Citrus Sinensis ID: 022766

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MILAATSGFCSVPTCPSLDQSKKLNRGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEHLEKNI
cEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccEEEccccccccEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEccccccEEccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHccc
cEEEEcccccccccccccccccccccccccEEcccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccEEccccccHHHEccccccccccEEEEccccEEEEcccccEEEEEEEHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccEEEEEEEEEEccEEEcEEEEEccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccHHHccccc
milaatsgfcsvptcpsldqskklnrgkifceskqvlysktsitherrktcecfdlykelvpyneawSWQKNVVKEKKALIERnedcpdtlivlqhspvytmgtggseeylnfdlkdppfqvyrterggevtyhgpgqlvmYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASrvegltgvwvgdQKLAAIGIRVSQWIAYHGLAlnvttdltpfrwivpcgiqnrhvGSIKgllgesqsltaefrhpddckliDIAHNSLIKEFSEVFQLeihnkaiplsehlekni
milaatsgfcsvptcpsldqskklnrgkifceskqvlysktsitherrkTCECFDLYKELVpyneawswqkNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGgevtyhgpgqLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKasrvegltgvwvgdQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIhnkaiplsehlekni
MILAATSGFCSVPTCPSLDQSKKLNRGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEHLEKNI
*******GFCSVPTC********LNRGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAI**********
********FC******************************************CFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNK************
MILAATSGFCSVPTCPSLDQSKKLNRGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEHLEKNI
MILAATSGFCSVPTCPS**QSKKLNRGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEH*****
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MILAATSGFCSVPTCPSLDQSKKLNRGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEHLEKNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
Q948J9278 Plastidial lipoyltransfer yes no 0.811 0.852 0.720 1e-102
P0C7R2280 Putative lipoyltransferas no no 0.938 0.978 0.600 1e-99
Q5N180233 Octanoyltransferase OS=Sy yes no 0.678 0.849 0.481 5e-53
Q31KN6233 Octanoyltransferase OS=Sy yes no 0.678 0.849 0.481 5e-53
Q8DKM7226 Octanoyltransferase OS=Th yes no 0.702 0.907 0.461 5e-52
Q3M698221 Octanoyltransferase OS=An yes no 0.702 0.927 0.470 8e-52
Q8YSA4221 Octanoyltransferase OS=No yes no 0.708 0.936 0.462 1e-51
P74519227 Octanoyltransferase OS=Sy N/A no 0.695 0.894 0.475 9e-50
Q10ZL5221 Octanoyltransferase OS=Tr yes no 0.578 0.764 0.508 1e-48
B2IVM2230 Octanoyltransferase OS=No yes no 0.613 0.778 0.486 2e-48
>sp|Q948J9|LIP2P_ARATH Plastidial lipoyltransferase 2 OS=Arabidopsis thaliana GN=LIP2p PE=2 SV=1 Back     alignment and function desciption
 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/243 (72%), Positives = 204/243 (83%), Gaps = 6/243 (2%)

Query: 41  TSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVY 100
            S  HE  + C CFDLY +LVPY +AWSWQK++V+EKK LI+RN+DC DT+I+LQHSPVY
Sbjct: 35  NSGNHEIPRKCLCFDLYDKLVPYKKAWSWQKSIVEEKKTLIDRNQDCADTVILLQHSPVY 94

Query: 101 TMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRA 160
           TMGT  +E+YLNFD+KD PF VYRTERGGEVTYHGPGQLVMYPIINLRNH+MDLHWYLR 
Sbjct: 95  TMGTASTEDYLNFDIKDAPFNVYRTERGGEVTYHGPGQLVMYPIINLRNHEMDLHWYLRM 154

Query: 161 LEEVAIRVL-STFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPF 219
           LEE+ IRVL STFSIKASR++GLTGVWVG+QK+AAIGIRVS+WI YHGLALNVTTDLTPF
Sbjct: 155 LEEIVIRVLSSTFSIKASRLDGLTGVWVGNQKVAAIGIRVSKWITYHGLALNVTTDLTPF 214

Query: 220 RWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHN 279
            WIVPCGI++R VG+IKGLL +      E    DD +LIDI H SL+KEFSE FQL+I  
Sbjct: 215 NWIVPCGIRDRKVGNIKGLLED-----GEHGMVDDLRLIDIVHESLLKEFSEAFQLQIEK 269

Query: 280 KAI 282
           + +
Sbjct: 270 QTV 272
Catalyzes the transfer of the endogenously synthesized lipoate to apoproteins, creating an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoate-dependent enzymes. Utilizes lipoyl-acyl-carrier-protein as a source of lipoyl groups, although octanoyl groups from octanoyl-ACP can also be transferred to the lipoyl domain of apoproteins.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -
>sp|P0C7R2|LIPBL_ARATH Putative lipoyltransferase-like protein, chloroplastic OS=Arabidopsis thaliana GN=At1g47578 PE=3 SV=1 Back     alignment and function description
>sp|Q5N180|LIPB_SYNP6 Octanoyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q31KN6|LIPB_SYNE7 Octanoyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q8DKM7|LIPB_THEEB Octanoyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q3M698|LIPB_ANAVT Octanoyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lipB PE=3 SV=2 Back     alignment and function description
>sp|Q8YSA4|LIPB_NOSS1 Octanoyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|P74519|LIPB_SYNY3 Octanoyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q10ZL5|LIPB_TRIEI Octanoyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|B2IVM2|LIPB_NOSP7 Octanoyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lipB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
224067300295 predicted protein [Populus trichocarpa] 0.955 0.945 0.704 1e-109
225436865290 PREDICTED: biotin/lipoate A/B protein li 0.972 0.979 0.671 1e-109
297802928288 lipoyltransferase [Arabidopsis lyrata su 0.815 0.826 0.721 1e-102
449434538301 PREDICTED: plastidial lipoyltransferase 0.917 0.890 0.670 1e-101
18417727278 Plastidial lipoyltransferase 2 [Arabidop 0.811 0.852 0.720 1e-101
255577839303 lipoate-protein ligase B, putative [Rici 0.969 0.933 0.637 1e-101
334183114280 biotin/lipoate A/B protein ligase family 0.938 0.978 0.600 7e-98
5668803 571 F16N3.14 [Arabidopsis thaliana] 0.938 0.479 0.600 2e-97
356567367306 PREDICTED: plastidial lipoyltransferase 0.958 0.915 0.610 6e-96
356509700293 PREDICTED: plastidial lipoyltransferase 0.914 0.911 0.597 3e-94
>gi|224067300|ref|XP_002302455.1| predicted protein [Populus trichocarpa] gi|222844181|gb|EEE81728.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/288 (70%), Positives = 230/288 (79%), Gaps = 9/288 (3%)

Query: 1   MILAAT--SGFCSVPTCPSL---DQSKKLNRGKIFCESKQVLYSKTSITHERRKTCECFD 55
           MI+ AT  S F S P CP+     QS+K+    +    K   +  TS+TH+  K CECFD
Sbjct: 1   MIIQATTTSNFGSFPICPTTRHHSQSRKIIPLNLVSSQKGQEF--TSVTHKGDKMCECFD 58

Query: 56  LYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDL 115
           L+KELVPY +AW+WQK +V+EK  LIERNE+CPDTLIVLQH PVYTMGTG S EYLNFD+
Sbjct: 59  LHKELVPYGDAWNWQKVIVREKSWLIERNEECPDTLIVLQHQPVYTMGTGSSIEYLNFDI 118

Query: 116 KDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVL-STFSI 174
           K+ PF+VYRTERGGEVTYHGPGQL MYPIINLRNHKMDLHWYLR LEEV IRVL STFSI
Sbjct: 119 KNAPFEVYRTERGGEVTYHGPGQLTMYPIINLRNHKMDLHWYLRELEEVVIRVLSSTFSI 178

Query: 175 KASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGS 234
           KASR+EGLTGVWVGDQKLAAIGI+VSQWIAYHGLALNVTTDL PF  IVPCGI+NR VGS
Sbjct: 179 KASRIEGLTGVWVGDQKLAAIGIKVSQWIAYHGLALNVTTDLAPFNLIVPCGIRNRKVGS 238

Query: 235 IKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAI 282
           IKGLL ES S  A+  H D  +LIDI   SLI+EFSEVFQL+I  +++
Sbjct: 239 IKGLLEESCS-NAKAHHFDYTQLIDITSQSLIREFSEVFQLKIQQRSL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225436865|ref|XP_002272498.1| PREDICTED: biotin/lipoate A/B protein ligase family-like [Vitis vinifera] gi|296086674|emb|CBI32309.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297802928|ref|XP_002869348.1| lipoyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297315184|gb|EFH45607.1| lipoyltransferase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449434538|ref|XP_004135053.1| PREDICTED: plastidial lipoyltransferase 2-like [Cucumis sativus] gi|449506341|ref|XP_004162721.1| PREDICTED: plastidial lipoyltransferase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18417727|ref|NP_567866.1| Plastidial lipoyltransferase 2 [Arabidopsis thaliana] gi|75164691|sp|Q948J9.1|LIP2P_ARATH RecName: Full=Plastidial lipoyltransferase 2; AltName: Full=Lipoate-protein ligase 2p; AltName: Full=Lipoyl-[acyl-carrier-protein]-protein-N- lipoyltransferase 2p gi|15887052|dbj|BAB69449.1| lipoyltransferase [Arabidopsis thaliana] gi|62320326|dbj|BAD94675.1| putative protein [Arabidopsis thaliana] gi|90186250|gb|ABD91501.1| At4g31050 [Arabidopsis thaliana] gi|332660451|gb|AEE85851.1| Plastidial lipoyltransferase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255577839|ref|XP_002529793.1| lipoate-protein ligase B, putative [Ricinus communis] gi|223530737|gb|EEF32607.1| lipoate-protein ligase B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|334183114|ref|NP_001185164.1| biotin/lipoate A/B protein ligase family protein [Arabidopsis thaliana] gi|193806055|sp|P0C7R2.1|LIPBL_ARATH RecName: Full=Putative lipoyltransferase-like protein, chloroplastic; AltName: Full=Lipoate-protein ligase-like protein; AltName: Full=Lipoyl-[acyl-carrier-protein]-protein-N- lipoyltransferase-like protein; Flags: Precursor gi|332194068|gb|AEE32189.1| biotin/lipoate A/B protein ligase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5668803|gb|AAD46029.1|AC007519_14 F16N3.14 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356567367|ref|XP_003551892.1| PREDICTED: plastidial lipoyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356509700|ref|XP_003523584.1| PREDICTED: plastidial lipoyltransferase 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2126609278 AT4G31050 [Arabidopsis thalian 0.797 0.838 0.728 6.8e-95
TIGR_CMR|NSE_0100209 NSE_0100 "lipoate-protein liga 0.633 0.885 0.422 6.7e-33
TIGR_CMR|GSU_2434227 GSU_2434 "lipoate-protein liga 0.534 0.687 0.442 5.4e-31
ZFIN|ZDB-GENE-060312-18224 zgc:136925 "zgc:136925" [Danio 0.640 0.834 0.406 1.8e-30
TAIR|locus:2197818235 LIP2 "lipoyltransferase 2" [Ar 0.585 0.727 0.4 3.8e-30
TIGR_CMR|SO_1162219 SO_1162 "lipoate-protein ligas 0.482 0.643 0.409 1.5e-28
FB|FBgn0037251234 CG9804 [Drosophila melanogaste 0.606 0.756 0.360 1.9e-28
TIGR_CMR|ECH_0371214 ECH_0371 "lipoate-protein liga 0.489 0.668 0.423 5e-28
TIGR_CMR|CBU_1265242 CBU_1265 "lipoate-protein liga 0.547 0.661 0.378 1.7e-27
UNIPROTKB|Q10404230 lipB "Octanoyltransferase" [My 0.585 0.743 0.410 3.5e-27
TAIR|locus:2126609 AT4G31050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 174/239 (72%), Positives = 203/239 (84%)

Query:    45 HERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGT 104
             HE  + C CFDLY +LVPY +AWSWQK++V+EKK LI+RN+DC DT+I+LQHSPVYTMGT
Sbjct:    39 HEIPRKCLCFDLYDKLVPYKKAWSWQKSIVEEKKTLIDRNQDCADTVILLQHSPVYTMGT 98

Query:   105 GGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEV 164
               +E+YLNFD+KD PF VYRTERGGEVTYHGPGQLVMYPIINLRNH+MDLHWYLR LEE+
Sbjct:    99 ASTEDYLNFDIKDAPFNVYRTERGGEVTYHGPGQLVMYPIINLRNHEMDLHWYLRMLEEI 158

Query:   165 AIRVLS-TFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIV 223
              IRVLS TFSIKASR++GLTGVWVG+QK+AAIGIRVS+WI YHGLALNVTTDLTPF WIV
Sbjct:   159 VIRVLSSTFSIKASRLDGLTGVWVGNQKVAAIGIRVSKWITYHGLALNVTTDLTPFNWIV 218

Query:   224 PCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAI 282
             PCGI++R VG+IKGLL +      E    DD +LIDI H SL+KEFSE FQL+I  + +
Sbjct:   219 PCGIRDRKVGNIKGLLEDG-----EHGMVDDLRLIDIVHESLLKEFSEAFQLQIEKQTV 272
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0009107 "lipoate biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016415 "octanoyltransferase activity" evidence=IEA
GO:0017118 "lipoyltransferase activity" evidence=ISS
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
TIGR_CMR|NSE_0100 NSE_0100 "lipoate-protein ligase B" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2434 GSU_2434 "lipoate-protein ligase B" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060312-18 zgc:136925 "zgc:136925" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2197818 LIP2 "lipoyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1162 SO_1162 "lipoate-protein ligase B" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
FB|FBgn0037251 CG9804 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0371 ECH_0371 "lipoate-protein ligase B" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1265 CBU_1265 "lipoate-protein ligase B" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q10404 lipB "Octanoyltransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q948J9LIP2P_ARATH2, ., 3, ., 1, ., -0.72010.81160.8525yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.766
3rd Layer2.3.1.1810.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.4099.1
hypothetical protein (233 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_XIII000472
lipoic acid synthase (376 aa)
• •  •• 0.976
eugene3.00050253
lipoic acid synthase (385 aa)
• •  •• 0.975
fgenesh4_pg.C_scaffold_120000064
lipoic acid synthase (397 aa)
• •  •• 0.973
eugene3.107780001
Predicted protein (326 aa)
• •  •• 0.888
eugene3.29520003
annotation not avaliable (742 aa)
      • 0.534
grail3.3134000101
Predicted protein (100 aa)
•     • 0.517
eugene3.09070007
Predicted protein (210 aa)
•     • 0.474
gw1.VII.2254.1
annotation not avaliable (372 aa)
• •     0.429
LPD1
precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)
•     • 0.420

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
COG0321221 COG0321, LipB, Lipoate-protein ligase B [Coenzyme 2e-81
PRK14344223 PRK14344, PRK14344, lipoate-protein ligase B; Prov 7e-71
TIGR00214184 TIGR00214, lipB, lipoate-protein ligase B 3e-66
PRK14341213 PRK14341, PRK14341, lipoate-protein ligase B; Prov 2e-56
PRK14345234 PRK14345, PRK14345, lipoate-protein ligase B; Prov 1e-51
PRK14342213 PRK14342, PRK14342, lipoate-protein ligase B; Prov 9e-49
PRK14348221 PRK14348, PRK14348, lipoate-protein ligase B; Prov 2e-44
PRK14347209 PRK14347, PRK14347, lipoate-protein ligase B; Prov 2e-41
PRK14343235 PRK14343, PRK14343, lipoate-protein ligase B; Prov 2e-38
PRK14346230 PRK14346, PRK14346, lipoate-protein ligase B; Prov 4e-38
PRK14349220 PRK14349, PRK14349, lipoate-protein ligase B; Prov 8e-36
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 3e-16
>gnl|CDD|223398 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information 
 Score =  244 bits (626), Expect = 2e-81
 Identities = 82/232 (35%), Positives = 121/232 (52%), Gaps = 23/232 (9%)

Query: 53  CFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLN 112
                  LV Y EAW   +     +      +   PD + +++H PVYT G  G  E+L 
Sbjct: 11  ILVRELGLVDYQEAWQLMETFTDARA-----DGGTPDEIWLVEHPPVYTAGQAGKAEHL- 64

Query: 113 FDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTF 172
             L      V +T+RGG+VTYHGPGQLV YPI++L+  K+D+  Y+RALE+  I  L+ +
Sbjct: 65  --LMPDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLAEY 122

Query: 173 SIKASRVEGLTGVWV-GDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRH 231
            I+A R     GVWV  ++K+AAIGIR+ + + +HGLALNV  DL+PF  IVPCG     
Sbjct: 123 GIEAERRPDRPGVWVEEERKIAAIGIRIRRGVTFHGLALNVNMDLSPFNRIVPCGYAGME 182

Query: 232 VGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIP 283
           V S+            +   P     +  A   L+  F+++   ++    + 
Sbjct: 183 VTSLS-----------DLGPPVTVDEVAKA---LVAAFAKLLGPKLIVAELT 220

Length = 221
>gnl|CDD|237683 PRK14344, PRK14344, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|232877 TIGR00214, lipB, lipoate-protein ligase B Back     alignment and domain information
>gnl|CDD|237680 PRK14341, PRK14341, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237681 PRK14342, PRK14342, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237682 PRK14343, PRK14343, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237684 PRK14346, PRK14346, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
PRK14344223 lipoate-protein ligase B; Provisional 100.0
PRK14342213 lipoate-protein ligase B; Provisional 100.0
PRK14345234 lipoate-protein ligase B; Provisional 100.0
PRK14348221 lipoate-protein ligase B; Provisional 100.0
PRK14343235 lipoate-protein ligase B; Provisional 100.0
PRK14341213 lipoate-protein ligase B; Provisional 100.0
COG0321221 LipB Lipoate-protein ligase B [Coenzyme metabolism 100.0
PRK14347209 lipoate-protein ligase B; Provisional 100.0
PRK14349220 lipoate-protein ligase B; Provisional 100.0
PRK14346230 lipoate-protein ligase B; Provisional 100.0
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 100.0
KOG0325226 consensus Lipoyltransferase [Energy production and 100.0
TIGR00545324 lipoyltrans lipoyltransferase and lipoate-protein 99.71
PRK03822 338 lplA lipoate-protein ligase A; Provisional 99.69
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 99.63
PRK14061 562 unknown domain/lipoate-protein ligase A fusion pro 99.62
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.48
PRK08330236 biotin--protein ligase; Provisional 99.48
KOG3159336 consensus Lipoate-protein ligase A [Coenzyme trans 98.43
PRK05935190 biotin--protein ligase; Provisional 98.38
COG0340238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 98.17
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 97.99
PTZ00275285 biotin-acetyl-CoA-carboxylase ligase; Provisional 97.87
PRK11886319 bifunctional biotin--[acetyl-CoA-carboxylase] synt 97.55
PTZ00276245 biotin/lipoate protein ligase; Provisional 97.5
PRK08477211 biotin--protein ligase; Provisional 97.26
KOG0325226 consensus Lipoyltransferase [Energy production and 97.09
PRK06955300 biotin--protein ligase; Provisional 96.87
PRK13325 592 bifunctional biotin--[acetyl-CoA-carboxylase] liga 96.84
PF04017183 DUF366: Domain of unknown function (DUF366); Inter 90.98
COG2029189 Uncharacterized conserved protein [Function unknow 89.46
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.2e-69  Score=490.06  Aligned_cols=206  Identities=42%  Similarity=0.795  Sum_probs=188.0

Q ss_pred             eeEEEeccCCcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCCCCcccccCCCCCCCceEEEcccCC
Q 022766           50 TCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGG  129 (292)
Q Consensus        50 ~~~~~~~~~glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~~~~~~l~~~l~~~gi~v~~~~RGG  129 (292)
                      .++++++  |+++|++||++|+++++++..    .+..+|+||+||||||||+|++++.+++.++.++.+++|++++|||
T Consensus        18 ~~~~~~l--g~v~Y~~a~~~Q~~~~~~~~~----~~~~~d~llllEH~pVyT~G~~~~~~~l~~~~~~~~~~v~~~~RGG   91 (223)
T PRK14344         18 AILFEPD--NIVPFEDAWKWQKEWQQALIE----DPSNPQAVWLLEHQLCYTLGRGASEDNLLFSLNNPPADVFRIDRGG   91 (223)
T ss_pred             eEEEecC--CccCHHHHHHHHHHHHHHHhc----CCCCCCEEEEECCCCCeeCCCCCChhhccCccccCCCcEEEcCCCc
Confidence            4455554  999999999999999987642    3456899999999999999999998888765445689999999999


Q ss_pred             ceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCceeecCCCceEEeCCCeEEeecceEeccEEEEeee
Q 022766          130 EVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLA  209 (292)
Q Consensus       130 ~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~GI~a~~~~~~~GVwv~~rKIasIGi~v~r~it~HG~A  209 (292)
                      ++|||||||||+|||+||++++.++++|++.||+++|++|++|||++.+.++.+|||++++||||||+++++|+|+||+|
T Consensus        92 ~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~ii~~l~~~gi~~~~~~~~~GVWv~~~KIaaIGv~v~r~vT~HG~A  171 (223)
T PRK14344         92 EVTHHMPGQLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLADLGIDGERLDGLTGVWIGNKKVASIGIGCRRWITQHGFS  171 (223)
T ss_pred             eeeEECCCcEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCcEEcCCCeEEEEeEeEecceeecceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhccc
Q 022766          210 LNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQL  275 (292)
Q Consensus       210 LNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~  275 (292)
                      |||++||++|+.|+||||+|+.||||+++...          ++    ++++++.++++|+++|++
T Consensus       172 LNv~~dL~~F~~IvPCGl~~~~vTSl~~~~~~----------~~----~~~v~~~l~~~f~~~f~~  223 (223)
T PRK14344        172 LNVDCDLEGFNKIVPCGLEGCQVGRLSDWIPG----------LN----IKEVKPLLKKSLQERFGL  223 (223)
T ss_pred             EecCCCccccCcEEcCCCCCCcEeeHHHHcCC----------CC----HHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999887643          23    788999999999999963

>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14341 lipoate-protein ligase B; Provisional Back     alignment and domain information
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information
>PRK14347 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14349 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14346 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>PRK03822 lplA lipoate-protein ligase A; Provisional Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>KOG3159 consensus Lipoate-protein ligase A [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK06955 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function Back     alignment and domain information
>COG2029 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
2qhs_A237 Structural Basis Of Octanoic Acid Recognition By Li 1e-37
2qht_A210 Structural Basis Of Octanoic Acid Recognition By Li 1e-37
1w66_A232 Structure Of A Lipoate-protein Ligase B From Mycoba 4e-29
>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-protein Ligase B Length = 237 Back     alignment and structure 
Iteration: 1

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 24/219 (10%)
Query: 60  LVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFD---LK 116
           LVPY EAW++QK V +E  A      + P TL++L+H  V T+G   + E L F     +
Sbjct: 30  LVPYGEAWAYQKRVHREVVA-----GNRPPTLLLLEHPRVITLGRKATGENLLFPESWYR 84
Query: 117 DPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKA 176
           +  F++Y  ERGG+VTYHGPGQLV YPI  +     ++  +LR +EE  +RV + + I A
Sbjct: 85  ENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISA 141
Query: 177 SRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIK 236
               G  GVWVG+ KL AIG+ V + +++HG ALNV TDL  F  IVPCG++ + V S++
Sbjct: 142 YPTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLE 201
Query: 237 GLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQL 275
            LLG    +             + A   ++  F+EVF L
Sbjct: 202 KLLGRKVPM-------------EEAKARVVAAFAEVFGL 227
>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-Protein Ligase B Length = 210 Back     alignment and structure
>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium Tuberculosis Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 1e-92
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 1e-92
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Length = 232 Back     alignment and structure
 Score =  273 bits (700), Expect = 1e-92
 Identities = 75/221 (33%), Positives = 106/221 (47%), Gaps = 27/221 (12%)

Query: 60  LVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPP 119
            V Y  AW  Q+ +         R     DTL++L+H  VYT G          +     
Sbjct: 21  TVDYRTAWQLQRELADA------RVAGGADTLLLLEHPAVYTAGRRTETH----ERPIDG 70

Query: 120 FQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRV 179
             V  T+RGG++T+HGPGQLV YPII L    +D+  Y+R LEE  I+V +   + A RV
Sbjct: 71  TPVVDTDRGGKITWHGPGQLVGYPIIGLA-EPLDVVNYVRRLEESLIQVCADLGLHAGRV 129

Query: 180 EGLTGVWVGDQ---KLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIK 236
           +G +GVW+  +   K+AAIG+RVS+    HG ALN   DL  F  IVPCGI +  V S+ 
Sbjct: 130 DGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLS 189

Query: 237 GLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEI 277
             LG + +             +D    ++           +
Sbjct: 190 AELGRTVT-------------VDEVRATVAAAVCAALDGVL 217
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Length = 237 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 100.0
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 100.0
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 100.0
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 100.0
1vqz_A 341 Lipoate-protein ligase, putative; class II AARS an 100.0
3a7r_A 337 Lipoate-protein ligase A; adenylate-forming enzyme 100.0
2e5a_A 347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 99.97
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 98.19
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 98.15
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 98.06
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 98.01
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 98.01
1bia_A321 BIRA bifunctional protein; transcription regulatio 97.74
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 97.36
2ddz_A190 190AA long hypothetical protein; hexamer, structur 88.17
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
Probab=100.00  E-value=1.6e-60  Score=433.51  Aligned_cols=209  Identities=36%  Similarity=0.594  Sum_probs=188.8

Q ss_pred             CceeEEEeccCCcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCCCCcccccCCCCCCCceEEEccc
Q 022766           48 RKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTER  127 (292)
Q Consensus        48 ~~~~~~~~~~~glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~~~~~~l~~~l~~~gi~v~~~~R  127 (292)
                      ++.+.+.++  |+++|+++|++|+.+++.+.      ...+|+|||+|||||||+|++++.+++.    ..||+|++++|
T Consensus        11 ~~~~~~~~l--g~~~Y~~a~~~q~~l~~~~~------~~~~d~l~l~eh~pv~TiG~~q~~~~l~----~~gi~Vvr~~r   78 (232)
T 1w66_A           11 LSAIDVRQL--GTVDYRTAWQLQRELADARV------AGGADTLLLLEHPAVYTAGRRTETHERP----IDGTPVVDTDR   78 (232)
T ss_dssp             CSCCEEEEE--EECCHHHHHHHHHHHHHHHH------TTCCCEEEEEECCSEEEECTTCCGGGSC----TTCCCCEECSS
T ss_pred             CceEEEEeC--CCcCHHHHHHHHHHHHHHhh------CCCCCEEEEEecCCEEEeCCCCChhhhc----ccCCeEEEecC
Confidence            356788887  99999999999999999764      2367999999999999999999987653    45899999999


Q ss_pred             CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCceeecCCCceEEeC---CCeEEeecceEeccEE
Q 022766          128 GGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVG---DQKLAAIGIRVSQWIA  204 (292)
Q Consensus       128 GG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~GI~a~~~~~~~GVwv~---~rKIasIGi~v~r~it  204 (292)
                      ||++|||||||||+|||+||++ +.++++|++.||+++|++|+.|||+|.++++++||||+   ++||||+|+++++|+|
T Consensus        79 GG~~tYHgPGQlv~Y~Il~l~~-~~~v~~~v~~le~~vI~~L~~~Gi~a~~~~g~~gV~v~~~~~rKIaaig~r~~~~vt  157 (232)
T 1w66_A           79 GGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATT  157 (232)
T ss_dssp             SSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSSSCEEEEEEEEEEETTEE
T ss_pred             CCceEEECCCCeEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHcCCCeEecCCCCeEEecCCCCCEEEEeeeeeeCCEE
Confidence            9999999999999999999988 88999999999999999999999999999999999999   9999999999999999


Q ss_pred             EEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcccccccCCC
Q 022766          205 YHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAI  282 (292)
Q Consensus       205 ~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~~~~~~  282 (292)
                      +||+||||++||++|..|+|||+.++.||||+++++..         ++    ++++++.|+++|++.|+.++...+.
T Consensus       158 ~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~---------~~----~~ev~~~l~~~f~~~~~~~~~~~~~  222 (232)
T 1w66_A          158 LHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRT---------VT----VDEVRATVAAAVCAALDGVLPVGDR  222 (232)
T ss_dssp             EEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSC---------CC----HHHHHHHHHHHHHHHHTTCCC----
T ss_pred             EcceEEecCcChHHhcCccccccCCCceeeeHHHhCCC---------CC----HHHHHHHHHHHHHHHhCcccccccc
Confidence            99999999999999999999999999999999877643         34    7899999999999999987665543
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 292
d1w66a1216 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycoba 6e-37
d2c8ma1256 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Ther 2e-23
d1vqza2241 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-te 1e-18
d1x2ga2246 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal do 6e-18
d2p5ia1265 d.104.1.3 (A:14-278) Hypothetical protein BH3822 { 1e-17
d2p0la1269 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Stre 2e-15
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  129 bits (324), Expect = 6e-37
 Identities = 75/218 (34%), Positives = 104/218 (47%), Gaps = 27/218 (12%)

Query: 60  LVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPP 119
            V Y  AW  Q+ +         R     DTL++L+H  VYT G                
Sbjct: 19  TVDYRTAWQLQRELADA------RVAGGADTLLLLEHPAVYTAGRRTETHERPI----DG 68

Query: 120 FQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRV 179
             V  T+RGG++T+HGPGQLV YPII L    +D+  Y+R LEE  I+V +   + A RV
Sbjct: 69  TPVVDTDRGGKITWHGPGQLVGYPIIGLAEP-LDVVNYVRRLEESLIQVCADLGLHAGRV 127

Query: 180 EGLTGVWVGDQ---KLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIK 236
           +G +GVW+  +   K+AAIG+RVS+    HG ALN   DL  F  IVPCGI +  V S+ 
Sbjct: 128 DGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLS 187

Query: 237 GLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 274
             LG + +             +D    ++         
Sbjct: 188 AELGRTVT-------------VDEVRATVAAAVCAALD 212
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256 Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241 Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265 Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 100.0
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 99.95
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 99.94
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 99.94
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 99.94
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 99.93
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 98.72
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 97.61
d2ddza1188 Uncharacterized protein PH0223 {Pyrococcus horikos 86.77
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-66  Score=467.75  Aligned_cols=211  Identities=36%  Similarity=0.603  Sum_probs=191.7

Q ss_pred             CccccccCceeEEEeccCCcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCCCCcccccCCCCCCCc
Q 022766           41 TSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPF  120 (292)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~~~~~~l~~~l~~~gi  120 (292)
                      .+.+..+.+.+++.++  |+++|+++|++|+++++.+.      ...+|++|+||||||||+|++++.+++.    ..++
T Consensus         2 ~~~~~~~~~~i~i~~L--G~v~Y~~a~~~q~~~~~~~~------~~~~d~llllEH~pVyT~G~~~~~~~~~----~~~i   69 (216)
T d1w66a1           2 AGSIRSKLSAIDVRQL--GTVDYRTAWQLQRELADARV------AGGADTLLLLEHPAVYTAGRRTETHERP----IDGT   69 (216)
T ss_dssp             SSCCBSCCSCCEEEEE--EECCHHHHHHHHHHHHHHHH------TTCCCEEEEEECCSEEEECTTCCGGGSC----TTCC
T ss_pred             CchhhhcCCceEEEEC--CccCHHHHHHHHHHHHHHHh------CCCCCeEEEEecCCceeecccCcccccc----cccc
Confidence            3455667788999997  99999999999999998864      2358999999999999999999877654    3489


Q ss_pred             eEEEcccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCceeecCCCceEEeCCC---eEEeecc
Q 022766          121 QVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQ---KLAAIGI  197 (292)
Q Consensus       121 ~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~GI~a~~~~~~~GVwv~~r---KIasIGi  197 (292)
                      ||++|+|||++|||||||||+|||+||++ +.++++|++.||+++|++|+.|||++.+.++.+|||++++   ||||||+
T Consensus        70 ~v~~tdRGG~vTyHGPGQlV~Ypil~l~~-~~~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~~~~~KIasiGv  148 (216)
T d1w66a1          70 PVVDTDRGGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGV  148 (216)
T ss_dssp             CCEECSSSSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSSSCEEEEEEEE
T ss_pred             ceeecCCCceEEEecCCceeeEEEecccc-ccchhhhHHHHHHHHHHHHHhccccccccccCCceeeecchhhHHHHHHH
Confidence            99999999999999999999999999986 6899999999999999999999999999999999999865   9999999


Q ss_pred             eEeccEEEEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhccccc
Q 022766          198 RVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEI  277 (292)
Q Consensus       198 ~v~r~it~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~  277 (292)
                      ++++||||||+||||++||++|+.|+|||+++..||||+++++..         ++    ++++++.++++|++.|+..+
T Consensus       149 ~v~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~---------v~----~~ev~~~l~~~~~~~f~~~~  215 (216)
T d1w66a1         149 RVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRT---------VT----VDEVRATVAAAVCAALDGVL  215 (216)
T ss_dssp             EEETTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSC---------CC----HHHHHHHHHHHHHHHHTTCC
T ss_pred             HhccceeecceEEeccCChhhcCeEEcCCCCCCceeeeHHHhCCC---------CC----HHHHHHHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999999999888743         34    78999999999999998654
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure