Citrus Sinensis ID: 022764

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR
Secondary Structure (PSIPRED)
ccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccHHHHHHHHHccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHccccccccccEEEccHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHccHHcccccccHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHccccEccccccccc
Coil and Loop (DISEMBL)
mflrrgfsetkdkvAVGKIKVEEAAKKTAQKSKTILTDIERWQkgvastdvfgvpiEVTVqrqqygkpvphiLVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMynqdpnaslpegvnpfDVAALAKYYLaslpeplttfelYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVImwqkerkpefyRQYWNhasrsssknmepatphgewdmladeseemdassaiplddgmpidfGAIEVVQCLMEQHNaiftdanetvwr
Flexible Loop (DISEMBL)
mflrrgfsetkdkvavgkikveeaakktaqksktiltdierwqkgvastdvfgVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHasrsssknmepaTPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNaiftdanetvwr
Low Complexity Region (SEG)
MFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR
Disordered region (IsUnstruct)
*********************************TILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWN**************************************DGMPIDFGAIEVVQCLMEQHNAIFTDAN*****
Disordered Region (DISOPRED)
**********K*KVAVGKIKVEEAA**************************FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE************ASRSSSKNMEPATPHGEWDMLAD***********************IEVVQCLMEQHNAIFTD***TVWR
Disordered Region (DISEMBL)
********ETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHA*************HGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR
Disordered Region (DISPRO)
*F**RGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADE*****************IDFGAIEVVQCLMEQHNAIFTDANETVWR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
Q3E875	376	Uncharacterized Rho GTPas	yes	no	0.986	0.765	0.747	1e-128
Q9VTU3	476	Rho GTPase-activating pro	yes	no	0.595	0.365	0.294	4e-16
Q54FG5	873	Rho GTPase-activating pro	yes	no	0.554	0.185	0.292	5e-15
P97393	1501	Rho GTPase-activating pro	yes	no	0.537	0.104	0.301	1e-14
Q13017	1502	Rho GTPase-activating pro	yes	no	0.537	0.104	0.295	2e-14
P81128	1513	Rho GTPase-activating pro	yes	no	0.592	0.114	0.276	2e-14
Q9NRY4	1499	Rho GTPase-activating pro	no	no	0.554	0.108	0.270	7e-14
Q91YM2	1499	Rho GTPase-activating pro	no	no	0.592	0.115	0.270	7e-14
P83509	1500	Rho GTPase-activating pro	no	no	0.554	0.108	0.270	8e-14
Q8C4V1	747	Rho GTPase-activating pro	no	no	0.602	0.235	0.274	2e-13

>sp|Q3E875|RGAP1_ARATH Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2

 Score =  456 bits (1173), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/293 (74%), Positives = 253/293 (86%), Gaps = 5/293 (1%)

Query: 2   FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
           F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQ
Sbjct: 87  FVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQ 146

Query: 62  RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
           RQ+  +P+P ILVKCADYL+L+GLNS  LFKAEGD+K+IQ LVS YNQDP AS+PEGVNP
Sbjct: 147 RQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNP 206

Query: 122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            DVAAL KYYLASLP PLTTFELY+EIK ARSSIH MR +L+KLSNVN+ TLE++TALLL
Sbjct: 207 VDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLL 266

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS--SSKNMEPATPHGE 239
           RVSQKSLLNKMD+ SLAMEMAPVIMW+++ +PE YR+YW   SRS   S + E ATP   
Sbjct: 267 RVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETATP--- 323

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WD+L+DE E  DASS+IPLDD   +DFGA+EVVQCL+E HNAIFTDA ETVWR
Sbjct: 324 WDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VTU3|RG68F_DROME Rho GTPase-activating protein 68F OS=Drosophila melanogaster GN=RhoGAP68F PE=1 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 30/204 (14%)

Query: 43  QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQ 101
           Q  +A+T  FGVP++  V        +P I+ KC D L ++G ++++ +F+  G+   I 
Sbjct: 265 QHKMATTHQFGVPLKFIVMNSPCLNSIPPIVRKCVDSLSITGVIDTEGIFRRSGNHSEIM 324

Query: 102 HLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKG---------AR 152
            L    N+  +  L + VN   +A L K +L  L EPL TFELY+++ G         +R
Sbjct: 325 ALKERVNRGEDVDL-KSVNVHVIAGLLKSFLRDLAEPLLTFELYEDVTGFLDWPKEERSR 383

Query: 153 SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 212
           +    +R   +KL   N+   +Y+   L+RV     LNKM + +LA+   P  +W     
Sbjct: 384 NVTQLIR---EKLPEENYELFKYIVEFLVRVMDCEDLNKMTSSNLAIVFGPNFLW----- 435

Query: 213 PEFYRQYWNHASRSSSKNMEPATP 236
                      SRS+S ++E   P
Sbjct: 436 -----------SRSTSTSLEEIAP 448

Functions as a GTPase-activating protein (GAP) for RhoA/Rho1 during gastrulation by converting it to an inactive GDP-bound state.

Drosophila melanogaster (taxid: 7227)

>sp|Q54FG5|GACJJ_DICDI Rho GTPase-activating protein gacJJ OS=Dictyostelium discoideum GN=gacJJ PE=3 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           VFGVPIE TV        +P ++++  DY+    ++   +F+  G    I+   + Y++ 
Sbjct: 425 VFGVPIEKTVSGNN---EIPAVVLQTIDYIEKKAMDIVGIFRLSGSVLTIEQWKAKYDKG 481

Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKK 164
               L + V+P  VA L K YL  LP+PL T+E YD    A+      S I  +++ +K 
Sbjct: 482 EKVDLFQEVDPHAVAGLLKLYLRELPDPLLTYEKYDNFIAAQSIDDFPSRIKLIKHLVKS 541

Query: 165 LSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
           L  VN+  L Y+ A + +V+  S  NKM   +L+    P ++  ++   ++
Sbjct: 542 LPPVNYAVLSYLMAFVGKVATHSAANKMQVHNLSTVFGPNLIKDRQDSGDY 592

Rho GTPase-activating protein involved in the signal transduction pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|P97393|RHG05_MOUSE Rho GTPase-activating protein 5 OS=Mus musculus GN=Arhgap5 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 19/176 (10%)

Query: 49   TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 108
            ++ FG+P++  V  +   KP+P  + KC +++  +GL ++ L++  G+K    ++   ++
Sbjct: 1256 SNYFGMPLQDLVTAE---KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFD 1312

Query: 109  QDPN---ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSIHAMR 159
            QD N   AS+   VN   VA   K + A LP+PL  + L+ E      I       HA++
Sbjct: 1313 QDHNINLASMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERFHALK 1370

Query: 160  NTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
              +KK   VN+    YV   L RVSQ++ +N M A +L++   P +M     +P+F
Sbjct: 1371 EIVKKFHPVNYDVFRYVITHLNRVSQQNKINLMTADNLSICFWPTLM-----RPDF 1421

GTPase-activating protein for Rho family members. May play a role in the reduction of the p21rasGTPase-activating potential of RASA1/p120GAP.

Mus musculus (taxid: 10090)

>sp|Q13017|RHG05_HUMAN Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 19/176 (10%)

Query: 49   TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 108
            ++ FG+P++  V  +   KP+P  + KC +++  +GL ++ L++  G+K    ++   ++
Sbjct: 1257 SNYFGMPLQDLVTAE---KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFD 1313

Query: 109  QDPN---ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSIHAMR 159
            QD N    S+   VN   VA   K + A LP+PL  + L+ E      I      +HA++
Sbjct: 1314 QDHNINLVSMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK 1371

Query: 160  NTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
              +KK   VN+    YV   L RVSQ+  +N M A +L++   P +M     +P+F
Sbjct: 1372 EIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLM-----RPDF 1422

GTPase-activating protein for Rho family members. May play a role in the reduction of the p21rasGTPase-activating potential of RASA1/p120GAP.

Homo sapiens (taxid: 9606)

>sp|P81128|RHG35_RAT Rho GTPase-activating protein 35 OS=Rattus norvegicus GN=Arhgap35 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 19/192 (9%)

Query: 44   KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 103
            K    ++ FGVP+   V  +   KP+P  + +C +Y+  +GL+++ +++  G+K  ++ L
Sbjct: 1239 KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESL 1295

Query: 104  VSMYNQDPNASLPE---GVNPFDVAALAKYYLASLPEPLTTFELY------DEIKGARSS 154
               ++QD N  L E    VN   VA   K + + LP+PL  + +        +I      
Sbjct: 1296 QRQFDQDHNLDLAEKDFTVN--TVAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQK 1353

Query: 155  IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
            +HA++  LKK    N    +YV + L RVS  + +N M + +L++   P +M     +P+
Sbjct: 1354 LHALKEVLKKFPKENHEVFKYVISHLNRVSHNNKVNLMTSENLSICFWPTLM-----RPD 1408

Query: 215  FYRQYWNHASRS 226
            F       A+RS
Sbjct: 1409 FSSMDALTATRS 1420

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Rattus norvegicus (taxid: 10116)

>sp|Q9NRY4|RHG35_HUMAN Rho GTPase-activating protein 35 OS=Homo sapiens GN=ARHGAP35 PE=1 SV=3

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 19/181 (10%)

Query: 44   KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 103
            K    ++ FGVP+   V  +   KP+P  + +C +Y+  +GL+++ +++  G+K  ++ L
Sbjct: 1239 KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESL 1295

Query: 104  VSMYNQDPNASLPE---GVNPFDVAALAKYYLASLPEPLTTFELY------DEIKGARSS 154
               ++QD N  L E    VN   VA   K + + LP+PL  + +        +I      
Sbjct: 1296 QRQFDQDHNLDLAEKDFTVNT--VAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQK 1353

Query: 155  IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
            +HA++  LKK    N    +YV + L +VS  + +N M + +L++   P +M     +P+
Sbjct: 1354 LHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLM-----RPD 1408

Query: 215  F 215
            F
Sbjct: 1409 F 1409

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May participate in the regulation of retinal development and degeneration. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Homo sapiens (taxid: 9606)

>sp|Q91YM2|RHG35_MOUSE Rho GTPase-activating protein 35 OS=Mus musculus GN=Arhgap35 PE=1 SV=3

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 19/192 (9%)

Query: 44   KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 103
            K    ++ FGVP+   V  +   KP+P  + +C +Y+  +GL+++ +++  G+K  ++ L
Sbjct: 1239 KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESL 1295

Query: 104  VSMYNQDPNASLPE---GVNPFDVAALAKYYLASLPEPLTTFELY------DEIKGARSS 154
               ++QD N  L E    VN   VA   K + + LP+PL  + +        +I      
Sbjct: 1296 QRQFDQDHNLDLAEKDFTVNT--VAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQK 1353

Query: 155  IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
            +HA++  LKK    N    +YV + L +VS  + +N M + +L++   P +M     +P+
Sbjct: 1354 LHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLM-----RPD 1408

Query: 215  FYRQYWNHASRS 226
            F       A+RS
Sbjct: 1409 FSSMDALTATRS 1420

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May participate in the regulation of retinal development and degeneration. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Mus musculus (taxid: 10090)

>sp|P83509|RHG35_CANFA Rho GTPase-activating protein 35 OS=Canis familiaris GN=ARHGAP35 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 19/181 (10%)

Query: 44   KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 103
            K    ++ FGVP+   V  +   KP+P  + +C +Y+  +GL+++ +++  G+K  ++ L
Sbjct: 1240 KATWESNYFGVPLTTVVTPE---KPIPVFIERCIEYIEATGLSTEGIYRVSGNKSEMESL 1296

Query: 104  VSMYNQDPNASLPE---GVNPFDVAALAKYYLASLPEPLTTFELY------DEIKGARSS 154
               ++QD N  L E    VN   VA   K + + LP+PL  + +        +I      
Sbjct: 1297 QRQFDQDHNLDLAEKDFTVNT--VAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQK 1354

Query: 155  IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
            +HA++  LKK    N    +YV + L +VS  + +N M + +L++   P +M     +P+
Sbjct: 1355 LHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLM-----RPD 1409

Query: 215  F 215
            F
Sbjct: 1410 F 1410

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May participate in the regulation of retinal development and degeneration. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Canis familiaris (taxid: 9615)

>sp|Q8C4V1|RHG24_MOUSE Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 17/193 (8%)

Query: 38  DIERWQK-------GVASTDVFGVPIEVTVQ-RQQYG-KPVPHILVKCADYLVLSGLNSQ 88
           D+E W K       G     +FG  +E TV+  ++YG +  P ++ +C D++   GL  +
Sbjct: 110 DMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEE 169

Query: 89  FLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEI 148
            LF+  G   +++ L   ++     S     +   VA+L K YL  LPEP+  +  Y++ 
Sbjct: 170 GLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVVPYAKYEDF 229

Query: 149 --------KGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200
                   K   + +  +   +K L  VN+  L+Y+   L  V   S +NKM A++LA  
Sbjct: 230 LSCATLLSKEEEAGVKELMKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSAQNLATV 289

Query: 201 MAPVIMWQKERKP 213
             P I+  K   P
Sbjct: 290 FGPNILRPKVEDP 302

Rho GTPase-activating protein involved in cell polarity, cell morphology and cytoskeletal organization. Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Controls actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity. Able to suppress RAC1 and CDC42 activity in vitro. Overexpression induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Isoform 2 is a vascular cell-specific GAP involved in modulation of angiogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
255539855	369	Rho GTPase activator, putative [Ricinus	1.0	0.791	0.808	1e-139
224129900	377	predicted protein [Populus trichocarpa]	0.996	0.771	0.822	1e-139
356544212	379	PREDICTED: uncharacterized Rho GTPase-ac	0.996	0.767	0.767	1e-130
363807312	379	uncharacterized protein LOC100810167 [Gl	0.993	0.765	0.768	1e-130
18424478	376	uncharacterized Rho GTPase-activating pr	0.986	0.765	0.747	1e-126
297793703	376	small G protein family protein [Arabidop	0.986	0.765	0.744	1e-126
334188546	376	uncharacterized Rho GTPase-activating pr	0.986	0.765	0.747	1e-125
21553593	376	unknown [Arabidopsis thaliana]	0.986	0.765	0.744	1e-125
449458339	383	PREDICTED: uncharacterized Rho GTPase-ac	0.996	0.759	0.750	1e-123
42573754	367	uncharacterized Rho GTPase-activating pr	0.955	0.760	0.716	1e-118

>gi|255539855|ref|XP_002510992.1| Rho GTPase activator, putative [Ricinus communis] gi|223550107|gb|EEF51594.1| Rho GTPase activator, putative [Ricinus communis]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/293 (80%), Positives = 263/293 (89%), Gaps = 1/293 (0%)

Query: 1   MFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTV 60
           MFLR+G S TKDKVAVGK KVEE AK+TAQKSKTILTDIERWQKGVASTDVFGVPIEVTV
Sbjct: 77  MFLRKGMSGTKDKVAVGKTKVEEVAKRTAQKSKTILTDIERWQKGVASTDVFGVPIEVTV 136

Query: 61  QRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVN 120
           QRQ+  +P+PHILVKCADYL+LSGLNS  LFKAEGD K IQ L+S+YNQD +ASLPEGVN
Sbjct: 137 QRQESSRPIPHILVKCADYLILSGLNSMQLFKAEGDIKAIQQLISIYNQDASASLPEGVN 196

Query: 121 PFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALL 180
           P DVAAL K+YLASLPEPLTTFELY+EIKGARSSI+AM+N LKKL  VN+MTLE +TALL
Sbjct: 197 PLDVAALIKFYLASLPEPLTTFELYNEIKGARSSIYAMKNILKKLPTVNYMTLELITALL 256

Query: 181 LRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASR-SSSKNMEPATPHGE 239
           LRVSQKSLLNKMDARSLAME APVIMW+KE+KPE YRQ+WN ASR SS K+M+ A  + E
Sbjct: 257 LRVSQKSLLNKMDARSLAMETAPVIMWRKEQKPEIYRQFWNQASRYSSKKSMDQAPVYSE 316

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WDML++E E MDASSAIPLDDG P+DFGAIEV+QCL+EQHNAIFTDANETVWR
Sbjct: 317 WDMLSEEGEGMDASSAIPLDDGTPMDFGAIEVIQCLIEQHNAIFTDANETVWR 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129900|ref|XP_002328831.1| predicted protein [Populus trichocarpa] gi|222839129|gb|EEE77480.1| predicted protein [Populus trichocarpa]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/293 (82%), Positives = 261/293 (89%), Gaps = 2/293 (0%)

Query: 1   MFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTV 60
           MF R+G SETKDKV VGK KVEE AKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTV
Sbjct: 86  MFFRKGISETKDKVTVGKTKVEEVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTV 145

Query: 61  QRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVN 120
           QRQ++ K VPHILVKCADYL+LSGLNS  LFKAEGDKKVIQ LVS+YNQD NASLPEG+N
Sbjct: 146 QRQEFSKLVPHILVKCADYLILSGLNSVDLFKAEGDKKVIQQLVSLYNQDSNASLPEGLN 205

Query: 121 PFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALL 180
           P DVA LAK YLASLPEPLTTFELYDEIKGARSSIH M+N LKKL  VN+MTLE++TALL
Sbjct: 206 PIDVAFLAKCYLASLPEPLTTFELYDEIKGARSSIHVMKNILKKLPAVNYMTLEFITALL 265

Query: 181 LRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS-SSKNMEPATPHGE 239
           LRVSQKSLLNKMDAR++A EMAPVIMWQKERKPE YR YWN+ SRS S KNM+PA  +  
Sbjct: 266 LRVSQKSLLNKMDARAIATEMAPVIMWQKERKPETYRSYWNNLSRSPSKKNMDPAPTYSA 325

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WDML+ ESE+MDASS IPLDD MP DFGAI++VQCL+EQHNAIFTDANETVWR
Sbjct: 326 WDMLS-ESEDMDASSLIPLDDAMPTDFGAIDIVQCLIEQHNAIFTDANETVWR 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544212|ref|XP_003540548.1| PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530-like [Glycine max]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/293 (76%), Positives = 248/293 (84%), Gaps = 2/293 (0%)

Query: 2   FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
            LRRGFS TKDKV VGK KVEE AK TAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ
Sbjct: 87  LLRRGFSGTKDKVVVGKSKVEEVAKITAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 146

Query: 62  RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
           RQ   KP+P IL+ CADYL++SGLNS  LFK+EGDKKVI  LVS+YNQD  AS+PEG  P
Sbjct: 147 RQDCCKPIPQILINCADYLIVSGLNSPHLFKSEGDKKVIHQLVSLYNQDSTASVPEGTTP 206

Query: 122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            DVAAL KYYLASLPEPLTT ELY+EI+GARSSI++MRN LK+LS+VN+MTLE++TALLL
Sbjct: 207 VDVAALVKYYLASLPEPLTTLELYNEIRGARSSIYSMRNILKRLSSVNYMTLEFITALLL 266

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNM--EPATPHGE 239
           RVSQKSLLNKMDAR LAMEMAPVIMWQKER PEFY QYWN  S+S SK     P   +  
Sbjct: 267 RVSQKSLLNKMDARCLAMEMAPVIMWQKERTPEFYHQYWNQMSKSPSKKSVDPPPGSYTA 326

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WDMLAD+ E +DASS IPLDDG P+DFGAIEVVQ L+E HNAIFTDANETVW+
Sbjct: 327 WDMLADDGEAIDASSPIPLDDGTPVDFGAIEVVQLLIEHHNAIFTDANETVWK 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807312|ref|NP_001242623.1| uncharacterized protein LOC100810167 [Glycine max] gi|255635720|gb|ACU18209.1| unknown [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/294 (76%), Positives = 252/294 (85%), Gaps = 4/294 (1%)

Query: 2   FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
            LRRGFS TKDKV VGK KVEE AK TAQKSKTILTDIERWQKG+ASTD+FGVPIEVT Q
Sbjct: 87  LLRRGFSGTKDKVVVGKSKVEEVAKITAQKSKTILTDIERWQKGIASTDLFGVPIEVTAQ 146

Query: 62  RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
           RQ   KP+P ILVKC DYL++SGLNS  LFK+EGDKKVI  LVS+YNQD  AS+PEG NP
Sbjct: 147 RQDCSKPIPQILVKCGDYLIVSGLNSPNLFKSEGDKKVIHQLVSLYNQDSTASVPEGTNP 206

Query: 122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            DVAAL KYYLASLPEPLTT ELY+EI+ ARSSI++MRN LK+LS+VN+MTLE++TALLL
Sbjct: 207 VDVAALVKYYLASLPEPLTTLELYNEIRSARSSIYSMRNILKRLSSVNYMTLEFITALLL 266

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS-SSKNMEPATP--HG 238
           RVSQKSLLNKMDARSLAMEMAPVIMWQKER+PEFY QYWN  S+S S+K ++P TP  + 
Sbjct: 267 RVSQKSLLNKMDARSLAMEMAPVIMWQKERRPEFYHQYWNQVSKSLSNKTVDP-TPGSYT 325

Query: 239 EWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
            WDMLAD+ E  DASS IPLDDG P+DFGAIEVVQ L E HNAIFTDANETVW+
Sbjct: 326 AWDMLADDGEATDASSPIPLDDGTPVDFGAIEVVQLLTEHHNAIFTDANETVWK 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424478|ref|NP_568935.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] gi|172046652|sp|Q3E875.2|RGAP1_ARATH RecName: Full=Uncharacterized Rho GTPase-activating protein At5g61530 gi|15028203|gb|AAK76598.1| unknown protein [Arabidopsis thaliana] gi|22136944|gb|AAM91816.1| unknown protein [Arabidopsis thaliana] gi|332010097|gb|AED97480.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/293 (74%), Positives = 253/293 (86%), Gaps = 5/293 (1%)

Query: 2   FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
           F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQ
Sbjct: 87  FVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQ 146

Query: 62  RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
           RQ+  +P+P ILVKCADYL+L+GLNS  LFKAEGD+K+IQ LVS YNQDP AS+PEGVNP
Sbjct: 147 RQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNP 206

Query: 122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            DVAAL KYYLASLP PLTTFELY+EIK ARSSIH MR +L+KLSNVN+ TLE++TALLL
Sbjct: 207 VDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLL 266

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS--SSKNMEPATPHGE 239
           RVSQKSLLNKMD+ SLAMEMAPVIMW+++ +PE YR+YW   SRS   S + E ATP   
Sbjct: 267 RVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETATP--- 323

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WD+L+DE E  DASS+IPLDD   +DFGA+EVVQCL+E HNAIFTDA ETVWR
Sbjct: 324 WDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793703|ref|XP_002864736.1| small G protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297310571|gb|EFH40995.1| small G protein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/293 (74%), Positives = 254/293 (86%), Gaps = 5/293 (1%)

Query: 2   FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
            +R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQ
Sbjct: 87  LVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQ 146

Query: 62  RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
           RQ+  +P+P IL+KCADYL+L+GLNS  LFKAEGDKK+IQ LVS YNQDP+AS+PEGVNP
Sbjct: 147 RQESSRPIPLILIKCADYLILTGLNSPNLFKAEGDKKLIQQLVSAYNQDPSASIPEGVNP 206

Query: 122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            DVAAL KYYLASLP PLTTFELY+EIK ARSSIH MR +L+KLSNVN+ TLE++TALLL
Sbjct: 207 VDVAALMKYYLASLPTPLTTFELYNEIKDARSSIHRMRKSLQKLSNVNYNTLEFITALLL 266

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS--SSKNMEPATPHGE 239
           RVSQKSLLNKMD+ SLAMEMAPVIMW+++ +PE YR+YW   SRS   S + E ATP   
Sbjct: 267 RVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETATP--- 323

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WD+L+DE E  DASS+IPLDD + +DFGA+EVVQCL+E HNAIFTDA ETVWR
Sbjct: 324 WDLLSDEGEGPDASSSIPLDDIVQVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188546|ref|NP_001190587.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] gi|332010099|gb|AED97482.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/293 (74%), Positives = 253/293 (86%), Gaps = 5/293 (1%)

Query: 2   FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
           F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQ
Sbjct: 87  FVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQ 146

Query: 62  RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
           RQ+  +P+P ILVKCADYL+L+GLNS  LFKAEGD+K+IQ LVS YNQDP AS+PEGVNP
Sbjct: 147 RQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNP 206

Query: 122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            DVAAL KYYLASLP PLTTFELY+EIK ARSSIH MR +L+KLSNVN+ TLE++TALLL
Sbjct: 207 VDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLL 266

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS--SSKNMEPATPHGE 239
           RVSQKSLLNKMD+ SLAMEMAPVIMW+++ +PE YR+YW   SRS   S + E ATP   
Sbjct: 267 RVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETATP--- 323

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WD+L+DE E  DASS+IPLDD   +DFGA+EVVQCL+E HNAIFTDA ETVWR
Sbjct: 324 WDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553593|gb|AAM62686.1| unknown [Arabidopsis thaliana]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/293 (74%), Positives = 252/293 (86%), Gaps = 5/293 (1%)

Query: 2   FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
           F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQ
Sbjct: 87  FVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQ 146

Query: 62  RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
           RQ+  +P+P ILVKCADYL+L+GLNS  LFKAEGD+K+IQ LVS YNQDP AS+PEGVNP
Sbjct: 147 RQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNP 206

Query: 122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            DVAAL KYYLASLP PLTTFELY+EIK ARSSIH MR +L+KLSNVN+ TLE++TALLL
Sbjct: 207 VDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLL 266

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS--SSKNMEPATPHGE 239
           RVSQKSLLN MD+ SLAMEMAPVIMW+++ +PE YR+YW   SRS   S + E ATP   
Sbjct: 267 RVSQKSLLNXMDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETATP--- 323

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WD+L+DE E  DASS+IPLDD   +DFGA+EVVQCL+E HNAIFTDA ETVWR
Sbjct: 324 WDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458339|ref|XP_004146905.1| PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530-like [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/293 (75%), Positives = 256/293 (87%), Gaps = 2/293 (0%)

Query: 2   FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
           F R+G SETKDKV VGK+KVEE AKKTAQKSKTILTDIERWQKGVASTDVFGV IEVTVQ
Sbjct: 91  FFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTILTDIERWQKGVASTDVFGVSIEVTVQ 150

Query: 62  RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
           +QQ  + +PHILV+CADYLVLSGLNS +LFK++GDKKV+Q LVSMYNQDPNA LPEG NP
Sbjct: 151 KQQSSRVIPHILVRCADYLVLSGLNSPWLFKSDGDKKVLQQLVSMYNQDPNAPLPEGTNP 210

Query: 122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            DVAALAK YLASLPEPL TFELY+EI+GAR+SI+A+RN  KKL NVN+MTLE+ TALLL
Sbjct: 211 VDVAALAKCYLASLPEPLVTFELYNEIRGARTSINALRNIFKKLPNVNYMTLEFTTALLL 270

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATP--HGE 239
           RVSQK+LLNKMDARSL+MEM P+IMWQ +R+PEFYR+YW++ S+SSS      TP  +  
Sbjct: 271 RVSQKALLNKMDARSLSMEMTPIIMWQNDRRPEFYREYWDYHSKSSSAKSLNNTPPTYSA 330

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WDML++ES++ DASS IPLDDG+P+DF A+EVVQCL+E HN IFTDANET+WR
Sbjct: 331 WDMLSEESDDTDASSHIPLDDGVPVDFNAVEVVQCLIEHHNEIFTDANETIWR 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573754|ref|NP_974973.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] gi|332010098|gb|AED97481.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/293 (71%), Positives = 244/293 (83%), Gaps = 14/293 (4%)

Query: 2   FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
           F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQ
Sbjct: 87  FVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQ 146

Query: 62  RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
           RQ+  +P+P ILVKCADYL+L+GLNS  LFKAEGD+K+IQ LVS YNQDP AS+PEGVNP
Sbjct: 147 RQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNP 206

Query: 122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            DVAAL KYYLASLP PLTTFELY+EIK ARSSIH MR +L+KLSNVN+ TLE++TALLL
Sbjct: 207 VDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLL 266

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS--SSKNMEPATPHGE 239
           R         MD+ SLAMEMAPVIMW+++ +PE YR+YW   SRS   S + E ATP   
Sbjct: 267 R---------MDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETATP--- 314

Query: 240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
           WD+L+DE E  DASS+IPLDD   +DFGA+EVVQCL+E HNAIFTDA ETVWR
Sbjct: 315 WDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
TAIR|locus:2151611	376	AT5G61530 "AT5G61530" [Arabido	0.986	0.765	0.747	7.3e-114
MGI|MGI:1332637	1501	Arhgap5 "Rho GTPase activating	0.671	0.130	0.307	5.6e-16
FB|FBgn0036257	476	RhoGAP68F "Rho GTPase activati	0.647	0.397	0.284	5.7e-16
UNIPROTKB|D4A814	312	D4A814 "Uncharacterized protei	0.541	0.506	0.290	8.2e-15
UNIPROTKB|E1BM23	1420	LOC539086 "Uncharacterized pro	0.678	0.139	0.296	3.2e-14
UNIPROTKB|E2RED4	1503	ARHGAP5 "Uncharacterized prote	0.678	0.131	0.296	3.5e-14
DICTYBASE|DDB_G0290873	873	gacJJ "RhoGAP domain-containin	0.537	0.179	0.309	4.8e-14
UNIPROTKB|Q13017	1502	ARHGAP5 "Rho GTPase-activating	0.678	0.131	0.296	4.8e-14
UNIPROTKB|F1NG56	1142	ARHGAP5 "Uncharacterized prote	0.681	0.174	0.288	1.4e-13
UNIPROTKB|A4GT58	439	ARHGAP1 "Cdc42 GTPase-activati	0.541	0.359	0.278	1.7e-13

TAIR|locus:2151611 AT5G61530 "AT5G61530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 219/293 (74%), Positives = 253/293 (86%)

Query:     2 FLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQ 61
             F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQ
Sbjct:    87 FVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQ 146

Query:    62 RQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121
             RQ+  +P+P ILVKCADYL+L+GLNS  LFKAEGD+K+IQ LVS YNQDP AS+PEGVNP
Sbjct:   147 RQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNP 206

Query:   122 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
              DVAAL KYYLASLP PLTTFELY+EIK ARSSIH MR +L+KLSNVN+ TLE++TALLL
Sbjct:   207 VDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLL 266

Query:   182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKN--MEPATPHGE 239
             RVSQKSLLNKMD+ SLAMEMAPVIMW+++ +PE YR+YW   SRS  K+   E ATP   
Sbjct:   267 RVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETATP--- 323

Query:   240 WDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 292
             WD+L+DE E  DASS+IPLDD   +DFGA+EVVQCL+E HNAIFTDA ETVWR
Sbjct:   324 WDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

GO:0005100 "Rho GTPase activator activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

MGI|MGI:1332637 Arhgap5 "Rho GTPase activating protein 5" [Mus musculus (taxid:10090)]

 Score = 214 (80.4 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 67/218 (30%), Positives = 111/218 (50%)

Query:     9 ETKDKVAVGKI-KVEEAAKKTAQKSKTILTDIER-WQKGVASTDVFGVPIEVTVQRQQYG 66
             E  DK    K  KV+E  KK  +K+KT      R W+     ++ FG+P++  V  +   
Sbjct:  1220 EVDDKKIKKKTHKVKED-KKQKKKTKTFNPPTRRNWE-----SNYFGMPLQDLVTAE--- 1270

Query:    67 KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN---ASLPEGVNPFD 123
             KP+P  + KC +++  +GL ++ L++  G+K    ++   ++QD N   AS+   VN   
Sbjct:  1271 KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLASMEVTVNA-- 1328

Query:   124 VAALAKYYLASLPEPLTTFELYDEI-KGAR-----SSIHAMRNTLKKLSNVNFMTLEYVT 177
             VA   K + A LP+PL  + L+ E+ + A+        HA++  +KK   VN+    YV 
Sbjct:  1329 VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERFHALKEIVKKFHPVNYDVFRYVI 1388

Query:   178 ALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
               L RVSQ++ +N M A +L++   P +M       EF
Sbjct:  1389 THLNRVSQQNKINLMTADNLSICFWPTLMRPDFENREF 1426

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IMP

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IMP

GO:0030879 "mammary gland development" evidence=IMP

GO:0042169 "SH2 domain binding" evidence=ISO

FB|FBgn0036257 RhoGAP68F "Rho GTPase activating protein at 68F" [Drosophila melanogaster (taxid:7227)]

 Score = 212 (79.7 bits), Expect = 5.7e-16, P = 5.7e-16
 Identities = 56/197 (28%), Positives = 95/197 (48%)

Query:    20 KVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADY 79
             K+  + K +     + +    + Q  +A+T  FGVP++  V        +P I+ KC D 
Sbjct:   242 KLNPSRKPSTPPPSSNINASRQQQHKMATTHQFGVPLKFIVMNSPCLNSIPPIVRKCVDS 301

Query:    80 LVLSG-LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEP 138
             L ++G ++++ +F+  G+   I  L    N+  +  L + VN   +A L K +L  L EP
Sbjct:   302 LSITGVIDTEGIFRRSGNHSEIMALKERVNRGEDVDL-KSVNVHVIAGLLKSFLRDLAEP 360

Query:   139 LTTFELYDEIKGARS--SIHAMRNTLK----KLSNVNFMTLEYVTALLLRVSQKSLLNKM 192
             L TFELY+++ G          RN  +    KL   N+   +Y+   L+RV     LNKM
Sbjct:   361 LLTFELYEDVTGFLDWPKEERSRNVTQLIREKLPEENYELFKYIVEFLVRVMDCEDLNKM 420

Query:   193 DARSLAMEMAPVIMWQK 209
              + +LA+   P  +W +
Sbjct:   421 TSSNLAIVFGPNFLWSR 437

GO:0005100 "Rho GTPase activator activity" evidence=ISS;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007370 "ventral furrow formation" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

UNIPROTKB|D4A814 D4A814 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 50/172 (29%), Positives = 89/172 (51%)

Query:    44 KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 103
             K    ++ FGVP+   V  +   KP+P  + +C +Y+  +GL+++ +++  G+K  ++ L
Sbjct:    77 KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESL 133

Query:   104 VSMYNQDPNASLPEG---VNPFDVAALAKYYLASLPEPLTTFELY-D-----EIKGARSS 154
                ++QD N  L E    VN   VA   K + + LP+PL  + +  D     +IK     
Sbjct:   134 QRQFDQDHNLGLAEKDFTVNT--VAGAMKSFFSELPDPLVPYSMQIDLVEAHKIKDREQK 191

Query:   155 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
             +HA++  LKK    N    +YV + L RVS  + +N M + +L++   P +M
Sbjct:   192 LHALKEVLKKFPKENHEVFKYVISHLNRVSHNNKVNLMTSENLSICFWPTLM 243

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E1BM23 LOC539086 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 207 (77.9 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 64/216 (29%), Positives = 108/216 (50%)

Query:     9 ETKDKVAVGKI-KVEEAAKKTAQKSKTILTDIER-WQKGVASTDVFGVPIEVTVQRQQYG 66
             E  DK    K  KV+E  KK  +K+K       R W+     ++ FG+P++  V  +   
Sbjct:  1139 ELDDKKMKKKTHKVKED-KKQKKKTKNFNPPTRRNWE-----SNYFGMPLQDLVTAE--- 1189

Query:    67 KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVA 125
             KP+P  + KC +++  +GL ++ L++  G+K    ++   ++QD N SL    V    VA
Sbjct:  1190 KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNISLVSMEVTVNAVA 1249

Query:   126 ALAKYYLASLPEPLTTFELYDEI-KGAR-----SSIHAMRNTLKKLSNVNFMTLEYVTAL 179
                K + A LP+PL  + L+ E+ + A+       +HA++  +KK   VN+    Y+   
Sbjct:  1250 GALKAFFADLPDPLIPYSLHPELLEAAKILDKAERLHALKEIVKKFHPVNYDVFRYIITH 1309

Query:   180 LLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
             L RVSQ + +N M A +L++   P +M       EF
Sbjct:  1310 LNRVSQHNKVNLMTADNLSICFWPTLMRPDFENREF 1345

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E2RED4 ARHGAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 207 (77.9 bits), Expect = 3.5e-14, P = 3.5e-14
 Identities = 64/216 (29%), Positives = 110/216 (50%)

Query:     9 ETKDKVAVGKI-KVEEAAKKTAQKSKTILTDIER-WQKGVASTDVFGVPIEVTVQRQQYG 66
             E  DK    K  KV+E  KK  +K+K       R W+     ++ FG+P++  V  +   
Sbjct:  1222 ELDDKKMKKKTHKVKED-KKQKKKTKNFNPPTRRNWE-----SNYFGMPLQDLVTAE--- 1272

Query:    67 KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVA 125
             KP+P  + KC +++  +GL ++ L++  G+K    ++   ++QD + SL    V    VA
Sbjct:  1273 KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHSISLVSMEVTVNAVA 1332

Query:   126 ALAKYYLASLPEPLTTFELYDEI-KGAR-----SSIHAMRNTLKKLSNVNFMTLEYVTAL 179
                K + A LP+PL  + L+ E+ + A+       +HA++  +KK   VN+   +YV   
Sbjct:  1333 GALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFKYVITH 1392

Query:   180 LLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
             L RVSQ++ +N M A +L++   P +M       EF
Sbjct:  1393 LNRVSQQNKINLMTADNLSICFWPTLMRPDFENREF 1428

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

DICTYBASE|DDB_G0290873 gacJJ "RhoGAP domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 204 (76.9 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 52/168 (30%), Positives = 86/168 (51%)

Query:    51 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
             VFGVPIE TV        +P ++++  DY+    ++   +F+  G    I+   + Y++ 
Sbjct:   425 VFGVPIEKTVSGNN---EIPAVVLQTIDYIEKKAMDIVGIFRLSGSVLTIEQWKAKYDKG 481

Query:   111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARS------SIHAMRNTLKK 164
                 L + V+P  VA L K YL  LP+PL T+E YD    A+S       I  +++ +K 
Sbjct:   482 EKVDLFQEVDPHAVAGLLKLYLRELPDPLLTYEKYDNFIAAQSIDDFPSRIKLIKHLVKS 541

Query:   165 LSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 212
             L  VN+  L Y+ A + +V+  S  NKM   +L+    P ++  K+R+
Sbjct:   542 LPPVNYAVLSYLMAFVGKVATHSAANKMQVHNLSTVFGPNLI--KDRQ 587

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|Q13017 ARHGAP5 "Rho GTPase-activating protein 5" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 64/216 (29%), Positives = 108/216 (50%)

Query:     9 ETKDKVAVGKI-KVEEAAKKTAQKSKTILTDIER-WQKGVASTDVFGVPIEVTVQRQQYG 66
             E  DK    K  KV+E  KK  +K+K       R W+     ++ FG+P++  V  +   
Sbjct:  1221 ELDDKKMKKKTHKVKED-KKQKKKTKNFNPPTRRNWE-----SNYFGMPLQDLVTAE--- 1271

Query:    67 KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVA 125
             KP+P  + KC +++  +GL ++ L++  G+K    ++   ++QD N +L    V    VA
Sbjct:  1272 KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVA 1331

Query:   126 ALAKYYLASLPEPLTTFELYDEI-KGAR-----SSIHAMRNTLKKLSNVNFMTLEYVTAL 179
                K + A LP+PL  + L+ E+ + A+       +HA++  +KK   VN+    YV   
Sbjct:  1332 GALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITH 1391

Query:   180 LLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
             L RVSQ+  +N M A +L++   P +M       EF
Sbjct:  1392 LNRVSQQHKINLMTADNLSICFWPTLMRPDFENREF 1427

GO:0005525 "GTP binding" evidence=IEA

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=TAS

GO:0005100 "Rho GTPase activator activity" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0007266 "Rho protein signal transduction" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=TAS

UNIPROTKB|F1NG56 ARHGAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 62/215 (28%), Positives = 103/215 (47%)

Query:     9 ETKDKVAVGKIKVEEAAKKTAQKSKTILTDIER-WQKGVASTDVFGVPIEVTVQRQQYGK 67
             E  DK    K +  +  KK  +K KT    I R W+     ++ FG+P++  V  +   K
Sbjct:   860 ELDDKKTKKKTQKVKEDKKQKKKVKTFNPPIRRNWE-----SNYFGMPLQDLVTSE---K 911

Query:    68 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVAA 126
             P+P  + KC  ++  +GL ++ L++  G+K    ++   ++QD + SL    V    VA 
Sbjct:   912 PIPLFVEKCVQFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHSISLESMEVTVNAVAG 971

Query:   127 LAKYYLASLPEPLTTFELYDEIKGARS------SIHAMRNTLKKLSNVNFMTLEYVTALL 180
               K + A LP+PL  + L+ E+  A         +H ++  +KK   VN+   +YV   L
Sbjct:   972 ALKAFFADLPDPLIPYSLHQELLEASKILDKTERLHELKEIVKKFHPVNYDVFKYVITHL 1031

Query:   181 LRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
              RVSQ+   N M A +L++   P +M       EF
Sbjct:  1032 NRVSQQYKTNFMTADNLSICFWPTLMRPDFENREF 1066

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

UNIPROTKB|A4GT58 ARHGAP1 "Cdc42 GTPase-activating protein" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 46/165 (27%), Positives = 82/165 (49%)

Query:    52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
             FGV ++   ++     P+P +L +   YL    L ++ +F+   + +V++ +   YN   
Sbjct:   242 FGVSLQHLQEKNPEQDPIPLVLRETIAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGL 301

Query:   112 NASLPEGVNPFDV-AALAKYYLASLPEPLTTFELYDEIKG-----ARSSIHAMRNTLKKL 165
                  +  N   + A + K +L  LPEPL TF+LY  + G         + A    L+ L
Sbjct:   302 PVDFDQ-YNDLHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVEATLQVLRTL 360

Query:   166 SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
                N+  L ++TA L+++S +S LNKM   +LA+   P ++W K+
Sbjct:   361 PEENYQVLRFLTAFLVQISAQSELNKMTNTNLAVVFGPNLLWAKD 405

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E875	RGAP1_ARATH	No assigned EC number	0.7474	0.9863	0.7659	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.86.332.1 hypothetical protein (377 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	1e-38
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	1e-35
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	1e-32
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	6e-24
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	7e-20
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	1e-19
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	2e-18
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	3e-17
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	3e-15
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	9e-15
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	1e-14
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	2e-14
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	3e-14
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	6e-14
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	9e-14
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	9e-14
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	9e-14
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	1e-13
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	5e-13
cd04396	225	cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho	3e-12
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	3e-12
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	8e-12
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	2e-11
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	2e-11
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	2e-11
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	3e-11
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	4e-11
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	1e-10
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	1e-10
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	4e-10
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	4e-10
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	2e-08
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	6e-08
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	7e-07
cd04397	213	cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas	7e-07
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	6e-05
cd04380	220	cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas	8e-05
cd04399	212	cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPas	2e-04
cd04388	200	cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac	2e-04

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  133 bits (336), Expect = 1e-38
 Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 7/147 (4%)

Query: 70  PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLPEGVNPFDVAALA 128
           P I+ KC ++L   GL+++ +F+  G    I+ L   ++   +     E  +   VA+L 
Sbjct: 1   PLIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60

Query: 129 KYYLASLPEPLTTFELYDEIKGARSS------IHAMRNTLKKLSNVNFMTLEYVTALLLR 182
           K +L  LPEPL TFELY+E   A  S      + A+R  L+KL   N  TL Y+ A L R
Sbjct: 61  KLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALRELLRKLPPANRDTLRYLLAHLNR 120

Query: 183 VSQKSLLNKMDARSLAMEMAPVIMWQK 209
           V+Q S +NKM+A +LA+   P ++   
Sbjct: 121 VAQNSEVNKMNAHNLAIVFGPTLLRPP 147

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score =  125 bits (317), Expect = 1e-35
 Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 70  PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 129
           P I+ KC +YL  +GLN++ +F+  G    I+ L   +++  +    E  +  DVA+L K
Sbjct: 1   PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLK 60

Query: 130 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRV 183
            YL  LPEPL  FELYDE             I A++  LK L   N   L+Y+  LL ++
Sbjct: 61  LYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKI 120

Query: 184 SQKSLLNKMDARSLAMEMAPVIMWQKE 210
           SQ S +NKM A +LA+  AP ++   +
Sbjct: 121 SQNSEVNKMTASNLAIVFAPTLLRPPD 147

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score =  118 bits (297), Expect = 1e-32
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%)

Query: 67  KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL-PEGVNPFDVA 125
           KP+P I+ KC +YL   GL+++ +++  G K  ++ L   ++  P+  L     +  DVA
Sbjct: 1   KPIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVA 60

Query: 126 ALAKYYLASLPEPLTTFELYDEIKGARSS------IHAMRNTLKKLSNVNFMTLEYVTAL 179
            L K +L  LPEPL T+ELY+E   A         + A+R  L  L   N  TL Y+ A 
Sbjct: 61  GLLKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAH 120

Query: 180 LLRVSQKSLLNKMDARSLAMEMAPVIMW 207
           L RV++ S  NKM AR+LA+   P ++ 
Sbjct: 121 LNRVAEHSEENKMTARNLAIVFGPTLLR 148

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 95.9 bits (239), Expect = 6e-24
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 5/166 (3%)

Query: 49  TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 108
           T  FGV ++   ++    +P+P ++ +  +YL    L ++ +F+   + +V++ +   YN
Sbjct: 3   TQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYN 62

Query: 109 QDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTLK 163
                   +  +    A + K +L  LPEPL TF+LYD+I G  +      +  ++  L+
Sbjct: 63  MGEPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQ 122

Query: 164 KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQK 209
            L   N+  L+Y+   L++VS  S  NKM   +LA+   P ++W K
Sbjct: 123 TLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAK 168

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score = 85.2 bits (211), Expect = 7e-20
 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 16/200 (8%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGD----KKVIQHLVSM 106
           VFG P+E  ++R   G+ +   +  C   L+ +G+N + LF+  G     K++   L + 
Sbjct: 4   VFGTPLEEHLKRT--GREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAG 61

Query: 107 YNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSIHAMRN 160
               P        +P  VA+  K YL  LP+PL T+ LY++             + A+  
Sbjct: 62  TFSLPLD--EFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWR 119

Query: 161 TLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYW 220
            L KL   N   L Y+   L +++QKS  NKM   ++A+ +AP ++W K           
Sbjct: 120 ILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAG 179

Query: 221 NHASRSSSKNMEPATPHGEW 240
              S      +E    H +W
Sbjct: 180 T--SVHVVAIVELIISHADW 197

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score = 84.0 bits (208), Expect = 1e-19
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 19/169 (11%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGVP+E  + R+  G  VP+I+ +C   +   GLN + +++  G+   +  L  ++++DP
Sbjct: 1   FGVPLEDLILRE--GDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDP 58

Query: 112 NASLPEGVNPFD-----VAALAKYYLASLPEPLTTFELYDEIKGA---------RSSIHA 157
              L      ++     VA+L K +   LPEPL T  L  E   A         R ++H 
Sbjct: 59  LNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHG 118

Query: 158 MRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
           + N    L + N+ TL  +   L R+ +   +N+M   +LA+   P +M
Sbjct: 119 LIN---DLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLM 164

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 81.0 bits (200), Expect = 2e-18
 Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGVP+   V  +   KP+P  L KC +++  +GL ++ +++  G+K  +  L   ++QD 
Sbjct: 1   FGVPLANVVTSE---KPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDH 57

Query: 112 NASLPEGVNPFDVAALA-KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKK 164
           N  L       +  A A K + + LP+PL  + ++ E+  A         +HA++  LKK
Sbjct: 58  NLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKK 117

Query: 165 LSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
               NF   +YV   L +VSQ S +N M + +L++   P +M     +P+F
Sbjct: 118 FPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM-----RPDF 163

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 77.5 bits (191), Expect = 3e-17
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 9/162 (5%)

Query: 52  FGVPIEVTVQRQQY--GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQ 109
           FG  + + V+R +   G  +P +  +C DY+   G+  + ++K  G K  +  L + YN+
Sbjct: 1   FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNR 60

Query: 110 DPNASLPEGVNPFDVAALAKYYLASLPEPLTTFEL---YDEIKGARS---SIHAMRNTLK 163
             + +L E   P  VA+L K YL  LPEPL T EL   ++E  G  +       ++  LK
Sbjct: 61  RESPNLEE-YEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLK 119

Query: 164 KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 205
           +L   N + L ++   +  V  + L  KM+ +++++ ++P +
Sbjct: 120 ELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTV 161

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 36/200 (18%)

Query: 51  VFGVPIE--VTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 108
            FGVP++         Y   VP I+  C + +   GL +  +++  G+   I  L    N
Sbjct: 1   TFGVPLDDCPPSSENPY---VPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELN 57

Query: 109 Q---DPNASLP--EGVNPFDVAALAKYYLASLPEPLTTFELY------DEIKGARSSIHA 157
           +   D +   P    VN   V++L K +   LPEPL T ELY      + I+     +  
Sbjct: 58  RGGFDIDLQDPRWRDVNV--VSSLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKE 115

Query: 158 MRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYR 217
           +R  +  L + ++ TL+++   L  V+  S +NKM+ R+LA+   P ++           
Sbjct: 116 LRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLV----------- 164

Query: 218 QYWNHASRSSSKNMEPATPH 237
                  R+S  NME    H
Sbjct: 165 -------RTSDDNMETMVTH 177

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 70.8 bits (173), Expect = 9e-15
 Identities = 41/146 (28%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 67  KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA 126
           + VP ++ K  +Y+ + GL ++ +++  G    I+ L    + D N+   +  N   +A+
Sbjct: 13  RSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIAS 72

Query: 127 LAKYYLASLPEPLTTFELYDE------IKGARSSIHAMRNTLKKLSNVNFMTLEYVTALL 180
           + K +L  LP PL TFELY+E      ++  R ++  + + + +LS  +  TLE +   L
Sbjct: 73  VFKQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHL 132

Query: 181 LRVSQKSLLNKMDARSLAMEMAPVIM 206
           +R++ +   N+M A +LA+  AP I+
Sbjct: 133 VRIALQEETNRMSANALAIVFAPCIL 158

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 55/234 (23%)

Query: 67  KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA 126
           + VP ++  C  +L   GL +  +F+    KK ++ L   +++  +  L E  +  DVAA
Sbjct: 7   RQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAA 66

Query: 127 LAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTLKKLSNVNFMTLEYVTALLL 181
           L K +   +P+PL   ELY    G         + A++  +  L   N  TL  +   L 
Sbjct: 67  LLKEFFRDMPDPLLPRELYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLH 126

Query: 182 RVSQKS---------LL--NKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKN 230
            V++ +          +  NKM + +LA    P ++               H  +S  + 
Sbjct: 127 TVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLL---------------HKQKSGERE 171

Query: 231 MEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFT 284
              A            S  ++ S+AI            I VVQ +++ +  +F 
Sbjct: 172 FVQA------------SLRIEESTAI------------INVVQTMIDNYEELFM 201

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 18/178 (10%)

Query: 51  VFGVPIEVTVQ-RQQYG-KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 108
           VFG  +E TV   +++G + VP ++ +C D++   GL  + LF+  G   +++ L   ++
Sbjct: 2   VFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFD 61

Query: 109 QDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELY------------DEIKGARSSIH 156
                S     +   VA+L K YL  LPEP+  +  Y            DE KG      
Sbjct: 62  AGERPSFDSDTDVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGE--- 118

Query: 157 AMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
            +   +  L  VN+  L Y+   L  V   S +NKM  ++LA    P I+  K   P 
Sbjct: 119 -LMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVEDPA 175

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 24/176 (13%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMY-NQD 110
           FGV      +       VP I+ KC   +    L  Q +++  G K  ++ L   + N  
Sbjct: 1   FGVDFSQVPRDFPDE--VPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGK 58

Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKG-ARSS--------------- 154
               L E ++P D++++ K +L  LPEPL  F LY++    A+                 
Sbjct: 59  DLVELSE-LSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIE 117

Query: 155 ----IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
               I  +++ L++L   N+ TL+++ A L RV+++   NKM   +L +   P ++
Sbjct: 118 VNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLI 173

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 68.7 bits (168), Expect = 6e-14
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 20/157 (12%)

Query: 69  VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMY-NQDPNASLPEGVNPFDVAAL 127
           VP ++V+C   +    L  Q +++  G K  ++ L   + N      L  G +P D+ ++
Sbjct: 16  VPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDL-SGHSPHDITSV 74

Query: 128 AKYYLASLPEPLTTFELYDE-IKGAR-----------------SSIHAMRNTLKKLSNVN 169
            K++L  LPEP+  F+LYD+ I  A+                 + I +++  L +L   N
Sbjct: 75  LKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSN 134

Query: 170 FMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
           + TL ++ A L RV+++   NKM   +L +   P ++
Sbjct: 135 YNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLL 171

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score = 67.7 bits (166), Expect = 9e-14
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 59  TVQRQQYGK-PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-NASLP 116
            ++ QQ     +P I+ KC D++   GL S+ +++  G    ++ L+  + +D  +  L 
Sbjct: 4   ALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLR 63

Query: 117 EG-VNPFDVAALAKYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKLSNVN 169
           EG     DVA + K +L  LP+PL T EL+       E++     I   +  +++L  +N
Sbjct: 64  EGEYTVHDVADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPIN 123

Query: 170 FMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQ 218
             TL+ +   L RV + S  N+M   +LA+   P +    E        
Sbjct: 124 RATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEHSVGQTSH 172

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 68.6 bits (168), Expect = 9e-14
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           VFGVP+ V +QR   G+P+P  + +   +L  + L+   LF+  G K  IQ L SM    
Sbjct: 4   VFGVPLLVNLQR--TGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESS 61

Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKK 164
            +    +G   +DVA + K Y   LPEPL T +L +      +       + A++  +  
Sbjct: 62  TDNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILL 121

Query: 165 LSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203
           L + N   L+ +   L  V+  S  N+M A +LA+ +AP
Sbjct: 122 LPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score = 67.8 bits (166), Expect = 9e-14
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 9/161 (5%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGV +          + VP +L K  +++ + GL ++ +++  G    I+ L    + DP
Sbjct: 1   FGVSLSSLTSED---RSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDP 57

Query: 112 NASLPEGVNPFDVAALAKYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKL 165
           ++   E      + ++ K +L  LPEPL TFELY+      E++  +  + A+ + L++L
Sbjct: 58  DSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQL 117

Query: 166 SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
              N  TLE +   L+RV+ +  +N+M A +LA+  AP I+
Sbjct: 118 PRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCIL 158

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 16/166 (9%)

Query: 51  VFGVPIEVTVQRQ--QYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 108
           VFGVP+         +YG  VP  LV    +L L  L+++ LF+  G     + L +   
Sbjct: 1   VFGVPLHSLPHSTVPEYGN-VPKFLVDACTFL-LDHLSTEGLFRKSGSVVRQKELKAKLE 58

Query: 109 QDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYD------EIKGARSSIHA--MRN 160
                       P DVA L K +   LPEPL  ++L++      E+        A  +  
Sbjct: 59  GGEACL--SSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLT 116

Query: 161 TLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
            L    +VN  TL Y  + L  V+Q+   NKMD+ +LA+  AP + 
Sbjct: 117 CLLPDEHVN--TLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLF 160

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 65.9 bits (161), Expect = 5e-13
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           VFGVP++   Q  Q    VP ++    +YL   GL  + LF+  G+ + ++ L    +  
Sbjct: 2   VFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSG 61

Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTT-------FELYDEIKGARSSIHAMRNTLK 163
               L +  +    A+L + +L  LPE L          +LY +  G       +R+ L+
Sbjct: 62  EEVDLSKEADVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQ 121

Query: 164 KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 205
           +L  VN+  L+++   L  V+ +   N+M A +LA    P +
Sbjct: 122 QLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDV 163

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 41/196 (20%)

Query: 51  VFGVPIE---------VTVQRQ-----QYGKPVPHILVKCADYLVLSGLNSQFLFKAEGD 96
           VFGV +E         +++  +      YG  +P ++ KC  YL  +    + +F+  G 
Sbjct: 1   VFGVSLEESLKYASVAISIVDEDGEQYVYGY-IPVVVAKCGVYLKENATEVEGIFRVAGS 59

Query: 97  KKVIQHLVSMYNQDPN--ASLP-EGVNPFDVAALAKYYLASLPEPLTTFELYDE----IK 149
            K I+ L  +++  P+   S   +G    D A++ + YL +LPEPL   +LY+E    ++
Sbjct: 60  SKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLR 119

Query: 150 GARSSIHAMRNTLKK-------------------LSNVNFMTLEYVTALLLRVSQKSLLN 190
                +  M+  + +                   L N+N   L Y+  LL   ++ S  N
Sbjct: 120 KRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKN 179

Query: 191 KMDARSLAMEMAPVIM 206
            M A +LA    P I+
Sbjct: 180 LMTASNLAAIFQPGIL 195

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 225

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score = 63.5 bits (154), Expect = 3e-12
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 9/161 (5%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGV +      +     VP +L K  +++ + GL ++ +++  G    ++ L  +   DP
Sbjct: 1   FGVRVGSLTSNKT---SVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADP 57

Query: 112 NASLPEGVNPFDVAALAKYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKL 165
                E      +  L K +L  LPEPL TF  Y+      E+   +  + A+   L++L
Sbjct: 58  ENVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQL 117

Query: 166 SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
              N  TLE +   L++V+ +  +N+M   +LA+  AP ++
Sbjct: 118 PTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLL 158

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 62.9 bits (153), Expect = 8e-12
 Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 22/196 (11%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGVP+   V+R+   + VP +L KC   +   GL+   L++  G     + L   + ++ 
Sbjct: 1   FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNS 60

Query: 112 NA-SLPEGVNPFDV---AALAKYYLASLPEPLTTFELYDEIKGARS---------SIHAM 158
            A  L E + P D+     + K YL  LPEPL T +LY+ +  A +         + H  
Sbjct: 61  AAVELSEELYP-DINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLT 119

Query: 159 RNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQ 218
            + +  L      TL  +   L  V   S  NKM  ++LA+   PV+M        F  Q
Sbjct: 120 LSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLM--------FCSQ 171

Query: 219 YWNHASRSSSKNMEPA 234
            ++    S +  M   
Sbjct: 172 EFSRYGISPTSKMAAV 187

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 6/90 (6%)

Query: 124 VAALAKYYLASLPEPLTTFELYDEIKGARSS------IHAMRNTLKKLSNVNFMTLEYVT 177
           +A++ K +L ++P  L + +LY+E   A         I  ++  L KL   N + L+++ 
Sbjct: 69  LASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLI 128

Query: 178 ALLLRVSQKSLLNKMDARSLAMEMAPVIMW 207
            +L  +SQ S  NKMDA +LA+ +AP ++W
Sbjct: 129 CVLHNISQNSETNKMDAFNLAVCIAPSLLW 158

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 30/183 (16%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FG       ++   G  +P I+ KC   +    L  + +++  G K  ++ L   +    
Sbjct: 1   FGADFAQVAKKSPDG--IPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGK 58

Query: 112 NASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKG-ARSSIHA------------- 157
           +      ++P D++ + K YL  LPEPL  F LY+E  G A+ S H              
Sbjct: 59  DLVELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKK 118

Query: 158 --------------MRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203
                          ++ L++L   N+ TL+++   L RVS+++  NKM A +L +   P
Sbjct: 119 WPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGP 178

Query: 204 VIM 206
            ++
Sbjct: 179 TLI 181

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 20/166 (12%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCA----DYLVLSGLNSQFLFKAEGDKKVIQHLVSM 106
           VFG   ++T      G+ VP +L  C      + ++ G+     ++  G    IQ L   
Sbjct: 2   VFG--CDLTEHLLNSGQDVPQVLKSCTEFIEKHGIVDGI-----YRLSGIASNIQRLRHE 54

Query: 107 YN--QDPNASLPEGV-NPFDVAALAKYYLASLPEPLTTFELYDEIKGARSS------IHA 157
           ++  Q P+ +    + +   V++L K Y   LP PL T++LY++   A S+      +  
Sbjct: 55  FDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEK 114

Query: 158 MRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203
           + + +++L   ++ TLE++   L R+++   +  M A++LA+  AP
Sbjct: 115 IHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAP 160

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 51  VFGVPIEVTVQ---RQQYGKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQHLVSM 106
           +FG P+E  V+    +  G+ +P ++ +C +YL  +  +  + +F+  G   VI+ L   
Sbjct: 1   IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKER 60

Query: 107 YNQDPNASLPEGVNPFD---VAALAKYYLASLPEPLTT------FELYDEIKGARSS-IH 156
           +N + +  L       D   VA L K YL  LP  +        F+   E    RS    
Sbjct: 61  FNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRAL 120

Query: 157 AMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203
            +++ + +L   N+  L  + + L ++ + S +NKM+ R++ +  +P
Sbjct: 121 ELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSP 167

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 52  FGVPIEVTVQRQQYGKP---VPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMY 107
           FG  +E  + RQ+   P   +P IL   ++ ++ L G  ++ +F+  GD   +  L    
Sbjct: 1   FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRV 60

Query: 108 NQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSN 167
           +Q  +  L    +P   A+L K +L  L EPL    LY +   A          ++KL  
Sbjct: 61  DQ-WDYPLSGLEDPHVPASLLKLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPI 119

Query: 168 VNFMTLEYVTALLLRVSQKSLL--NKMDARSLAMEMAPVIM 206
           +N + L Y+   L   +Q   +   KMD  +LAM  AP I+
Sbjct: 120 INRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNIL 160

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 16/166 (9%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGV I    +R++    VP+I+ +C + +   G+    +++  G    IQ L + ++ + 
Sbjct: 1   FGVKISTVTKRER--SKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTN- 57

Query: 112 NASLPEGVNPFDVAALA---KYYLASLPEPLTTFELYDEIKG--------ARSSIHAMRN 160
           N  +   ++  DV A+A   K Y   LPEPL T ELY             A+ S   M N
Sbjct: 58  NKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIALSDPVAKES--CMLN 115

Query: 161 TLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
            L  L + N +T  ++   L RV+++  +NKM   +LA    P ++
Sbjct: 116 LLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLL 161

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 15/169 (8%)

Query: 56  IEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD-PNAS 114
            ++T   + +    P ++  C   +   GL S+ L++  G  + I+ +   +++D   A 
Sbjct: 3   CDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKAD 62

Query: 115 LPEGVNPFDVAALA---KYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKL 165
           +   V P D+  +    K Y   LP P+ T++ Y       +I      + A+   L  L
Sbjct: 63  ISATVYP-DINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLL 121

Query: 166 SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
              ++ TL Y+   L RV+     NKM+A +L +   P +M    R PE
Sbjct: 122 PPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLM----RPPE 166

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 19/173 (10%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FG  +E   QR+     VP  +  C + +   GL+   +++  G+  VIQ L    + D 
Sbjct: 1   FGCHLEALCQRE--NSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDE 58

Query: 112 NASLPEGVNPFDV----AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNT 161
              L +     D+     AL K +   LPEPL  + L+++   A         + A+++ 
Sbjct: 59  KLDLDDSKWE-DIHVITGAL-KLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDL 116

Query: 162 LKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
           +K L   N  TL+ +   L RV +    N+M  ++LA+   P ++     +PE
Sbjct: 117 IKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLL-----RPE 164

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 14/149 (9%)

Query: 75  KCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFD-------VAAL 127
           KC + +   G+N Q L++  G    +Q L+S+   DP  S P  V+  +       + + 
Sbjct: 34  KCIEAVETRGINEQGLYRVVGVNSKVQKLLSLG-LDPKTSTPGDVDLDNSEWEIKTITSA 92

Query: 128 AKYYLASLPEPLTTFELYDE-IKGARSS-----IHAMRNTLKKLSNVNFMTLEYVTALLL 181
            K YL +LPEPL T+EL+++ I  A+S      ++A+ + + KL   N   LE +   L 
Sbjct: 93  LKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLT 152

Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
            VS  S  N M   +L +   P ++  +E
Sbjct: 153 NVSDHSKKNLMTVSNLGVVFGPTLLRPQE 181

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 63  QQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN--QDPNASLPEGVN 120
           Q  G+ +P ++  C  ++ L GL  Q +F+  G +  +  + + +   +DP A      +
Sbjct: 12  QDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHD 71

Query: 121 PFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSIHAMRNTLKKLSNVNFMTLE 174
              VA + K Y   L  PL   E +++      ++     +H +R  L  L     + + 
Sbjct: 72  INSVAGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMR 131

Query: 175 YVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK-PEFYRQYWN 221
           Y+ A L  +SQ S  N MD  +LA+   P +M   E +     + + N
Sbjct: 132 YLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEGQDQVSCQAHVN 179

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 85  LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG-VNPFDVAALAKYYLASLPEPLTT-- 141
           L  + LF+  G+    Q L  + N   +  L  G  +  D A + K +L  LPEPL T  
Sbjct: 24  LRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLGELPEPLLTHA 83

Query: 142 -FELYDEI--------KGARSS-------IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQ 185
            +  + +I        KG ++S       + A++  L  L   N   L+ +  LL + ++
Sbjct: 84  HYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAK 143

Query: 186 KSLLNKMDARSLAMEMAPVIMWQKERKPE 214
               NKM A +LA+   P ++  +   PE
Sbjct: 144 HEDKNKMSADNLALLFTPHLICPRNLTPE 172

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 37/177 (20%)

Query: 51  VFGVPIEVTVQRQQYGKP---VPHILVKCADYLVLSGLNSQFLFKAEGD----KKVIQHL 103
           +FGVP+   ++R Q   P   VP I  K  + L   GL ++ + +  G     K + Q L
Sbjct: 1   LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQEL 60

Query: 104 VSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYD------EIKGARSSIHA 157
            + + +     L + V   D A+L K ++  LP+PL T E          +   +  + A
Sbjct: 61  EAKFYEGTF--LWDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQA 118

Query: 158 M-----------RNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203
           +           R+TLK L       LE+    L +V      NKM+  ++AM MAP
Sbjct: 119 LNLLVLLLPEANRDTLKAL-------LEF----LQKVVDHEEKNKMNLWNVAMIMAP 164

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 25/186 (13%)

Query: 52  FGVPIEVTVQRQQYG-----------KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVI 100
           FGVP+E+ V++  +G             +P ++      +    ++ + +F+  G+ + +
Sbjct: 1   FGVPLEILVEK--FGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRL 58

Query: 101 QHLVSMYNQDPNASLP-EGVNPFDVAALAKYYLASLPEPLTTFELYD------EIKGARS 153
           + L    +++P         NP  +AAL K +L  LP+PL TF+LY       +I+    
Sbjct: 59  KELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEE 118

Query: 154 SIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLL-----NKMDARSLAMEMAPVIMWQ 208
               +      L   +  T+E + + L  VS  S +     +KMD  +LA  + P I++ 
Sbjct: 119 RKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYS 178

Query: 209 KERKPE 214
           K   P 
Sbjct: 179 KTDNPN 184

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 213

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 7/144 (4%)

Query: 69  VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALA 128
           +P ++V C + +   GL  + L++  G ++ ++ L   + +         V+   +    
Sbjct: 17  IPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCL 76

Query: 129 KYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLR 182
           K +L SL EPL TF L+       EI    +S  A+   + +L   N  TL ++   L R
Sbjct: 77  KDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQR 136

Query: 183 VSQKSLLNKMDARSLAMEMAPVIM 206
           V+Q S   KMD  +LA    P I+
Sbjct: 137 VAQ-SPECKMDINNLARVFGPTIV 159

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 16/168 (9%)

Query: 69  VPHILVKCADYLVLSGLNSQFLFKAEGDK--------KVIQHLVSMYNQDPNASLPEGVN 120
           +P  + +  DYL   GL  + LF+  G          ++   L      D  +      +
Sbjct: 50  IPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDAL------DTGSPFNSPGS 103

Query: 121 PFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTL--KKLSNVNFMTLEYVTA 178
              VA     +L SLP+P+  + LY+ +  A ++    +  +    L  V+     Y+ +
Sbjct: 104 AESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLCS 163

Query: 179 LLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS 226
            L  +  +S    +D  +LA     V++    R     R+      R+
Sbjct: 164 FLRELLSESADRGLDENTLATIFGRVLLRDPPRAGGKERRAERDRKRA 211

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 118 GVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSS------------IHAMRNTLKKL 165
              P  VA++ K YL  LP+ L   ++YD I+   S+            I  +++TL +L
Sbjct: 75  KFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQL 134

Query: 166 SNVNFMTLEYVT---ALLLRVSQKSLLNKMDARSLAMEMAPVI 205
              +  TL+ +      L+ +++     +  A  LA  ++  I
Sbjct: 135 PKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATSLSREI 177

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 212

>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 18/158 (11%)

Query: 63  QQYGKP--VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVN 120
           +Q+  P   P +L+K  + +   GL S  L++ +    + +  +        AS+   + 
Sbjct: 7   EQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSSLTE--LRQILDCDAASVD--LE 62

Query: 121 PFDVAALA---KYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNV--------- 168
            FDVAALA   K YL  LP P+    +Y E+      + +     + L  +         
Sbjct: 63  QFDVAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQ 122

Query: 169 NFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
            ++TL+Y+     R+ Q S  N + AR+LA   +P++ 
Sbjct: 123 YWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLF 160

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	100.0
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	100.0
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	100.0
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	100.0
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	100.0
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	100.0
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	100.0
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	100.0
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	100.0
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	100.0
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	100.0
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	100.0
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	100.0
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	100.0
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	100.0
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	100.0
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	100.0
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	100.0
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	100.0
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	100.0
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	100.0
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	100.0
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	100.0
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	100.0
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	100.0
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	100.0
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	100.0
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	100.0
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	100.0
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	100.0
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	100.0
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	100.0
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	100.0
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	100.0
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	100.0
KOG4407	1973	consensus Predicted Rho GTPase-activating protein	100.0
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	100.0
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	100.0
KOG2200	674	consensus Tumour suppressor protein p122-RhoGAP/DL	100.0
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	100.0
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	100.0
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.98
KOG1450	650	consensus Predicted Rho GTPase-activating protein	99.98
KOG4269	1112	consensus Rac GTPase-activating protein BCR/ABR [S	99.98
KOG4270	577	consensus GTPase-activator protein [Signal transdu	99.97
KOG2710	412	consensus Rho GTPase-activating protein [Signal tr	99.96
KOG4406	467	consensus CDC42 Rho GTPase-activating protein [Sig	99.96
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	99.95
KOG1453	918	consensus Chimaerin and related Rho GTPase activat	99.94
KOG3564	604	consensus GTPase-activating protein [General funct	99.94
KOG1452	442	consensus Predicted Rho GTPase-activating protein	99.86
KOG4271	1100	consensus Rho-GTPase activating protein [Signal tr	99.81
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.8
KOG4724	741	consensus Predicted Rho GTPase-activating protein	99.8
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.77
KOG4370	514	consensus Ral-GTPase effector RLIP76 [Signal trans	99.25
KOG3565	640	consensus Cdc42-interacting protein CIP4 [Cytoskel	99.25
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	98.94
KOG4724	741	consensus Predicted Rho GTPase-activating protein	98.07
KOG1449	670	consensus Predicted Rho GTPase-activating protein	96.5
KOG1453	918	consensus Chimaerin and related Rho GTPase activat	96.41
KOG1449	670	consensus Predicted Rho GTPase-activating protein	95.92
KOG4271	1100	consensus Rho-GTPase activating protein [Signal tr	95.84

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=100.00  E-value=3.3e-45  Score=314.59  Aligned_cols=163  Identities=23%  Similarity=0.375  Sum_probs=148.1

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC-CCCC--CCCchhhhHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA  128 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~--~~~d~~~va~lL  128 (292)
                      ||+||+.+++++  +..||.++.+|++||+++|+.+|||||++|+..+++++++.+|+++. .++.  ...|+|+||++|
T Consensus         1 FG~~L~~~~~~~--~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL   78 (194)
T cd04372           1 YGCDLTTLVKAH--NTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGAL   78 (194)
T ss_pred             CCCChHHHHHHc--CCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHH
Confidence            999999999985  55999999999999999999999999999999999999999997543 3332  225899999999


Q ss_pred             HHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhc
Q 022764          129 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA  202 (292)
Q Consensus       129 K~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~  202 (292)
                      |.|||+||+||+|.++|+.|+++      .+++..++.++.+||+.|+.+|+||+.||++|+.|++.||||+.|||+|||
T Consensus        79 K~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~  158 (194)
T cd04372          79 KLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFG  158 (194)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHh
Confidence            99999999999999999999886      357889999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCChHHH
Q 022764          203 PVIMWQKERKPEFY  216 (292)
Q Consensus       203 P~Ll~~~~~~~~~~  216 (292)
                      |+|+++++.+....
T Consensus       159 P~Ll~~~~~~~~~~  172 (194)
T cd04372         159 PTLMRPPEDSALTT  172 (194)
T ss_pred             cccCCCCCccHHHH
Confidence            99999988765433

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=100.00  E-value=3.7e-45  Score=315.63  Aligned_cols=168  Identities=27%  Similarity=0.482  Sum_probs=152.9

Q ss_pred             CccCCCHHHHHhhhcC--CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHH
Q 022764           50 DVFGVPIEVTVQRQQY--GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL  127 (292)
Q Consensus        50 ~vFG~~L~~l~~~~~~--~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l  127 (292)
                      ++||+||++++.+++.  ...||.++.+|++||+++|+++|||||++|+..+++++++.+|.|....+....|+|++|++
T Consensus         1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l   80 (199)
T cd04390           1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL   80 (199)
T ss_pred             CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence            5899999999976532  35799999999999999999999999999999999999999999877666567899999999


Q ss_pred             HHHHHhhCCCCCCchhhhHHHHhHH--------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764          128 AKYYLASLPEPLTTFELYDEIKGAR--------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM  199 (292)
Q Consensus       128 LK~fLr~Lp~PLi~~~~~~~~~~~~--------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~  199 (292)
                      ||.|||+||+||+|.+.|+.|+.+.        .++..++.++..||+.|+.+|.||+.||++|+.|++.||||+.|||+
T Consensus        81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi  160 (199)
T cd04390          81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLAT  160 (199)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHH
Confidence            9999999999999999999998652        35678899999999999999999999999999999999999999999


Q ss_pred             hhccccccCCCCChHHHH
Q 022764          200 EMAPVIMWQKERKPEFYR  217 (292)
Q Consensus       200 vf~P~Ll~~~~~~~~~~~  217 (292)
                      ||||+|+|++..++....
T Consensus       161 vf~P~llr~~~~~~~~~~  178 (199)
T cd04390         161 VFGPNILRPKVEDPATIM  178 (199)
T ss_pred             HhccccCCCCCCCHHHHH
Confidence            999999999988765543

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=100.00  E-value=7.5e-45  Score=317.54  Aligned_cols=212  Identities=27%  Similarity=0.385  Sum_probs=173.1

Q ss_pred             CCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHH
Q 022764           49 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALA  128 (292)
Q Consensus        49 ~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lL  128 (292)
                      .++||+||+.++++.  +..||.+|.+|++||+.+|+++|||||++|+..+++.|++.++.+.+....++.++|+||++|
T Consensus         2 ~~vFGvpL~~~~~r~--g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL   79 (220)
T cd04375           2 KNVFGVPLLVNLQRT--GQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADML   79 (220)
T ss_pred             CCEecCcHHHHHhhc--CCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHH
Confidence            579999999998875  569999999999999999999999999999999999999999987655445678999999999


Q ss_pred             HHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhc
Q 022764          129 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA  202 (292)
Q Consensus       129 K~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~  202 (292)
                      |.|||+||+||+|.++|+.|+++      ..++++++.++..||++|+.+|++|+.||++|+.|++.|||+++|||+|||
T Consensus        80 K~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfa  159 (220)
T cd04375          80 KQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLA  159 (220)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHh
Confidence            99999999999999999999876      457899999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHHHhhhhcc
Q 022764          203 PVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAI  282 (292)
Q Consensus       203 P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~lIe~~~~i  282 (292)
                      |+||+....+......                   +.|.+...       ..-.|.....+-....+++|.+||+||+.|
T Consensus       160 P~L~~~~~~~~~~~~~-------------------~~~~~~~~-------~~~~~~~~~l~e~~~~~~~v~~lI~~~~~l  213 (220)
T cd04375         160 PSLFHLNTSRRENSSP-------------------ARRMQRKK-------SLGKPDQKELSENKAAHQCLAYMIEECNTL  213 (220)
T ss_pred             hhhcCCCCCCcccccc-------------------hhhhcccc-------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987655321110                   00000000       000000000111225677999999999999


Q ss_pred             ccccCc
Q 022764          283 FTDANE  288 (292)
Q Consensus       283 F~~~~~  288 (292)
                      |.++.|
T Consensus       214 f~vp~~  219 (220)
T cd04375         214 FMVPKE  219 (220)
T ss_pred             hcCCCC
Confidence            999876

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=100.00  E-value=2.2e-44  Score=314.32  Aligned_cols=196  Identities=24%  Similarity=0.357  Sum_probs=169.1

Q ss_pred             ccCCCHHHHHhhhc---CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC--CCCCCCchhhhH
Q 022764           51 VFGVPIEVTVQRQQ---YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDVA  125 (292)
Q Consensus        51 vFG~~L~~l~~~~~---~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va  125 (292)
                      +||+||++++++++   .+..||.++.+|+++|+++|+.+|||||++|+..+++++++.++.+...  ...+..|+|++|
T Consensus         1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va   80 (216)
T cd04391           1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA   80 (216)
T ss_pred             CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence            79999999998864   3579999999999999999999999999999999999999999976321  223568999999


Q ss_pred             HHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764          126 ALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM  199 (292)
Q Consensus       126 ~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~  199 (292)
                      ++||+|||+||+||+|.++|+.|.++      ..++.+++.++.+||+.|+.+|+||+.||++|+.|++.||||+.|||+
T Consensus        81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi  160 (216)
T cd04391          81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAM  160 (216)
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHH
Confidence            99999999999999999999999876      356888999999999999999999999999999999999999999999


Q ss_pred             hhccccccCCCCChHH---HHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHHH
Q 022764          200 EMAPVIMWQKERKPEF---YRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLM  276 (292)
Q Consensus       200 vf~P~Ll~~~~~~~~~---~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~lI  276 (292)
                      ||||+||++...++.+   ....+...                                          .....++++||
T Consensus       161 vfaP~l~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~iv~~lI  198 (216)
T cd04391         161 IMAPNLFPPRGKHSKDNESLQEEVNMA------------------------------------------AGCANIMRLLI  198 (216)
T ss_pred             HhccccCCCCCCCCCcchhHHHHHHHH------------------------------------------HHHHHHHHHHH
Confidence            9999999998765422   22222110                                          02345999999


Q ss_pred             hhhhccccccCc
Q 022764          277 EQHNAIFTDANE  288 (292)
Q Consensus       277 e~~~~iF~~~~~  288 (292)
                      +|++.||.+++.
T Consensus       199 ~~~~~if~~p~~  210 (216)
T cd04391         199 RYQDLLWTVPSF  210 (216)
T ss_pred             HhHHHHhcCCHH
Confidence            999999999864

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=100.00  E-value=8.1e-44  Score=305.52  Aligned_cols=157  Identities=25%  Similarity=0.424  Sum_probs=148.2

Q ss_pred             ccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHH
Q 022764           51 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKY  130 (292)
Q Consensus        51 vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~  130 (292)
                      +||+||+.+++    +..||.+|.+|++||+++|+.+|||||++|+..+++++++.+|+|...++ +++|+|++|++||+
T Consensus         1 ~FG~~L~~~~~----~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~va~~lK~   75 (192)
T cd04402           1 LFGQPLSNICE----DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDL-KAEPVLLLASVLKD   75 (192)
T ss_pred             CCCCcHHHHhC----CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCC-ccCCHHHHHHHHHH
Confidence            69999999987    45899999999999999999999999999999999999999999876665 67999999999999


Q ss_pred             HHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccc
Q 022764          131 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV  204 (292)
Q Consensus       131 fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~  204 (292)
                      |||+||+||+|.+.|+.++++      ..++..++.++.+||+.|+.+|.||+.||++|+.+++.|+||++|||+||||+
T Consensus        76 flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~  155 (192)
T cd04402          76 FLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPS  155 (192)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhcccc
Confidence            999999999999999999876      34788999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCC
Q 022764          205 IMWQKERK  212 (292)
Q Consensus       205 Ll~~~~~~  212 (292)
                      |++++..+
T Consensus       156 l~~~~~~~  163 (192)
T cd04402         156 LLWPPASS  163 (192)
T ss_pred             ccCCCCcc
Confidence            99999765

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=100.00  E-value=8.4e-44  Score=309.99  Aligned_cols=191  Identities=27%  Similarity=0.399  Sum_probs=165.5

Q ss_pred             cCCCHHHHHhhhcC---------CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC-CCCCCch
Q 022764           52 FGVPIEVTVQRQQY---------GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNP  121 (292)
Q Consensus        52 FG~~L~~l~~~~~~---------~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~  121 (292)
                      ||+||+.++++++.         ...||.++.+|++||+++|+.+|||||++|+..+++.+++.+|.+.... .....++
T Consensus         1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~   80 (213)
T cd04397           1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP   80 (213)
T ss_pred             CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence            99999999999754         1369999999999999999999999999999999999999999876432 2345799


Q ss_pred             hhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhccc-----cc
Q 022764          122 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSL-----LN  190 (292)
Q Consensus       122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~-----~N  190 (292)
                      |++|++||.|||+||+||+|.++|+.|+++      ..+...++.++..||+.|+.+|+||+.||++|+.++.     .|
T Consensus        81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~N  160 (213)
T cd04397          81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGS  160 (213)
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence            999999999999999999999999999886      3467788999999999999999999999999998764     59


Q ss_pred             CCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHH
Q 022764          191 KMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIE  270 (292)
Q Consensus       191 kMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~  270 (292)
                      ||+++|||+||||+|++++..++......                                              ....+
T Consensus       161 kM~~~NLAivf~P~Ll~~~~~~~~~~~~~----------------------------------------------~~~~~  194 (213)
T cd04397         161 KMDIHNLATVITPNILYSKTDNPNTGDEY----------------------------------------------FLAIE  194 (213)
T ss_pred             cCChHHhHHhhcccccCCCCCCcchHHHH----------------------------------------------HHHHH
Confidence            99999999999999999987653211110                                              12345


Q ss_pred             HHHHHHhhhhccccccCc
Q 022764          271 VVQCLMEQHNAIFTDANE  288 (292)
Q Consensus       271 vv~~lIe~~~~iF~~~~~  288 (292)
                      +|++||+||+.||.++++
T Consensus       195 vv~~LI~n~~~if~vp~~  212 (213)
T cd04397         195 AVNYLIENNEEFCEVPDE  212 (213)
T ss_pred             HHHHHHHhHHHHhcCCCC
Confidence            999999999999999876

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=100.00  E-value=1.8e-43  Score=305.90  Aligned_cols=163  Identities=29%  Similarity=0.499  Sum_probs=149.6

Q ss_pred             CCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC--CCCCCchhhhHH
Q 022764           49 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAA  126 (292)
Q Consensus        49 ~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~  126 (292)
                      .++||+||+++++++  ++.||.++.+|+.||+++|+.+|||||++|+..+++.+++.+|.|....  .....|+|++|+
T Consensus         2 ~~~FG~~L~~~~~~~--~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~   79 (203)
T cd04386           2 KPVFGTPLEEHLKRT--GREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVAS   79 (203)
T ss_pred             CCcCCCCHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHH
Confidence            579999999999875  5689999999999999999999999999999999999999999886432  123479999999


Q ss_pred             HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764          127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME  200 (292)
Q Consensus       127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v  200 (292)
                      +||.|||+||+||+|.++|+.|+++      ..++..++.++.+||+.|+.+|+||+.||++|+.|++.|+|+++|||+|
T Consensus        80 ~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~  159 (203)
T cd04386          80 ALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIV  159 (203)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHH
Confidence            9999999999999999999999886      3578899999999999999999999999999999999999999999999


Q ss_pred             hccccccCCCCCh
Q 022764          201 MAPVIMWQKERKP  213 (292)
Q Consensus       201 f~P~Ll~~~~~~~  213 (292)
                      |||+|+|++.++.
T Consensus       160 faP~ll~~~~~~~  172 (203)
T cd04386         160 LAPNLLWAKNEGS  172 (203)
T ss_pred             hccccCCCCCCCh
Confidence            9999999987653

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=100.00  E-value=1.2e-43  Score=306.06  Aligned_cols=182  Identities=23%  Similarity=0.369  Sum_probs=161.6

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY  131 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f  131 (292)
                      ||+||+.++++.  ++.||.+|.+|++||+++|+++|||||++|+..+++++++.+++|.......+.|+|+||++||+|
T Consensus         1 FGv~l~~l~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~f   78 (200)
T cd04408           1 FGVDFSQLPRDF--PEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHF   78 (200)
T ss_pred             CCCCHHHHHHhC--CCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHH
Confidence            999999999885  679999999999999999999999999999999999999999988754334568999999999999


Q ss_pred             HhhCCCCCCchhhhHHHHhHH------------------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCC
Q 022764          132 LASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMD  193 (292)
Q Consensus       132 Lr~Lp~PLi~~~~~~~~~~~~------------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt  193 (292)
                      ||+||+||+|.++|+.|+++.                  .++..++.++..||+.|+.+|+||+.||++|+.+++.|+|+
T Consensus        79 LReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~  158 (200)
T cd04408          79 LKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMS  158 (200)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence            999999999999999998752                  35788999999999999999999999999999999999999


Q ss_pred             hhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccC
Q 022764          194 ARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPH  237 (292)
Q Consensus       194 ~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~  237 (292)
                      +.|||+||||+|++++..+...+....  ..++++.+||.||.+
T Consensus       159 ~~NLAivf~P~Ll~~~~~~~~~~~~~~--~~~~q~~~ve~li~~  200 (200)
T cd04408         159 PNNLGIVFGPTLLRPLVGGDVSMICLL--DTGYQAQLVEFLISN  200 (200)
T ss_pred             HhHhhhhhccccCCCCCCCchHHHHHh--ccchHHHHHHHHhhC
Confidence            999999999999999976644333222  246678899988864

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=100.00  E-value=1.8e-43  Score=300.90  Aligned_cols=156  Identities=28%  Similarity=0.500  Sum_probs=145.8

Q ss_pred             cCCCHHHHHhhhc--CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHH
Q 022764           52 FGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK  129 (292)
Q Consensus        52 FG~~L~~l~~~~~--~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK  129 (292)
                      ||+||++++++++  .+..||.++.+|++||+++|+++|||||++|+..+++++++.++++...++ +++|+|++|++||
T Consensus         1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~-~~~d~h~va~lLK   79 (182)
T cd04381           1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNL-EEYEPPTVASLLK   79 (182)
T ss_pred             CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCc-cccChHHHHHHHH
Confidence            9999999998864  356899999999999999999999999999999999999999999887665 5689999999999


Q ss_pred             HHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764          130 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP  203 (292)
Q Consensus       130 ~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P  203 (292)
                      .|||+||+||+|.++|+.|.++      .+++..++.++.+||+.|+.+|+||+.||++|+.|++.|+||++|||+||||
T Consensus        80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP  159 (182)
T cd04381          80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP  159 (182)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence            9999999999999999999876      4578999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 022764          204 VIMWQ  208 (292)
Q Consensus       204 ~Ll~~  208 (292)
                      +|+.+
T Consensus       160 ~l~~~  164 (182)
T cd04381         160 TVQIS  164 (182)
T ss_pred             cccCc
Confidence            99754

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=100.00  E-value=1.8e-43  Score=303.71  Aligned_cols=185  Identities=23%  Similarity=0.425  Sum_probs=161.0

Q ss_pred             CccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCC---CCCchhhhHH
Q 022764           50 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFDVAA  126 (292)
Q Consensus        50 ~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~---~~~d~~~va~  126 (292)
                      ++||+||++++++.  +..||.++..|++||+++|+ +|||||++|+..+++++++.+|+|...+..   ...|+|++|+
T Consensus         1 ~vFG~~L~~~~~~~--g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~   77 (195)
T cd04384           1 RVFGCDLTEHLLNS--GQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSS   77 (195)
T ss_pred             CcCCccHHHHHHHc--CCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHH
Confidence            58999999999875  67999999999999999998 699999999999999999999998765442   2469999999


Q ss_pred             HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764          127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME  200 (292)
Q Consensus       127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v  200 (292)
                      +||.|||+||+||+|.++|+.|+++      .++++.++.++.+||+.|+.+|+||+.||++|+.+++.||||++|||+|
T Consensus        78 lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv  157 (195)
T cd04384          78 LCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIV  157 (195)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHh
Confidence            9999999999999999999999876      3578899999999999999999999999999999999999999999999


Q ss_pred             hccccccCCCCChHHHH-HHHHHhccCccccccccccC
Q 022764          201 MAPVIMWQKERKPEFYR-QYWNHASRSSSKNMEPATPH  237 (292)
Q Consensus       201 f~P~Ll~~~~~~~~~~~-~~~~~~~~~~~~i~e~li~~  237 (292)
                      |||+|+++++....... .......+.|+.|+|++|.|
T Consensus       158 f~P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~~  195 (195)
T cd04384         158 WAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH  195 (195)
T ss_pred             hhhhcCCCCccccccchHHHHHHHHhhhhhheehhhcC
Confidence            99999999865443211 11112245688899999875

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=100.00  E-value=5e-43  Score=301.48  Aligned_cols=165  Identities=27%  Similarity=0.530  Sum_probs=152.1

Q ss_pred             CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHH
Q 022764           48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL  127 (292)
Q Consensus        48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l  127 (292)
                      ++.+||+||+.++++.+.+..||.+|.+|++||+++|+++|||||++|+..+++.+++.+|+|...++....|+|++|++
T Consensus         2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~   81 (195)
T cd04404           2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI   81 (195)
T ss_pred             CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence            46899999999998865557999999999999999999999999999999999999999999876665333499999999


Q ss_pred             HHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhc
Q 022764          128 AKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA  202 (292)
Q Consensus       128 LK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~  202 (292)
                      ||+|||+||+||+|.+.|+.+.++     ..++..++.++.+||+.|+.+|.+|+.||++|+.|++.|+|+++|||+|||
T Consensus        82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfa  161 (195)
T cd04404          82 LKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFG  161 (195)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeee
Confidence            999999999999999999999875     457889999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCC
Q 022764          203 PVIMWQKERK  212 (292)
Q Consensus       203 P~Ll~~~~~~  212 (292)
                      |+|+|+++.+
T Consensus       162 P~l~~~~~~~  171 (195)
T cd04404         162 PNLLWAKDAS  171 (195)
T ss_pred             ccccCCCCcc
Confidence            9999988664

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=2.5e-43  Score=304.89  Aligned_cols=183  Identities=22%  Similarity=0.392  Sum_probs=161.7

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY  131 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f  131 (292)
                      ||+||+.++++.  +..||.+|.+|+++|+++|+.+|||||++|+..+++++++.+++|.......++|+|++|++||+|
T Consensus         1 FG~~L~~~~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~f   78 (203)
T cd04378           1 FGVDFSQVPRDF--PDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLF   78 (203)
T ss_pred             CCCChHHHHHHC--CCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence            999999999985  569999999999999999999999999999999999999999988754444678999999999999


Q ss_pred             HhhCCCCCCchhhhHHHHhHH--------------------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccC
Q 022764          132 LASLPEPLTTFELYDEIKGAR--------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNK  191 (292)
Q Consensus       132 Lr~Lp~PLi~~~~~~~~~~~~--------------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~Nk  191 (292)
                      ||+||+||+|.++|+.|+++.                    .++..++.++.+||+.|+.+|.||+.||++|++|++.|+
T Consensus        79 LReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk  158 (203)
T cd04378          79 LRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENK  158 (203)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999998752                    246789999999999999999999999999999999999


Q ss_pred             CChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccC
Q 022764          192 MDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPH  237 (292)
Q Consensus       192 Mt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~  237 (292)
                      |+++|||+||||+|+|++..+.......+.+ .+++..+||.||.|
T Consensus       159 M~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~-~~~q~~~ve~li~~  203 (203)
T cd04378         159 MSPNNLGIVFGPTLIRPRPGDADVSLSSLVD-YGYQARLVEFLITN  203 (203)
T ss_pred             CCHHHhhhhhccccCCCCCCCcchhHHHHHh-hhhhHHHHHHHhhC
Confidence            9999999999999999998754322222232 36788899998864

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=3e-43  Score=305.82  Aligned_cols=183  Identities=22%  Similarity=0.403  Sum_probs=159.4

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY  131 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f  131 (292)
                      ||+||++++++.  +..||.+|.+|+++|+++|+.+|||||++|+..+++++++.+++|.......+.|+|++|++||.|
T Consensus         1 FG~~L~~~~~~~--~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~f   78 (211)
T cd04409           1 FGADFAQVAKKS--PDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLY   78 (211)
T ss_pred             CCCChHHHHHhC--CCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHH
Confidence            999999999985  568999999999999999999999999999999999999999988764434568999999999999


Q ss_pred             HhhCCCCCCchhhhHHHHhHHH----------------------------HHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 022764          132 LASLPEPLTTFELYDEIKGARS----------------------------SIHAMRNTLKKLSNVNFMTLEYVTALLLRV  183 (292)
Q Consensus       132 Lr~Lp~PLi~~~~~~~~~~~~~----------------------------~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V  183 (292)
                      ||+||+||+|.++|+.|+++..                            .+..++.++.+||++|+.+|+||+.||++|
T Consensus        79 LReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V  158 (211)
T cd04409          79 LRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRV  158 (211)
T ss_pred             HHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987521                            245789999999999999999999999999


Q ss_pred             HhcccccCCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccC
Q 022764          184 SQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPH  237 (292)
Q Consensus       184 ~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~  237 (292)
                      ++|++.|+|+++|||+||||+|+|++..+.......+.+ ...+..|||.||.|
T Consensus       159 ~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~-~~~~~~~ve~li~~  211 (211)
T cd04409         159 SEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVD-YPHQARLVELLITY  211 (211)
T ss_pred             HcccccCCCChHHhhhhccccccCCCCCCcchhHHHHhh-hhhHHHHHHHHhhC
Confidence            999999999999999999999999987664322222222 23478899988864

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=100.00  E-value=9.6e-43  Score=297.67  Aligned_cols=160  Identities=24%  Similarity=0.438  Sum_probs=148.7

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCC--CCCCchhhhHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL--PEGVNPFDVAALAK  129 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~--~~~~d~~~va~lLK  129 (292)
                      ||+||+++++++  +..||.++.+|++||+++|+++|||||++|+...+++++..+|.+...++  ....|+|++|++||
T Consensus         1 FGv~L~~~~~~~--~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK   78 (187)
T cd04403           1 FGCHLEALCQRE--NSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALK   78 (187)
T ss_pred             CCCChHHHHHHc--CCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHH
Confidence            999999999885  56899999999999999999999999999999999999999998876543  23579999999999


Q ss_pred             HHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764          130 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP  203 (292)
Q Consensus       130 ~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P  203 (292)
                      .|||+||+||+|++.|+.|+++      .+++..++.++.+||+.|+.+|+||+.||++|+.+++.|+||+.|||+||||
T Consensus        79 ~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P  158 (187)
T cd04403          79 LFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGP  158 (187)
T ss_pred             HHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccc
Confidence            9999999999999999999876      3578899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCh
Q 022764          204 VIMWQKERKP  213 (292)
Q Consensus       204 ~Ll~~~~~~~  213 (292)
                      +|+|++..+.
T Consensus       159 ~ll~~~~~~~  168 (187)
T cd04403         159 TLLRPEQETG  168 (187)
T ss_pred             cccCCCCcch
Confidence            9999987664

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=100.00  E-value=1.1e-42  Score=300.48  Aligned_cols=159  Identities=28%  Similarity=0.382  Sum_probs=144.0

Q ss_pred             ccCCCHHHHHhhhc-CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHH
Q 022764           51 VFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK  129 (292)
Q Consensus        51 vFG~~L~~l~~~~~-~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK  129 (292)
                      +||+||+.++.+.. .+..||.+|.+|++||++ |+++|||||++|+..+++.+++.+|+|....  ...++|++|++||
T Consensus         1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~--~~~~~~~vaslLK   77 (202)
T cd04394           1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL--SSALPCDVAGLLK   77 (202)
T ss_pred             CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc--cccCHHHHHHHHH
Confidence            79999999987532 357999999999999986 5999999999999999999999999887543  4578999999999


Q ss_pred             HHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764          130 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP  203 (292)
Q Consensus       130 ~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P  203 (292)
                      .|||+||+||+|.++|+.|+++      ..+...++.++.+||+.|+.+|+||+.||++|+.|++.||||++|||+||||
T Consensus        78 ~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP  157 (202)
T cd04394          78 QFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP  157 (202)
T ss_pred             HHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence            9999999999999999999886      2466778889999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCC
Q 022764          204 VIMWQKERK  212 (292)
Q Consensus       204 ~Ll~~~~~~  212 (292)
                      +|++++...
T Consensus       158 ~L~~~~~~~  166 (202)
T cd04394         158 NLFQSEEGG  166 (202)
T ss_pred             eeecCCCcc
Confidence            999987643

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=100.00  E-value=1.3e-42  Score=296.32  Aligned_cols=157  Identities=26%  Similarity=0.443  Sum_probs=145.2

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY  131 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f  131 (292)
                      ||+||+.++.   .+..||.+|.+|++||+++|+.+|||||++|+..+++.+++.++.+......+++|+|++|++||.|
T Consensus         1 FGv~L~~~~~---~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~f   77 (186)
T cd04407           1 FGVRVGSLTS---NKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQW   77 (186)
T ss_pred             CCCcHHHHHh---CCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHH
Confidence            9999999975   3669999999999999999999999999999999999999999987644334678999999999999


Q ss_pred             HhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccc
Q 022764          132 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI  205 (292)
Q Consensus       132 Lr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~L  205 (292)
                      ||+||+||+|++.|+.|+.+      .+++..++.++.+||+.|+.+|++|+.||++|+.+++.|+|+++|||+||||+|
T Consensus        78 lReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~L  157 (186)
T cd04407          78 LRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCL  157 (186)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccc
Confidence            99999999999999999876      357889999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCC
Q 022764          206 MWQKER  211 (292)
Q Consensus       206 l~~~~~  211 (292)
                      +|+++.
T Consensus       158 l~~~~~  163 (186)
T cd04407         158 LRCPDS  163 (186)
T ss_pred             cCCCCC
Confidence            998753

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=100.00  E-value=1.9e-42  Score=295.18  Aligned_cols=177  Identities=27%  Similarity=0.441  Sum_probs=154.8

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY  131 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f  131 (292)
                      ||+||+.++..   ++.||.++.+|++||+++|+.+|||||++|+..+++.+++.+|.+......+++|+|++|++||.|
T Consensus         1 FGv~L~~l~~~---~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~f   77 (186)
T cd04406           1 FGVELSRLTSE---DRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQW   77 (186)
T ss_pred             CCCchHHHHHC---CCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHH
Confidence            99999998754   568999999999999999999999999999999999999999987644334678999999999999


Q ss_pred             HhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccc
Q 022764          132 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI  205 (292)
Q Consensus       132 Lr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~L  205 (292)
                      ||+||+||+|.++|+.|+++      .+++..++.++.+||+.|+.+|++|+.||++|+.|++.|+||++|||+||||+|
T Consensus        78 LReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~l  157 (186)
T cd04406          78 LRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCI  157 (186)
T ss_pred             HHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccc
Confidence            99999999999999999876      346778899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCC-ChHHHHHHHHHhccCccccccccc
Q 022764          206 MWQKER-KPEFYRQYWNHASRSSSKNMEPAT  235 (292)
Q Consensus       206 l~~~~~-~~~~~~~~~~~~~~~~~~i~e~li  235 (292)
                      +|+++. ++...   ++++. .+..++|.+|
T Consensus       158 l~~p~~~d~~~~---~~~~~-~~~~~~~~~~  184 (186)
T cd04406         158 LRCPDTTDPLQS---VQDIS-KTTTCVELIV  184 (186)
T ss_pred             cCCCCCCCHHHH---HHHHh-hccchhhhhc
Confidence            998764 44332   23322 3677777665

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=100.00  E-value=2.4e-42  Score=297.40  Aligned_cols=166  Identities=27%  Similarity=0.412  Sum_probs=149.4

Q ss_pred             ccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC-CC--CCCCchhhhHHH
Q 022764           51 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SL--PEGVNPFDVAAL  127 (292)
Q Consensus        51 vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~--~~~~d~~~va~l  127 (292)
                      .||+||++...+. .+..||.++.+|+++|+++|+++|||||++|+..+++++++.+|+|... +.  .+..|+|++|++
T Consensus         1 ~FGvpl~~~~~~~-~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~l   79 (196)
T cd04395           1 TFGVPLDDCPPSS-ENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSL   79 (196)
T ss_pred             CCCccHHHHhccc-CCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHH
Confidence            5999999877643 3578999999999999999999999999999999999999999988643 22  234789999999


Q ss_pred             HHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhh
Q 022764          128 AKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM  201 (292)
Q Consensus       128 LK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf  201 (292)
                      ||+|||+||+||+|.+.|+.++++      .+++..++.++.+||+.|+.+|.||+.||++|+.|++.|+|+++|||+||
T Consensus        80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f  159 (196)
T cd04395          80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF  159 (196)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence            999999999999999999999875      45788999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHH
Q 022764          202 APVIMWQKERKPEFYR  217 (292)
Q Consensus       202 ~P~Ll~~~~~~~~~~~  217 (292)
                      ||+|+|+++.+.....
T Consensus       160 aP~l~r~~~~~~~~~~  175 (196)
T cd04395         160 GPTLVRTSDDNMETMV  175 (196)
T ss_pred             ccccCCCCCCCHHHHH
Confidence            9999999887765443

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=100.00  E-value=2.3e-42  Score=298.95  Aligned_cols=181  Identities=24%  Similarity=0.386  Sum_probs=159.0

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhh
Q 022764           66 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELY  145 (292)
Q Consensus        66 ~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~  145 (292)
                      ++.||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|....+....|+|+||++||.|||+||+||+|.++|
T Consensus         6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y   85 (206)
T cd04376           6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY   85 (206)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence            56999999999999999999999999999999999999999999987766667899999999999999999999999999


Q ss_pred             HHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhccc-----------ccCCChhhhhHhhccccccCC
Q 022764          146 DEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSL-----------LNKMDARSLAMEMAPVIMWQK  209 (292)
Q Consensus       146 ~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~-----------~NkMt~~nLa~vf~P~Ll~~~  209 (292)
                      +.|+++     .+++..++.++.+||+.|+.+|+||+.||++|+.|++           .||||++|||+||||+|+|++
T Consensus        86 ~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~  165 (206)
T cd04376          86 TAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQ  165 (206)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCC
Confidence            999876     3578899999999999999999999999999999986           799999999999999999998


Q ss_pred             CCChHHH---HHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHHHhhhhcccccc
Q 022764          210 ERKPEFY---RQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDA  286 (292)
Q Consensus       210 ~~~~~~~---~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~lIe~~~~iF~~~  286 (292)
                      ..+....   ...+.+                                          ......+|++||+||+.||.++
T Consensus       166 ~~~~~~~~~~~~~~~~------------------------------------------~~~~~~vv~~LI~~~~~iF~~~  203 (206)
T cd04376         166 KSGEREFVQASLRIEE------------------------------------------STAIINVVQTMIDNYEELFMVS  203 (206)
T ss_pred             CCcccccchhhhhHHH------------------------------------------HHHHHHHHHHHHHhHHHHcCCC
Confidence            7654211   111110                                          0123459999999999999998


Q ss_pred             Cc
Q 022764          287 NE  288 (292)
Q Consensus       287 ~~  288 (292)
                      +|
T Consensus       204 ~~  205 (206)
T cd04376         204 PE  205 (206)
T ss_pred             CC
Confidence            86

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=100.00  E-value=2.5e-42  Score=295.11  Aligned_cols=170  Identities=23%  Similarity=0.383  Sum_probs=151.9

Q ss_pred             CccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC--CCCCCchhhhHHH
Q 022764           50 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAAL  127 (292)
Q Consensus        50 ~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~l  127 (292)
                      ++||++|++++++.  +..||.+|.+|++||+++|+++|||||++|+..+++.+++.+|+|.+..  ..+..|+|+||++
T Consensus         1 k~FG~~L~~~~~~~--~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~l   78 (188)
T cd04383           1 KLFNGSLEEYIQDS--GQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGV   78 (188)
T ss_pred             CcCCccHHHHHHHC--CCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence            48999999999874  6699999999999999999999999999999999999999999887542  2346899999999


Q ss_pred             HHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhh
Q 022764          128 AKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM  201 (292)
Q Consensus       128 LK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf  201 (292)
                      ||.|||+||+||+|.++|+.++++      .+++..++.++.+||+.|+.+|+||+.||++|++|++.||||++|||+||
T Consensus        79 LK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf  158 (188)
T cd04383          79 LKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICF  158 (188)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeee
Confidence            999999999999999999999886      35788899999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCC-ChHHHHHHHH
Q 022764          202 APVIMWQKER-KPEFYRQYWN  221 (292)
Q Consensus       202 ~P~Ll~~~~~-~~~~~~~~~~  221 (292)
                      ||+|++.++. ++...+..++
T Consensus       159 ~P~L~~~p~~~~~~~~~~~~~  179 (188)
T cd04383         159 GPTLMPVPEGQDQVSCQAHVN  179 (188)
T ss_pred             eccccCCCCCccHHHHHHHHH
Confidence            9999997653 3444444443

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=100.00  E-value=3.9e-42  Score=297.50  Aligned_cols=162  Identities=27%  Similarity=0.364  Sum_probs=146.8

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC-CCCC--CCCchhhhHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA  128 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~--~~~d~~~va~lL  128 (292)
                      ||+||+.++++++.+..||.+|.+|++||+++|+.+|||||++|+..+++.|++.++++.. .++.  ...|+|+||++|
T Consensus         1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL   80 (207)
T cd04379           1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL   80 (207)
T ss_pred             CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence            9999999999876678999999999999999999999999999999999999999998753 2222  224899999999


Q ss_pred             HHHHhhCCCCCCchhhhHHHHhHH---------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764          129 KYYLASLPEPLTTFELYDEIKGAR---------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM  199 (292)
Q Consensus       129 K~fLr~Lp~PLi~~~~~~~~~~~~---------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~  199 (292)
                      |+|||+||+||+|.++|+.|+++.         .....++.++.+||+.|+.+|+||+.||++|+.|++.||||+.|||+
T Consensus        81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAi  160 (207)
T cd04379          81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAV  160 (207)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHH
Confidence            999999999999999999998762         23556888999999999999999999999999999999999999999


Q ss_pred             hhccccccCCCCCh
Q 022764          200 EMAPVIMWQKERKP  213 (292)
Q Consensus       200 vf~P~Ll~~~~~~~  213 (292)
                      ||||+|+++++.+.
T Consensus       161 vf~P~Ll~~~~~~~  174 (207)
T cd04379         161 CFGPVLMFCSQEFS  174 (207)
T ss_pred             hhccccCCCCcccc
Confidence            99999999997763

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=100.00  E-value=4.3e-42  Score=301.39  Aligned_cols=161  Identities=29%  Similarity=0.496  Sum_probs=145.4

Q ss_pred             ccCCCHHHHHhhhcC-------------CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC----C
Q 022764           51 VFGVPIEVTVQRQQY-------------GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN----A  113 (292)
Q Consensus        51 vFG~~L~~l~~~~~~-------------~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~----~  113 (292)
                      |||++|++.+++.+.             .+.||.+|.+|++||+++|+.+|||||++|+..+++++++.+|.+.+    .
T Consensus         1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~   80 (225)
T cd04396           1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF   80 (225)
T ss_pred             CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence            799999999987642             25799999999999999999999999999999999999999998643    3


Q ss_pred             CCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH-----------------------HHHHHHHHHHHhhhcHHHH
Q 022764          114 SLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-----------------------RSSIHAMRNTLKKLSNVNF  170 (292)
Q Consensus       114 ~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~-----------------------~~~~~~l~~ll~~LP~~n~  170 (292)
                      +. .++++|++|++||+|||+||+||+|.++|+.|.++                       .+++..++.++.+||+.|+
T Consensus        81 ~~-~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~  159 (225)
T cd04396          81 DW-DGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNR  159 (225)
T ss_pred             Cc-cCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHH
Confidence            33 56899999999999999999999999999998653                       2467788999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCC
Q 022764          171 MTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK  212 (292)
Q Consensus       171 ~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~  212 (292)
                      .+|+||+.||++|++|++.|||+++|||+||||+|+++++.+
T Consensus       160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~  201 (225)
T cd04396         160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE  201 (225)
T ss_pred             HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc
Confidence            999999999999999999999999999999999999987654

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=100.00  E-value=5.4e-42  Score=294.37  Aligned_cols=159  Identities=28%  Similarity=0.472  Sum_probs=145.8

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC-CCC----CCCchhhhHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SLP----EGVNPFDVAA  126 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~~----~~~d~~~va~  126 (292)
                      ||+||++++.++  +..||.++.+|+++|+++|+++|||||++|+..+++++++.+|++... +..    ...|+|++|+
T Consensus         1 FG~~L~~~~~~~--~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~   78 (192)
T cd04398           1 FGVPLEDLILRE--GDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVAS   78 (192)
T ss_pred             CCCChHHHHHHc--CCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHH
Confidence            999999999885  469999999999999999999999999999999999999999987632 211    2469999999


Q ss_pred             HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764          127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME  200 (292)
Q Consensus       127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v  200 (292)
                      +||.|||+||+||+|.+.|+.|+++      ..++..++.++.+||+.|+.+|.||+.||++|+.+++.|+|++.|||+|
T Consensus        79 ~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaiv  158 (192)
T cd04398          79 LLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAII  158 (192)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHH
Confidence            9999999999999999999999876      3477889999999999999999999999999999999999999999999


Q ss_pred             hccccccCCCCC
Q 022764          201 MAPVIMWQKERK  212 (292)
Q Consensus       201 f~P~Ll~~~~~~  212 (292)
                      |||+|++++..+
T Consensus       159 f~P~l~~~~~~~  170 (192)
T cd04398         159 WGPTLMNAAPDN  170 (192)
T ss_pred             HhhhhCCCCccc
Confidence            999999998764

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=100.00  E-value=5.4e-42  Score=297.10  Aligned_cols=182  Identities=24%  Similarity=0.355  Sum_probs=158.1

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCC-CCCchhhhHHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKY  130 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~-~~~d~~~va~lLK~  130 (292)
                      ||.+|.+-        .++ .|.+|++||++ |+.+|||||++|+..+++.|++.+++|...++. .++|+|+||++||.
T Consensus         1 ~~~~~~~~--------~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~   70 (208)
T cd04392           1 FGAPLTEE--------GIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKG   70 (208)
T ss_pred             CCCCcccc--------ccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHH
Confidence            78888753        334 67899999998 999999999999999999999999999877654 35799999999999


Q ss_pred             HHhhCCCCCCchhhhHHHHhHH------------------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCC
Q 022764          131 YLASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKM  192 (292)
Q Consensus       131 fLr~Lp~PLi~~~~~~~~~~~~------------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM  192 (292)
                      |||+||+||+|.++|+.|+++.                  .+++.++.++.+||+.|+.+|+||+.||++|+.|++.|+|
T Consensus        71 flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM  150 (208)
T cd04392          71 FLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKM  150 (208)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            9999999999999999986542                  3467888999999999999999999999999999999999


Q ss_pred             ChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHH
Q 022764          193 DARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVV  272 (292)
Q Consensus       193 t~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv  272 (292)
                      |+.|||+||||+|+++++.++.........                                             ..++|
T Consensus       151 ~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~---------------------------------------------~~~iv  185 (208)
T cd04392         151 SADNLALLFTPHLICPRNLTPEDLHENAQK---------------------------------------------LNSIV  185 (208)
T ss_pred             CHHHHHHHhCcccCCCCCCCHHHHHHHHHH---------------------------------------------HHHHH
Confidence            999999999999999988777665443322                                             22389


Q ss_pred             HHHHhhhhccccccCc
Q 022764          273 QCLMEQHNAIFTDANE  288 (292)
Q Consensus       273 ~~lIe~~~~iF~~~~~  288 (292)
                      ++||+||+.||+++++
T Consensus       186 ~~lI~~~~~iF~~~~~  201 (208)
T cd04392         186 TFMIKHSQKLFKAPAY  201 (208)
T ss_pred             HHHHHHHHHHcCCcHH
Confidence            9999999999999864

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=100.00  E-value=2.1e-41  Score=289.89  Aligned_cols=162  Identities=25%  Similarity=0.393  Sum_probs=150.9

Q ss_pred             CccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHH
Q 022764           50 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK  129 (292)
Q Consensus        50 ~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK  129 (292)
                      ++||+||++++++...+..||.+|..|++||+++|+.+|||||++|+...++.+++.+++|...++..+.|+|++|++||
T Consensus         1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK   80 (189)
T cd04393           1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR   80 (189)
T ss_pred             CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence            58999999999876566799999999999999999999999999999999999999999998777656689999999999


Q ss_pred             HHHhhCCCCCCchhhhHHHHhH-------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhc
Q 022764          130 YYLASLPEPLTTFELYDEIKGA-------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA  202 (292)
Q Consensus       130 ~fLr~Lp~PLi~~~~~~~~~~~-------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~  202 (292)
                      +|||+||+||+|.+.|+.++++       ..++..++.++.+||+.|+.+|.+|+.||++|+.|++.|+||+.|||+|||
T Consensus        81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~  160 (189)
T cd04393          81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFG  160 (189)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhcc
Confidence            9999999999999999999876       236778999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCC
Q 022764          203 PVIMWQKER  211 (292)
Q Consensus       203 P~Ll~~~~~  211 (292)
                      |+||+.+.+
T Consensus       161 P~l~~~~~~  169 (189)
T cd04393         161 PDVFHVYTD  169 (189)
T ss_pred             CceeCCCCC
Confidence            999998764

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=100.00  E-value=2.3e-41  Score=288.59  Aligned_cols=160  Identities=31%  Similarity=0.533  Sum_probs=148.4

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCC-CCCchhhhHHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKY  130 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~-~~~d~~~va~lLK~  130 (292)
                      ||+||.+++..   +..||.+|.+|++||+++|+.+|||||++|+..+++++++.++.+...++. .++|+|++|++||+
T Consensus         1 FG~pL~~~~~~---~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~   77 (185)
T cd04373           1 FGVPLANVVTS---EKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKS   77 (185)
T ss_pred             CCCchHHHHhC---CCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHH
Confidence            99999999884   679999999999999999999999999999999999999999988766543 45799999999999


Q ss_pred             HHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccc
Q 022764          131 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV  204 (292)
Q Consensus       131 fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~  204 (292)
                      |||+||+||+|+++|+.+.++      ..++..++.+++.||+.|+.+|.||+.||++|+++++.|+||++|||+||||+
T Consensus        78 fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~  157 (185)
T cd04373          78 FFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPT  157 (185)
T ss_pred             HHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccc
Confidence            999999999999999999876      34688999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCChH
Q 022764          205 IMWQKERKPE  214 (292)
Q Consensus       205 Ll~~~~~~~~  214 (292)
                      |+++...+..
T Consensus       158 L~~~~~~~~~  167 (185)
T cd04373         158 LMRPDFTSME  167 (185)
T ss_pred             cCCCCCCCHH
Confidence            9998877643

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=100.00  E-value=1.7e-41  Score=290.75  Aligned_cols=159  Identities=24%  Similarity=0.424  Sum_probs=144.6

Q ss_pred             ccCCCHHHHHhhhcC---CCCCCHHHHHHHHHHHHcC-CCCcCcccccCCHHHHHHHHHHHccCCCCCCC---CCCchhh
Q 022764           51 VFGVPIEVTVQRQQY---GKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFD  123 (292)
Q Consensus        51 vFG~~L~~l~~~~~~---~~~vP~~l~~~i~~l~~~g-l~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~---~~~d~~~  123 (292)
                      +||+||++++++.+.   +..||.+|.+|++||+++| +.+|||||++|+...++.+++.++.+.+.+..   ...|+|+
T Consensus         1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~   80 (190)
T cd04400           1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT   80 (190)
T ss_pred             CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence            799999999987532   5689999999999999987 79999999999999999999999988765432   3579999


Q ss_pred             hHHHHHHHHhhCCCCCCchhhhHHHHhH-------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764          124 VAALAKYYLASLPEPLTTFELYDEIKGA-------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS  196 (292)
Q Consensus       124 va~lLK~fLr~Lp~PLi~~~~~~~~~~~-------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n  196 (292)
                      +|++||.|||+||+||+|.++|+.|..+       .+++..++.++.+||+.|+.+|++|+.||++|+.|++.|+||++|
T Consensus        81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N  160 (190)
T cd04400          81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN  160 (190)
T ss_pred             HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence            9999999999999999999999999764       356888999999999999999999999999999999999999999


Q ss_pred             hhHhhccccccCC
Q 022764          197 LAMEMAPVIMWQK  209 (292)
Q Consensus       197 La~vf~P~Ll~~~  209 (292)
                      ||+||||+|+++.
T Consensus       161 La~vf~P~L~~~~  173 (190)
T cd04400         161 VCIVFSPTLNIPA  173 (190)
T ss_pred             hhhhcCCCCCCCH
Confidence            9999999998763

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=100.00  E-value=3.4e-41  Score=287.74  Aligned_cols=167  Identities=27%  Similarity=0.360  Sum_probs=149.8

Q ss_pred             cCCCHHHHHhhhcC---CCCCCHHHHHHHHHHH-HcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHH
Q 022764           52 FGVPIEVTVQRQQY---GKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL  127 (292)
Q Consensus        52 FG~~L~~l~~~~~~---~~~vP~~l~~~i~~l~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l  127 (292)
                      ||+||++++.+++.   +..||.++..|++++. .+|+.+|||||++|+..+++++++.+|++.. ......|+|++|++
T Consensus         1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~d~h~va~l   79 (187)
T cd04389           1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDY-PLSGLEDPHVPASL   79 (187)
T ss_pred             CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCC-CccccCCHHHHHHH
Confidence            99999999977643   4689999999999986 5789999999999999999999999998753 33455799999999


Q ss_pred             HHHHHhhCCCCCCchhhhHHHHhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcc--cccCCChhhhhHhhcccc
Q 022764          128 AKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKS--LLNKMDARSLAMEMAPVI  205 (292)
Q Consensus       128 LK~fLr~Lp~PLi~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~--~~NkMt~~nLa~vf~P~L  205 (292)
                      ||+|||+||+||+|.++|+.++++.+..+.+++++.+||+.|+.+|.||+.||++|+.++  +.|||+++|||+||||+|
T Consensus        80 LK~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l  159 (187)
T cd04389          80 LKLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNI  159 (187)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHcccc
Confidence            999999999999999999999998766788999999999999999999999999999754  789999999999999999


Q ss_pred             ccCCCCChHHHHHH
Q 022764          206 MWQKERKPEFYRQY  219 (292)
Q Consensus       206 l~~~~~~~~~~~~~  219 (292)
                      ++++.+++....++
T Consensus       160 ~~~~~~~~~~~~~~  173 (187)
T cd04389         160 LRCTSDDPRVIFEN  173 (187)
T ss_pred             CCCCCCCHHHHHHc
Confidence            99998887655433

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=100.00  E-value=4.4e-41  Score=288.87  Aligned_cols=160  Identities=26%  Similarity=0.432  Sum_probs=147.2

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC--CCCCCchhhhHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAALAK  129 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~lLK  129 (292)
                      ||+||..+++++  +..||.++.+|++||+++|+++|||||++|+..+++++++.+|++....  ..+..|+|+||++||
T Consensus         1 FGv~L~~~~~r~--~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK   78 (196)
T cd04387           1 FGVKISTVTKRE--RSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLK   78 (196)
T ss_pred             CCCCHHHHHHhc--CCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHH
Confidence            999999999985  5589999999999999999999999999999999999999999875422  235689999999999


Q ss_pred             HHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764          130 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP  203 (292)
Q Consensus       130 ~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P  203 (292)
                      .|||+||+||+|+++|+.|+++      ..+.+.++.++.+||+.|+.+|.||+.||++|+.+++.|||++.|||+||||
T Consensus        79 ~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P  158 (196)
T cd04387          79 LYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGP  158 (196)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHcc
Confidence            9999999999999999999876      3467789999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCh
Q 022764          204 VIMWQKERKP  213 (292)
Q Consensus       204 ~Ll~~~~~~~  213 (292)
                      +|++++..+.
T Consensus       159 ~Llr~~~~~~  168 (196)
T cd04387         159 TLLRPSEKES  168 (196)
T ss_pred             ccCCCCcccc
Confidence            9999987654

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=100.00  E-value=2e-40  Score=283.18  Aligned_cols=158  Identities=29%  Similarity=0.482  Sum_probs=145.6

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY  131 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f  131 (292)
                      ||+||+.++..   +..||.+|..|++||+++|+.+|||||++|+..+++.+++.+|++......+.+|+|++|++||+|
T Consensus         1 FG~~L~~~~~~---~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~f   77 (186)
T cd04377           1 FGVSLSSLTSE---DRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQW   77 (186)
T ss_pred             CCCCHHHHHhC---CCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHH
Confidence            99999999864   568999999999999999999999999999999999999999988533234668999999999999


Q ss_pred             HhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccc
Q 022764          132 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI  205 (292)
Q Consensus       132 Lr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~L  205 (292)
                      ||+||+||+|++.|+.|+++      .+++..++.++.+||+.|+.+|.||+.||++|+.|++.|+|+++|||+||||+|
T Consensus        78 lr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l  157 (186)
T cd04377          78 LRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCI  157 (186)
T ss_pred             HHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHh
Confidence            99999999999999999875      346889999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC
Q 022764          206 MWQKERK  212 (292)
Q Consensus       206 l~~~~~~  212 (292)
                      +|+++..
T Consensus       158 l~~~~~~  164 (186)
T cd04377         158 LRCPDTA  164 (186)
T ss_pred             cCCCCCC
Confidence            9998654

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=100.00  E-value=6.2e-40  Score=285.01  Aligned_cols=159  Identities=23%  Similarity=0.339  Sum_probs=141.9

Q ss_pred             cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcC--CCCc----CcccccCCHHHHHHHHHHHccCCCCCC----CCCCch
Q 022764           52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG--LNSQ----FLFKAEGDKKVIQHLVSMYNQDPNASL----PEGVNP  121 (292)
Q Consensus        52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~g--l~~e----GIFR~~g~~~~i~~l~~~~~~~~~~~~----~~~~d~  121 (292)
                      ||+||+.+++++  +..||.+|.+|++||+++|  +..+    ||||++|+.+.+++|++.++++...+.    ..++|+
T Consensus         1 FGv~L~~~~~~~--~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv   78 (212)
T cd04399           1 FGVDLETRCRLD--KKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEP   78 (212)
T ss_pred             CCCcHHHHHhhc--CCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCH
Confidence            999999999885  4589999999999999865  3333    999999999999999999999876643    346899


Q ss_pred             hhhHHHHHHHHhhCCCCCCchhhhHHHHhH------------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccc
Q 022764          122 FDVAALAKYYLASLPEPLTTFELYDEIKGA------------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLL  189 (292)
Q Consensus       122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~  189 (292)
                      |++|++||.|||+||+||+|+++|+.|.++            .+++..++.++.+||+.|+.+|++|+.||++|+.++..
T Consensus        79 ~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~  158 (212)
T cd04399          79 STVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKM  158 (212)
T ss_pred             HHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998653            45789999999999999999999999999999998766


Q ss_pred             c---CCChhhhhHhhccccccCCCCC
Q 022764          190 N---KMDARSLAMEMAPVIMWQKERK  212 (292)
Q Consensus       190 N---kMt~~nLa~vf~P~Ll~~~~~~  212 (292)
                      |   +|+++|||+||||+|+|+....
T Consensus       159 ~~~~kM~~~nLa~vfgp~llr~~~~~  184 (212)
T cd04399         159 GESEEEYADKLATSLSREILRPIIES  184 (212)
T ss_pred             ccccccCHHHHHHHhhhhhcCCCccc
Confidence            5   6999999999999999987654

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=100.00  E-value=1.5e-39  Score=278.77  Aligned_cols=149  Identities=27%  Similarity=0.388  Sum_probs=137.7

Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhh
Q 022764           65 YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFEL  144 (292)
Q Consensus        65 ~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~  144 (292)
                      .+..||.++.+|+++|+++|+.+|||||++|+..+++.+++.+++|......+..|+|++|++||+|||+||+||+|.++
T Consensus        13 ~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~   92 (193)
T cd04382          13 TSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFAL   92 (193)
T ss_pred             CCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHH
Confidence            46799999999999999999999999999999999999999999887654445679999999999999999999999999


Q ss_pred             hHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChH
Q 022764          145 YDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE  214 (292)
Q Consensus       145 ~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~  214 (292)
                      |+.|+++      ..++..++.++..||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+.++.++.
T Consensus        93 y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~  167 (193)
T cd04382          93 WKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPD  167 (193)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCcc
Confidence            9999886      3467889999999999999999999999999999 9999999999999999999999876653

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=100.00  E-value=1.2e-39  Score=278.93  Aligned_cols=174  Identities=21%  Similarity=0.339  Sum_probs=147.0

Q ss_pred             HHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCC
Q 022764           58 VTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPE  137 (292)
Q Consensus        58 ~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~  137 (292)
                      ++.++-..++.+|.+|.+|+++|+++|+++|||||++|+.. +.++++.++.+......+.+|+|++|++||.|||+||+
T Consensus         4 ~~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPe   82 (200)
T cd04388           4 DLTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPN   82 (200)
T ss_pred             cHHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCC
Confidence            34444445689999999999999999999999999999876 67899999986433233568999999999999999999


Q ss_pred             CCCchhhhHHHHhHH-------HHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccC
Q 022764          138 PLTTFELYDEIKGAR-------SSIHAMRNTLK--KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQ  208 (292)
Q Consensus       138 PLi~~~~~~~~~~~~-------~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~  208 (292)
                      ||||.++|+.|+++.       +++..++.++.  .||+.|+.||+||+.||.+|++|++.|+|+++|||+||||+|||+
T Consensus        83 PLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~  162 (200)
T cd04388          83 PVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRF  162 (200)
T ss_pred             ccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCC
Confidence            999999999998862       46788889887  899999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhccCccccccccccCcccc
Q 022764          209 KERKPEFYRQYWNHASRSSSKNMEPATPHGEWD  241 (292)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~  241 (292)
                      +..+..+.        .++.+++|.||.+ +|.
T Consensus       163 ~~~~~~~~--------~~~~~vvE~Li~~-~~~  186 (200)
T cd04388         163 QPASSDSP--------EFHIRIIEVLITS-EWN  186 (200)
T ss_pred             Ccccccch--------hhHHHHHHHHHHH-HHh
Confidence            86543222        2345677777773 553

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=100.00  E-value=3.6e-39  Score=274.85  Aligned_cols=157  Identities=27%  Similarity=0.434  Sum_probs=141.5

Q ss_pred             CCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC-CC-CCCCCchhhhHHHHHH
Q 022764           53 GVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-AS-LPEGVNPFDVAALAKY  130 (292)
Q Consensus        53 G~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~-~~~~~d~~~va~lLK~  130 (292)
                      |.+|+....   .+..||.+|.+|++||+++|+.+|||||++|+...+++|++.++.+.. .. .++.+|+|+||++||.
T Consensus         2 ~~~l~~~~~---~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~   78 (184)
T cd04385           2 GPALEDQQL---TDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKR   78 (184)
T ss_pred             CccHHHhhh---CCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHH
Confidence            667776543   367999999999999999999999999999999999999999987642 21 2456899999999999


Q ss_pred             HHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccc
Q 022764          131 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV  204 (292)
Q Consensus       131 fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~  204 (292)
                      |||+||+||||.+.|+.|+++      ..++..++.++.+||+.|+.+|.+|+.||++|+.|++.|+|+++|||+||||+
T Consensus        79 yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~  158 (184)
T cd04385          79 FLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPT  158 (184)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccc
Confidence            999999999999999999876      35778999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCC
Q 022764          205 IMWQKERK  212 (292)
Q Consensus       205 Ll~~~~~~  212 (292)
                      |+++++.+
T Consensus       159 ll~~~~~~  166 (184)
T cd04385         159 LFQTDEHS  166 (184)
T ss_pred             cCCCCccc
Confidence            99998763

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=100.00  E-value=4e-38  Score=271.64  Aligned_cols=146  Identities=27%  Similarity=0.386  Sum_probs=130.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHH-HccC----CCCCCCC-CCchhhhHHHHHHHHhhCCCCCCc
Q 022764           68 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSM-YNQD----PNASLPE-GVNPFDVAALAKYYLASLPEPLTT  141 (292)
Q Consensus        68 ~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~-~~~~----~~~~~~~-~~d~~~va~lLK~fLr~Lp~PLi~  141 (292)
                      ..|.+|.+|++||+++|+++|||||++|+..+++++++. ++.+    ...++.. .+|+|+||++||+|||+||+||+|
T Consensus        27 ~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~  106 (203)
T cd04374          27 IGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT  106 (203)
T ss_pred             ccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence            455689999999999999999999999999999999875 5654    1233333 579999999999999999999999


Q ss_pred             hhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCCh
Q 022764          142 FELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP  213 (292)
Q Consensus       142 ~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~  213 (292)
                      +++|+.|+++      ..++..++.++.+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|+|++.++.
T Consensus       107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~  184 (203)
T cd04374         107 YELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETV  184 (203)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccH
Confidence            9999999886      45788999999999999999999999999999999999999999999999999999987654

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]

Probab=100.00  E-value=3e-37  Score=307.02  Aligned_cols=209  Identities=24%  Similarity=0.325  Sum_probs=181.8

Q ss_pred             CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC---CC--CCCCCchh
Q 022764           48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN---AS--LPEGVNPF  122 (292)
Q Consensus        48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~---~~--~~~~~d~~  122 (292)
                      +.++|||+|.+... ....+.||.+|..|+..+|.+|+++.||||++||...|..|++.+++++-   .+  .....|++
T Consensus      1154 ~~~~~GVrl~dCP~-~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvN 1232 (1973)
T KOG4407|consen 1154 PQPVLGVRLADCPT-GSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVN 1232 (1973)
T ss_pred             cCcccccccccCCc-ccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhH
Confidence            45699999998543 23578999999999999999999999999999999999999999998742   12  22357999


Q ss_pred             hhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764          123 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS  196 (292)
Q Consensus       123 ~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n  196 (292)
                      +|.++||.|||.|||||+|..+|..|+++      -+++..++.++++||.+||.||++|+.||.+|+.|+++|||-++|
T Consensus      1233 VVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprN 1312 (1973)
T KOG4407|consen 1233 VVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRN 1312 (1973)
T ss_pred             HHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            99999999999999999999999999998      368999999999999999999999999999999999999999999


Q ss_pred             hhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCC
Q 022764          197 LAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDG  261 (292)
Q Consensus       197 La~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~  261 (292)
                      ||++|||+|+|.++++...+..+|.    .||+|||.||.|.||||.++.+.+..++.+-|-+..
T Consensus      1313 LAi~FGPsiVRts~Dnm~tmVthM~----dQckIVEtLI~~~dwfF~esg~te~~~~~Q~~~~~q 1373 (1973)
T KOG4407|consen 1313 LAIMFGPSIVRTSDDNMATMVTHMS----DQCKIVETLIHYNDWFFDESGTTEDAVPEQHPADGQ 1373 (1973)
T ss_pred             eeEEeccceeccCCccHHHHhhcch----hhhhHHHHHHhhhhheeccCCCccccccccCccccC
Confidence            9999999999999998766655444    499999999999999999876666555555444433

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=100.00  E-value=3.6e-36  Score=263.26  Aligned_cols=169  Identities=21%  Similarity=0.333  Sum_probs=152.8

Q ss_pred             cCCCCCCccCCCHHHHHhhhc--------------------CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHH----
Q 022764           44 KGVASTDVFGVPIEVTVQRQQ--------------------YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKV----   99 (292)
Q Consensus        44 ~~~~~~~vFG~~L~~l~~~~~--------------------~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~----   99 (292)
                      ++...+++||.+|+++.+...                    ....||.+|.+|++||+++|+.+|||||++|+...    
T Consensus         5 ~~~~~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~   84 (220)
T cd04380           5 TGVYLPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGEL   84 (220)
T ss_pred             eeeEecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHH
Confidence            345578999999999986321                    24589999999999999999999999999999999    


Q ss_pred             HHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH-HHHHHHHHHHHh-hhcHHHHHHHHHHH
Q 022764          100 IQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-RSSIHAMRNTLK-KLSNVNFMTLEYVT  177 (292)
Q Consensus       100 i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~-~~~~~~l~~ll~-~LP~~n~~~L~~L~  177 (292)
                      ++++++.+|+|....  ...|+|++|++||.|||+||+||+|+++|+.++++ ....+.++.++. .||+.|+.+|.||+
T Consensus        85 i~~l~~~ld~~~~~~--~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~  162 (220)
T cd04380          85 LAEIRDALDTGSPFN--SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLC  162 (220)
T ss_pred             HHHHHHHHhCCCCCC--CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHH
Confidence            999999999987654  56899999999999999999999999999999987 355667889999 99999999999999


Q ss_pred             HHHHHHHhcccccCCChhhhhHhhccccccCCCCChH
Q 022764          178 ALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE  214 (292)
Q Consensus       178 ~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~  214 (292)
                      .||++|+.+++.|+|+++|||+||||+|+|++..++.
T Consensus       163 ~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~  199 (220)
T cd04380         163 SFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGG  199 (220)
T ss_pred             HHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccch
Confidence            9999999999999999999999999999999987764

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=100.00  E-value=2.1e-34  Score=243.15  Aligned_cols=147  Identities=33%  Similarity=0.573  Sum_probs=137.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC-CCCCCchhhhHHHHHHHHhhCCCCCCchhhhH
Q 022764           68 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYD  146 (292)
Q Consensus        68 ~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~  146 (292)
                      .||.++..|++||+++|+++|||||++|+..+++++++.++++...+ ....+|+|++|++||.|||+||+||+|.+.|+
T Consensus         2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~   81 (174)
T smart00324        2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE   81 (174)
T ss_pred             CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence            69999999999999999999999999999999999999999987665 35679999999999999999999999999999


Q ss_pred             HHHhHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChH
Q 022764          147 EIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE  214 (292)
Q Consensus       147 ~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~  214 (292)
                      .++++.      .++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++..+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~  155 (174)
T smart00324       82 EFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVA  155 (174)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHH
Confidence            998763      46889999999999999999999999999999999999999999999999999999987754

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]

Probab=100.00  E-value=8e-35  Score=273.61  Aligned_cols=162  Identities=27%  Similarity=0.388  Sum_probs=150.5

Q ss_pred             CCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC--CCCCCCchhhh
Q 022764           47 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDV  124 (292)
Q Consensus        47 ~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~v  124 (292)
                      +..++||+||..++++  +|..+|.+|.+++.||+++|++++||||++|.+++|+.|++.++...+.  ..++....|+|
T Consensus       296 kd~~vFGVPL~vll~r--tG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~Dv  373 (674)
T KOG2200|consen  296 KDGGVFGVPLTVLLQR--TGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDV  373 (674)
T ss_pred             CCCceeecCceeeecc--CCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHH
Confidence            4789999999999987  4679999999999999999999999999999999999999999876544  34567889999


Q ss_pred             HHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhh
Q 022764          125 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA  198 (292)
Q Consensus       125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa  198 (292)
                      |.+||+|||+||+||+|.++.+.|..+      ..++.+++.++-.||++||++|+.|+.||++|+.+++.|+||+.|||
T Consensus       374 AdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nls  453 (674)
T KOG2200|consen  374 ADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLS  453 (674)
T ss_pred             HHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhh
Confidence            999999999999999999999999988      46899999999999999999999999999999999999999999999


Q ss_pred             HhhccccccCCC
Q 022764          199 MEMAPVIMWQKE  210 (292)
Q Consensus       199 ~vf~P~Ll~~~~  210 (292)
                      +||||+||....
T Consensus       454 vcmAPsLF~l~~  465 (674)
T KOG2200|consen  454 VCMAPSLFHLNA  465 (674)
T ss_pred             hhhcchHHhhcc
Confidence            999999998654

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=100.00  E-value=1e-32  Score=231.01  Aligned_cols=143  Identities=37%  Similarity=0.585  Sum_probs=135.4

Q ss_pred             CHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHH
Q 022764           70 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIK  149 (292)
Q Consensus        70 P~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~  149 (292)
                      |.+|..|++||+++|+.++||||++|+..+++.+++.++.+.........|+|++|+++|.|||+||+||+|.+.|+.++
T Consensus         1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~   80 (169)
T cd00159           1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI   80 (169)
T ss_pred             ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence            88999999999999999999999999999999999999998776445678999999999999999999999999999999


Q ss_pred             hHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCC
Q 022764          150 GAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK  212 (292)
Q Consensus       150 ~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~  212 (292)
                      .+.      .++..++.++..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~  149 (169)
T cd00159          81 ELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD  149 (169)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence            874      478999999999999999999999999999999999999999999999999999999776

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=100.00  E-value=3e-33  Score=262.36  Aligned_cols=173  Identities=27%  Similarity=0.383  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCC-----CCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhh
Q 022764           71 HILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDVAALAKYYLASLPEPLTTFELY  145 (292)
Q Consensus        71 ~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~-----~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~  145 (292)
                      .++.+||+.|+..|++++|+||..|...+|++|...+-...     +.+..+.+|.-++++.||.|||.||+||.+++++
T Consensus       390 ~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LH  469 (812)
T KOG1451|consen  390 EFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELH  469 (812)
T ss_pred             HHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHH
Confidence            47999999999999999999999999999999887653221     1223356889999999999999999999999999


Q ss_pred             HHHHhHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChHHHHHH
Q 022764          146 DEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQY  219 (292)
Q Consensus       146 ~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~  219 (292)
                      ..|+.+.      -|+.+++.++.+||..||..|..|++||..|+.|+.+|.||..||++||||+|+|++.++-      
T Consensus       470 k~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETV------  543 (812)
T KOG1451|consen  470 KVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETV------  543 (812)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHH------
Confidence            9999873      4899999999999999999999999999999999999999999999999999999986652      


Q ss_pred             HHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHHHhhhhccccccCcc
Q 022764          220 WNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANET  289 (292)
Q Consensus       220 ~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~lIe~~~~iF~~~~~~  289 (292)
                                                             +++|++.|+|| ||+.|||||+.||...+|.
T Consensus       544 ---------------------------------------AAiMdIKFQNI-VVEILIEnyeKIF~t~Pd~  573 (812)
T KOG1451|consen  544 ---------------------------------------AAIMDIKFQNI-VVEILIENYEKIFKTKPDS  573 (812)
T ss_pred             ---------------------------------------HHHHcchhhhh-hHHHHHhhhHHHhcCCCCc
Confidence                                                   35678999999 9999999999999999885

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.98  E-value=2e-32  Score=225.70  Aligned_cols=142  Identities=36%  Similarity=0.540  Sum_probs=131.1

Q ss_pred             CHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC-CCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHH
Q 022764           70 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYDEI  148 (292)
Q Consensus        70 P~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~  148 (292)
                      |.+|..|++||+++|+.++||||++|+..+++++++.++.+.... ..+.+|+|++|++||+||++||+||+|.++|+.+
T Consensus         1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~   80 (151)
T PF00620_consen    1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF   80 (151)
T ss_dssp             EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence            889999999999999999999999999999999999999988664 4577999999999999999999999999999999


Q ss_pred             HhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCC
Q 022764          149 KGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKER  211 (292)
Q Consensus       149 ~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~  211 (292)
                      +++      ..+++.++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+|++++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~  149 (151)
T PF00620_consen   81 IAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS  149 (151)
T ss_dssp             HHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred             hhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence            964      567899999999999999999999999999999999999999999999999999998864

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=99.98  E-value=4.6e-32  Score=261.17  Aligned_cols=166  Identities=24%  Similarity=0.407  Sum_probs=152.5

Q ss_pred             CCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCC--Cchh
Q 022764           45 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG--VNPF  122 (292)
Q Consensus        45 ~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~--~d~~  122 (292)
                      ..+...+||++|+.+|+++  +..||.+|..|++.|+..|++.+||||++|+...|++|+..+|.+...++...  .|+|
T Consensus       450 ~~k~~~vFGs~Lealc~rE--~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dih  527 (650)
T KOG1450|consen  450 KPKFDKVFGSPLEALCQRE--NGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIH  527 (650)
T ss_pred             ccccCcccCccHHHHhhcc--CCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHH
Confidence            3345899999999999996  56999999999999999999999999999999999999999997766665444  7999


Q ss_pred             hhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764          123 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS  196 (292)
Q Consensus       123 ~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n  196 (292)
                      +|+++||.|||+||+||+|..+...|..+      ..+...+++++..||..|+.||+||+.||++|..|++.|+|+.+|
T Consensus       528 ai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~N  607 (650)
T KOG1450|consen  528 AITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHN  607 (650)
T ss_pred             HHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccc
Confidence            99999999999999999999999999887      347889999999999999999999999999999999999999999


Q ss_pred             hhHhhccccccCCCCC
Q 022764          197 LAMEMAPVIMWQKERK  212 (292)
Q Consensus       197 La~vf~P~Ll~~~~~~  212 (292)
                      ||+||||+|+.+-..+
T Consensus       608 LaIVfgpTl~~~~~~~  623 (650)
T KOG1450|consen  608 LAIVFGPTLIKPEQET  623 (650)
T ss_pred             eEEEeccccccccccc
Confidence            9999999999976554

>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]

Probab=99.98  E-value=8.3e-33  Score=268.98  Aligned_cols=164  Identities=26%  Similarity=0.496  Sum_probs=144.8

Q ss_pred             CCCCCCccCCCHHHHH----hhhcCCCCCCHHHHHHHHHHH-HcCCCCcCcccccCCHHHHHHHHHHHccCCCCCC---C
Q 022764           45 GVASTDVFGVPIEVTV----QRQQYGKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL---P  116 (292)
Q Consensus        45 ~~~~~~vFG~~L~~l~----~~~~~~~~vP~~l~~~i~~l~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~---~  116 (292)
                      ...+.+|||.|+..-+    +++  ...+|++|++|++||+ .+|++.|||||++|+...|+.|++.||.+.+.++   .
T Consensus       893 ~~~qTgIFG~~~~~kisv~t~~n--~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d  970 (1112)
T KOG4269|consen  893 SVKQTGIFGLPLNVKISVVTKRN--VSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMD  970 (1112)
T ss_pred             cceeceeccccceeeEeeeeeec--ccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcc
Confidence            3457899997665433    333  4599999999999999 7999999999999999999999999998854443   2


Q ss_pred             CCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhccccc
Q 022764          117 EGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLN  190 (292)
Q Consensus       117 ~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~N  190 (292)
                      +..|+|+|||+||+|||+||+||++.++|..|...      ......+..+|.+||++|..++.+|+.||+||+.++..|
T Consensus       971 ~E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvN 1050 (1112)
T KOG4269|consen  971 SEMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVN 1050 (1112)
T ss_pred             ccccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccc
Confidence            46899999999999999999999999999999765      346778899999999999999999999999999999999


Q ss_pred             CCChhhhhHhhccccccCCC
Q 022764          191 KMDARSLAMEMAPVIMWQKE  210 (292)
Q Consensus       191 kMt~~nLa~vf~P~Ll~~~~  210 (292)
                      ||+++||++||||+|.++.+
T Consensus      1051 KMnlrNlciVFsPTLniPse 1070 (1112)
T KOG4269|consen 1051 KMNLRNLCIVFSPTLNIPSE 1070 (1112)
T ss_pred             cccccceeeeecccccCcHH
Confidence            99999999999999999864

>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-31  Score=253.60  Aligned_cols=198  Identities=28%  Similarity=0.395  Sum_probs=168.4

Q ss_pred             CCCccCCCHHHHHhhh-cCCCCCCHHHHHHHH-HHH-HcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhh
Q 022764           48 STDVFGVPIEVTVQRQ-QYGKPVPHILVKCAD-YLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV  124 (292)
Q Consensus        48 ~~~vFG~~L~~l~~~~-~~~~~vP~~l~~~i~-~l~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~v  124 (292)
                      ...+||+++...-... ..+..||.++.-..+ .+. +.|+..|||||++|....++.+|+.+|.|...... ..|+|++
T Consensus       143 ~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~-~iDvH~~  221 (577)
T KOG4270|consen  143 SETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL-YIDVHCL  221 (577)
T ss_pred             hhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc-cCCHHHH
Confidence            5779999888764322 224457999988887 655 68899999999999999999999999988765544 6899999


Q ss_pred             HHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhh
Q 022764          125 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA  198 (292)
Q Consensus       125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa  198 (292)
                      |++||.|||+||+|++++++|+.|+.+      +++.+.++.++..||+.|+..|.|+++||+.|+++++.||||++|||
T Consensus       222 agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlA  301 (577)
T KOG4270|consen  222 AGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLA  301 (577)
T ss_pred             HHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhce
Confidence            999999999999999999999998865      45788999999999999999999999999999999999999999999


Q ss_pred             HhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccc
Q 022764          199 MEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESE  248 (292)
Q Consensus       199 ~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~  248 (292)
                      +||||+|++.++  +....++...+++....+++..|.+.+|+|.++..-
T Consensus       302 iV~gPNl~~~~~--p~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~~  349 (577)
T KOG4270|consen  302 IVFGPNLLWMKD--PLTALMYAVQVSNFLKGLIEKTLEERDTSFPGELEF  349 (577)
T ss_pred             eEecCCccccCC--hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence            999999999997  333344444455666778999999999999966443

>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=99.96  E-value=1.2e-29  Score=235.12  Aligned_cols=164  Identities=28%  Similarity=0.453  Sum_probs=146.1

Q ss_pred             CCCCCCccCCCHHHHHhhhc-------C---CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCC---
Q 022764           45 GVASTDVFGVPIEVTVQRQQ-------Y---GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP---  111 (292)
Q Consensus        45 ~~~~~~vFG~~L~~l~~~~~-------~---~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~---  111 (292)
                      ......+||+++.+......       .   -..||.++.+|+.|++++|+.+.||||++|+..++++|++.++.++   
T Consensus        60 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~  139 (412)
T KOG2710|consen   60 RVLDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYG  139 (412)
T ss_pred             cccceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCcccc
Confidence            34456677777766643221       1   2589999999999999999999999999999999999999999984   


Q ss_pred             -CCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH-----H-HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 022764          112 -NASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-----R-SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVS  184 (292)
Q Consensus       112 -~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~-~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~  184 (292)
                       +...++++++|++|++||+|||+||+||||.++|+.|+..     . +++..++.++..||+.|+.+|.+++.||+.++
T Consensus       140 ~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a  219 (412)
T KOG2710|consen  140 IDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVA  219 (412)
T ss_pred             ccccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhh
Confidence             5556788999999999999999999999999999999876     3 78999999999999999999999999999999


Q ss_pred             hccccc-----------CCChhhhhHhhccccccC
Q 022764          185 QKSLLN-----------KMDARSLAMEMAPVIMWQ  208 (292)
Q Consensus       185 ~~~~~N-----------kMt~~nLa~vf~P~Ll~~  208 (292)
                      .|+..|           +|+++|||+||+|+++..
T Consensus       220 ~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k  254 (412)
T KOG2710|consen  220 SHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYK  254 (412)
T ss_pred             cccccccccccccccCcccchhhhhhhhcchhhhc
Confidence            999888           999999999999999995

>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=99.96  E-value=2.6e-30  Score=235.47  Aligned_cols=171  Identities=28%  Similarity=0.519  Sum_probs=155.8

Q ss_pred             hcCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcC-CCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCch
Q 022764           43 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP  121 (292)
Q Consensus        43 ~~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~g-l~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~  121 (292)
                      .+....+..||++|+-+.+....+..+|.++..|+++|..+| +.+||+||.+++.+.+.++...+++|..+++..-.|+
T Consensus       245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~  324 (467)
T KOG4406|consen  245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL  324 (467)
T ss_pred             CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence            334456779999999998877678899999999999999999 9999999999999999999999999999987544569


Q ss_pred             hhhHHHHHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHhcccccCCChh
Q 022764          122 FDVAALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKK-LSNVNFMTLEYVTALLLRVSQKSLLNKMDAR  195 (292)
Q Consensus       122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~-LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~  195 (292)
                      |..|.++|.|||+||+||++.++|..+.+.     ..+...+.++++. ||++|+.++++++.||.+|++|+..|+||+.
T Consensus       325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~s  404 (467)
T KOG4406|consen  325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTAS  404 (467)
T ss_pred             hhhHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccc
Confidence            999999999999999999999999998665     4577888999987 9999999999999999999999999999999


Q ss_pred             hhhHhhccccccCCCCCh
Q 022764          196 SLAMEMAPVIMWQKERKP  213 (292)
Q Consensus       196 nLa~vf~P~Ll~~~~~~~  213 (292)
                      |||.||||+++++.+.+.
T Consensus       405 NLa~vfGpnl~w~~~~s~  422 (467)
T KOG4406|consen  405 NLAVVFGPNLLWAQDESL  422 (467)
T ss_pred             cceeeecccccccccccc
Confidence            999999999999986653

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=99.95  E-value=1.1e-27  Score=232.48  Aligned_cols=172  Identities=25%  Similarity=0.336  Sum_probs=148.1

Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC-CCC-CCCchhhhHHHHHHHHhhCCCCCCch
Q 022764           65 YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SLP-EGVNPFDVAALAKYYLASLPEPLTTF  142 (292)
Q Consensus        65 ~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~~-~~~d~~~va~lLK~fLr~Lp~PLi~~  142 (292)
                      .+..||.++..||.|+.++|+..|||||++|...++.+|.+.|.++... .+. .+..+.+|+++||+|||+|++||+|.
T Consensus       723 s~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~  802 (1186)
T KOG1117|consen  723 SKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTK  802 (1186)
T ss_pred             cCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccch
Confidence            4679999999999999999999999999999999999999999877653 222 24679999999999999999999999


Q ss_pred             hhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChHHH
Q 022764          143 ELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFY  216 (292)
Q Consensus       143 ~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~  216 (292)
                      ++|..|+++      .+++....++|..||..||.||+.|+.||++|..+++.|+|+++|||.||||+||.....+.   
T Consensus       803 ~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqde---  879 (1186)
T KOG1117|consen  803 ELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQDE---  879 (1186)
T ss_pred             hhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCch---
Confidence            999999987      46899999999999999999999999999999999999999999999999999998875552   


Q ss_pred             HHHHHHhccCccccccccccCccccccccccc
Q 022764          217 RQYWNHASRSSSKNMEPATPHGEWDMLADESE  248 (292)
Q Consensus       217 ~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~  248 (292)
                               ++..|++.||+++...|..++++
T Consensus       880 ---------hevnVledLingYvvVF~v~eee  902 (1186)
T KOG1117|consen  880 ---------HEVNVLEDLINGYVVVFEVDEEE  902 (1186)
T ss_pred             ---------hhhhHHHHHhcCceEEEEecHHH
Confidence                     12335555555555555555443

>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]

Probab=99.94  E-value=3.3e-27  Score=242.15  Aligned_cols=160  Identities=25%  Similarity=0.462  Sum_probs=149.8

Q ss_pred             ccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHH
Q 022764           51 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKY  130 (292)
Q Consensus        51 vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~  130 (292)
                      .||..|.+++.++  +..||.++..|+.+|+.+|+.+|||||++|...+++.|...++.+.......+.|+|++++++|+
T Consensus       602 ~fG~~l~~~~~~e--~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~  679 (918)
T KOG1453|consen  602 LFGVSLSELARYE--PSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKL  679 (918)
T ss_pred             cccHHHHHhhccC--CCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHH
Confidence            9999999998875  56999999999999999999999999999999999999999998875556678999999999999


Q ss_pred             HHhhCCCCCCchhhhHHHHhHH------------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhh
Q 022764          131 YLASLPEPLTTFELYDEIKGAR------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA  198 (292)
Q Consensus       131 fLr~Lp~PLi~~~~~~~~~~~~------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa  198 (292)
                      |||+||+||+++..|+.|+++.            ..+..+..++..||+.|+.+|.+|+.||.+|+.+++.|+|++.|||
T Consensus       680 yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nla  759 (918)
T KOG1453|consen  680 YLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLA  759 (918)
T ss_pred             HHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCcc
Confidence            9999999999999999998872            2678899999999999999999999999999999999999999999


Q ss_pred             HhhccccccCCCCC
Q 022764          199 MEMAPVIMWQKERK  212 (292)
Q Consensus       199 ~vf~P~Ll~~~~~~  212 (292)
                      +||||||+|+++..
T Consensus       760 ivF~Ptllr~~d~~  773 (918)
T KOG1453|consen  760 IVFAPTLLRPPDGT  773 (918)
T ss_pred             ccccCcccCCCCCc
Confidence            99999999999765

>KOG3564 consensus GTPase-activating protein [General function prediction only]

Probab=99.94  E-value=9.8e-27  Score=214.45  Aligned_cols=171  Identities=20%  Similarity=0.303  Sum_probs=147.1

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhh
Q 022764           66 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELY  145 (292)
Q Consensus        66 ~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~  145 (292)
                      ..-||.+|..|+..||.+|+.++||||++|....+++|+..+-++.........|+|++|+++|.|||+|.+||||....
T Consensus       359 aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~  438 (604)
T KOG3564|consen  359 APMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLR  438 (604)
T ss_pred             cccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHH
Confidence            35899999999999999999999999999999999999999998887665567899999999999999999999999999


Q ss_pred             HHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChHHHHHH
Q 022764          146 DEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQY  219 (292)
Q Consensus       146 ~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~  219 (292)
                      ..|..+      ...+.++...+..||..||.||.|||-|+.+||+ ++.|+|+..|||.+|||+++..+.+++....+ 
T Consensus       439 rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~~~~-  516 (604)
T KOG3564|consen  439 RDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQVTM-  516 (604)
T ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccHhHH-
Confidence            999887      3467888999999999999999999999999999 88999999999999999999977665543322 


Q ss_pred             HHHhccCccccccccccCcc
Q 022764          220 WNHASRSSSKNMEPATPHGE  239 (292)
Q Consensus       220 ~~~~~~~~~~i~e~li~~~~  239 (292)
                      ..++ ..+.++++.|..-..
T Consensus       517 l~dv-~~q~rvmkaLlelp~  535 (604)
T KOG3564|consen  517 LQDV-KTQPRVMKALLELPL  535 (604)
T ss_pred             HHhh-hhhHHHHHHHHhCCH
Confidence            2222 225567777665444

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=99.86  E-value=2.1e-21  Score=171.64  Aligned_cols=160  Identities=19%  Similarity=0.187  Sum_probs=141.8

Q ss_pred             CCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC-CC--CCCchhhhH
Q 022764           49 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LP--EGVNPFDVA  125 (292)
Q Consensus        49 ~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~--~~~d~~~va  125 (292)
                      .++||.+|+.+++++  ...-|.++.+|++.||++|++.-|+|+++|+..+-+.|+..|+.+.... +.  .--|.++++
T Consensus       182 rgvfG~~L~~lV~RE--~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvIt  259 (442)
T KOG1452|consen  182 RGVFGISLSRLVQRE--PESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVIT  259 (442)
T ss_pred             ccccchhhHhHhhcC--CCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceee
Confidence            459999999999986  4588999999999999999999999999999999999999998765432 21  135788899


Q ss_pred             HHHHHHHhhCCCCCCchhhhHHHHhHH---------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764          126 ALAKYYLASLPEPLTTFELYDEIKGAR---------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS  196 (292)
Q Consensus       126 ~lLK~fLr~Lp~PLi~~~~~~~~~~~~---------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n  196 (292)
                      +++|.|||||||||++...++...++.         .....+-.++..|+.+++.+|-.++.||..|..+++.|+||+..
T Consensus       260 g~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~  339 (442)
T KOG1452|consen  260 GDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTR  339 (442)
T ss_pred             cccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHH
Confidence            999999999999999999888877762         35677888999999999999999999999999999999999999


Q ss_pred             hhHhhccccccCCC
Q 022764          197 LAMEMAPVIMWQKE  210 (292)
Q Consensus       197 La~vf~P~Ll~~~~  210 (292)
                      ||.+|||-||-+.+
T Consensus       340 Ls~i~~P~L~~~~~  353 (442)
T KOG1452|consen  340 LSLIFAPLLFFCLD  353 (442)
T ss_pred             HHHHhhhhHHHhhc
Confidence            99999999987654

>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]

Probab=99.81  E-value=1.7e-20  Score=184.50  Aligned_cols=156  Identities=28%  Similarity=0.446  Sum_probs=141.6

Q ss_pred             CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCC-CCchhhhHH
Q 022764           48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVAA  126 (292)
Q Consensus        48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~~va~  126 (292)
                      ....||.+|......   ...+|.++.+|++||+..|+.+||+||++|+......+++.|.++...++.+ +..+|++|+
T Consensus       914 ~s~~~~~~l~~~~t~---~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vag  990 (1100)
T KOG4271|consen  914 ESNYFLTPLQDAVTS---EKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAG  990 (1100)
T ss_pred             hhhccCCcccccccC---CcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccC
Confidence            467899999988765   5689999999999999999999999999999999999999999877776543 467999999


Q ss_pred             HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764          127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME  200 (292)
Q Consensus       127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v  200 (292)
                      .+|.|+.+||+||+|+++...+.++      ..++..++..+..||+.|+.+++|++.||.+|+.....|.||.+||++|
T Consensus       991 Alksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~ 1070 (1100)
T KOG4271|consen  991 ALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSIC 1070 (1100)
T ss_pred             cchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccccc
Confidence            9999999999999999988877766      3467778999999999999999999999999999999999999999999


Q ss_pred             hccccc
Q 022764          201 MAPVIM  206 (292)
Q Consensus       201 f~P~Ll  206 (292)
                      |+|.|+
T Consensus      1071 ~~~~~~ 1076 (1100)
T KOG4271|consen 1071 FPTLLM 1076 (1100)
T ss_pred             ccchHH
Confidence            998887

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.80  E-value=7.8e-19  Score=151.31  Aligned_cols=182  Identities=19%  Similarity=0.234  Sum_probs=144.0

Q ss_pred             CccCCCHHHHHhhhcCCCCCCHHHHHHH--HHHHHcCCCC--cCcccccCCHHHHHHHHHHHccCCCCCCCC-CCchh--
Q 022764           50 DVFGVPIEVTVQRQQYGKPVPHILVKCA--DYLVLSGLNS--QFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPF--  122 (292)
Q Consensus        50 ~vFG~~L~~l~~~~~~~~~vP~~l~~~i--~~l~~~gl~~--eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~--  122 (292)
                      .+||.|+-+-+.+  .+...|..+..-.  +++..+.++.  -|+||+++....+...++.++..++....+ +...+  
T Consensus        20 ~l~glp~Ld~vl~--~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~   97 (235)
T cd04405          20 QLVGLPLLEELLD--PALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQ   97 (235)
T ss_pred             HHcCCccHHHHhc--ccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccc
Confidence            4899987766655  3557777776555  5555555544  699999999999999999998776541111 11112  


Q ss_pred             ---------hhHHHHHHHHhhCCCCCCchhhhHHHHhH---------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 022764          123 ---------DVAALAKYYLASLPEPLTTFELYDEIKGA---------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVS  184 (292)
Q Consensus       123 ---------~va~lLK~fLr~Lp~PLi~~~~~~~~~~~---------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~  184 (292)
                               +||.++++||++|||||+|..+|+.+..+         +.++++++.++..||++||..|+.|+.||++++
T Consensus        98 ~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va  177 (235)
T cd04405          98 HDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAA  177 (235)
T ss_pred             cccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence                     79999999999999999999999988766         347899999999999999999999999999999


Q ss_pred             hcc-------cccCCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCC
Q 022764          185 QKS-------LLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIP  257 (292)
Q Consensus       185 ~~~-------~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p  257 (292)
                      .+.       ..|+|   +++..|+|+++++++-+..                                           
T Consensus       178 ~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~~~-------------------------------------------  211 (235)
T cd04405         178 KNDMPRLHKEIENRM---LVKQTFSRAILCSKDLDEG-------------------------------------------  211 (235)
T ss_pred             hcCccccccccchHH---HHHHHhhhHhcCccccCHH-------------------------------------------
Confidence            984       26676   8999999999999954411                                           


Q ss_pred             CCCCCCCCCchHHHHHHHHhhhhccccccCc
Q 022764          258 LDDGMPIDFGAIEVVQCLMEQHNAIFTDANE  288 (292)
Q Consensus       258 ~~~~~~~~~~~~~vv~~lIe~~~~iF~~~~~  288 (292)
                               +...+|.+||+|+.+||.++..
T Consensus       212 ---------~~~~LV~Fmmd~~~~ifkvP~~  233 (235)
T cd04405         212 ---------LADLLVLFLMDHHQDIFKVPGS  233 (235)
T ss_pred             ---------HHHHHHHHHHHcchhhhcCCcc
Confidence                     2233899999999999999764

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=99.80  E-value=6.3e-20  Score=175.38  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=148.9

Q ss_pred             CCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHH
Q 022764           47 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA  126 (292)
Q Consensus        47 ~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~  126 (292)
                      .+..+||.||..+|...    ..|.-+.++.-++-..|..++||||..++...++.+++.++.|.++.+ +...+++.|.
T Consensus        78 ~~~~Lfg~pl~nic~~~----~lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l-~~~~i~v~a~  152 (741)
T KOG4724|consen   78 ADSFLFGWPLTNICVHF----RLPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGL-KSGEIVVDAA  152 (741)
T ss_pred             CCccccCccchhhcccC----CCCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccc-cccceEEeeh
Confidence            46789999999998752    499999999999999999999999999999999999999999988875 4578999999


Q ss_pred             HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764          127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME  200 (292)
Q Consensus       127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v  200 (292)
                      ++|.|||.+|.-++..++|+.|...      .+++++++.+..+||..|..+|.+|...| .+..++..|.|+.-|||+|
T Consensus       153 v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~c  231 (741)
T KOG4724|consen  153 VDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQC  231 (741)
T ss_pred             hhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHH
Confidence            9999999999999999999999765      56899999999999999999999999999 8999999999999999999


Q ss_pred             hccccccCCCCChH
Q 022764          201 MAPVIMWQKERKPE  214 (292)
Q Consensus       201 f~P~Ll~~~~~~~~  214 (292)
                      ++|++++....+..
T Consensus       232 v~p~~l~~~~~~s~  245 (741)
T KOG4724|consen  232 VNPIKLKVLTRTSS  245 (741)
T ss_pred             hcchhcccccccCh
Confidence            99999998866644

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.77  E-value=4.4e-18  Score=145.14  Aligned_cols=143  Identities=20%  Similarity=0.272  Sum_probs=124.2

Q ss_pred             CHHHHHHHHHHHHcCCCCcCc---ccccCCHHHHHHH-HHHHccCCCCCC--------CCCCchhhhHHHHHHHHhhCCC
Q 022764           70 PHILVKCADYLVLSGLNSQFL---FKAEGDKKVIQHL-VSMYNQDPNASL--------PEGVNPFDVAALAKYYLASLPE  137 (292)
Q Consensus        70 P~~l~~~i~~l~~~gl~~eGI---FR~~g~~~~i~~l-~~~~~~~~~~~~--------~~~~d~~~va~lLK~fLr~Lp~  137 (292)
                      -.++..|.+.|+.+|+++++|   ||.+++...++.+ +..++.+.....        ....|+|+++++||.|++.||+
T Consensus         7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~   86 (198)
T cd04401           7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG   86 (198)
T ss_pred             HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence            456889999999999999999   9999999999997 566665532211        1247999999999999999999


Q ss_pred             CCCch-hhhHHHHhHHH----HHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCC
Q 022764          138 PLTTF-ELYDEIKGARS----SIHAMRNTLKKL--SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE  210 (292)
Q Consensus       138 PLi~~-~~~~~~~~~~~----~~~~l~~ll~~L--P~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~  210 (292)
                      ++++. +.|..|...+.    ...+++.++..+  |+.|..++..++.+|.+|+.|+..|+|+..+|+.+|||.+|..+.
T Consensus        87 ~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~  166 (198)
T cd04401          87 SKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPT  166 (198)
T ss_pred             CccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCC
Confidence            99999 99999998643    256888999888  899999999999999999999999999999999999999999876


Q ss_pred             CC
Q 022764          211 RK  212 (292)
Q Consensus       211 ~~  212 (292)
                      ..
T Consensus       167 ~~  168 (198)
T cd04401         167 GA  168 (198)
T ss_pred             cc
Confidence            53

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]

Probab=99.25  E-value=1.3e-11  Score=113.50  Aligned_cols=163  Identities=21%  Similarity=0.316  Sum_probs=132.4

Q ss_pred             CCCCCCccCCCHHHHHhhhc--CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC----------
Q 022764           45 GVASTDVFGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN----------  112 (292)
Q Consensus        45 ~~~~~~vFG~~L~~l~~~~~--~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~----------  112 (292)
                      |...+++-|.++...+..++  .+...|.++...+.+.+.+|.-++|++|.+..+++.+.++..-..+..          
T Consensus        45 g~~~~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~  124 (514)
T KOG4370|consen   45 GVAIKRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAA  124 (514)
T ss_pred             CCcCChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHH
Confidence            45566777777776654443  366788899999999999999999999999988776666554332110          


Q ss_pred             ------------------------------CCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHH
Q 022764          113 ------------------------------ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIH  156 (292)
Q Consensus       113 ------------------------------~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~  156 (292)
                                                    ..-.++++|.+||+++|.|||+||+||++.++...|..+      ....+
T Consensus       125 ~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~  204 (514)
T KOG4370|consen  125 GLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQN  204 (514)
T ss_pred             hHHHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHH
Confidence                                          001135778999999999999999999999999998876      34678


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccccc
Q 022764          157 AMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMW  207 (292)
Q Consensus       157 ~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~  207 (292)
                      .++.++..||..||.++.++.-|+..|....-.|||++.||+++.+|++=-
T Consensus       205 efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~  255 (514)
T KOG4370|consen  205 EFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQE  255 (514)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHH
Confidence            899999999999999999999999999998889999999999999998643

>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]

Probab=99.25  E-value=1.7e-11  Score=121.32  Aligned_cols=145  Identities=23%  Similarity=0.262  Sum_probs=127.6

Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCCcCccc-ccCCHHHHHHHHHHHccCCCCCC-CCCCchhhhHHHHHHHHhhCCCC-CCc
Q 022764           65 YGKPVPHILVKCADYLVLSGLNSQFLFK-AEGDKKVIQHLVSMYNQDPNASL-PEGVNPFDVAALAKYYLASLPEP-LTT  141 (292)
Q Consensus        65 ~~~~vP~~l~~~i~~l~~~gl~~eGIFR-~~g~~~~i~~l~~~~~~~~~~~~-~~~~d~~~va~lLK~fLr~Lp~P-Li~  141 (292)
                      ++..+|.++..|+.+++.+|+..+|||| ++|....+...+.++.++..... ..+.+... |.++|.|++.+.+| .++
T Consensus       214 ~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~  292 (640)
T KOG3565|consen  214 YFQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFP  292 (640)
T ss_pred             CcccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCc
Confidence            4789999999999999999999999999 99999999999999988844332 22344455 99999999999999 999


Q ss_pred             hhhhHHHHhHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCC
Q 022764          142 FELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE  210 (292)
Q Consensus       142 ~~~~~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~  210 (292)
                      ++.+..+.+..      ++...++.++..+|..+..++.+++.|+...+..++.|.|++.|+++||||.++..+.
T Consensus       293 ~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e  367 (640)
T KOG3565|consen  293 FEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPE  367 (640)
T ss_pred             cccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcc
Confidence            99999988773      3447788899999999999999999999999999999999999999999999987664

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=98.94  E-value=8.9e-09  Score=97.38  Aligned_cols=145  Identities=17%  Similarity=0.280  Sum_probs=118.1

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCcc---cccCCHHHHHHHHH-HHccCCCCC---------CCCCCchhhhHHHHHHHHhh
Q 022764           68 PVPHILVKCADYLVLSGLNSQFLF---KAEGDKKVIQHLVS-MYNQDPNAS---------LPEGVNPFDVAALAKYYLAS  134 (292)
Q Consensus        68 ~vP~~l~~~i~~l~~~gl~~eGIF---R~~g~~~~i~~l~~-~~~~~~~~~---------~~~~~d~~~va~lLK~fLr~  134 (292)
                      .|-.+|..|.+.|..+|+++++||   |-.-+...++.+.. .+..+....         .....++|+++++||-.+..
T Consensus         7 ev~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~R   86 (420)
T PF08101_consen    7 EVKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSR   86 (420)
T ss_pred             HHHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            344578899999999999999997   77778888877655 444443321         12357999999999999999


Q ss_pred             CCCCCCchhhhHHHHhHHH----HHHHHHHHH-hhhc-HHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccC
Q 022764          135 LPEPLTTFELYDEIKGARS----SIHAMRNTL-KKLS-NVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQ  208 (292)
Q Consensus       135 Lp~PLi~~~~~~~~~~~~~----~~~~l~~ll-~~LP-~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~  208 (292)
                      ||+.+++++.|..|.....    ...+...++ ..|| +.|..++..++.+|..|+.|+..|+|+...||..+|+-.|..
T Consensus        87 Lp~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~  166 (420)
T PF08101_consen   87 LPGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH  166 (420)
T ss_pred             cCCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence            9999999999999987743    245566655 4564 777899999999999999999999999999999999999987


Q ss_pred             CCCC
Q 022764          209 KERK  212 (292)
Q Consensus       209 ~~~~  212 (292)
                      +...
T Consensus       167 ~~~~  170 (420)
T PF08101_consen  167 PDFG  170 (420)
T ss_pred             CCcc
Confidence            7655

>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=98.07  E-value=2.6e-06  Score=82.99  Aligned_cols=159  Identities=13%  Similarity=0.082  Sum_probs=121.5

Q ss_pred             CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHH-----HHHccCCCCCCCCCCchh
Q 022764           48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLV-----SMYNQDPNASLPEGVNPF  122 (292)
Q Consensus        48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~-----~~~~~~~~~~~~~~~d~~  122 (292)
                      ....||+||...+..   +...|..+......+.+.+..++++||......-+.+-.     +....+..++. +...+|
T Consensus       413 ~kv~fdaPlS~~c~d---~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv-~sspv~  488 (741)
T KOG4724|consen  413 AKVPFDAPLSVFCAD---QGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDV-PSSPVH  488 (741)
T ss_pred             hhCcCCCchhhcccc---cCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccC-CCCCch
Confidence            466899999998875   456777777777888889999999998854443332211     12222333443 457899


Q ss_pred             hhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHH--------HHhhhcHHHHHHHHHHHHHHHHHHhccc
Q 022764          123 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRN--------TLKKLSNVNFMTLEYVTALLLRVSQKSL  188 (292)
Q Consensus       123 ~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~--------ll~~LP~~n~~~L~~L~~~L~~V~~~~~  188 (292)
                      ++++++|.|+|.+|..++..+...+..++      .++.++++.        .....|..+.........-...+..++.
T Consensus       489 taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse  568 (741)
T KOG4724|consen  489 TAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSE  568 (741)
T ss_pred             HHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccc
Confidence            99999999999999999999999888776      357888888        7777888877777776666677778899


Q ss_pred             ccCCChhhhhHhhccccccCCC
Q 022764          189 LNKMDARSLAMEMAPVIMWQKE  210 (292)
Q Consensus       189 ~NkMt~~nLa~vf~P~Ll~~~~  210 (292)
                      .+.|+..|++.|-.|+......
T Consensus       569 ~~s~dsSn~~~csrpn~~tvd~  590 (741)
T KOG4724|consen  569 ETSNDSSNPGFCSRPNALTVDD  590 (741)
T ss_pred             cccccccccCCCCCccccchhh
Confidence            9999999999999988876553

>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]

Probab=96.50  E-value=0.00019  Score=69.27  Aligned_cols=189  Identities=15%  Similarity=0.137  Sum_probs=128.1

Q ss_pred             HHHHhcCCCCCCccCCCHHHHHhhhcCCCCCCH-HHHHHHHHHHH---cC--CCCcCcccccCCHHHHHHHHHHHccCCC
Q 022764           39 IERWQKGVASTDVFGVPIEVTVQRQQYGKPVPH-ILVKCADYLVL---SG--LNSQFLFKAEGDKKVIQHLVSMYNQDPN  112 (292)
Q Consensus        39 ~~~~~~~~~~~~vFG~~L~~l~~~~~~~~~vP~-~l~~~i~~l~~---~g--l~~eGIFR~~g~~~~i~~l~~~~~~~~~  112 (292)
                      +..--........||.-|......  .|+.+|. .+.+||..+..   ++  .+..|.|++..+            .|..
T Consensus       197 meTL~sl~~~~~~~gl~ltr~~~~--~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D------------~gae  262 (670)
T KOG1449|consen  197 METLSSLVDSNLNCGLVLTRMEVG--LGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVED------------EGAE  262 (670)
T ss_pred             HHHHhcccccCccccceecceeec--cccccchhhhccchhccccchhccCCcccCcceecccc------------cccc
Confidence            444444555677888887766443  4779999 88888887765   22  344566666543            3333


Q ss_pred             CC---CCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccc
Q 022764          113 AS---LPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLL  189 (292)
Q Consensus       113 ~~---~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~  189 (292)
                      .+   +....|+..+...++.|.+.+|.|+.. ..|..=-.....++...-....+++.|+.+-.+|..||.+.+.-.  
T Consensus       263 ~d~~af~~p~di~v~S~d~dp~s~Q~~pp~~~-~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~--  339 (670)
T KOG1449|consen  263 VDGEAFRWPSDIVVESWDMDPYSRQLPPPYPK-EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK--  339 (670)
T ss_pred             ccccccCCccceeeeccccChhhhhcCCCCcc-cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc--
Confidence            32   222468888999999999999999544 333322222334555666666799999999999999999888732  


Q ss_pred             cCCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccc
Q 022764          190 NKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEM  250 (292)
Q Consensus       190 NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~  250 (292)
                           .+++|++.|+++|++. +......++-.-...+..++.+.|++++-.|..+-+++.
T Consensus       340 -----~s~~I~~~~~~~r~pp-tL~~~~~h~~~~~~~~~~~~~~~~e~s~~~~~~~i~~ed  394 (670)
T KOG1449|consen  340 -----KSLAIVWSPNLFRPPP-TLNGADTHLLSGLNVHTAICDFFIENSESLFVNDIDEED  394 (670)
T ss_pred             -----ccceeecCCCCCCCCC-CCCchhhhhcccCCcceeecccchhhhhhhhhcccChhh
Confidence                 7999999999999886 322233333333445667888888888888876666554

>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]

Probab=96.41  E-value=0.0015  Score=68.40  Aligned_cols=162  Identities=17%  Similarity=0.183  Sum_probs=125.5

Q ss_pred             ccCCCHHHHHhhhcCCCCCCHHHHH-HHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC--CC--CC--CCchhh
Q 022764           51 VFGVPIEVTVQRQQYGKPVPHILVK-CADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SL--PE--GVNPFD  123 (292)
Q Consensus        51 vFG~~L~~l~~~~~~~~~vP~~l~~-~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~--~~--~~d~~~  123 (292)
                      ++|+++..+..........|.++.. +.......|....|+||.++....+...+..++.....  +.  ..  ..++..
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~  541 (918)
T KOG1453|consen  462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL  541 (918)
T ss_pred             ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence            8888887763212235677888888 77777788999999999999999999999998866521  11  01  223455


Q ss_pred             hHHHHHHHHhhC--CCCCCchhhhHHHHhH----------------------HHHH-------HHHHHHHh----hhcHH
Q 022764          124 VAALAKYYLASL--PEPLTTFELYDEIKGA----------------------RSSI-------HAMRNTLK----KLSNV  168 (292)
Q Consensus       124 va~lLK~fLr~L--p~PLi~~~~~~~~~~~----------------------~~~~-------~~l~~ll~----~LP~~  168 (292)
                      ..++++.|+|.+  |.+....+.|..+...                      .+++       ..+..+..    .+|..
T Consensus       542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i  621 (918)
T KOG1453|consen  542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFI  621 (918)
T ss_pred             ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHH
Confidence            667999999999  9998888888887732                      1234       67788888    89999


Q ss_pred             HHHHHHHHHHHHHHHHhccccc-CCCh-hhhhHhhcc----ccccCCCCC
Q 022764          169 NFMTLEYVTALLLRVSQKSLLN-KMDA-RSLAMEMAP----VIMWQKERK  212 (292)
Q Consensus       169 n~~~L~~L~~~L~~V~~~~~~N-kMt~-~nLa~vf~P----~Ll~~~~~~  212 (292)
                      ...++.++..|+.++......| .|+. +||..+|++    +.+...+..
T Consensus       622 ~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih  671 (918)
T KOG1453|consen  622 LKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIH  671 (918)
T ss_pred             HHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChH
Confidence            9999999999999999988888 7887 999999999    666666544

>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]

Probab=95.92  E-value=0.0016  Score=63.01  Aligned_cols=68  Identities=22%  Similarity=0.144  Sum_probs=53.2

Q ss_pred             HHHHHHHHhcccccCCChhhhhHhhccccccCCCCChHHHH------HHHHHhccCccccccccccCccccccccc
Q 022764          177 TALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYR------QYWNHASRSSSKNMEPATPHGEWDMLADE  246 (292)
Q Consensus       177 ~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~------~~~~~~~~~~~~i~e~li~~~~~~f~~~~  246 (292)
                      ++||..|+.++..+.|.+.|||+||+|+|+|++..+.....      ..+  ..+.++.|+|+..++-|.+|+.--
T Consensus         1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~--avq~qsvV~EfilnhvDvlF~~~a   74 (670)
T KOG1449|consen    1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFS--AVQAQSVVSEFILNHVDVLFLPTA   74 (670)
T ss_pred             CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHH--HHHhhhhhhhhcccccceecCCcC
Confidence            36899999999999999999999999999998865543332      111  234567789999999999988543

>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]

Probab=95.84  E-value=0.012  Score=60.09  Aligned_cols=141  Identities=13%  Similarity=0.038  Sum_probs=99.1

Q ss_pred             CCCCHHHHHHHHHHHHcCCCCcC---cccccC-CHHHHHHHHHHHcc-CCCC-CCCCCCchh--hhHHHHH--HHHhhCC
Q 022764           67 KPVPHILVKCADYLVLSGLNSQF---LFKAEG-DKKVIQHLVSMYNQ-DPNA-SLPEGVNPF--DVAALAK--YYLASLP  136 (292)
Q Consensus        67 ~~vP~~l~~~i~~l~~~gl~~eG---IFR~~g-~~~~i~~l~~~~~~-~~~~-~~~~~~d~~--~va~lLK--~fLr~Lp  136 (292)
                      ..-|.+..+-+.+|+..|+..||   |-|.+. +...|+.-...++. |... ...+..+||  .|...++  .-||..+
T Consensus       369 d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr~~~  448 (1100)
T KOG4271|consen  369 DGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLRQQG  448 (1100)
T ss_pred             cCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhhhcc
Confidence            47799999999999999999999   889988 66666665555542 3322 222335788  4677777  6778777


Q ss_pred             CCCCchhhhHHHHhH--------HHHHHHHHHHH-hh--hcHHHHH----HHHHHHHHHHHHHhcccccCCChh-hhhHh
Q 022764          137 EPLTTFELYDEIKGA--------RSSIHAMRNTL-KK--LSNVNFM----TLEYVTALLLRVSQKSLLNKMDAR-SLAME  200 (292)
Q Consensus       137 ~PLi~~~~~~~~~~~--------~~~~~~l~~ll-~~--LP~~n~~----~L~~L~~~L~~V~~~~~~NkMt~~-nLa~v  200 (292)
                      ..+.+......+..+        ..++..+...+ ..  .|.+|+.    ++..++..+..++.++..|.|++. .-+.|
T Consensus       449 ~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aC  528 (1100)
T KOG4271|consen  449 QQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAAC  528 (1100)
T ss_pred             cccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHh
Confidence            776666554444332        23555555444 34  5877776    666666667777788999999998 89999


Q ss_pred             hcc-cccc
Q 022764          201 MAP-VIMW  207 (292)
Q Consensus       201 f~P-~Ll~  207 (292)
                      .+| .+++
T Consensus       529 kS~~llL~  536 (1100)
T KOG4271|consen  529 KSPHLLLR  536 (1100)
T ss_pred             cChHHHHh
Confidence            999 4666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		3e-15
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		4e-15
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		6e-15
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		2e-13
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-13
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		3e-13
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-13
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		6e-13
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		7e-10
2ovj_A	201	The Crystal Structure Of The Human Rac Gtpase Activ		5e-07
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		6e-07
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		3e-06
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		5e-06
2osa_A	202	The Rho-Gap Domain Of Human N-Chimaerin Length = 20		9e-06
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		1e-05
3msx_B	201	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-05
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		6e-05

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 19/176 (10%)
Query: 49  TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 108
           ++ FG+P++  V  +   KP+P  + KC +++  +GL ++ L++  G+K    ++   ++
Sbjct: 20  SNYFGMPLQDLVTAE---KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFD 76
Query: 109 QDPN---ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSIHAMR 159
           QD N    S+   VN   VA   K + A LP+PL  + L+ E      I      +HA++
Sbjct: 77  QDHNINLVSMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK 134
Query: 160 NTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
             +KK   VN+    YV   L RVSQ+  +N M A +L++   P +M     +P+F
Sbjct: 135 EIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLM-----RPDF 185

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 49  TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 108
           ++ FG+P++  V  +   KP+P  + KC +++  +GL ++ L++  G+K    ++   ++
Sbjct: 10  SNYFGMPLQDLVTAE---KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFD 66
Query: 109 QDPN---ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMR 159
           QD N    S+   VN   VA   K + A LP+PL  + L+ E+  A         +HA++
Sbjct: 67  QDHNINLVSMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK 124
Query: 160 NTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
             +KK   VN+    YV   L RVSQ+  +N M A +L++   P +M     +P+F
Sbjct: 125 EIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLM-----RPDF 175

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 44  KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 103
           K    ++ FGVP+   V  +   KP+P  + +C +Y+  +GL+++ +++  G+K  ++ L
Sbjct: 46  KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESL 102
Query: 104 VSMYNQDPNASLPE---GVNPFDVAALAKYYLASLPEPLTTFELY------DEIKGARSS 154
              ++QD N  L E    VN   VA   K + + LP+PL  + +        +I      
Sbjct: 103 QRQFDQDHNLDLAEKDFTVN--TVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQK 160
Query: 155 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
           +HA++  LKK    N    +YV + L +VS  + +N M + +L++   P +M     +P+
Sbjct: 161 LHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLM-----RPD 215
Query: 215 F 215
           F
Sbjct: 216 F 216

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGV ++   ++    +P+P +L +   YL    L ++ +F+   + +V++ +   YN   
Sbjct: 9   FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 65
Query: 112 NASLPEGVNPFDV----AALAKYYLASLPEPLTTFELYDEIKG-----ARSSIHAMRNTL 162
              LP   + ++     A + K +L  LPEPL TF+LY  + G         + A    L
Sbjct: 66  -MGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 124
Query: 163 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
           + L   N+  L ++TA L+++S  S  NKM   +LA+   P ++W K+
Sbjct: 125 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 172

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGV ++   ++    +P+P +L +   YL    L ++ +F+   + +V++ +   YN   
Sbjct: 45  FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 101
Query: 112 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKG-----ARSSIHAMRNTL 162
              LP   + ++     A + K +L  LPEPL TF+LY  + G         + A    L
Sbjct: 102 -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 160
Query: 163 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
           + L   N+  L ++TA L+++S  S  NKM   +LA+   P ++W K+
Sbjct: 161 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 208

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGV ++   ++    +P+P +L +   YL    L ++ +F+   + +V++ +   YN   
Sbjct: 6   FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 62
Query: 112 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKG-----ARSSIHAMRNTL 162
              LP   + ++     A + K +L  LPEPL TF+LY  + G         + A    L
Sbjct: 63  -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 121
Query: 163 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
           + L   N+  L ++TA L+++S  S  NKM   +LA+   P ++W K+
Sbjct: 122 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 169

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGV ++   ++    +P+P +L +   YL    L ++ +F+   + +V++ +   YN   
Sbjct: 10  FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 66
Query: 112 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKG-----ARSSIHAMRNTL 162
              LP   + ++     A + K +L  LPEPL TF+LY  + G         + A    L
Sbjct: 67  -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 125
Query: 163 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
           + L   N+  L ++TA L+++S  S  NKM   +LA+   P ++W K+
Sbjct: 126 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 173

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 111
           FGV ++   ++    +P+P +L +   YL    L ++ +F    + +V++ +   YN   
Sbjct: 37  FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYN--- 93
Query: 112 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKG-----ARSSIHAMRNTL 162
              LP   + ++     A + K +L  LPEPL TF+LY  + G         + A    L
Sbjct: 94  -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 152
Query: 163 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
           + L   N+  L ++TA L+++S  S  NKM   +LA+   P ++W K+
Sbjct: 153 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 200

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           VFGVP+ V VQR   G+P+P  + +   YL    L+   LF+  G K  IQ L  M    
Sbjct: 20  VFGVPLTVNVQRT--GQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGA 77
Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTT-------FELYDEI-KGARSSIHAMRNTL 162
            +    EG + +DVA + K Y   LPEPL T        ++Y  + K  R  + A++  +
Sbjct: 78  IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQR--LQAIKAAI 135
Query: 163 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 205
             L + N   L+ +   L  V+     N+M   +LA+ +AP +
Sbjct: 136 MLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSL 178

>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 69  VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFD-VAAL 127
           +P I+V C + +   GL    L++  G  + ++ L   + +     L   V+    + +L
Sbjct: 17  IPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSL 76
Query: 128 AKYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 181
            K +L +L EPL TF L        EI    +SI AM   + +L   N  TL ++   L 
Sbjct: 77  LKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQ 136
Query: 182 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
           RV+Q S   KMD  +LA    P I+      P+
Sbjct: 137 RVAQ-SPHTKMDVANLAKVFGPTIVAHAVPNPD 168

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 43  QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQH 102
           +KG+    +FG  +    +R+     VP  + +C + +   GL+   +++  G+   IQ 
Sbjct: 11  EKGLIKDQIFGSHLHKVCERE--NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQK 68
Query: 103 LVSMYNQDPNASLPEGV--NPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSS 154
           L  + NQ+   +L +    +   V    K +   LPEPL  +  +++   A       + 
Sbjct: 69  LRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTR 128
Query: 155 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 206
           I A+++ ++KL   N  T++ +   L ++  K+  N M  +SL +   P ++
Sbjct: 129 IEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLL 180

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 70  PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDV 124
           P ++  C   +   GLNS+ L++  G   +I+ +   +++D      + ++ E +N   +
Sbjct: 286 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINI--I 343
Query: 125 AALAKYYLASLPEPLTTFELYDE-IKGAR-----SSIHAMRNTLKKLSNVNFMTLEYVTA 178
               K Y   LP PL T++ Y + I+ A+       +  +   LK L   +  TL Y+ A
Sbjct: 344 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMA 403
Query: 179 LLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
            L RV+     N M+A +L +   P +M    R PE 
Sbjct: 404 HLKRVTLHEKENLMNAENLGIVFGPTLM----RSPEL 436

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 66  GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL---PEGVNPF 122
           G  VP +L  C  ++   G+    +++  G    IQ L   ++ +    L   P   +  
Sbjct: 34  GFEVPQVLQSCTAFIERYGIVDG-IYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIH 92
Query: 123 DVAALAKYYLASLPEPLTTFELYDEIKGARSS------IHAMRNTLKKLSNVNFMTLEYV 176
            V +L K Y   LP PL T++LY++   A S+      +  + + +++L   ++ TLE++
Sbjct: 93  SVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFL 152
Query: 177 TALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
              L  ++    +  M A++LA+  AP ++  K+
Sbjct: 153 MRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQ 186

>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 70  PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDV 124
           P ++  C   +   GLNS+ L++  G   +I+ +   +++D      + ++ E +N   +
Sbjct: 25  PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINI--I 82
Query: 125 AALAKYYLASLPEPLTTFELYDE-IKGAR-----SSIHAMRNTLKKLSNVNFMTLEYVTA 178
               K Y   LP PL T++ Y + I+ A+       +  +   LK L   +  TL Y+ A
Sbjct: 83  TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMA 142
Query: 179 LLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
            L RV+     N M+A +L +   P +M    R PE 
Sbjct: 143 HLKRVTLHEKENLMNAENLGIVFGPTLM----RSPEL 175

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 17/192 (8%)
Query: 31  KSKTILTDIERWQKGVASTDV----FGVPIEVTVQRQ--QYGKPVPHILVKCADYLVLSG 84
           K K +    +R +   A+T++    FGVP          +YG  +P  LV     L    
Sbjct: 40  KVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGH-IPSFLVDACTSLE-DH 97
Query: 85  LNSQFLFKAEGDKKVIQHLVSMYNQ-DPNASLPEGVNPFDVAALAKYYLASLPEPLTTFE 143
           ++++ LF+  G    +  L ++ N+ D          P D+A L K +   LPEP+   +
Sbjct: 98  IHTEGLFRKSGS---VIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPAD 154
Query: 144 LYDEIKGARSSIHAMRNTLK-----KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 198
           L++ +  A+      +N         L++     L Y    L  VS +S  NKMD+ +LA
Sbjct: 155 LHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLA 214
Query: 199 MEMAPVIMWQKE 210
           +  AP ++   E
Sbjct: 215 VIFAPNLLQTSE 226

>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 12/181 (6%)
Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           +FG+ +    +     KPV  +L     +L   G  ++ +F+   + K  + L    N  
Sbjct: 12  LFGISLPNICENDNLPKPVLDMLF----FLNQKGPLTKGIFRQSANVKSCRELKEKLNSG 67
Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKK 164
               L +  + F +A++ K +L ++P  + + +LYD      +       I+ ++  L +
Sbjct: 68  VEVHL-DCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQ 126
Query: 165 LSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMW-QKERKPEFYRQYWNHA 223
           L   N + L Y+  +L  + Q S  N+M A +LA+ +AP I+W      PE   ++    
Sbjct: 127 LPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEFTKKV 186
Query: 224 S 224
           S
Sbjct: 187 S 187

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 70  PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD-PNASLPEGVNPFDVAALA 128
           P ++  C   +   GL S+ L++  G  + I+ +   +++D   A +   V P D+  + 
Sbjct: 289 PMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYP-DINIIT 347
Query: 129 ---KYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKLSNVNFMTLEYVTAL 179
              K Y   LP P+ T++ Y       +I  A   + A+   L  L   ++ TL Y+   
Sbjct: 348 GALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIH 407
Query: 180 LLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
           L +V+     N M+A +L +   P +M    R PE
Sbjct: 408 LKKVTMNEKDNFMNAENLGIVFGPTLM----RPPE 438

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	2e-38
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	1e-37
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	1e-37
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	2e-34
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	8e-34
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	2e-33
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	1e-32
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	3e-32
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	2e-31
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	3e-31
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	2e-29
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	3e-29
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	3e-29
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	2e-28
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	5e-26
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	2e-23

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  133 bits (336), Expect = 2e-38
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
            FGV ++   ++    +P+P +L +   YL    L ++ +F+   + +V++ +   YN  
Sbjct: 8   QFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG 67

Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSS-----IHAMRNTLKKL 165
                 +       A + K +L  LPEPL TF+LY  + G  +      + A    L+ L
Sbjct: 68  LPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTL 127

Query: 166 SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
              N+  L ++TA L+++S  S  NKM   +LA+   P ++W K+
Sbjct: 128 PEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 172

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  132 bits (334), Expect = 1e-37
 Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 14/201 (6%)

Query: 43  QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQH 102
           +       VFGVP+ V VQR   G+P+P  + +   YL    L+   LF+  G K  IQ 
Sbjct: 12  ENLYFQGSVFGVPLTVNVQR--TGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQA 69

Query: 103 LVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSIH 156
           L  M     +    EG + +DVA + K Y   LPEPL T +L +              + 
Sbjct: 70  LRQMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQ 129

Query: 157 AMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFY 216
           A++  +  L + N   L+ +   L  V+     N+M   +LA+ +AP +      K E  
Sbjct: 130 AIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRE-- 187

Query: 217 RQYWNHASRSSSKNMEPATPH 237
               N + R   +      P 
Sbjct: 188 ----NSSPRVMQRKQSLGKPD 204

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  132 bits (334), Expect = 1e-37
 Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 6/198 (3%)

Query: 18  KIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCA 77
           ++   +   K+ QKS           +       FGV ++   ++    +P+P +L +  
Sbjct: 12  QVLKYDDFLKSTQKSPATAPKPMP-PRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETV 70

Query: 78  DYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPE 137
            YL    L ++ +F+   + +V++ +   YN        +       A + K +L  LPE
Sbjct: 71  AYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPE 130

Query: 138 PLTTFELYDEIKGARSS-----IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKM 192
           PL TF+LY  + G  +      + A    L+ L   N+  L ++TA L+++S  S  NKM
Sbjct: 131 PLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKM 190

Query: 193 DARSLAMEMAPVIMWQKE 210
              +LA+   P ++W K+
Sbjct: 191 TNTNLAVVFGPNLLWAKD 208

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  124 bits (313), Expect = 2e-34
 Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 10/175 (5%)

Query: 43  QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQH 102
            K    ++ FGVP+   V      KP+P  + +C +Y+  +GL+++ +++  G+K  ++ 
Sbjct: 45  TKATWESNYFGVPLTTVVTP---EKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMES 101

Query: 103 LVSMYNQDPNASLPEG-VNPFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSI 155
           L   ++QD N  L E       VA   K + + LP+PL  + +  +      I      +
Sbjct: 102 LQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKL 161

Query: 156 HAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
           HA++  LKK    N    +YV + L +VS  + +N M + +L++   P +M    
Sbjct: 162 HALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDF 216

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  121 bits (306), Expect = 8e-34
 Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 43  QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQH 102
           +KG+    +FG  +    +R+     VP  + +C + +   GL+   +++  G+   IQ 
Sbjct: 11  EKGLIKDQIFGSHLHKVCERE--NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQK 68

Query: 103 LVSMYNQDPNASL--PEGVNPFDVAALAKYYLASLPEPLTTFELYDE-IKGARSS----- 154
           L  + NQ+   +L   +  +   V    K +   LPEPL  +  +++ ++  +       
Sbjct: 69  LRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTR 128

Query: 155 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
           I A+++ ++KL   N  T++ +   L ++  K+  N M  +SL +   P ++  + 
Sbjct: 129 IEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAEN 184

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  120 bits (304), Expect = 2e-33
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 10/167 (5%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
            FG+P++         KP+P  + KC +++  +GL ++ L++  G+K    ++   ++QD
Sbjct: 12  YFGMPLQ---DLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQD 68

Query: 111 PNASLPEG-VNPFDVAALAKYYLASLPEPLTTFELYDE-IKGARSS-----IHAMRNTLK 163
            N +L    V    VA   K + A LP+PL  + L+ E ++ A+       +HA++  +K
Sbjct: 69  HNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVK 128

Query: 164 KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
           K   VN+    YV   L RVSQ+  +N M A +L++   P +M    
Sbjct: 129 KFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDF 175

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  118 bits (297), Expect = 1e-32
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 11/172 (6%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           V+   +   V+        P ++  C   +   GLNS+ L++  G   +I+ +   +++D
Sbjct: 8   VYSCDLTTLVKAH--TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRD 65

Query: 111 PNASLPEGVNPFDVAALA---KYYLASLPEPLTTFELYDE------IKGARSSIHAMRNT 161
              +        D+  +    K Y   LP PL T++ Y +      I      +  +   
Sbjct: 66  GEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEA 125

Query: 162 LKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP 213
           LK L   +  TL Y+ A L RV+     N M+A +L +   P +M   E   
Sbjct: 126 LKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDA 177

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  116 bits (294), Expect = 3e-32
 Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 11/166 (6%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           +FG+ +    +       +P  ++    +L   G  ++ +F+   + K  + L    N  
Sbjct: 12  LFGISLPNICENDN----LPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSG 67

Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE-IKGARSS-----IHAMRNTLKK 164
               L +  + F +A++ K +L ++P  + + +LYD  +           I+ ++  L +
Sbjct: 68  VEVHL-DCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQ 126

Query: 165 LSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
           L   N + L Y+  +L  + Q S  N+M A +LA+ +AP I+W   
Sbjct: 127 LPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPA 172

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  115 bits (291), Expect = 2e-31
 Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 38  DIERWQKGVASTD-VFGVPIEVTVQRQQYGKP-VPHILVKCADYLVLSGLNSQFLFKAEG 95
           D   W + +   + V+    +   +           I+ KC   +   G+N Q L++  G
Sbjct: 4   DRRLWMEAMDGREPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVG 63

Query: 96  DKKVIQHLVSMYNQDPNASLPEGVNPFD-----VAALAKYYLASLPEPLTTFELYDE-IK 149
               +Q L+S+      A+  E     +     + +  K YL  LP PL  ++     IK
Sbjct: 64  VNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIK 123

Query: 150 GARSS-----IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 204
            A+       +  + + + +L   N   L  +   L +V+     N M   +L +   P 
Sbjct: 124 AAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPT 183

Query: 205 IMWQKE 210
           ++  +E
Sbjct: 184 LLRPQE 189

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  116 bits (293), Expect = 3e-31
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 9/171 (5%)

Query: 51  VFGVPIEVTVQRQQYGKP-VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQ 109
           +FGVP              +P  LV     L    ++++ LF+  G    ++ L +  + 
Sbjct: 64  IFGVPFNALPHSAVPEYGHIPSFLVDACTSL-EDHIHTEGLFRKSGSVIRLKALKNKVDH 122

Query: 110 DPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE-IKGARSS----IHAMRNTLKK 164
                      P D+A L K +   LPEP+   +L++  +K  +        A       
Sbjct: 123 GE--GCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCL 180

Query: 165 LSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
           L++     L Y    L  VS +S  NKMD+ +LA+  AP ++   E   + 
Sbjct: 181 LADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKM 231

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  110 bits (277), Expect = 2e-29
 Identities = 36/172 (20%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           VFG  +   +     G  VP +L  C  ++   G+    +++  G    IQ L   ++ +
Sbjct: 21  VFGCDLGEHLLNS--GFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSE 77

Query: 111 PNASLPEGVNPFDVAALA---KYYLASLPEPLTTFELYDE-IKGARSS-----IHAMRNT 161
               L +     D+ ++    K Y   LP PL T++LY++      ++     +  + + 
Sbjct: 78  HVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDV 137

Query: 162 LKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP 213
           +++L   ++ TLE++   L  ++    +  M A++LA+  AP ++  K+ + 
Sbjct: 138 IQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 189

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  114 bits (287), Expect = 3e-29
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 11/172 (6%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           V+   +   V+        P ++  C   +   GLNS+ L++  G   +I+ +   +++D
Sbjct: 269 VYSCDLTTLVKAH--TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRD 326

Query: 111 PNASLPEGVNPFDVAALA---KYYLASLPEPLTTFELYDE------IKGARSSIHAMRNT 161
              +        D+  +    K Y   LP PL T++ Y +      I      +  +   
Sbjct: 327 GEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEA 386

Query: 162 LKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP 213
           LK L   +  TL Y+ A L RV+     N M+A +L +   P +M   E   
Sbjct: 387 LKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDA 438

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score =  113 bits (283), Expect = 3e-29
 Identities = 30/160 (18%), Positives = 65/160 (40%), Gaps = 4/160 (2%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           +  VP++     +     VP  +    D+L     + + LF+  G ++ +Q ++   +  
Sbjct: 183 LQMVPLDEGASER--PLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTS 240

Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNF 170
              ++P   +   VA     +L +LPEP+  +ELY     +       R  + +L   + 
Sbjct: 241 IPETIPG--SNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHR 298

Query: 171 MTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
               Y+ A L  + + S  N ++A  +A     +++    
Sbjct: 299 NVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score =  107 bits (270), Expect = 2e-28
 Identities = 31/173 (17%), Positives = 73/173 (42%), Gaps = 10/173 (5%)

Query: 47  ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSM 106
           A  +   + +    ++       P +L+K  + +   GL    L++ +    +   L  +
Sbjct: 3   ADVEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQL 61

Query: 107 YNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE-------IKGARSSIHAMR 159
            + D  +   E ++   +A   K YL  LP P+    +Y E       ++ +   I  ++
Sbjct: 62  LDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLK 121

Query: 160 NTLK--KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
             ++   + +  ++TL+Y+     ++SQ S  N ++AR L+   +P++     
Sbjct: 122 KLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSA 174

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  100 bits (252), Expect = 5e-26
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 66  GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPF-DV 124
              +P I+V C + +   GL    L++  G  + ++ L   + +     L   V+    +
Sbjct: 14  SPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAI 73

Query: 125 AALAKYYLASLPEPLTTFELYDE------IKGARSSIHAMRNTLKKLSNVNFMTLEYVTA 178
            +L K +L +L EPL TF L         I    +SI AM   + +L   N  TL ++  
Sbjct: 74  CSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMI 133

Query: 179 LLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 215
            L RV+Q     KMD  +LA    P I+      P+ 
Sbjct: 134 HLQRVAQSP-HTKMDVANLAKVFGPTIVAHAVPNPDP 169

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score = 94.5 bits (235), Expect = 2e-23
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 14/167 (8%)

Query: 52  FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDK-KVIQHLVSMYNQD 110
            G+ +    ++       P +LVK  + +  +GL+S+  ++ E    +    L  +   D
Sbjct: 23  MGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPAPRTDWSLSDVDQWD 82

Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA---RSSIHAMRNTLKKLSN 167
             A          +A   K +L +LP PL T E   E + A    +           L  
Sbjct: 83  TAA----------LADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPL 132

Query: 168 VNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
              +TL ++   L RV++++       R+L     P+++        
Sbjct: 133 HRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSS 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	100.0
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	100.0
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	100.0
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	100.0
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	100.0
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	100.0
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	100.0
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	100.0
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	100.0
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	100.0
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	100.0
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	100.0
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	100.0
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	100.0
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	100.0
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	100.0

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.6e-45  Score=317.91  Aligned_cols=169  Identities=22%  Similarity=0.419  Sum_probs=155.7

Q ss_pred             hcCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCC--CCc
Q 022764           43 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE--GVN  120 (292)
Q Consensus        43 ~~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~--~~d  120 (292)
                      .++..+.++||++|+++++++  +..||.++.+|+++|+++|+++|||||++|+..++++|++.+|++...++..  ..|
T Consensus        11 ~~~~~~~~vFG~~L~~~~~~~--~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~d   88 (214)
T 3byi_A           11 EKGLIKDQIFGSHLHKVCERE--NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWED   88 (214)
T ss_dssp             HHTSCCCCSTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCS
T ss_pred             hcCCCcCCccCCcHHHHHHHc--CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccc
Confidence            367778999999999999876  5699999999999999999999999999999999999999999987666533  259


Q ss_pred             hhhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCCh
Q 022764          121 PFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDA  194 (292)
Q Consensus       121 ~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~  194 (292)
                      +|++|++||.|||+||+||+|.++|+.|+++      ..+++.++.++.+||+.|+.+|+||+.||++|+.|++.|+|++
T Consensus        89 vh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~  168 (214)
T 3byi_A           89 IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMST  168 (214)
T ss_dssp             HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCH
Confidence            9999999999999999999999999999876      3578999999999999999999999999999999999999999


Q ss_pred             hhhhHhhccccccCCCCCh
Q 022764          195 RSLAMEMAPVIMWQKERKP  213 (292)
Q Consensus       195 ~nLa~vf~P~Ll~~~~~~~  213 (292)
                      .|||+||||+|+|++..+.
T Consensus       169 ~NLa~vf~P~Ll~~~~~~~  187 (214)
T 3byi_A          169 QSLGIVFGPTLLRAENETG  187 (214)
T ss_dssp             HHHHHHHHHHHHCCTTSSS
T ss_pred             HHhHHHhccccCCCCCccH
Confidence            9999999999999987653

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=100.00  E-value=5.6e-45  Score=313.10  Aligned_cols=166  Identities=27%  Similarity=0.476  Sum_probs=153.2

Q ss_pred             CCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhH
Q 022764           46 VASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVA  125 (292)
Q Consensus        46 ~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va  125 (292)
                      ..+.++||++|++++++.+....||.++.+|+++|+++|+++|||||++|+..+++++++.+|+|...++....|+|++|
T Consensus         3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~a   82 (198)
T 1tx4_A            3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA   82 (198)
T ss_dssp             CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred             CCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHHH
Confidence            45678999999999988654469999999999999999999999999999999999999999998877654346899999


Q ss_pred             HHHHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764          126 ALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME  200 (292)
Q Consensus       126 ~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v  200 (292)
                      ++||.|||+||+||+|.++|+.|+++     .++++.++.++.+||+.|+.+|+||+.||++|+.|++.|+|+++|||+|
T Consensus        83 ~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v  162 (198)
T 1tx4_A           83 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVV  162 (198)
T ss_dssp             HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhh
Confidence            99999999999999999999999886     3578999999999999999999999999999999999999999999999


Q ss_pred             hccccccCCCC
Q 022764          201 MAPVIMWQKER  211 (292)
Q Consensus       201 f~P~Ll~~~~~  211 (292)
                      |||+|+|+++.
T Consensus       163 f~P~Ll~~~~~  173 (198)
T 1tx4_A          163 FGPNLLWAKDA  173 (198)
T ss_dssp             HHHHHCCCSSH
T ss_pred             hcccccCCCCc
Confidence            99999999753

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-44  Score=311.93  Aligned_cols=166  Identities=23%  Similarity=0.364  Sum_probs=150.2

Q ss_pred             CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCC-CCCCC--CCCchhhh
Q 022764           48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-NASLP--EGVNPFDV  124 (292)
Q Consensus        48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~-~~~~~--~~~d~~~v  124 (292)
                      ..++||++|++++++.  +..+|.++.+|+++|+++|+++|||||++|+..+++.|++.+|+++ ..++.  ...|+|++
T Consensus         5 ~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~v   82 (202)
T 2osa_A            5 VKKVYSCDLTTLVKAH--TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINII   82 (202)
T ss_dssp             --CCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHH
T ss_pred             CCCccCCChHHHHHHc--CCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHH
Confidence            3689999999999886  4589999999999999999999999999999999999999999853 33432  23699999


Q ss_pred             HHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhh
Q 022764          125 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA  198 (292)
Q Consensus       125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa  198 (292)
                      |++||.|||+||+||+|.++|+.|+++      .++++.++.++.+||++|+.+|.||+.||++|+.|++.|+||+.|||
T Consensus        83 a~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa  162 (202)
T 2osa_A           83 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLG  162 (202)
T ss_dssp             HHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence            999999999999999999999999886      35789999999999999999999999999999999999999999999


Q ss_pred             HhhccccccCCCCChHH
Q 022764          199 MEMAPVIMWQKERKPEF  215 (292)
Q Consensus       199 ~vf~P~Ll~~~~~~~~~  215 (292)
                      +||||+|+++++.+...
T Consensus       163 ~vf~P~Ll~~~~~~~~~  179 (202)
T 2osa_A          163 IVFGPTLMRSPELDAMA  179 (202)
T ss_dssp             HHHHHHHCCCCCCCHHH
T ss_pred             HHHccccCCCCCccHHH
Confidence            99999999999877543

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=317.31  Aligned_cols=205  Identities=20%  Similarity=0.402  Sum_probs=162.6

Q ss_pred             CCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCC---Cch
Q 022764           45 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG---VNP  121 (292)
Q Consensus        45 ~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~---~d~  121 (292)
                      +..+.++||++|++++++.  +..||.+|.+|+++|+++|+ +|||||++|+..++++|++.++.+...++...   .|+
T Consensus        15 ~~~~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dv   91 (229)
T 3iug_A           15 YFQGERVFGCDLGEHLLNS--GFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDI   91 (229)
T ss_dssp             ---CCCSTTSCHHHHHHHH--CCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCH
T ss_pred             CCCCCCeECcchHHHHHhc--CCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccch
Confidence            4457899999999999886  55899999999999999999 89999999999999999999999876654332   599


Q ss_pred             hhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChh
Q 022764          122 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDAR  195 (292)
Q Consensus       122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~  195 (292)
                      |++|++||.|||+||+||+|.++|+.|+++      .+++..++.++.+||+.|+.+|+||+.||++|+.+++.|+|++.
T Consensus        92 h~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~  171 (229)
T 3iug_A           92 HSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK  171 (229)
T ss_dssp             HHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChH
Confidence            999999999999999999999999999887      46788999999999999999999999999999999999999999


Q ss_pred             hhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHH
Q 022764          196 SLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCL  275 (292)
Q Consensus       196 nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~l  275 (292)
                      |||+||||+|+|++..+.......                                       ...++...+. .++++|
T Consensus       172 NLAivf~P~Ll~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~-~vve~L  211 (229)
T 3iug_A          172 NLAIVWAPNLLRSKQIESACFSGT---------------------------------------AAFMEVRIQS-VVVEFI  211 (229)
T ss_dssp             HHHHHHHHHHCCC----------------------------------------------------------CH-HHHHHH
T ss_pred             HHHHHHhccccCCCcccccccchH---------------------------------------HHHHHHHHHH-HHHHHH
Confidence            999999999999986542211100                                       0011122233 499999


Q ss_pred             HhhhhccccccCccccC
Q 022764          276 MEQHNAIFTDANETVWR  292 (292)
Q Consensus       276 Ie~~~~iF~~~~~~~~~  292 (292)
                      |+||+.||+++.+++++
T Consensus       212 I~~~~~iF~~~~~~~~~  228 (229)
T 3iug_A          212 LNHVDVLFSGRISMAMQ  228 (229)
T ss_dssp             HHTHHHHTC--------
T ss_pred             HHhHHHhCCCcHHhhcc
Confidence            99999999998887753

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=309.11  Aligned_cols=162  Identities=22%  Similarity=0.389  Sum_probs=150.3

Q ss_pred             CCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHH
Q 022764           47 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA  126 (292)
Q Consensus        47 ~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~  126 (292)
                      ...++||++|+++++++    .||.++.+|+++|+++|+++|||||++|+..+++++++.++.|...++ +..|+|++|+
T Consensus         8 ~~~~vFG~~L~~~~~~~----~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~-~~~d~~~va~   82 (201)
T 3msx_B            8 MPGQLFGISLPNICEND----NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHL-DCESIFVIAS   82 (201)
T ss_dssp             --CCCTTSCHHHHSGGG----CCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCT-TSSCHHHHHH
T ss_pred             CCCCeeCCcHHHHhcCC----CCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCC-CcccHHHHHH
Confidence            35789999999998753    699999999999999999999999999999999999999999987665 5689999999


Q ss_pred             HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764          127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME  200 (292)
Q Consensus       127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v  200 (292)
                      +||.|||+||+||+|.++|+.|+++      .++++.++.++.+||+.|+.+|+||+.||++|+.|++.|+||++|||+|
T Consensus        83 lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v  162 (201)
T 3msx_B           83 VLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVC  162 (201)
T ss_dssp             HHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhh
Confidence            9999999999999999999999876      4578999999999999999999999999999999999999999999999


Q ss_pred             hccccccCCCCCh
Q 022764          201 MAPVIMWQKERKP  213 (292)
Q Consensus       201 f~P~Ll~~~~~~~  213 (292)
                      |||+|+|++....
T Consensus       163 f~P~ll~~~~~~~  175 (201)
T 3msx_B          163 VAPSILWPPASSS  175 (201)
T ss_dssp             HHHHHCCCCTTSC
T ss_pred             hhccccCCCCCCC
Confidence            9999999987654

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=100.00  E-value=1.8e-44  Score=312.48  Aligned_cols=166  Identities=30%  Similarity=0.497  Sum_probs=151.8

Q ss_pred             cCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCC-CCchh
Q 022764           44 KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPF  122 (292)
Q Consensus        44 ~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~  122 (292)
                      ++....++||++|++++.+   +..||.++.+|+++|+++|+++|||||++|+..+++.|++.++++...++.. +.|+|
T Consensus         5 ~~~~~~~~FG~~L~~~~~~---~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~   81 (209)
T 2ee4_A            5 SSGWESNYFGMPLQDLVTA---EKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVN   81 (209)
T ss_dssp             SSSSCCSSSSSCHHHHSCS---SCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHH
T ss_pred             CCCCCCCeeCCcHHHHHhc---CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHH
Confidence            3456788999999999875   4589999999999999999999999999999999999999999987665422 47999


Q ss_pred             hhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764          123 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS  196 (292)
Q Consensus       123 ~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n  196 (292)
                      ++|++||.|||+||+||+|.++|+.|+++      .++++.++.++.+||+.|+.+|+||+.||++|+.+++.|+|++.|
T Consensus        82 ~va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~N  161 (209)
T 2ee4_A           82 AVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADN  161 (209)
T ss_dssp             HHHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred             HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence            99999999999999999999999999876      457899999999999999999999999999999999999999999


Q ss_pred             hhHhhccccccCCCCC
Q 022764          197 LAMEMAPVIMWQKERK  212 (292)
Q Consensus       197 La~vf~P~Ll~~~~~~  212 (292)
                      ||+||||+|+|++..+
T Consensus       162 Laivf~P~L~~~~~~~  177 (209)
T 2ee4_A          162 LSICFWPTLMRPDFEN  177 (209)
T ss_dssp             HHHHHHHHHSCCCCCS
T ss_pred             HHHHhcccccCCCCcc
Confidence            9999999999987544

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=100.00  E-value=3.9e-44  Score=316.86  Aligned_cols=167  Identities=26%  Similarity=0.473  Sum_probs=153.8

Q ss_pred             CCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhh
Q 022764           45 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV  124 (292)
Q Consensus        45 ~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~v  124 (292)
                      +..+.++||++|++++.+.+.+..||.++.+|+++|+++|+++|||||++|+..++++|++.+|+|...++....|+|++
T Consensus        38 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~v  117 (242)
T 1ow3_A           38 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLP  117 (242)
T ss_dssp             -CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred             CCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHH
Confidence            45678899999999998865556999999999999999999999999999999999999999999987765333599999


Q ss_pred             HHHHHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764          125 AALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM  199 (292)
Q Consensus       125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~  199 (292)
                      |++||.|||+||+||+|.++|+.|+++     .++++.++.++.+||+.|+.+|+||+.||++|++|++.|+||++|||+
T Consensus       118 a~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi  197 (242)
T 1ow3_A          118 AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV  197 (242)
T ss_dssp             HHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHH
Confidence            999999999999999999999999886     357899999999999999999999999999999999999999999999


Q ss_pred             hhccccccCCCC
Q 022764          200 EMAPVIMWQKER  211 (292)
Q Consensus       200 vf~P~Ll~~~~~  211 (292)
                      ||||+|+++++.
T Consensus       198 vf~P~Ll~~~~~  209 (242)
T 1ow3_A          198 VFGPNLLWAKDA  209 (242)
T ss_dssp             HHHHHHCCCSSH
T ss_pred             hhcchhCCCCCc
Confidence            999999998753

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.3e-44  Score=316.75  Aligned_cols=168  Identities=27%  Similarity=0.512  Sum_probs=151.9

Q ss_pred             hcCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCC-CCch
Q 022764           43 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNP  121 (292)
Q Consensus        43 ~~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~  121 (292)
                      .+...+.++||+||++++..   +..||.+|.+|+++|+++|+++|||||++|+..+++.|++.+|.+...++.. ++|+
T Consensus        45 ~~~~~~~~vFGv~L~~~~~~---~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dv  121 (246)
T 3fk2_A           45 TKATWESNYFGVPLTTVVTP---EKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTV  121 (246)
T ss_dssp             ----CCCSSTTSCGGGGCCS---SSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCH
T ss_pred             cccccCCCeeCCCHHHHhcC---CCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcH
Confidence            34556789999999999864   4689999999999999999999999999999999999999999988766533 4799


Q ss_pred             hhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChh
Q 022764          122 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDAR  195 (292)
Q Consensus       122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~  195 (292)
                      |+||++||.|||+||+||+|.++|+.|+++      ..++..++.++.+||+.|+.+|.||+.||++|+.+++.|+||+.
T Consensus       122 h~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~  201 (246)
T 3fk2_A          122 NTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSE  201 (246)
T ss_dssp             HHHHHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchH
Confidence            999999999999999999999999999987      35789999999999999999999999999999999999999999


Q ss_pred             hhhHhhccccccCCCCCh
Q 022764          196 SLAMEMAPVIMWQKERKP  213 (292)
Q Consensus       196 nLa~vf~P~Ll~~~~~~~  213 (292)
                      |||+||||+|+|++..+.
T Consensus       202 NLAivf~P~Llrp~~~~~  219 (246)
T 3fk2_A          202 NLSICFWPTLMRPDFSTM  219 (246)
T ss_dssp             HHHHHHHHHHHCCCSSSS
T ss_pred             HhHHHhcccccCCCCccH
Confidence            999999999999876554

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=100.00  E-value=2.7e-44  Score=312.80  Aligned_cols=165  Identities=19%  Similarity=0.348  Sum_probs=145.6

Q ss_pred             CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC-CCCCCCCchhhhHH
Q 022764           48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLPEGVNPFDVAA  126 (292)
Q Consensus        48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~~~~d~~~va~  126 (292)
                      ...+||++|++++++...+..||.+|.+|+++|+++|+++|||||++|+..+ ++|++.++++.. .++ +.+|+|+||+
T Consensus         4 d~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~-~~~dv~~va~   81 (216)
T 1pbw_A            4 DVEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDL-EMIDVHVLAD   81 (216)
T ss_dssp             --------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCG-GGBCHHHHHH
T ss_pred             ccccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCc-cccCHHHHHH
Confidence            3569999999999876667899999999999999999999999999999999 999999998753 343 5689999999


Q ss_pred             HHHHHHhhCCCCCCchhhhHHHHhHH-------HHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHHhcccccCCChhhh
Q 022764          127 LAKYYLASLPEPLTTFELYDEIKGAR-------SSIHAMRNTLK--KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL  197 (292)
Q Consensus       127 lLK~fLr~Lp~PLi~~~~~~~~~~~~-------~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nL  197 (292)
                      +||.|||+||+||+|.++|+.|+++.       ++++.++.++.  +||+.|+.+|+||+.||++|+.|++.|+|+++||
T Consensus        82 lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL  161 (216)
T 1pbw_A           82 AFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVL  161 (216)
T ss_dssp             HHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence            99999999999999999999998873       57889999999  9999999999999999999999999999999999


Q ss_pred             hHhhccccccCCCCChH
Q 022764          198 AMEMAPVIMWQKERKPE  214 (292)
Q Consensus       198 a~vf~P~Ll~~~~~~~~  214 (292)
                      |+||||+|+|++..+..
T Consensus       162 Aivf~P~Ll~~~~~~~~  178 (216)
T 1pbw_A          162 SEIFSPMLFRFSAASSD  178 (216)
T ss_dssp             HHHHHHHHHTCSSCCHH
T ss_pred             HHHHhhhcCCCCCCchh
Confidence            99999999999987753

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=100.00  E-value=3.2e-43  Score=308.99  Aligned_cols=204  Identities=21%  Similarity=0.318  Sum_probs=148.7

Q ss_pred             HHHhcCCC-CCCccCCCHHHHHhhhcC-CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHH-HHccCC--CCC
Q 022764           40 ERWQKGVA-STDVFGVPIEVTVQRQQY-GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVS-MYNQDP--NAS  114 (292)
Q Consensus        40 ~~~~~~~~-~~~vFG~~L~~l~~~~~~-~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~-~~~~~~--~~~  114 (292)
                      +.|..... ..++||+||...++++.. +..+|.+|.+|+++|+++|+++|||||++|+..+++++++ .+|.+.  ..+
T Consensus         6 ~~W~~~m~~~~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~   85 (231)
T 1f7c_A            6 RLWMEAMDGREPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETE   85 (231)
T ss_dssp             -------------------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------C
T ss_pred             HHHHHHcCCCCCccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccC
Confidence            34444332 467999999998766432 3467999999999999999999999999999999999986 577763  333


Q ss_pred             CC--CCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhc
Q 022764          115 LP--EGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQK  186 (292)
Q Consensus       115 ~~--~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~  186 (292)
                      +.  ...|+|+||++||.|||+||+||+|.++|+.|+++      ..++..++.++.+||+.|+.+|+||+.||++|+.|
T Consensus        86 l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~  165 (231)
T 1f7c_A           86 TEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADN  165 (231)
T ss_dssp             CCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence            32  24799999999999999999999999999999886      45789999999999999999999999999999999


Q ss_pred             ccccCCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCC
Q 022764          187 SLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDF  266 (292)
Q Consensus       187 ~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~  266 (292)
                      ++.|+|++.|||+||||+|++++..+.....                                             +...
T Consensus       166 s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~---------------------------------------------~~~~  200 (231)
T 1f7c_A          166 HKQNLMTVANLGVVFGPTLLRPQEETVAAIM---------------------------------------------DIKF  200 (231)
T ss_dssp             HHHHCCCHHHHHHHHHHHHSCC---CCSGGG---------------------------------------------GHHH
T ss_pred             CCCCCCCHHHHHHHhccccCCCCcccHHHHH---------------------------------------------HHHH
Confidence            9999999999999999999998865421110                                             0011


Q ss_pred             chHHHHHHHHhhhhccccccCcc
Q 022764          267 GAIEVVQCLMEQHNAIFTDANET  289 (292)
Q Consensus       267 ~~~~vv~~lIe~~~~iF~~~~~~  289 (292)
                      + ..+|++||+||+.||.+.++.
T Consensus       201 ~-~~vve~LI~~~~~iF~~~~~~  222 (231)
T 1f7c_A          201 Q-NIVIEILIENHEKIFNTVPET  222 (231)
T ss_dssp             H-HHHHHHHHHTHHHHHHSCCC-
T ss_pred             H-HHHHHHHHHHHHHhCCCCCCC
Confidence            2 238999999999999988764

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=303.75  Aligned_cols=167  Identities=30%  Similarity=0.412  Sum_probs=152.7

Q ss_pred             cCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhh
Q 022764           44 KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFD  123 (292)
Q Consensus        44 ~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~  123 (292)
                      .+..+.++||+||.+++++.  +..||.+|.+|+++|+++|+++|||||++|+..++++|++.++.++.....++.|+|+
T Consensus        13 ~~~~~~~vFGv~L~~~~~~~--~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~   90 (228)
T 3kuq_A           13 NLYFQGSVFGVPLTVNVQRT--GQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYD   90 (228)
T ss_dssp             -CBCTTSSTTCCHHHHHHHH--SSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHH
T ss_pred             CCCCCCCEECCchHHHHHHc--CCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHH
Confidence            34567899999999999886  4689999999999999999999999999999999999999998765444446789999


Q ss_pred             hHHHHHHHHhhCCCCCCchhhhHHHHhHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhh
Q 022764          124 VAALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL  197 (292)
Q Consensus       124 va~lLK~fLr~Lp~PLi~~~~~~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nL  197 (292)
                      ||++||.|||+||+||+|.++|+.|+++.      ++++.++.++.+||+.|+.+|.||+.||++|+.+++.|+||+.||
T Consensus        91 va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL  170 (228)
T 3kuq_A           91 VADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL  170 (228)
T ss_dssp             HHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHh
Confidence            99999999999999999999999999873      478999999999999999999999999999999999999999999


Q ss_pred             hHhhccccccCCCCC
Q 022764          198 AMEMAPVIMWQKERK  212 (292)
Q Consensus       198 a~vf~P~Ll~~~~~~  212 (292)
                      |+||||+|||++..+
T Consensus       171 Aivf~P~Ll~~~~~~  185 (228)
T 3kuq_A          171 AVCLAPSLFHLNTLK  185 (228)
T ss_dssp             HHHHHHHHHTCCCC-
T ss_pred             HHHHhhhhcCCCCCC
Confidence            999999999988654

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=100.00  E-value=2e-41  Score=291.60  Aligned_cols=157  Identities=27%  Similarity=0.359  Sum_probs=141.3

Q ss_pred             CCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCC-chhhhHHHHHHH
Q 022764           53 GVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGV-NPFDVAALAKYY  131 (292)
Q Consensus        53 G~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~-d~~~va~lLK~f  131 (292)
                      |..|++++.+  .+..||.++.+|+++|+++|+++|||||++|+..++++|++.+++|......... |+|++|++||.|
T Consensus         3 ~g~L~~~~~~--~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~f   80 (201)
T 2ovj_A            3 EGMLADFVSQ--TSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDF   80 (201)
T ss_dssp             CCCGGGGCCS--SSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHH
T ss_pred             CCcHHHHhcc--cCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHH
Confidence            4567777655  3679999999999999999999999999999999999999999998765433444 999999999999


Q ss_pred             HhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccc
Q 022764          132 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI  205 (292)
Q Consensus       132 Lr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~L  205 (292)
                      ||+||+||+|.++|+.|+++      ..+++.++.++.+||+.|+.+|.||+.||++|+++ +.|+|+++|||+||||+|
T Consensus        81 lreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~l  159 (201)
T 2ovj_A           81 LRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTI  159 (201)
T ss_dssp             HHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhh
Confidence            99999999999999999987      35788999999999999999999999999999996 689999999999999999


Q ss_pred             ccCCCCC
Q 022764          206 MWQKERK  212 (292)
Q Consensus       206 l~~~~~~  212 (292)
                      ++++..+
T Consensus       160 l~~~~~~  166 (201)
T 2ovj_A          160 VAHAVPN  166 (201)
T ss_dssp             TCCSSSS
T ss_pred             cCCCCCC
Confidence            9987654

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.6e-42  Score=308.27  Aligned_cols=163  Identities=25%  Similarity=0.326  Sum_probs=135.6

Q ss_pred             CCCCCccCCCHHHHHhhhc-CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhh
Q 022764           46 VASTDVFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV  124 (292)
Q Consensus        46 ~~~~~vFG~~L~~l~~~~~-~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~v  124 (292)
                      ..+.++||+||++++++.. .+..||.+|.+|+.+|++ |+++|||||++|+...++.|++.+|.|...  ....|+|++
T Consensus        59 ~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~--~~~~~~~~v  135 (271)
T 3eap_A           59 EIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC--LSSAPPCDI  135 (271)
T ss_dssp             --CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred             CCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC--cccccHHHH
Confidence            3467899999999876432 245799999999999975 799999999999999999999999988754  345799999


Q ss_pred             HHHHHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764          125 AALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM  199 (292)
Q Consensus       125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~  199 (292)
                      |++||.|||+||+||+|.++|+.|+++     .++...++.++..||+.|+.+|.||+.||++|+.+++.|+||+.|||+
T Consensus       136 a~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi  215 (271)
T 3eap_A          136 AGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAV  215 (271)
T ss_dssp             HHHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence            999999999999999999999999987     346778888999999999999999999999999999999999999999


Q ss_pred             hhccccccCCCC
Q 022764          200 EMAPVIMWQKER  211 (292)
Q Consensus       200 vf~P~Ll~~~~~  211 (292)
                      ||||+|+++++.
T Consensus       216 vf~P~Ll~~~~~  227 (271)
T 3eap_A          216 IFAPNLLQTSEG  227 (271)
T ss_dssp             HHHHHHHTCCCC
T ss_pred             HHHhHhccCCCC
Confidence            999999999864

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=100.00  E-value=1.5e-39  Score=312.47  Aligned_cols=163  Identities=23%  Similarity=0.382  Sum_probs=149.3

Q ss_pred             CCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCC-CCCCC--CCCchhhhH
Q 022764           49 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-NASLP--EGVNPFDVA  125 (292)
Q Consensus        49 ~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~-~~~~~--~~~d~~~va  125 (292)
                      .++||++|++++++.  +..||.+|..|+++|+++|+.+|||||++|+.+.+++|++.+|++. ..++.  ...|+|+||
T Consensus       267 ~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va  344 (463)
T 3cxl_A          267 KKVYSCDLTTLVKAH--TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIIT  344 (463)
T ss_dssp             CCCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHH
T ss_pred             ccccccccchhhhcc--CCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhh
Confidence            579999999999876  5699999999999999999999999999999999999999999754 23332  236999999


Q ss_pred             HHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764          126 ALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM  199 (292)
Q Consensus       126 ~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~  199 (292)
                      ++||.|||+||+||+|.++|+.|+++      .++++.++.++.+||++|+.+|.||+.||++|+.+++.|+|++.|||+
T Consensus       345 ~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAi  424 (463)
T 3cxl_A          345 GALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI  424 (463)
T ss_dssp             HHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred             hHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH
Confidence            99999999999999999999999987      357899999999999999999999999999999999999999999999


Q ss_pred             hhccccccCCCCCh
Q 022764          200 EMAPVIMWQKERKP  213 (292)
Q Consensus       200 vf~P~Ll~~~~~~~  213 (292)
                      ||||+|+++++.++
T Consensus       425 vf~P~Ll~~~~~~~  438 (463)
T 3cxl_A          425 VFGPTLMRSPELDA  438 (463)
T ss_dssp             HHHHHHCCCCCSCT
T ss_pred             HhhccccCCCCccH
Confidence            99999999987653

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=100.00  E-value=4.5e-40  Score=285.28  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=126.1

Q ss_pred             CCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHH
Q 022764           47 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA  126 (292)
Q Consensus        47 ~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~  126 (292)
                      ...++||+||++++++...+..||.+|.+|+++|+++|+++|||||++|+.     +++   .+...++ +..|+|++|+
T Consensus        18 ~~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl-~~~dvh~va~   88 (214)
T 2xs6_A           18 LYFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDV-DQWDTAALAD   88 (214)
T ss_dssp             -------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTG-GGCCHHHHHH
T ss_pred             CCCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCC-ccCCHHHHHH
Confidence            356799999999998644457899999999999999999999999999998     333   1222333 4589999999


Q ss_pred             HHHHHHhhCCCCCCchhhhHHHHhHHH---HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764          127 LAKYYLASLPEPLTTFELYDEIKGARS---SIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP  203 (292)
Q Consensus       127 lLK~fLr~Lp~PLi~~~~~~~~~~~~~---~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P  203 (292)
                      +||.|||+||+||+|.++|+.|+++..   ..+.+..++.+||+.|+.+|+||+.||++|+.+++.|||++.|||+||||
T Consensus        89 lLK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P  168 (214)
T 2xs6_A           89 GIKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGP  168 (214)
T ss_dssp             HHHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhh
Confidence            999999999999999999999998743   11223378899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCC
Q 022764          204 VIMWQKERK  212 (292)
Q Consensus       204 ~Ll~~~~~~  212 (292)
                      +|+|++.++
T Consensus       169 ~Ll~~~~~~  177 (214)
T 2xs6_A          169 LLLRAPPPP  177 (214)
T ss_dssp             HHHC-----
T ss_pred             hhcCCcccc
Confidence            999998754

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=100.00  E-value=1.1e-36  Score=283.97  Aligned_cols=166  Identities=19%  Similarity=0.303  Sum_probs=150.2

Q ss_pred             CCCCCCccCCCHHHHHhhhc-------------------------------------CCCCCCHHHHHHHHHHHHcCCCC
Q 022764           45 GVASTDVFGVPIEVTVQRQQ-------------------------------------YGKPVPHILVKCADYLVLSGLNS   87 (292)
Q Consensus        45 ~~~~~~vFG~~L~~l~~~~~-------------------------------------~~~~vP~~l~~~i~~l~~~gl~~   87 (292)
                      +...+++||+||++++...+                                     .+..||.+|.+|++||+++|+.+
T Consensus       138 ~~~~~s~FG~sl~~l~~~~~pir~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~iP~~v~~~i~~l~~~Gl~~  217 (366)
T 3qis_A          138 GNYLPSCFGTSLEALCRMKRPIREVPVTKLIDLEEDSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQ  217 (366)
T ss_dssp             EEECCCSTTSCHHHHHHCCSCTTC---------------------------------CCCSSCHHHHHHHHHHHHHCTTC
T ss_pred             cccCCccccCcHHHHHHhccchhhcChhhhhhccccchhhhcccccccccccccccCCCCCcChHHHHHHHHHHhcCCCC
Confidence            33468899999999986541                                     12389999999999999999999


Q ss_pred             cCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhHHHHHHHHHHHHhhhcH
Q 022764           88 QFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSN  167 (292)
Q Consensus        88 eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~~~~~~~l~~ll~~LP~  167 (292)
                      |||||++|+..+++.|++.+|.|....+.  .|+|++|++||.|||+||+||+|.++|+.|+++....+.++.++.+||+
T Consensus       218 eGIFR~~G~~~~v~~L~~~~d~~~~~~~~--~dvh~va~lLK~fLReLPePLi~~~ly~~~~~~~~~~~~~~~ll~~LP~  295 (366)
T 3qis_A          218 EDLFQTPGMQEELQQIIDCLDTSIPETIP--GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPR  295 (366)
T ss_dssp             TTTTTSCCCHHHHHHHHHHHHHCCCSSCC--SCHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHHTTCHHHHHHHHHTSCH
T ss_pred             CCeEeCCCCHHHHHHHHHHHcCCCCCccc--cCHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHhhhHHHHHHHHHHCCH
Confidence            99999999999999999999998766542  4999999999999999999999999999999997767789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCC
Q 022764          168 VNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK  212 (292)
Q Consensus       168 ~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~  212 (292)
                      .|+.+|.||+.||++|+.|++.|+||++|||+||||+|||++...
T Consensus       296 ~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~  340 (366)
T 3qis_A          296 CHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNL  340 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcc
Confidence            999999999999999999999999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	4e-34
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	1e-28
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	2e-23
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	3e-21

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 4e-34
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
            FGV ++   ++    +P+P +L +   YL    L ++ +F+   + +V++ +   YN  
Sbjct: 6   QFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG 65

Query: 111 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTLKKL 165
                 +       A + K +L  LPEPL TF+LY  + G  +      + A    L+ L
Sbjct: 66  LPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTL 125

Query: 166 SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210
              N+  L ++TA L+++S  S  NKM   +LA+   P ++W K+
Sbjct: 126 PEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 170

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 1e-28
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 11/173 (6%)

Query: 51  VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 110
           V+   +   V+        P ++  C   +   GL S+ L++  G  + I+ +   +++D
Sbjct: 2   VYCCDLTTLVKAH--NTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRD 59

Query: 111 PNA---SLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSS------IHAMRNT 161
                 S     +   +    K Y   LP P+ T++ Y +   A         + A+   
Sbjct: 60  GEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEV 119

Query: 162 LKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
           L  L   ++ TL Y+   L +V+     N M+A +L +   P +M   E    
Sbjct: 120 LMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTL 172

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (230), Expect = 2e-23
 Identities = 31/163 (19%), Positives = 66/163 (40%), Gaps = 12/163 (7%)

Query: 63  QQYGKP--VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVN 120
           +Q+  P   P +L+K  + +   GL    L++ +     +  L  + + D  +   E ++
Sbjct: 6   EQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSN-LAELRQLLDCDTPSVDLEMID 64

Query: 121 PFDVAALAKYYLASLPEPLTTFELYDEIKGA---------RSSIHAMRNTLKKLSNVNFM 171
              +A   K YL  LP P+    +Y E+               +         + +  ++
Sbjct: 65  VHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWL 124

Query: 172 TLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214
           TL+Y+     ++SQ S  N ++AR L+   +P++        +
Sbjct: 125 TLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSD 167

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 86.7 bits (214), Expect = 3e-21
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 11/153 (7%)

Query: 72  ILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-----GVNPFDVAA 126
           I+ KC   +   G+N Q L++  G    +Q L+S+      A+  E           + +
Sbjct: 10  IIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITS 69

Query: 127 LAKYYLASLPEPLTTFELYDEIKGARSS------IHAMRNTLKKLSNVNFMTLEYVTALL 180
             K YL  LP PL  ++       A         +  + + + +L   N   L  +   L
Sbjct: 70  ALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHL 129

Query: 181 LRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP 213
            +V+     N M   +L +   P ++  +E   
Sbjct: 130 AKVADNHKQNLMTVANLGVVFGPTLLRPQEETV 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	100.0
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	100.0
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	100.0
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	100.0

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-44  Score=304.97  Aligned_cols=162  Identities=21%  Similarity=0.355  Sum_probs=148.2

Q ss_pred             CccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC-CC--CCCCchhhhHH
Q 022764           50 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SL--PEGVNPFDVAA  126 (292)
Q Consensus        50 ~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~--~~~~d~~~va~  126 (292)
                      ++||+||+.+++++  +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+++.. ++  ....|+|++|+
T Consensus         1 kiFg~~L~~~~~~~--~~~iP~iv~~~i~~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~   78 (196)
T d1xa6a1           1 KVYCCDLTTLVKAH--NTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITG   78 (196)
T ss_dssp             CCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHH
T ss_pred             CccCCCHHHHHHhc--CCCCChHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHHHH
Confidence            48999999999886  458999999999999999999999999999999999999999986533 22  23468999999


Q ss_pred             HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764          127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME  200 (292)
Q Consensus       127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v  200 (292)
                      +||+|||+||+||+|.++|+.+..+      ..+++.++.++.+||+.|+.+|.||+.||++|+.|++.|+||++|||+|
T Consensus        79 ~lK~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA~~  158 (196)
T d1xa6a1          79 ALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIV  158 (196)
T ss_dssp             HHHHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHHHH
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHH
Confidence            9999999999999999999999876      4578999999999999999999999999999999999999999999999


Q ss_pred             hccccccCCCCCh
Q 022764          201 MAPVIMWQKERKP  213 (292)
Q Consensus       201 f~P~Ll~~~~~~~  213 (292)
                      |||+|++++.++.
T Consensus       159 f~P~l~~~~~~~~  171 (196)
T d1xa6a1         159 FGPTLMRPPEDST  171 (196)
T ss_dssp             HTTTSCCCCCSCT
T ss_pred             hccccccCCCccH
Confidence            9999999887654

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-42  Score=295.20  Aligned_cols=164  Identities=27%  Similarity=0.488  Sum_probs=153.5

Q ss_pred             CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHH
Q 022764           48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL  127 (292)
Q Consensus        48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l  127 (292)
                      .+++||+||+++++++..+..||.++.+|++||+++|+++|||||++|+.+.++++++.++.|...++....++|+||++
T Consensus         3 ~~~~FG~~L~~l~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~va~~   82 (196)
T d1tx4a_           3 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPAVI   82 (196)
T ss_dssp             TTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHHHH
T ss_pred             CCCCcCCCHHHHHhhCCCCCCCChHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhCCCCccccccccHHHHHHH
Confidence            56899999999999877778899999999999999999999999999999999999999999987776556689999999


Q ss_pred             HHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhc
Q 022764          128 AKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA  202 (292)
Q Consensus       128 LK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~  202 (292)
                      ||.|||+||+||+|.+.|+.++++     .+++..++.++.+||+.|+.+|.+|+.||++|+.|++.|+|+++|||+|||
T Consensus        83 lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~nLa~~f~  162 (196)
T d1tx4a_          83 LKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFG  162 (196)
T ss_dssp             HHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHhCCCCcchHHHHHHHHHHHhcChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence            999999999999999999999876     357889999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCC
Q 022764          203 PVIMWQKER  211 (292)
Q Consensus       203 P~Ll~~~~~  211 (292)
                      |+|+++++.
T Consensus       163 P~l~~~~~~  171 (196)
T d1tx4a_         163 PNLLWAKDA  171 (196)
T ss_dssp             HHHCCCSSH
T ss_pred             hhhcCCCCc
Confidence            999998753

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=275.26  Aligned_cols=157  Identities=19%  Similarity=0.328  Sum_probs=139.1

Q ss_pred             HHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCC
Q 022764           59 TVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEP  138 (292)
Q Consensus        59 l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~P  138 (292)
                      +.++..++..||.+|.+|+++|+++|+++|||||++|+. +++++++.++++......+..|+|++|++||+|||+||+|
T Consensus         4 l~~~~~~~~~vP~~l~~~i~~ie~~gl~~eGIFR~~g~~-~i~~l~~~~~~~~~~~~~~~~~~~~va~lLK~flreLp~p   82 (184)
T d1pbwa_           4 LAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSS-NLAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNP   82 (184)
T ss_dssp             HHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSC-CTTHHHHHSCSSSSCCCGGGBCHHHHHHHHHHHHHTSSSC
T ss_pred             hhhhhCCCCCCCHHHHHHHHHHHHhCCCCCCeeeCCchH-HHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHHhCCCc
Confidence            444444567899999999999999999999999999985 6899999999886544456789999999999999999999


Q ss_pred             CCchhhhHHHHhH-------HHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCC
Q 022764          139 LTTFELYDEIKGA-------RSSIHAMRNTLK--KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQK  209 (292)
Q Consensus       139 Li~~~~~~~~~~~-------~~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~  209 (292)
                      |+|.++|+.|+++       .++++.++.++.  +||+.|+.+|.||+.||++|+.|++.|+||+.|||+||||+|+|++
T Consensus        83 lip~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LP~~n~~~L~~L~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~  162 (184)
T d1pbwa_          83 VIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFS  162 (184)
T ss_dssp             SSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCS
T ss_pred             cccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhhcccHhHHHHHhcchhcCCC
Confidence            9999999999865       346778888886  6999999999999999999999999999999999999999999998


Q ss_pred             CCChHHH
Q 022764          210 ERKPEFY  216 (292)
Q Consensus       210 ~~~~~~~  216 (292)
                      +.+....
T Consensus       163 ~~~~~~~  169 (184)
T d1pbwa_         163 AASSDNT  169 (184)
T ss_dssp             SCCHHHH
T ss_pred             CCChhhH
Confidence            8775433

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.2e-39  Score=274.58  Aligned_cols=175  Identities=22%  Similarity=0.297  Sum_probs=149.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC-----CCCCCchhhhHHHHHHHHhhCCCCCCch
Q 022764           68 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-----LPEGVNPFDVAALAKYYLASLPEPLTTF  142 (292)
Q Consensus        68 ~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-----~~~~~d~~~va~lLK~fLr~Lp~PLi~~  142 (292)
                      .+|.+|.+|+++|+++|+++|||||++|+..+++++++.++++....     ...++|+|++|++||+|||+||+||+|.
T Consensus         6 ~~~~iv~~ci~~l~~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp~pLi~~   85 (191)
T d1f7ca_           6 IGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMY   85 (191)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCH
T ss_pred             cccHHHHHHHHHHHHhCCCCCCeeeCCCCHHHHHHHHHHHhCcCcccccccccccccCHHHHHHHHHHHHHhCCCCccHH
Confidence            56889999999999999999999999999999999999999876432     2346899999999999999999999999


Q ss_pred             hhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChHHH
Q 022764          143 ELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFY  216 (292)
Q Consensus       143 ~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~  216 (292)
                      ++|+.+..+      ..+...++.++.+||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+|+++++.+....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~~~~~  165 (191)
T d1f7ca_          86 QFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAI  165 (191)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSGG
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHhhchhcCCCCcchHHH
Confidence            999999876      45788999999999999999999999999999999999999999999999999999876543211


Q ss_pred             HHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHHHhhhhccccccCc
Q 022764          217 RQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANE  288 (292)
Q Consensus       217 ~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~lIe~~~~iF~~~~~  288 (292)
                      ...                                              ....+++++||+||+.||++.+|
T Consensus       166 ~~~----------------------------------------------~~~~~iv~~LI~~~~~iF~~~p~  191 (191)
T d1f7ca_         166 MDI----------------------------------------------KFQNIVIEILIENHEKIFNTVPE  191 (191)
T ss_dssp             GGH----------------------------------------------HHHHHHHHHHHHTHHHHHHSCCC
T ss_pred             HHH----------------------------------------------HHHHHHHHHHHHHHHHHCCCCCC
Confidence            100                                              02234899999999999999876