE 299

Query: 244 IEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
            EG+    S+ V+EPR+VVQT SDID+L DG+RWRKYGQKVVKGN NPR
Sbjct: 300 DEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPR 348

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 7/195 (3%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct: 210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query: 162 TSTRRSSSSQSMQHSTC----ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQ 217
              RR+S   + Q        +++   ++  G    ++ +  +   E       DD  E 
Sbjct: 270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query: 218 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 277
            +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct: 330 AASNRN-KDEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query: 278 RKYGQKVVKGNPNPR 292
           RKYGQKVV+GNPNPR
Sbjct: 387 RKYGQKVVRGNPNPR 401

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/208 (47%), Positives = 124/208 (59%), Gaps = 26/208 (12%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K+  DGYNW+KYGQK+VKGS+ P SY+KCT+  CP K+KVERSLDGQ+ EIVYK  HNH 
Sbjct: 465 KQVNDGYNWQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVERSLDGQVAEIVYKDRHNHE 524

Query: 160 KPTSTRRSSS---SQSMQHSTCANSDLS------------DQSVGPLGNTHTDSFSMQNE 204
            P   +  S+   S S  H  C +S+L+             Q    L  T      ++  
Sbjct: 525 PPNQGKDGSTTYLSGSSTHINCMSSELTASQFSSNKTKIEQQEAASLATT------IEYM 578

Query: 205 SSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQT 264
           S  S  E+D       TS   G+ DE+EP+ KR   E  +  +     RTVREPR++ QT
Sbjct: 579 SEASDNEED---SNGETSE--GEKDEDEPEPKRRITEVQVSELADASDRTVREPRVIFQT 633

Query: 265 TSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           TS++D LDDGYRWRKYGQKVVKGNP PR
Sbjct: 634 TSEVDNLDDGYRWRKYGQKVVKGNPYPR 661

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  171 bits (434), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/220 (47%), Positives = 130/220 (59%), Gaps = 33/220 (15%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C  KKKVERS +G I EI+Y G H H KP
Sbjct: 177 ADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKP 236

Query: 162 TSTRR-----SSSSQSMQ-----HSTCANSDLSDQSVGPLG-----NTHTDSFSMQNESS 206
              RR     S + Q MQ     +   A ++ + +   P+       +H+ S  +QN  +
Sbjct: 237 PPNRRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSHSGSMQVQN-GT 295

Query: 207 TSFG--------------EDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGS 252
             FG              EDD     S +    G+ +E+E  +KR K E       G+ +
Sbjct: 296 HQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESE--SKRRKLEAYATETSGS-T 352

Query: 253 RTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           R  REPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR
Sbjct: 353 RASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 392

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 119/193 (61%), Gaps = 30/193 (15%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K ++DGYNWRKYGQK +KG E PRSY+KCT  +CP+KKKVERS DGQIT+I+YKG H+H 
Sbjct: 164 KPADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHE 223

Query: 160 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 219
           +P + R      S +             VG  G           ESS    +D    +  
Sbjct: 224 RPQNRRGGGGRDSTE-------------VGGAGQ--------MMESS----DDSGYRKDH 258

Query: 220 PTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRK 279
              +   +DDE+ P +K  +    I+GV  T  RTV EP+I+VQT S++D+LDDGYRWRK
Sbjct: 259 DDDDDDDEDDEDLPASKIRR----IDGV-STTHRTVTEPKIIVQTKSEVDLLDDGYRWRK 313

Query: 280 YGQKVVKGNPNPR 292
           YGQKVVKGNP+PR
Sbjct: 314 YGQKVVKGNPHPR 326

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/266 (39%), Positives = 131/266 (49%), Gaps = 46/266 (17%)

Query: 56  SEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQ 115
           SE AP  S SS   S Q+  + N              S + RE K  EDGYNWRKYGQK 
Sbjct: 79  SEKAPKVSESSGALSLQSGSEGN--------------SPFIRE-KVMEDGYNWRKYGQKL 123

Query: 116 VKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTS------------ 163
           VKG+E  RSY++CT P+C  KK++ERS  GQ+ + VY G H+HPKP +            
Sbjct: 124 VKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKPLAGAVPINQDKRSD 183

Query: 164 --TRRSSSSQ-----SMQHSTCANS-DL------SDQSVGPLGNTHTDSFSMQNESSTSF 209
             T  S   Q     S+ +  C  S D+      S  SV  L  T           S   
Sbjct: 184 VFTAVSKGEQRIDIVSLIYKLCIVSYDIMFVEKTSGSSVQTLRQTEPPKIHGGLHVSVIP 243

Query: 210 GEDDFVEQGSPTSNPIGDD---DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTS 266
             DD     S +S   GD+   D N P AKR K   +IE  +    R+  + RIVV T +
Sbjct: 244 PADDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQT 301

Query: 267 DIDILDDGYRWRKYGQKVVKGNPNPR 292
             DI++DGYRWRKYGQK VKG+P PR
Sbjct: 302 LFDIVNDGYRWRKYGQKSVKGSPYPR 327

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
409923417	587	WRKY transcription factor 17 [Dimocarpus	0.982	0.488	0.810	1e-133
224140533	534	predicted protein [Populus trichocarpa]	0.962	0.526	0.629	1e-92
356568170	540	PREDICTED: probable WRKY transcription f	0.979	0.529	0.616	5e-92
259121399	579	WRKY transcription factor 17 [(Populus t	0.962	0.485	0.625	8e-92
183979108	603	DNA-binding protein [Vitis thunbergii]	0.993	0.480	0.598	1e-90
225434421	603	PREDICTED: probable WRKY transcription f	0.993	0.480	0.598	2e-90
302399143	520	WRKY domain class transcription factor [	0.931	0.523	0.624	5e-89
255571505	558	transcription factor, putative [Ricinus	0.883	0.462	0.602	4e-88
356532213	543	PREDICTED: probable WRKY transcription f	0.979	0.526	0.599	4e-88
225439574	552	PREDICTED: probable WRKY transcription f	0.934	0.494	0.616	1e-87

>gi|409923417|gb|AEO31478.2| WRKY transcription factor 17 [Dimocarpus longan]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/291 (81%), Positives = 258/291 (88%), Gaps = 4/291 (1%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPM 61
           EEN++FDFSFQTQ RPSS  VSV EES KRQQE WNFNKP+K+ DFS E  G+KSEFAP 
Sbjct: 146 EENSFFDFSFQTQPRPSSTIVSV-EESTKRQQESWNFNKPSKQPDFSVEKSGMKSEFAPT 204

Query: 62  ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 121
           +SFSS+MAS+Q+N+QSN APQSG Y HY+QS+ YTREQKR+EDGYNWRKYGQKQVKGSEN
Sbjct: 205 QSFSSEMASFQSNMQSNTAPQSG-YSHYSQSTQYTREQKRAEDGYNWRKYGQKQVKGSEN 263

Query: 122 PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANS 181
           PRSY+KCT+PDCP KKKVERSLDGQITEIVYKGSHNHPKP STRR SSS SMQ STCANS
Sbjct: 264 PRSYYKCTYPDCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRR-SSSHSMQPSTCANS 322

Query: 182 DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGE 241
           ++SDQSVG L N   +SFSMQ +SS SFGED + +QGSPTSNP  DDDENEP+AKRWKGE
Sbjct: 323 EISDQSVGALANAQNESFSMQGDSSASFGEDSY-DQGSPTSNPGADDDENEPEAKRWKGE 381

Query: 242 NDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           NDIEG IGTGSR VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR
Sbjct: 382 NDIEGAIGTGSRXVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 432

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140533|ref|XP_002323637.1| predicted protein [Populus trichocarpa] gi|222868267|gb|EEF05398.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/302 (62%), Positives = 230/302 (76%), Gaps = 21/302 (6%)

Query: 2   EENNYFDFSFQTQTRPSS----------NSVSVQEESVKRQQEPWNFNKPTKESDFST-E 50
           EE NY DFSF TQTRP +          NSV+V E+S+KR+QE WNF++  K++DFS+ +
Sbjct: 94  EEKNYSDFSFPTQTRPPAISSSFFQSSSNSVTV-EKSLKRKQEEWNFDQ-LKQTDFSSDQ 151

Query: 51  NPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRK 110
             GVKSEFAP +SFSS++   Q N+QS       ++  YNQS+ Y RE KRS+DGYNWRK
Sbjct: 152 KTGVKSEFAPEQSFSSELVPLQANMQSVNTAAQPSFNQYNQSAHYMRENKRSDDGYNWRK 211

Query: 111 YGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSS 170
           YGQKQVKGSENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSS
Sbjct: 212 YGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSS 270

Query: 171 QSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDE 230
           Q +Q S  A+S++SDQS+ P+     +S  MQ +SS S GED+F +  S  S    +D+ 
Sbjct: 271 QLVQPSGGASSEISDQSIAPI-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNA 323

Query: 231 NEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 290
           NEPDAKRW+G+N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN
Sbjct: 324 NEPDAKRWQGQNENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 383

Query: 291 PR 292
           PR
Sbjct: 384 PR 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568170|ref|XP_003552286.1| PREDICTED: probable WRKY transcription factor 33-like [Glycine max]

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 180/292 (61%), Positives = 221/292 (75%), Gaps = 6/292 (2%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPM 61
           +E NY DFSFQTQ + S N    Q+E +K+Q + W FN+PTK+SDFS+E    KSE+  +
Sbjct: 104 DEKNYSDFSFQTQIQSSLNMF--QQEPLKKQ-DMWKFNEPTKQSDFSSERTATKSEYPSI 160

Query: 62  ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 121
           + FSS+MA+ +  +QSN+ P SG Y  Y  +S   REQKR+EDG+NWRKYGQKQVKGSEN
Sbjct: 161 QKFSSEMAAGKPEIQSNSVPGSG-YFDYTSASLSVREQKRAEDGFNWRKYGQKQVKGSEN 219

Query: 122 PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQ-HSTCAN 180
           PRSY+KCT P+C +KKKVE++L+GQITEIVYKG HNHPK  STRR++S    Q  S+C N
Sbjct: 220 PRSYYKCTHPNCSVKKKVEKTLEGQITEIVYKGQHNHPKLQSTRRTNSQSINQPSSSCTN 279

Query: 181 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 240
           S +SDQSV  LGN   D FS+Q +SS S GE++F EQ S TS   GD+D   PDAKRWK 
Sbjct: 280 SGISDQSVVTLGNPQMDHFSIQEDSSASVGEENF-EQTSQTSYSGGDEDNLGPDAKRWKE 338

Query: 241 ENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           +N  +G   +GSRTVREPR+VVQTTS+IDILDDG+RWRKYGQKVVKGNPN R
Sbjct: 339 DNKNDGYSVSGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNAR 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121399|gb|ACV92019.1| WRKY transcription factor 17 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  342 bits (878), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 189/302 (62%), Positives = 230/302 (76%), Gaps = 21/302 (6%)

Query: 2   EENNYFDFSFQTQTRPSS----------NSVSVQEESVKRQQEPWNFNKPTKESDFST-E 50
           +E NY DFSF TQTRP +          NSV+V E+S+KR+QE WNF++  K++DFS+ +
Sbjct: 139 QEKNYSDFSFPTQTRPPAISSSFFQSSSNSVTV-EKSLKRKQEEWNFDQ-LKQTDFSSDQ 196

Query: 51  NPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRK 110
             GVKSEFAP +SFSS++   Q N+QS       ++  YNQS+ Y RE K+S+DGYNWRK
Sbjct: 197 KTGVKSEFAPEQSFSSELGPLQANMQSVNTAAQPSFNQYNQSAHYMRENKKSDDGYNWRK 256

Query: 111 YGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSS 170
           YGQKQVKGSENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSS
Sbjct: 257 YGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSS 315

Query: 171 QSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDE 230
           Q +Q S  A+S++SDQSV P+     +S  MQ +SS S GED+F +  S  S    +D+ 
Sbjct: 316 QLVQPSGGASSEISDQSVAPV-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNA 368

Query: 231 NEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 290
           NEPDAKRW+G+N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN
Sbjct: 369 NEPDAKRWQGQNENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 428

Query: 291 PR 292
           PR
Sbjct: 429 PR 430

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183979108|emb|CAP08303.1| DNA-binding protein [Vitis thunbergii]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/306 (59%), Positives = 221/306 (72%), Gaps = 16/306 (5%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSV---------QEESVKRQQEPWNFNKPTKESDFSTENP 52
           E+ NY DFSFQ Q RPS+ S S+          E++++ QQ  W+F +PTK+  FS+E  
Sbjct: 143 EDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKT 202

Query: 53  GVKSEFAPMESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWR 109
            VKSEF   +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWR
Sbjct: 203 TVKSEFGSYQSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWR 262

Query: 110 KYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP--TSTRRS 167
           KYGQKQVKGSENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP  T     
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSL 322

Query: 168 SSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGD 227
           SSSQ++Q S   N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GD
Sbjct: 323 SSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGD 381

Query: 228 D-DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 286
           D DE+EP+AKRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVK
Sbjct: 382 DFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 441

Query: 287 GNPNPR 292
           GNPNPR
Sbjct: 442 GNPNPR 447

Source: Vitis thunbergii

Species: Vitis thunbergii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434421|ref|XP_002272040.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/306 (59%), Positives = 221/306 (72%), Gaps = 16/306 (5%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSV---------QEESVKRQQEPWNFNKPTKESDFSTENP 52
           E+ NY DFSFQ Q RPS+ S S+          E++++ QQ  W+F +PTK+  FS+E  
Sbjct: 143 EDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKT 202

Query: 53  GVKSEFAPMESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWR 109
            VKSEF   +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWR
Sbjct: 203 TVKSEFGSYQSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWR 262

Query: 110 KYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP--TSTRRS 167
           KYGQKQVKGSENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP  T     
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSL 322

Query: 168 SSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGD 227
           SSSQ++Q S   N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GD
Sbjct: 323 SSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGD 381

Query: 228 D-DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 286
           D DE+EP+AKRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVK
Sbjct: 382 DFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 441

Query: 287 GNPNPR 292
           GNPNPR
Sbjct: 442 GNPNPR 447

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399143|gb|ADL36866.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  333 bits (854), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 183/293 (62%), Positives = 225/293 (76%), Gaps = 21/293 (7%)

Query: 6   YFDFSFQTQTRPSSN-----SVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAP 60
           + DFSFQ ++RP++N     S+   EE  KR+++ W+F+  T+++D S E  GVKSEF P
Sbjct: 129 FSDFSFQPESRPATNLQSASSMVSVEEPFKRERQAWDFST-TRQADSSAEKTGVKSEFEP 187

Query: 61  MESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSE 120
           +E      A+ Q+N   N AP+S +Y H  QSS Y REQK S+DG+NWRKYGQKQVKGSE
Sbjct: 188 IE------ANTQSNGL-NGAPKS-DYLHSTQSSQYGREQK-SDDGFNWRKYGQKQVKGSE 238

Query: 121 NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCAN 180
           NPRSY+KCTFP+CP KKKVERSLDGQIT+IVYKGSHNHPKP STRRSSS+ ++Q S+   
Sbjct: 239 NPRSYYKCTFPNCPTKKKVERSLDGQITQIVYKGSHNHPKPQSTRRSSSN-AIQGSSYV- 296

Query: 181 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 240
             +SDQSV  L N   +S ++Q +SSTS GED+F EQ SP SN  G +DENEP+AKRWKG
Sbjct: 297 --ISDQSVPTLSNPKVESITLQEDSSTSMGEDEF-EQNSPISNSGGAEDENEPEAKRWKG 353

Query: 241 EN-DIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           EN + +  + +GSR V+EPRIVVQTTS+IDILDDGYRWRKYGQKVVKGNPNPR
Sbjct: 354 ENANDQAYVSSGSRIVKEPRIVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPR 406

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571505|ref|XP_002526700.1| transcription factor, putative [Ricinus communis] gi|223534000|gb|EEF35722.1| transcription factor, putative [Ricinus communis]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 177/294 (60%), Positives = 217/294 (73%), Gaps = 36/294 (12%)

Query: 2   EENNYFDFSFQTQTRPS-SNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAP 60
           +E  Y DFSFQTQTRP  ++S S  E+ V                        VK EF P
Sbjct: 157 DEKTYSDFSFQTQTRPLLASSSSPSEKGV------------------------VKQEFTP 192

Query: 61  MESFSSDMASYQTNVQSNA-APQ-SGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKG 118
           ++SFSS+MA  Q+++Q+NA APQ   +Y HY+Q ++Y REQ+RS+DGYNWRKYGQKQVKG
Sbjct: 193 VQSFSSEMAPLQSSMQTNAVAPQPQPSYNHYSQPASYMREQRRSDDGYNWRKYGQKQVKG 252

Query: 119 SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTC 178
           SENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPKP +    SSSQ +Q +  
Sbjct: 253 SENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQA---RSSSQLIQLAAG 309

Query: 179 ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRW 238
              ++SDQS  P+     +S +MQ +SS S G+D+F +Q SP SN  G++DENEP+AKR+
Sbjct: 310 GTQEISDQSFAPV-----ESVTMQEDSSLSIGDDEF-DQSSPISNSGGNEDENEPEAKRF 363

Query: 239 KGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           KG+N+ E ++  GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR
Sbjct: 364 KGQNENESILAAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532213|ref|XP_003534668.1| PREDICTED: probable WRKY transcription factor 33-like [Glycine max]

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 175/292 (59%), Positives = 216/292 (73%), Gaps = 6/292 (2%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPM 61
           +E NY DFSFQTQ + SSN   V  E +K+Q + W FN+PTK++DFS E    KSEF  +
Sbjct: 107 DEKNYSDFSFQTQIQSSSNMFQV--EPLKKQ-DMWKFNEPTKQTDFSPERTATKSEFPSI 163

Query: 62  ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 121
           +SFSS+MA  +  +QS++ P SG Y  Y  +S   REQKR+EDG+NW KYGQKQVKGSEN
Sbjct: 164 QSFSSEMAEGKPEIQSSSVPGSG-YFDYTSASQSVREQKRTEDGFNWIKYGQKQVKGSEN 222

Query: 122 PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQ-HSTCAN 180
           PRSY+KCT P+C +KKKVE+SLDG ITEIVYKG H+HPKP STRR++S    Q  S+C N
Sbjct: 223 PRSYYKCTHPNCSVKKKVEKSLDGHITEIVYKGQHSHPKPQSTRRTNSQSIHQPSSSCTN 282

Query: 181 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 240
           S ++D SV  LGN   D FS+Q +SS S GE++F EQ   TS   GD D   PDAKRWKG
Sbjct: 283 SGITDHSVVTLGNPQMDHFSIQEDSSASVGEEEF-EQTPQTSYSGGDGDNLGPDAKRWKG 341

Query: 241 ENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           +N+ +G   + SR+VREPR+VV+TTS+IDILDDG+RWRKYGQKVVKGN N R
Sbjct: 342 DNENDGYSVSASRSVREPRVVVETTSEIDILDDGFRWRKYGQKVVKGNSNAR 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439574|ref|XP_002264974.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 177/287 (61%), Positives = 211/287 (73%), Gaps = 14/287 (4%)

Query: 6   YFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFS 65
           + D  FQ+QTRPS        E++K  Q PWN +KP K++ F  E  GVKSEFA ++S S
Sbjct: 141 FSDLLFQSQTRPSGG------EALK-TQAPWNSDKPEKQTHFPQEKTGVKSEFASLQSLS 193

Query: 66  SDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSY 125
            ++AS QTN+QSN  PQSG   H   S +Y REQ+RS+DGYNWRKYGQKQVKGSENPRSY
Sbjct: 194 PEIASIQTNMQSNNIPQSGRSHHAQPSESY-REQRRSDDGYNWRKYGQKQVKGSENPRSY 252

Query: 126 FKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSD 185
           +KCTFP+CP KKKVERSL+G ITEIVYKG+H+HPKP   R SS S     +   NS++S 
Sbjct: 253 YKCTFPNCPTKKKVERSLEGHITEIVYKGTHSHPKPQPKRSSSQSFPSAST---NSEISG 309

Query: 186 QSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIE 245
            S+ P+GN + DS +    SS S GEDDF +Q SP S   G DDENE +AKRWKGE + E
Sbjct: 310 HSM-PIGNPYMDSMTTSENSSVSIGEDDF-DQNSPMSR-SGGDDENEREAKRWKGEYENE 366

Query: 246 GVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
            +  + SRTV+EPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR
Sbjct: 367 AISASESRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.691	0.389	0.630	1.4e-68
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.832	0.618	0.436	1.3e-49
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.791	0.450	0.446	2.5e-49
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.859	0.488	0.424	3.3e-47
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.205	0.087	0.766	5.3e-45
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.304	0.210	0.538	4.6e-44
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.784	0.120	0.415	4.6e-41
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.643	0.337	0.471	5.9e-41
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.205	0.105	0.7	4.8e-40
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.256	0.154	0.575	5e-35

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
 Identities = 135/214 (63%), Positives = 154/214 (71%)

Query:    90 NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 148
             NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct:   170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query:   149 EIVYKGSHNHPKPXXXXXXXXXXXXXXXXCANSDLSDQ----SVGPLGNT--H-TDSFSM 201
             EIVYKGSHNHPKP                  N+ L       S  P  N   H +DSF M
Sbjct:   230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query:   202 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 258
             Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct:   290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query:   259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
             RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR
Sbjct:   349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 382

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 113/259 (43%), Positives = 142/259 (54%)

Query:    35 PWNF-NKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSS 93
             PW   ++P+  S    E  GV+      E   +++A+ Q N QS    +      Y  S 
Sbjct:   105 PWQLQSQPSNASSALQETYGVQDHEKKQEMIPNEIAT-QNNNQSFGTERQIKIPAYMVS- 162

Query:    94 AYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYK 153
                   + S DGY WRKYGQKQVK SENPRSYFKCT+PDC  KK VE + DGQITEI+YK
Sbjct:   163 ------RNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYK 216

Query:   154 GSHNHPKPXXXXXXXXXXXXXXXXCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDD 213
             G HNHPKP                  N          +   H  S   +N SS SF   D
Sbjct:   217 GGHNHPKPEFTKRPSQSSLPSS---VNGRRLFNPASVVSEPHDQS---EN-SSISFDYSD 269

Query:   214 FVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDD 273
               ++   +     D++E +P+ KR K E + EG+    S+ V+EPR+VVQT SDID+L D
Sbjct:   270 LEQKSFKSEYGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLID 329

Query:   274 GYRWRKYGQKVVKGNPNPR 292
             G+RWRKYGQKVVKGN NPR
Sbjct:   330 GFRWRKYGQKVVKGNTNPR 348

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 109/244 (44%), Positives = 143/244 (58%)

Query:    55 KSEFAPMESFSSDMASY-QTNVQSNAAPQ--SGNYGHYNQSSAYTREQKRSEDGYNWRKY 111
             ++    + SFSS   S  + +VQ  +  Q  +     +   S      K ++DGYNWRKY
Sbjct:   199 QASLTEIPSFSSAPRSQIRASVQETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKY 258

Query:   112 GQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXXXX 171
             GQKQVKGS+ PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH  P          
Sbjct:   259 GQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELPQKRGNNNGS- 317

Query:   172 XXXXXXCANSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD 228
                   C +SD+++Q   S   L  +  D  + Q  ++    E    E+       +G+ 
Sbjct:   318 ------CKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEVGNAETSVGER 371

Query:   229 DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN 288
              E+EPD KR   E  +   + +  RTV EPRI+VQTTS++D+LDDGYRWRKYGQKVVKGN
Sbjct:   372 HEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGN 431

Query:   289 PNPR 292
             P PR
Sbjct:   432 PYPR 435

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 113/266 (42%), Positives = 151/266 (56%)

Query:    42 TKESDFSTENPGVKSEFAP---MESFSSDMASYQTNVQSNAAPQSGNYGHY-NQSSAYTR 97
             T ++  +  N   ++E+ P   ++SFSS  A   T+    A  ++ +     ++S     
Sbjct:   164 TAQAVQANANMQPQTEYPPPSQVQSFSSGQAQIPTSAPLPAQRETSDVTIIEHRSQQPLN 223

Query:    98 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHN 157
               K ++DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HN
Sbjct:   224 VDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHN 283

Query:   158 HPKPXXXXXXXXXXXXXXXXCA-NSDLSDQSVGPLG---NTHTDSFSMQNESSTSFGEDD 213
             H  P                 + N++     +G      N+   +   Q+E+ +     +
Sbjct:   284 HEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTE 343

Query:   214 FVEQ---GSPTSN---PIGDDDENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQTTS 266
              + +   G    N    + + DENEPD KR   E  I E       RTV EPRI+VQTTS
Sbjct:   344 HLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTS 403

Query:   267 DIDILDDGYRWRKYGQKVVKGNPNPR 292
             ++D+LDDGYRWRKYGQKVVKGNP PR
Sbjct:   404 EVDLLDDGYRWRKYGQKVVKGNPYPR 429

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 5.3e-45, Sum P(3) = 5.3e-45
 Identities = 46/60 (76%), Positives = 53/60 (88%)

Query:   102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
             +EDGYNWRKYGQK VKGSE PRSY+KCT P+C +KKKVERS +G ITEI+YKG+HNH KP
Sbjct:   272 AEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKP 331

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
 Identities = 49/91 (53%), Positives = 63/91 (69%)

Query:    73 TNVQSNAAPQSGNYGHYNQSSAYT--REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTF 130
             + V   A     N G+ N + +Y      K ++DGYNWRKYGQK +KG E PRSY+KCT 
Sbjct:   135 SQVDQRARNHYNNPGNNNNNRSYNVVNVDKPADDGYNWRKYGQKPIKGCEYPRSYYKCTH 194

Query:   131 PDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
              +CP+KKKVERS DGQIT+I+YKG H+H +P
Sbjct:   195 VNCPVKKKVERSSDGQITQIIYKGQHDHERP 225

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 101/243 (41%), Positives = 130/243 (53%)

Query:    61 MESFSSDMASYQTNV-QSNAAPQSGNYG-----HYNQSSAYTREQKRSEDGYNWRKYGQK 114
             ++SFSS      T+   S+   +S   G     H +Q        K+  DGYNW+KYGQK
Sbjct:   422 VQSFSSGQPQIPTSAPDSSLLAKSNTSGITIIEHMSQQPLNV--DKQVNDGYNWQKYGQK 479

Query:   115 QVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXXXXXXX 174
             +VKGS+ P SY+KCT+  CP K+KVERSLDGQ+ EIVYK  HNH  P             
Sbjct:   480 KVKGSKFPLSYYKCTYLGCPSKRKVERSLDGQVAEIVYKDRHNHEPPNQGKDGSTTYLSG 539

Query:   175 XXXCANSDLSDQSVGPLGNTHTDSFSMQNESSTS-----FGEDDFVEQGSPTSNPIGDDD 229
                  N   S+ +     +  T     Q  +S +       E    E+ S      G+ D
Sbjct:   540 SSTHINCMSSELTASQFSSNKT-KIEQQEAASLATTIEYMSEASDNEEDSNGETSEGEKD 598

Query:   230 ENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNP 289
             E+EP+ KR   E  +  +     RTVREPR++ QTTS++D LDDGYRWRKYGQKVVKGNP
Sbjct:   599 EDEPEPKRRITEVQVSELADASDRTVREPRVIFQTTSEVDNLDDGYRWRKYGQKVVKGNP 658

Query:   290 NPR 292
              PR
Sbjct:   659 YPR 661

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 92/195 (47%), Positives = 119/195 (61%)

Query:   102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
             ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct:   210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query:   162 XXXXXXXXXXXXXXXXC---ANSDLSDQSVGPLGNTHTDSFSMQN-ESSTSFGEDDFVEQ 217
                                  +S   D+    + N    +    N E       DD  E 
Sbjct:   270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query:   218 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 277
              +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct:   330 AASNRNK-DEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query:   278 RKYGQKVVKGNPNPR 292
             RKYGQKVV+GNPNPR
Sbjct:   387 RKYGQKVVRGNPNPR 401

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
 Identities = 42/60 (70%), Positives = 48/60 (80%)

Query:   102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
             ++DGYNWRKYGQK VKGSE PRSY+KCT P+C  KKKVERS +G I EI+Y G H H KP
Sbjct:   177 ADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKP 236

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 46/80 (57%), Positives = 58/80 (72%)

Query:    82 QSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVER 141
             QSG+ G+    S + RE K  EDGYNWRKYGQK VKG+E  RSY++CT P+C  KK++ER
Sbjct:    95 QSGSEGN----SPFIRE-KVMEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLER 149

Query:   142 SLDGQITEIVYKGSHNHPKP 161
             S  GQ+ + VY G H+HPKP
Sbjct:   150 SAGGQVVDTVYFGEHDHPKP 169

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00161228	hypothetical protein (534 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_II1481	hypothetical protein (372 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	4e-35
smart00774	59	smart00774, WRKY, DNA binding domain	7e-31
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	5e-11
smart00774	59	smart00774, WRKY, DNA binding domain	6e-11

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  120 bits (304), Expect = 4e-35
 Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK 160
            +DGYNWRKYGQK VKGS  PRSY++CT P CP+KK+VERS  D QI EI Y+G HNHPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  109 bits (275), Expect = 7e-31
 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 103 EDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH 158
           +DGY WRKYGQK +KGS  PRSY++CT+   CP KK+V+RS  D  + E+ Y+G H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 18/22 (81%), Positives = 19/22 (86%)

Query: 271 LDDGYRWRKYGQKVVKGNPNPR 292
           LDDGY WRKYGQK VKG+P PR
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPR 22

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score = 56.7 bits (138), Expect = 6e-11
 Identities = 18/22 (81%), Positives = 21/22 (95%)

Query: 271 LDDGYRWRKYGQKVVKGNPNPR 292
           LDDGY+WRKYGQKV+KG+P PR
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPR 22

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.33
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.3
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	86.5

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=4e-30  Score=191.56  Aligned_cols=59  Identities=61%  Similarity=1.217  Sum_probs=50.5

Q ss_pred             CCCCccccccccccCCCCCCCCCCCccCCCCCccccchhhcc-CCceEEEEEecccCCCC
Q 022760          102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK  160 (292)
Q Consensus       102 ~~DGy~WRKYGQK~ikgs~~pRsYYkCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~  160 (292)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            489999999999999999999999999999999999999987 77888999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=8.2e-29  Score=184.35  Aligned_cols=57  Identities=56%  Similarity=1.154  Sum_probs=54.7

Q ss_pred             CCCCccccccccccCCCCCCCCCCCccCC-CCCccccchhhcc-CCceEEEEEecccCC
Q 022760          102 SEDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH  158 (292)
Q Consensus       102 ~~DGy~WRKYGQK~ikgs~~pRsYYkCt~-~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH  158 (292)
                      .+|||.|||||||.|+|+++||+||||++ ++|+|+|+||++. |+.+++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 8999999999996 788999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.33  E-value=1.3e-13  Score=102.99  Aligned_cols=22  Identities=82%  Similarity=1.588  Sum_probs=18.7

Q ss_pred             CCCCccccccCccccCCCCCCC
Q 022760          271 LDDGYRWRKYGQKVVKGNPNPR  292 (292)
Q Consensus       271 ~dDGyrWRKYGQK~VKGnp~PR  292 (292)
                      |+|||+|||||||.|||+|+||
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pR   22 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPR   22 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEE
T ss_pred             CCCCCchhhccCcccCCCceee
Confidence            6999999999999999999998

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.30  E-value=7e-13  Score=99.05  Aligned_cols=22  Identities=82%  Similarity=1.599  Sum_probs=21.2

Q ss_pred             CCCCccccccCccccCCCCCCC
Q 022760          271 LDDGYRWRKYGQKVVKGNPNPR  292 (292)
Q Consensus       271 ~dDGyrWRKYGQK~VKGnp~PR  292 (292)
                      ++|||+|||||||.|||||+||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pR   22 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPR   22 (59)
T ss_pred             CCCcccccccCcEecCCCcCcc
Confidence            5899999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.50  E-value=0.17  Score=35.60  Aligned_cols=49  Identities=20%  Similarity=0.476  Sum_probs=22.8

Q ss_pred             cCCCCccccccccccCCCCCCCCCCCccCCC---CCccccchhhccCCceEEEEEecccCC
Q 022760          101 RSEDGYNWRKYGQKQVKGSENPRSYFKCTFP---DCPMKKKVERSLDGQITEIVYKGSHNH  158 (292)
Q Consensus       101 ~~~DGy~WRKYGQK~ikgs~~pRsYYkCt~~---~C~akK~Vqr~~dg~~~~i~Y~G~HnH  158 (292)
                      ..-|||.-++....      ....|++|+..   +|+|+=.+.  .++. ..+...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEEECCCccCC
Confidence            35677776554433      34579999864   899976665  2222 23455689998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-13
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		3e-08
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-13
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		7e-11

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 104 DGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVER-SLDGQITEIVYKGSHNHPKP 161
           DGY WRKYGQK VKGS  PRSY++C+ P CP+KK VER S D ++    Y+G H+H  P
Sbjct: 16  DGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           RIVV T +  DI++DGYRWRKYGQK VKG+P PR
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPR 35

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 96  TREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKG 154
           T E    +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G
Sbjct: 11  TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 70
Query: 155 SHNHPKP 161
            HNH  P
Sbjct: 71  KHNHDLP 77

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/31 (87%), Positives = 30/31 (96%)
Query: 262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PR
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 38

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	4e-28
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	5e-17
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-27
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  102 bits (256), Expect = 4e-28
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 103 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 161
            DGY WRKYGQK VKGS  PRSY++C+ P CP+KK VERS  D ++    Y+G H+H  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

Query: 162 T 162
            
Sbjct: 75  P 75

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 73.3 bits (180), Expect = 5e-17
 Identities = 24/34 (70%), Positives = 28/34 (82%)

Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           RIVV T +  DI++DGYRWRKYGQK VKG+P PR
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPR 35

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  100 bits (252), Expect = 2e-27
 Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 103 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 161
           +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G HNH  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 79.8 bits (197), Expect = 2e-19
 Identities = 27/37 (72%), Positives = 30/37 (81%)

Query: 256 REPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
                 VQTTS++D+LDDGYRWRKYGQKVVKGNP PR
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 38

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 40/354 (11%), Positives = 89/354 (25%), Gaps = 110/354 (31%)

Query: 5   NYFDFSFQT--QTRPSS--NSVSVQEESVKRQQE-PWNFNKPTKESDFSTENPGVKSEFA 59
           N F+ S +    TR     + +S    +                +S    +    + +  
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDL 318

Query: 60  PMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQK-RSEDGYNWRKYGQKQVK- 117
           P E            + +N  P+       +  +   R+     +   NW+     ++  
Sbjct: 319 PREV-----------LTTN--PR-----RLSIIAESIRDGLATWD---NWKHVNCDKLTT 357

Query: 118 ------GSENP---RSYFK-CT-FP-DCPMKKKVERSL----DGQITEIVYKGSHN---- 157
                     P   R  F   + FP    +   +   +          +V    H     
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 158 --HPKPTS---------TRRSSSSQSMQHSTCANS-------DLSDQSVGPLGN------ 193
              PK ++          +    ++   H +  +        D  D     L        
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 194 -------THTDSFSMQNESSTSFGEDDFVEQ-----GSPTSNPIGDDD------------ 229
                   H +  ++       F    F+EQ      +  +      +            
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 230 -ENEPDAKRWKGENDIEG-VIGTGSRTVREP-----RIVVQTTSDIDILDDGYR 276
            +N+P  +R    N I   +       +        RI +    +  I ++ ++
Sbjct: 535 CDNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRIALMAEDE-AIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.96
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.65
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.63

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.96  E-value=5.4e-31  Score=203.73  Aligned_cols=69  Identities=49%  Similarity=0.925  Sum_probs=63.1

Q ss_pred             ceeeecccCCCCccccccccccCCCCCCCCCCCccCCCCCccccchhhcc-CCceEEEEEecccCCCCCC
Q 022760           94 AYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  162 (292)
Q Consensus        94 ~~~~~~~~~~DGy~WRKYGQK~ikgs~~pRsYYkCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~P~  162 (292)
                      ++..+...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus         6 ~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            6 HTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             EecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            34455678999999999999999999999999999999999999999986 6678999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=6.5e-31  Score=204.12  Aligned_cols=69  Identities=51%  Similarity=0.925  Sum_probs=62.6

Q ss_pred             ceeeecccCCCCccccccccccCCCCCCCCCCCccCCCCCccccchhhcc-CCceEEEEEecccCCCCCC
Q 022760           94 AYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  162 (292)
Q Consensus        94 ~~~~~~~~~~DGy~WRKYGQK~ikgs~~pRsYYkCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~P~  162 (292)
                      ++..+...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus         9 ~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            9 QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             eccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            34455678999999999999999999999999999999999999999985 6778999999999999883

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.65  E-value=2.4e-17  Score=127.48  Aligned_cols=35  Identities=69%  Similarity=1.223  Sum_probs=33.8

Q ss_pred             cceeeecccccccCCCCccccccCccccCCCCCCC
Q 022760          258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR  292 (292)
Q Consensus       258 prvvv~t~s~~di~dDGyrWRKYGQK~VKGnp~PR  292 (292)
                      .||+|+|.+++++++|||+|||||||.||||||||
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PR   35 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPR   35 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCE
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCce
Confidence            48999999999999999999999999999999998

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.63  E-value=3.6e-17  Score=127.00  Aligned_cols=35  Identities=77%  Similarity=1.270  Sum_probs=30.7

Q ss_pred             cceeeecccccccCCCCccccccCccccCCCCCCC
Q 022760          258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR  292 (292)
Q Consensus       258 prvvv~t~s~~di~dDGyrWRKYGQK~VKGnp~PR  292 (292)
                      .+|+|+|.+++++++|||+|||||||.||||||||
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PR   38 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR   38 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCE
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCee
Confidence            48999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	5e-27
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	7e-14

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.4 bits (245), Expect = 5e-27
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 96  TREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKG 154
           T E    +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G
Sbjct: 4   TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 63

Query: 155 SHNHPKP 161
            HNH  P
Sbjct: 64  KHNHDLP 70

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.3 bits (154), Expect = 7e-14
 Identities = 27/31 (87%), Positives = 30/31 (96%)

Query: 262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PR
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.96
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.6

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=9.1e-32  Score=203.74  Aligned_cols=68  Identities=51%  Similarity=0.940  Sum_probs=62.4

Q ss_pred             eeeecccCCCCccccccccccCCCCCCCCCCCccCCCCCccccchhhcc-CCceEEEEEecccCCCCCC
Q 022760           95 YTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  162 (292)
Q Consensus        95 ~~~~~~~~~DGy~WRKYGQK~ikgs~~pRsYYkCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~P~  162 (292)
                      +..+...++|||+|||||||.|+|+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus         3 t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           3 TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            3455678999999999999999999999999999999999999999987 6788999999999999884

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=6.2e-17  Score=121.86  Aligned_cols=31  Identities=87%  Similarity=1.507  Sum_probs=29.8

Q ss_pred             eecccccccCCCCccccccCccccCCCCCCC
Q 022760          262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPR  292 (292)
Q Consensus       262 v~t~s~~di~dDGyrWRKYGQK~VKGnp~PR  292 (292)
                      |+|.++++++||||+|||||||.|||+|+||
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pR   31 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR   31 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCE
T ss_pred             CccccccccCCCCcEecccCceeccCCCCce
Confidence            6788999999999999999999999999998