Citrus Sinensis ID: 022783

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIYGS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHccccccccccHHHHccccEEEEEEccccEEEEEEEccccEEEEEEccccccccccccccccEEEEEEEccccEEEEccccHHHHHHHHcccccEEEEEEcccccHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHcccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEEccccccccccccccccccccEEEEEEEEccccEEEEEccccccEEEEEEcccccHHHcccEEcccEEEEEEcccccccccHHHccHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccc
Coil and Loop (DISEMBL)
mslapssyaslysppplprtnqnpflfsqnshvwfkkncflsasgcscntllvkpSVFVAKAseteaqaspeaesgseeqeEKYEEYEVEIeqpyglkfakgrdggtyidaiapggsadktgmfqvGDKVLATSAVfgteiwpaaeygrtMYTIRQRVGPLLMKMQKRYgkmeqtgelSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFEsvlgskptpeessvasYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIYGS
Flexible Loop (DISEMBL)
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASeteaqaspeaesgseeqeEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGteiwpaaeygrtmYTIRQRVGPLLMKMQKRYGKmeqtgelsekeiiraernsgvisnrvreiqmqnymkkkeqkerreqdlreglqlyrtgkyevAREKFesvlgskptpeesSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIYGS
Low Complexity Region (SEG)
MslapssyaslysppplpRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETeaqaspeaesgseeqeekyeeyeveieqpyGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMkkkeqkerreqDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIYGS
Disordered region (IsUnstruct)
************************FLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVA****************************VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM***********************************************************LYRTGKY**********************ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIY**
Disordered Region (DISOPRED)
*************************************************************************************EYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK**************EIIR********************************DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIY**
Disordered Region (DISEMBL)
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKAS*************************VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYM***********DLREGLQLYRTGKYEVAREKFE***************SYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIYGS
Disordered Region (DISPRO)
************SPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASE*****************EKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIYGS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQxxxxxxxxxxxxxxxxxxxxxLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIYGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
F4J117	591	Phosphoglucan phosphatase	no	no	0.291	0.143	0.270	0.0001

>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis thaliana GN=LSF1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%)

Query: 85  EEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPA 144
            EY V +E+P G++FA   DG  ++ AI  G +A+K  +  VGD +   S   G  +   
Sbjct: 75  NEYMVTLEKPLGIRFALSADGKIFVHAIKKGSNAEKARIIMVGDTLKKASDSSGGTLVEI 134

Query: 145 AEYGRTMYTIRQRVGPLLMKMQKRY 169
            ++G T   + ++ G   + +++ +
Sbjct: 135 KDFGDTKKMLVEKTGSFSLVLERPF 159

Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation. Participates to the regulation of the initial steps of starch degradation at the granule surface. May release a different set of phosphate groups from those removed by DSP4.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
224073126	344	predicted protein [Populus trichocarpa]	0.989	0.840	0.716	1e-113
225435790	329	PREDICTED: uncharacterized protein LOC10	0.941	0.835	0.758	1e-112
255564826	337	protein binding protein, putative [Ricin	0.982	0.851	0.732	1e-110
357519275	335	hypothetical protein MTR_8g088420 [Medic	0.969	0.844	0.670	1e-105
297847910	335	binding protein [Arabidopsis lyrata subs	0.924	0.805	0.715	1e-103
449463844	337	PREDICTED: uncharacterized protein LOC10	0.976	0.845	0.656	1e-102
357519277	332	hypothetical protein MTR_8g088420 [Medic	0.958	0.843	0.663	1e-102
147789082	1051	hypothetical protein VITISV_041015 [Viti	0.815	0.226	0.793	1e-101
18405391	335	ZKT protein containing PDZ, K-box and a	0.921	0.802	0.727	1e-100
21595827	335	unknown [Arabidopsis thaliana]	0.921	0.802	0.724	6e-99

>gi|224073126|ref|XP_002303984.1| predicted protein [Populus trichocarpa] gi|222841416|gb|EEE78963.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/300 (71%), Positives = 241/300 (80%), Gaps = 11/300 (3%)

Query: 1   MSLAPSSYASLYSPPPLPRTN----QNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPS 56
           MSLAPS Y +LYS  PLP ++    Q P LFSQN+H   K   FLS S    NTLL+KPS
Sbjct: 1   MSLAPSRYPALYSSSPLPTSSVQAKQIPLLFSQNTHFLSKNYSFLSTSTAFSNTLLLKPS 60

Query: 57  VFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE-------QPYGLKFAKGRDGGTYI 109
             + KASETE+Q S  AESGS  + E   E E + E       QPYG+KFAKGRDG TYI
Sbjct: 61  NSILKASETESQTSKSAESGSGGEGEGEGEGEEKYEEYEVEIEQPYGIKFAKGRDGSTYI 120

Query: 110 DAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169
           DAIAPGGSADK G F VGDKV+ATSAVFGTEIWPAAEYGRTMYTIRQR+GPL MKMQKRY
Sbjct: 121 DAIAPGGSADKNGKFSVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLFMKMQKRY 180

Query: 170 GKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTG 229
           G M+ TGEL+EKEIIRAERNSGVISNRVREIQMQNY++KKEQKE+RE+DLREGLQLY+  
Sbjct: 181 GNMDYTGELTEKEIIRAERNSGVISNRVREIQMQNYLRKKEQKEQREKDLREGLQLYKNA 240

Query: 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
           KYE A EKFES+LGSKP P E++VASYNVACCYSKLNQ++AGLSALEDA+ AG+EDFK I
Sbjct: 241 KYEEALEKFESMLGSKPDPTEAAVASYNVACCYSKLNQLQAGLSALEDAMKAGFEDFKRI 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435790|ref|XP_002285744.1| PREDICTED: uncharacterized protein LOC100241562 [Vitis vinifera]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/298 (75%), Positives = 241/298 (80%), Gaps = 23/298 (7%)

Query: 1   MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCS---------CNTL 51
           MSLAPSSYASLYS PPLPRT        Q+S       C L  S  S         CNT 
Sbjct: 1   MSLAPSSYASLYSSPPLPRT----VPMRQSSF------CKLPCSNHSSIPTGLISFCNTH 50

Query: 52  LVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDA 111
           LVKPS+ V +ASETE    P   S SE +EEKYEEYEVE+ QPYGLKFAKGRDGGTYIDA
Sbjct: 51  LVKPSILVVRASETE----PSQTSKSESEEEKYEEYEVELVQPYGLKFAKGRDGGTYIDA 106

Query: 112 IAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK 171
           IAPGGSADKT MF VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQKRYGK
Sbjct: 107 IAPGGSADKTEMFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQKRYGK 166

Query: 172 MEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKY 231
           ++ TGEL+EKEIIRAERNSGVISNRVREIQMQNY KK EQKERR +DLREGLQLYR+ KY
Sbjct: 167 VDNTGELTEKEIIRAERNSGVISNRVREIQMQNYQKKMEQKERRAKDLREGLQLYRSAKY 226

Query: 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
           E A +KFESVLGSKP P E+S ASYNVACCYSKLNQ++AGLSALEDAL AGYEDFK I
Sbjct: 227 EEALDKFESVLGSKPDPNEASAASYNVACCYSKLNQIQAGLSALEDALEAGYEDFKTI 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564826|ref|XP_002523407.1| protein binding protein, putative [Ricinus communis] gi|223537357|gb|EEF38986.1| protein binding protein, putative [Ricinus communis]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/295 (73%), Positives = 251/295 (85%), Gaps = 8/295 (2%)

Query: 1   MSLAPSSYASLYSPPPLPRT---NQNPFLFSQNSHVWFKKNCFLSASGCSCNTL-LVKPS 56
           MSLAPSSYASLY+ PPLPRT    QNP +FSQN + +F KNC    +  S ++  L+KPS
Sbjct: 1   MSLAPSSYASLYTSPPLPRTITIKQNPLIFSQN-NPFFSKNCSFFTTSTSFSSTHLLKPS 59

Query: 57  VFVAKASETEAQASPEAESGS--EEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAP 114
               KASETE++AS ++ESGS   E EE+YEEYEVE+ QPYG+KFAKGRDG TYIDAIAP
Sbjct: 60  NLTVKASETESKAS-KSESGSTEGEGEEQYEEYEVELLQPYGIKFAKGRDGATYIDAIAP 118

Query: 115 GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQ 174
           GG+ADKTGMF VGDKV+ATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMK+QKRYGK + 
Sbjct: 119 GGAADKTGMFTVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKLQKRYGKTDY 178

Query: 175 TGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVA 234
            GE++EKEIIRAERNSG IS+RVREIQMQNY++KKEQK +RE+DLR+GL LY+  KYE A
Sbjct: 179 AGEMTEKEIIRAERNSGFISDRVREIQMQNYLRKKEQKAQREKDLRDGLILYKNAKYEEA 238

Query: 235 REKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
            E+FESVLGSKP P E+SVASYNVACCYSKLNQ+KAGLSAL+DA+ AG+EDFK I
Sbjct: 239 LERFESVLGSKPDPNEASVASYNVACCYSKLNQLKAGLSALKDAMEAGFEDFKRI 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519275|ref|XP_003629926.1| hypothetical protein MTR_8g088420 [Medicago truncatula] gi|217073920|gb|ACJ85320.1| unknown [Medicago truncatula] gi|355523948|gb|AET04402.1| hypothetical protein MTR_8g088420 [Medicago truncatula] gi|388505444|gb|AFK40788.1| unknown [Medicago truncatula]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/297 (67%), Positives = 233/297 (78%), Gaps = 14/297 (4%)

Query: 1   MSLAPSS-----YASLYSPPPLPRTN--QNPFLFSQNSHVWFKKNCFLSASGCSCNTLLV 53
           MSL+ S+     Y +L  P    + N  QNP  F  N+ ++  KN   S      NTLL 
Sbjct: 1   MSLSMSTTTSGHYTALSLPTRTTQINSKQNPTYFFPNTKLFSSKNHSFS------NTLLS 54

Query: 54  KPSVFVAKAS-ETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAI 112
           KP ++V KAS E  + AS E     E ++E YEEYEVEI+QPYG+KF KGRDGGTYIDAI
Sbjct: 55  KPFLYVVKASSEVGSDASKEDSEKGEGEKEPYEEYEVEIDQPYGIKFVKGRDGGTYIDAI 114

Query: 113 APGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM 172
           APGGSADK G+F VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLM+MQKRYGK+
Sbjct: 115 APGGSADKAGVFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMRMQKRYGKI 174

Query: 173 EQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYE 232
           E  G+L+EKEIIRAERNSGV+SN++REIQMQNY++KKE KE RE+DLREGL LYR  KYE
Sbjct: 175 ETGGDLTEKEIIRAERNSGVVSNKLREIQMQNYLRKKEVKEGRERDLREGLLLYRNAKYE 234

Query: 233 VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
            A EKFESVLGSKP P+E++VASYNVACCYSKLNQ++A LS LE+AL +G+EDFK I
Sbjct: 235 EALEKFESVLGSKPEPDEAAVASYNVACCYSKLNQIQAALSTLEEALNSGFEDFKRI 291

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847910|ref|XP_002891836.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297337678|gb|EFH68095.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/271 (71%), Positives = 221/271 (81%), Gaps = 1/271 (0%)

Query: 19  RTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSE 78
           +T QNP L +Q+S +  K     S S   CNT + K     +KASETE+ A  E      
Sbjct: 22  QTKQNPSLITQSSFISAKSLFLSSNSNSLCNTHVAKRRNLASKASETESTAKTEGGG-EG 80

Query: 79  EQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138
           E EEKYE YEVE+EQPYGLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVFG
Sbjct: 81  EAEEKYETYEVEVEQPYGLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVFG 140

Query: 139 TEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVR 198
           TEIWPAAEYGRTMYTIRQR+GPLLM+M+KR GK E  GEL+EKEIIRAERN+G IS+R+R
Sbjct: 141 TEIWPAAEYGRTMYTIRQRIGPLLMQMEKRNGKAEDAGELTEKEIIRAERNAGYISSRLR 200

Query: 199 EIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNV 258
           EIQMQNY++KKEQK +RE+DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYNV
Sbjct: 201 EIQMQNYLRKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYNV 260

Query: 259 ACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
           ACCYSKLNQV+AGLSALE+AL +GYEDFK I
Sbjct: 261 ACCYSKLNQVQAGLSALEEALKSGYEDFKRI 291

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463844|ref|XP_004149641.1| PREDICTED: uncharacterized protein LOC101217229 [Cucumis sativus] gi|449522778|ref|XP_004168403.1| PREDICTED: uncharacterized LOC101217229 [Cucumis sativus]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/294 (65%), Positives = 230/294 (78%), Gaps = 9/294 (3%)

Query: 1   MSLAPSSYASLY-----SPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKP 55
           MSLAP    S +      PP    ++ + F+    SH    K   L  S     +  +K 
Sbjct: 5   MSLAPPYLYSSHLLPKICPPNHSSSSSSSFILCSQSHSH-PKLSHLPFSTSFSTSHSLKH 63

Query: 56  SVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPG 115
           S F+ +AS+TE++   +++   +  ++ YEEYEVE+EQPYGLKFAKGRDGGTYIDAIAPG
Sbjct: 64  SPFILRASDTESKTDTDSD---DPNQQPYEEYEVELEQPYGLKFAKGRDGGTYIDAIAPG 120

Query: 116 GSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQT 175
           G ADKTG+F VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQKRYGK +  
Sbjct: 121 GFADKTGLFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQKRYGKTDSF 180

Query: 176 GELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAR 235
           GEL+EKEIIRAERNSGV+SN+VREIQ+QN ++ KEQK RRE DLR+GL+LY+  KYE A 
Sbjct: 181 GELTEKEIIRAERNSGVVSNKVREIQLQNALRMKEQKARRENDLRQGLRLYKNAKYEEAL 240

Query: 236 EKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
           EKFESVLGSKPTP+E+SVASYNVACCYS+LNQ+KAGLSALEDAL AG+EDFK +
Sbjct: 241 EKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRV 294

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519277|ref|XP_003629927.1| hypothetical protein MTR_8g088420 [Medicago truncatula] gi|355523949|gb|AET04403.1| hypothetical protein MTR_8g088420 [Medicago truncatula]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/297 (66%), Positives = 230/297 (77%), Gaps = 17/297 (5%)

Query: 1   MSLAPSS-----YASLYSPPPLPRTN--QNPFLFSQNSHVWFKKNCFLSASGCSCNTLLV 53
           MSL+ S+     Y +L  P    + N  QNP  F  N+ ++  KN   S      NTLL 
Sbjct: 1   MSLSMSTTTSGHYTALSLPTRTTQINSKQNPTYFFPNTKLFSSKNHSFS------NTLLS 54

Query: 54  KPSVFVAKAS-ETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAI 112
           KP ++V KAS E  + AS E     E ++E YEEYEVEI+QPYG+KF KGRDGGTYIDAI
Sbjct: 55  KPFLYVVKASSEVGSDASKEDSEKGEGEKEPYEEYEVEIDQPYGIKFVKGRDGGTYIDAI 114

Query: 113 APGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM 172
           APGGSADK G+F VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLM+MQKRY   
Sbjct: 115 APGGSADKAGVFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMRMQKRY--- 171

Query: 173 EQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYE 232
           E  G+L+EKEIIRAERNSGV+SN++REIQMQNY++KKE KE RE+DLREGL LYR  KYE
Sbjct: 172 ETGGDLTEKEIIRAERNSGVVSNKLREIQMQNYLRKKEVKEGRERDLREGLLLYRNAKYE 231

Query: 233 VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
            A EKFESVLGSKP P+E++VASYNVACCYSKLNQ++A LS LE+AL +G+EDFK I
Sbjct: 232 EALEKFESVLGSKPEPDEAAVASYNVACCYSKLNQIQAALSTLEEALNSGFEDFKRI 288

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789082|emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/252 (79%), Positives = 214/252 (84%), Gaps = 14/252 (5%)

Query: 48   CNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGT 107
            CNT LVKPS+ V +ASETE    P   S SE +EEKYEEYEVE+ QPYGLKFAKGRDGGT
Sbjct: 759  CNTHLVKPSILVVRASETE----PSQTSKSESEEEKYEEYEVELVQPYGLKFAKGRDGGT 814

Query: 108  YIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167
            YIDAIAPGGSADKT MF VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQK
Sbjct: 815  YIDAIAPGGSADKTEMFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQK 874

Query: 168  RYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLY- 226
            RYGK++ TGEL+EKEIIRAERNSGVISNRVREIQMQNY KK EQKERR +DLREGLQL  
Sbjct: 875  RYGKVDNTGELTEKEIIRAERNSGVISNRVREIQMQNYQKKMEQKERRAKDLREGLQLLQ 934

Query: 227  ---------RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277
                     R+ KYE A +KFESVLGSKP P E+S ASYNVACCYSKLNQ++AGLSALED
Sbjct: 935  YCFFFDYNKRSAKYEEALDKFESVLGSKPDPNEASAASYNVACCYSKLNQIQAGLSALED 994

Query: 278  ALLAGYEDFKVI 289
            AL AGYEDFK I
Sbjct: 995  ALEAGYEDFKTI 1006

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405391|ref|NP_564691.1| ZKT protein containing PDZ, K-box and a TPR region [Arabidopsis thaliana] gi|14532604|gb|AAK64030.1| unknown protein [Arabidopsis thaliana] gi|19310719|gb|AAL85090.1| unknown protein [Arabidopsis thaliana] gi|65329373|gb|AAY42135.1| GAN [Arabidopsis thaliana] gi|66766206|dbj|BAD99102.1| hypothetical protein [Arabidopsis thaliana] gi|332195129|gb|AEE33250.1| ZKT protein containing PDZ, K-box and a TPR region [Arabidopsis thaliana]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/272 (72%), Positives = 228/272 (83%), Gaps = 3/272 (1%)

Query: 19  RTNQNPFLFSQNSHVWFKKNCFLSASGCS-CNTLLVKPSVFVAKASETEAQASPEAESGS 77
           +T QNP L +Q+S +   K+ FLS++  S CNT + K      KASETE+ A  EA    
Sbjct: 22  QTKQNPSLITQSSFIS-AKSLFLSSNSASLCNTHVAKRRNLALKASETESSAKAEAGG-D 79

Query: 78  EEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
            E+EEKYE YE+E+EQPYGLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVF
Sbjct: 80  GEEEEKYETYEIEVEQPYGLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVF 139

Query: 138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV 197
           GTEIWPAAEYGRTMYTIRQR+GPLLM+M+KR GK E TGEL+EKEIIRAERN+G IS+R+
Sbjct: 140 GTEIWPAAEYGRTMYTIRQRIGPLLMQMEKRNGKAEDTGELTEKEIIRAERNAGYISSRL 199

Query: 198 REIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257
           REIQMQNY+KKKEQK +RE+DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYN
Sbjct: 200 REIQMQNYLKKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYN 259

Query: 258 VACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
           VACCYSKLNQV+AGLSALE+AL +GYEDFK I
Sbjct: 260 VACCYSKLNQVQAGLSALEEALKSGYEDFKRI 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595827|gb|AAM66135.1| unknown [Arabidopsis thaliana]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 197/272 (72%), Positives = 227/272 (83%), Gaps = 3/272 (1%)

Query: 19  RTNQNPFLFSQNSHVWFKKNCFLSASGCS-CNTLLVKPSVFVAKASETEAQASPEAESGS 77
           +T QNP L +Q+S +   K+ FLS++  S CNT + K      KASETE+ A  EA    
Sbjct: 22  QTKQNPSLITQSSFIS-AKSLFLSSNSASLCNTHVAKRRNLALKASETESSAKAEAGG-D 79

Query: 78  EEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
            E+EEKYE YE+E+EQPYGLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVF
Sbjct: 80  GEEEEKYETYEIEVEQPYGLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVF 139

Query: 138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV 197
           GTEIWPAAEYGRTMYTIRQR+ PLLM+M+KR GK E TGEL+EKEIIRAERN+G IS+R+
Sbjct: 140 GTEIWPAAEYGRTMYTIRQRICPLLMQMEKRNGKAEDTGELTEKEIIRAERNAGYISSRL 199

Query: 198 REIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257
           REIQMQNY+KKKEQK +RE+DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYN
Sbjct: 200 REIQMQNYLKKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYN 259

Query: 258 VACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
           VACCYSKLNQV+AGLSALE+AL +GYEDFK I
Sbjct: 260 VACCYSKLNQVQAGLSALEEALKSGYEDFKRI 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
TAIR|locus:2193844	335	ZKT "protein containing PDZ do	0.921	0.802	0.636	8.2e-83
TAIR|locus:2167150	271	ENH1 "enhancer of sos3-1" [Ara	0.208	0.225	0.387	0.00022

TAIR|locus:2193844 ZKT "protein containing PDZ domain, a K-box domain, and a TPR region" [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 173/272 (63%), Positives = 197/272 (72%)

Query:    19 RTNQNPFLFSQNSHVWFKKNCFLSASGCS-CNTLLVKPSVFVAKASETXXXXXXXXXXXX 77
             +T QNP L +Q+S +   K+ FLS++  S CNT + K      KASET            
Sbjct:    22 QTKQNPSLITQSSFI-SAKSLFLSSNSASLCNTHVAKRRNLALKASETESSAKAEAGGDG 80

Query:    78 XXXXXXXXXXXXXXXXXXGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
                               GLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVF
Sbjct:    81 EEEEKYETYEIEVEQPY-GLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVF 139

Query:   138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV 197
             GTEIWPAAEYGRTMYTIRQR+GPLLM+M+KR GK E TGEL+EKEIIRAERN+G IS+R+
Sbjct:   140 GTEIWPAAEYGRTMYTIRQRIGPLLMQMEKRNGKAEDTGELTEKEIIRAERNAGYISSRL 199

Query:   198 REIQMQNYMXXXXXXXXXXXDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257
             REIQMQNY+           DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYN
Sbjct:   200 REIQMQNYLKKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYN 259

Query:   258 VACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289
             VACCYSKLNQV+AGLSALE+AL +GYEDFK I
Sbjct:   260 VACCYSKLNQVQAGLSALEEALKSGYEDFKRI 291

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TAIR|locus:2167150 ENH1 "enhancer of sos3-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00022, P = 0.00022
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query:    96 GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155
             GL   + + GG  I  +  GG+A K G+ + GD+V+ TS+ FG E+WPA + G T   I+
Sbjct:    95 GLTLGQKQGGGVVITGVDGGGNAAKAGL-KSGDQVVYTSSFFGDELWPADKLGFTKTAIQ 153

Query:   156 QR 157
              +
Sbjct:   154 AK 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      292       234   0.00087  113 3  11 22  0.43    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  167 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.89u 0.10s 17.99t   Elapsed:  00:00:00
  Total cpu time:  17.89u 0.10s 17.99t   Elapsed:  00:00:00
  Start:  Mon May 20 16:46:52 2013   End:  Mon May 20 16:46:52 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0046872 "metal ion binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024835001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (329 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024719001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (396 aa)				•			•		0.607
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)				•			•		0.590
	GSVIVG00037209001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (233 aa)				•			•		0.567
	GSVIVG00017365001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (208 aa)				•			•		0.517
	GSVIVG00027006001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (440 aa)				•			•		0.505
	GSVIVG00025354001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (213 aa)				•			•		0.493
	GSVIVG00014438001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (180 aa)				•			•		0.487
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.472
	GSVIVG00015393001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (270 aa)				•					0.470
	GSVIVG00003851001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (518 aa)				•					0.466

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
PLN03098	453	PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisiona	2e-05
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	1e-04
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	4e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-04
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	9e-04

>gnl|CDD|215573 PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279
           GL L+  G+ + A  +FE+ L   P P+E+  A YN ACC++   + K     L  AL
Sbjct: 82  GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139

Length = 453

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 86  EYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              V +        G     G+D  GG ++  + PGG A++ G+ +VGD++L 
Sbjct: 1   VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGL-RVGDRILE 52

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 85  EEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E   VE+E      G     G+D  GG  + ++ PG  A K G+ +VGD +L 
Sbjct: 1   EPRLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGL-RVGDVILE 52

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278
           L       R G Y+ A    E+ L   P    ++ A   +     +  ++    + L  A
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYP---LAAEALLLLGEALLRQGRLAEAAALLRAA 57

Query: 279 L 279
           L
Sbjct: 58  L 58

Length = 65

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 94  PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             G     G +GG  + ++ PG  A++ G  Q GD +LA
Sbjct: 2   GLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILA 39

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.31
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.19
KOG0553	304	consensus TPR repeat-containing protein [General f	99.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.93
PRK15359	144	type III secretion system chaperone protein SscB;	98.92
KOG4234	271	consensus TPR repeat-containing protein [General f	98.83
PRK11189	296	lipoprotein NlpI; Provisional	98.82
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.77
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.74
PF13371	73	TPR_9: Tetratricopeptide repeat	98.7
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.67
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.62
PRK15359	144	type III secretion system chaperone protein SscB;	98.59
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.59
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.58
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.57
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.55
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.52
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.5
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.45
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.43
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.43
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.42
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.42
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.4
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.38
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.35
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.35
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.34
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.33
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.27
KOG1125	579	consensus TPR repeat-containing protein [General f	98.27
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.26
KOG0553	304	consensus TPR repeat-containing protein [General f	98.26
PRK11189	296	lipoprotein NlpI; Provisional	98.23
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.16
PRK12370	553	invasion protein regulator; Provisional	98.13
KOG4555	175	consensus TPR repeat-containing protein [Function	98.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.07
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.06
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.04
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.03
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.03
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.01
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.0
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.99
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.99
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.93
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.91
PLN02789	320	farnesyltranstransferase	97.9
PRK12370	553	invasion protein regulator; Provisional	97.88
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.85
PRK10803	263	tol-pal system protein YbgF; Provisional	97.85
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.85
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	97.82
KOG1125	579	consensus TPR repeat-containing protein [General f	97.81
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	97.8
PF13431	34	TPR_17: Tetratricopeptide repeat	97.79
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.77
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.76
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.73
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.73
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.73
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.72
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.71
KOG3571	626	consensus Dishevelled 3 and related proteins [Gene	97.71
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.65
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.64
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.63
PF12688	120	TPR_5: Tetratrico peptide repeat	97.63
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.61
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.59
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.59
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.58
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.58
PF13512	142	TPR_18: Tetratricopeptide repeat	97.57
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.57
KOG1126	638	consensus DNA-binding cell division cycle control	97.56
PF12688	120	TPR_5: Tetratrico peptide repeat	97.52
KOG1126	638	consensus DNA-binding cell division cycle control	97.51
KOG4234	271	consensus TPR repeat-containing protein [General f	97.5
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.48
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.48
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.47
PLN02789	320	farnesyltranstransferase	97.45
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.44
PRK10803	263	tol-pal system protein YbgF; Provisional	97.41
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.38
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.38
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.36
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.36
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	97.31
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.31
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.25
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.19
PRK15331	165	chaperone protein SicA; Provisional	97.14
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.13
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.09
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.09
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.05
PF13512	142	TPR_18: Tetratricopeptide repeat	97.02
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.97
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.97
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	96.95
PRK15331	165	chaperone protein SicA; Provisional	96.9
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	96.89
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	96.86
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.86
PF13428	44	TPR_14: Tetratricopeptide repeat	96.85
KOG2076	895	consensus RNA polymerase III transcription factor	96.83
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.83
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.82
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.78
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.77
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.77
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.73
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	96.72
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.64
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.61
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.61
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.6
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.47
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.43
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.34
PRK11906	458	transcriptional regulator; Provisional	96.29
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.29
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.28
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.27
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.27
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.23
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.16
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.15
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	96.13
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.12
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.11
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.09
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.09
PRK11186	667	carboxy-terminal protease; Provisional	96.08
KOG1128	777	consensus Uncharacterized conserved protein, conta	96.04
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.03
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	95.89
KOG1129	478	consensus TPR repeat-containing protein [General f	95.88
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.83
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.83
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.77
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.76
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.74
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.7
PRK14574	822	hmsH outer membrane protein; Provisional	95.69
KOG2076	895	consensus RNA polymerase III transcription factor	95.64
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	95.63
KOG2003	840	consensus TPR repeat-containing protein [General f	95.63
PF13428	44	TPR_14: Tetratricopeptide repeat	95.57
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	95.51
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.47
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	95.46
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.43
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	95.42
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.39
PLN00049	389	carboxyl-terminal processing protease; Provisional	95.37
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.34
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.29
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.26
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.23
KOG2003	840	consensus TPR repeat-containing protein [General f	95.22
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	95.18
KOG3550	207	consensus Receptor targeting protein Lin-7 [Extrac	95.17
PRK14574	822	hmsH outer membrane protein; Provisional	95.16
KOG4555	175	consensus TPR repeat-containing protein [Function	95.12
PF13371	73	TPR_9: Tetratricopeptide repeat	95.11
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.01
PRK10139	455	serine endoprotease; Provisional	94.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.88
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.71
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	94.7
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	94.68
PRK10898	353	serine endoprotease; Provisional	94.64
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.55
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.52
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.43
PRK10942	473	serine endoprotease; Provisional	94.42
PRK10139	455	serine endoprotease; Provisional	94.39
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	94.38
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.35
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	94.34
KOG3209	984	consensus WW domain-containing protein [General fu	94.33
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.31
KOG1892	1629	consensus Actin filament-binding protein Afadin [C	94.25
KOG3532	1051	consensus Predicted protein kinase [General functi	94.22
PRK10942	473	serine endoprotease; Provisional	94.08
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.92
KOG3060	289	consensus Uncharacterized conserved protein [Funct	93.85
PRK10779	449	zinc metallopeptidase RseP; Provisional	93.84
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	93.83
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.72
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.7
KOG3553	124	consensus Tax interaction protein TIP1 [Cell wall/	93.64
PRK14720	906	transcript cleavage factor/unknown domain fusion p	93.59
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.58
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.51
KOG4648	536	consensus Uncharacterized conserved protein, conta	93.48
KOG3580	1027	consensus Tight junction proteins [Signal transduc	93.42
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	93.18
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.12
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	93.08
COG3975	558	Predicted protease with the C-terminal PDZ domain	93.03
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	92.88
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.88
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	92.86
PRK10941	269	hypothetical protein; Provisional	92.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	92.76
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	92.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	92.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	92.48
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	92.47
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.42
PLN03218	1060	maturation of RBCL 1; Provisional	92.36
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.25
PLN03218	1060	maturation of RBCL 1; Provisional	92.02
PRK04841	903	transcriptional regulator MalT; Provisional	92.0
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	91.78
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	91.55
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.41
KOG2796	366	consensus Uncharacterized conserved protein [Funct	91.25
KOG3364	149	consensus Membrane protein involved in organellar	90.78
PF13431	34	TPR_17: Tetratricopeptide repeat	90.51
KOG3785	557	consensus Uncharacterized conserved protein [Funct	90.4
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	90.39
KOG1129	478	consensus TPR repeat-containing protein [General f	90.33
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	90.19
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.11
PRK10779	449	zinc metallopeptidase RseP; Provisional	89.97
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	89.94
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	89.88
KOG3606	358	consensus Cell polarity protein PAR6 [Signal trans	89.87
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	89.7
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	89.47
KOG3209	984	consensus WW domain-containing protein [General fu	89.37
KOG2376	652	consensus Signal recognition particle, subunit Srp	89.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.98
KOG0495	913	consensus HAT repeat protein [RNA processing and m	88.76
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.67
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	88.34
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	88.08
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.98
PRK04841	903	transcriptional regulator MalT; Provisional	87.93
KOG3605	829	consensus Beta amyloid precursor-binding protein [	87.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	87.4
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	86.71
KOG3580	1027	consensus Tight junction proteins [Signal transduc	86.6
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	86.47
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.07
KOG3129	231	consensus 26S proteasome regulatory complex, subun	86.04
PLN03077	857	Protein ECB2; Provisional	86.0
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	85.78
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	84.71
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	84.35
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	84.23
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	84.18
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	84.08
PLN03077	857	Protein ECB2; Provisional	83.75
COG3118	304	Thioredoxin domain-containing protein [Posttransla	83.32
COG4105	254	ComL DNA uptake lipoprotein [General function pred	82.77
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.74
KOG4507	886	consensus Uncharacterized conserved protein, conta	82.61
COG4700	251	Uncharacterized protein conserved in bacteria cont	82.25
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	82.14
KOG2471	696	consensus TPR repeat-containing protein [General f	82.1
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.87
KOG3938	334	consensus RGS-GAIP interacting protein GIPC, conta	81.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	81.45
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	81.26
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.22
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.97
COG2912	269	Uncharacterized conserved protein [Function unknow	80.56

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.31  E-value=6e-12  Score=124.99  Aligned_cols=75  Identities=32%  Similarity=0.505  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhhh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIY  290 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~Ir  290 (292)
                      ..++|+|++|+++|+|++|+.+|++||+++|++.+...+|||+||||.++|++++|+++|++||+++...|+.|+
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~  150 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTIL  150 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHH
Confidence            456799999999999999999999999999996555568999999999999999999999999999777776554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.19  E-value=6.1e-11  Score=86.25  Aligned_cols=65  Identities=29%  Similarity=0.419  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-QVKAGLSALEDALLAG  282 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg-q~eeALe~LekAIelG  282 (292)
                      +..++++|..++..|+|++|+..|+++|+++|++   ..+|+|+|.||..+| ++++|+.++++||++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            3456799999999999999999999999999973   568999999999999 7999999999999975

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=3.7e-10  Score=107.24  Aligned_cols=70  Identities=29%  Similarity=0.345  Sum_probs=63.4

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       212 k~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      +..+++..++|+.+++.++|++||.+|++||+++|++   ++.|.|+|.+|++||+++.|+++|+.||.+...
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~  147 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH  147 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhcchHHHHHHHHHHHhcChH
Confidence            3445667799999999999999999999999999985   677999999999999999999999999999755

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.93  E-value=5.9e-09  Score=75.21  Aligned_cols=64  Identities=23%  Similarity=0.294  Sum_probs=57.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      +.+|..+++.|+|++|+..|+++++.+|++   ..+|+.+|.|+..+|++++|+..+++++++..++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDN---PEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            468999999999999999999999999973   5689999999999999999999999999987654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.92  E-value=4.1e-09  Score=88.84  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             HHhhccccchhhHHHHHHHhhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      .+++..|.+..++.     .|.+.....+...+ ++++|..+...|+|++|+..|+++++++|++   ..+|+|+|.||.
T Consensus        32 ~~~~~~g~~~~A~~-----~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---~~a~~~lg~~l~  103 (144)
T PRK15359         32 YASWQEGDYSRAVI-----DFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH---PEPVYQTGVCLK  103 (144)
T ss_pred             HHHHHcCCHHHHHH-----HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHH
Confidence            34445555554433     44444444444434 4699999999999999999999999999974   457999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCccChh
Q 022783          264 KLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .+|++++|+.+|++||++..++..
T Consensus       104 ~~g~~~eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359        104 MMGEPGLAREAFQTAIKMSYADAS  127 (144)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999988643

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.83  E-value=1.2e-08  Score=93.58  Aligned_cols=70  Identities=27%  Similarity=0.391  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc--cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP--EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~--~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..++..+|+.+|+.|+|++|...|..||+++|.-  ...+.+|.|+|.|+.+++.++.||++|.+||++|..
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt  166 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT  166 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence            3456689999999999999999999999999963  345789999999999999999999999999999974

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.82  E-value=2e-08  Score=93.69  Aligned_cols=106  Identities=18%  Similarity=0.190  Sum_probs=86.5

Q ss_pred             ccHHHHHHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHH
Q 022783          178 LSEKEIIRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA  254 (292)
Q Consensus       178 ~~e~~~~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a  254 (292)
                      ++..+.-...++.|.+...+....++  .|.+...+.+.. ..++++|..+...|+|++|++.|+++|+++|++   ..+
T Consensus        58 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a  134 (296)
T PRK11189         58 LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYA  134 (296)
T ss_pred             CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHH
Confidence            33334456677888887777776665  666666665554 445699999999999999999999999999974   457


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          255 SYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       255 ~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      |+|+|.+|..+|++++|++++++|+++..+|.
T Consensus       135 ~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        135 YLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999999988764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.77  E-value=2.5e-08  Score=74.28  Aligned_cols=65  Identities=18%  Similarity=0.244  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGS----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALel----dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      -+.+.|..++..|+|++|++.|+++|++    .++..+...+++|+|.||..+|++++|++.+++|+++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3459999999999999999999999954    3333355788999999999999999999999999986

...

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=4.3e-08  Score=98.92  Aligned_cols=91  Identities=16%  Similarity=0.290  Sum_probs=72.9

Q ss_pred             ccchhhHHHHHHH--hhHHHHHhhHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC
Q 022783          191 GVISNRVREIQMQ--NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (292)
Q Consensus       191 GvI~~~l~eiqea--~Y~kkk~lk~~-~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq  267 (292)
                      +++.+++++.++.  .+....-.... ..+..+.|+.+|+.|+|.+|+..|++||..+|++   +.+|.|+|.||.++++
T Consensus       331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D---a~lYsNRAac~~kL~~  407 (539)
T KOG0548|consen  331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED---ARLYSNRAACYLKLGE  407 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHhh
Confidence            5667777777664  23222222222 3555688999999999999999999999999973   5689999999999999


Q ss_pred             HHHHHHHHHHHHHhCcc
Q 022783          268 VKAGLSALEDALLAGYE  284 (292)
Q Consensus       268 ~eeALe~LekAIelG~~  284 (292)
                      +..||.+|+++|++...
T Consensus       408 ~~~aL~Da~~~ieL~p~  424 (539)
T KOG0548|consen  408 YPEALKDAKKCIELDPN  424 (539)
T ss_pred             HHHHHHHHHHHHhcCch
Confidence            99999999999999654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.70  E-value=6e-08  Score=70.99  Aligned_cols=62  Identities=26%  Similarity=0.251  Sum_probs=56.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..++.+.++|++|++++++++.++|+.   ..+|+++|.||..+|++++|+.+|+++++.++++-
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            467899999999999999999999973   46799999999999999999999999999998753

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=5.2e-08  Score=96.38  Aligned_cols=93  Identities=17%  Similarity=0.247  Sum_probs=77.1

Q ss_pred             hhccccchhhHHHHHH------------HhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc-hhH
Q 022783          187 ERNSGVISNRVREIQM------------QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSV  253 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqe------------a~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d-~a~  253 (292)
                      +.=.+++.++.+|+++            ..|...+++++.+    +.|+.+|+.|+|.+|.++|..||.++|++.+ .+.
T Consensus       213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k----~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak  288 (486)
T KOG0550|consen  213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK----ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK  288 (486)
T ss_pred             cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH----hhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence            3345677788888887            2444455555555    9999999999999999999999999998644 367


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          254 ASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      +|+|+|.++.++|+..+||.+|+.|+++.-
T Consensus       289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  289 LYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             HHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence            899999999999999999999999999863

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.62  E-value=1.1e-07  Score=72.05  Aligned_cols=74  Identities=23%  Similarity=0.597  Sum_probs=59.9

Q ss_pred             EEEecC----CceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           88 EVEIEQ----PYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        88 ~v~l~K----PlGl~~~~~~~G---~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      +|+|.|    |+|+.+..+.+.   ++||.+|.|+|.|+++| |++||+|+.+..    .-......-+++..|+..+++
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg----~~v~~~~~~~~~~~l~~~~~~   75 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEING----QSVRGMSHDEVVQLLKSASNP   75 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETT----EESTTSBHHHHHHHHHHSTSE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCC----EeCCCCCHHHHHHHHHCCCCc
Confidence            355555    999999998774   99999999999999999 999999999874    222233455788899988889


Q ss_pred             eEEEEe
Q 022783          161 LLMKMQ  166 (292)
Q Consensus       161 v~l~l~  166 (292)
                      |.|+++
T Consensus        76 v~L~V~   81 (81)
T PF00595_consen   76 VTLTVQ   81 (81)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            998875

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.59  E-value=3.1e-07  Score=77.41  Aligned_cols=83  Identities=14%  Similarity=0.139  Sum_probs=69.4

Q ss_pred             HHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783          200 IQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       200 iqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI  279 (292)
                      |.+..|.+...+.+.  ..+..|..+++.|+|++|+..|.+++.++|.+   ..+|+++|.++..+|++++|+.++++|+
T Consensus        11 ~~~~~~~~al~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al   85 (144)
T PRK15359         11 IPEDILKQLLSVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHAL   85 (144)
T ss_pred             CHHHHHHHHHHcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344555555555443  36688999999999999999999999999974   5679999999999999999999999999


Q ss_pred             HhCccChh
Q 022783          280 LAGYEDFK  287 (292)
Q Consensus       280 elG~~Df~  287 (292)
                      ++..++..
T Consensus        86 ~l~p~~~~   93 (144)
T PRK15359         86 MLDASHPE   93 (144)
T ss_pred             hcCCCCcH
Confidence            99887643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.59  E-value=2.4e-08  Score=102.90  Aligned_cols=108  Identities=20%  Similarity=0.258  Sum_probs=90.8

Q ss_pred             ccccccHHHH-H-HHh----------hccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHH
Q 022783          174 QTGELSEKEI-I-RAE----------RNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKF  238 (292)
Q Consensus       174 ~~~~~~e~~~-~-~a~----------rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~f  238 (292)
                      ..|.|.|+-. | ||.          -|.|-+-+...+++++  +|+++-++++.- +.++|+|+.|.+.+.|++|+.+|
T Consensus       196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y  275 (966)
T KOG4626|consen  196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY  275 (966)
T ss_pred             hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence            4466777642 3 544          3888888999999885  888888777775 55579999999999999999999


Q ss_pred             HHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          239 ESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       239 ekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+||.+.|+   .+.+|-|+||+|..+|+++-||.++++||++.+.
T Consensus       276 ~rAl~lrpn---~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~  318 (966)
T KOG4626|consen  276 LRALNLRPN---HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN  318 (966)
T ss_pred             HHHHhcCCc---chhhccceEEEEeccccHHHHHHHHHHHHhcCCC
Confidence            999999997   4778999999999999999999999999998754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.58  E-value=3.2e-07  Score=71.07  Aligned_cols=69  Identities=17%  Similarity=0.227  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ..+..|..+++.|+|++|+..|++++...|+......+++++|-||..+|++++|+..++++++...++
T Consensus        41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            457899999999999999999999999999865556689999999999999999999999999997664

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=1.3e-07  Score=95.37  Aligned_cols=66  Identities=21%  Similarity=0.297  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      .+.++|+.+|+.|+|++||++|++||+++|+  + +.-|.|+|.||..+|+|++-+++|.+|+++..+-
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y  182 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--E-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDY  182 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--C-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH
Confidence            3459999999999999999999999999997  2 5669999999999999999999999999998653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.55  E-value=5.5e-07  Score=77.13  Aligned_cols=68  Identities=24%  Similarity=0.343  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      -.+++|..+...|+|++|+.+|++++++.|+..+...+|+|+|.+|.++|++++|+..+++|+++...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  104 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK  104 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            34688888888888888888888888777654344567888888888888888888888888887544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.52  E-value=5.4e-07  Score=91.45  Aligned_cols=95  Identities=19%  Similarity=0.137  Sum_probs=75.9

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      .++.+.|+..-..+.+..+  .|.+...+.+...-++++|..+.++|+|++|++.|++||+++|++   ..+|+++|.+|
T Consensus       128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~  204 (615)
T TIGR00990       128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY---SKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Confidence            4566777777666666665  555555555554445699999999999999999999999999974   56799999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhC
Q 022783          263 SKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG  282 (292)
                      ..+|++++|+.++..++.++
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~  224 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIID  224 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhC
Confidence            99999999999998887664

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.51  E-value=8e-07  Score=85.64  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=75.8

Q ss_pred             HHHhhccccchhhHHHHHHHhhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      -..+|..|++..++.     .|.+...+.+.... ++++|..+.+.|+|++|+..+++||.++|++   ..+|+++|.+|
T Consensus         9 a~~a~~~~~~~~Ai~-----~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---~~a~~~lg~~~   80 (356)
T PLN03088          9 AKEAFVDDDFALAVD-----LYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL---AKAYLRKGTAC   80 (356)
T ss_pred             HHHHHHcCCHHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHH
Confidence            345566666665543     45555555554433 4599999999999999999999999999974   56799999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCccCh
Q 022783          263 SKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+|++++|+.+|++|+++..++.
T Consensus        81 ~~lg~~~eA~~~~~~al~l~P~~~  104 (356)
T PLN03088         81 MKLEEYQTAKAALEKGASLAPGDS  104 (356)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999987753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.50  E-value=7.2e-07  Score=71.84  Aligned_cols=69  Identities=19%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ...++.|..+++.|+|++|+..|++++.++|++   ...||++|.||..+|++++|+..+++++++..++..
T Consensus        52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDD---PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            344699999999999999999999999999974   457999999999999999999999999999887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.45  E-value=3.9e-07  Score=94.14  Aligned_cols=105  Identities=21%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             ccccHHHH-H-HH----------hhccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 022783          176 GELSEKEI-I-RA----------ERNSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFES  240 (292)
Q Consensus       176 ~~~~e~~~-~-~a----------~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fek  240 (292)
                      |+.+|++. | ++          +-|.|+|..-...|.++  .|.++-+..+.--.+. |+|.+|.+.|++++||.+|..
T Consensus       334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke  413 (966)
T KOG4626|consen  334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE  413 (966)
T ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence            56677763 3 33          34777777777777775  4544444444333333 777777777777777777777


Q ss_pred             HHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          241 VLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       241 ALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ||.++|++   +.+|.|++..|..+|+.+.|+.++++||.+.+
T Consensus       414 alrI~P~f---Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nP  453 (966)
T KOG4626|consen  414 ALRIKPTF---ADALSNMGNTYKEMGDVSAAIQCYTRAIQINP  453 (966)
T ss_pred             HHhcCchH---HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence            77777764   44566666666666666666666666666653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.43  E-value=1.5e-06  Score=76.10  Aligned_cols=76  Identities=14%  Similarity=0.076  Sum_probs=62.9

Q ss_pred             hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .|...-+..... .-++++|..+...|+|++||..|.+|+.++|++   ..+++|.|.||..+|+.+.|.++++.||...
T Consensus        57 ~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         57 LFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---PQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            333333333333 334699999999999999999999999999974   4579999999999999999999999999887

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.43  E-value=1.5e-06  Score=73.87  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ...+++.|..+...|+|++|+..|.+++.+.|+..+...+|+|+|++|..+|++++|+..|++|+++-.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~  103 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP  103 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            345568999999999999999999999988776444456899999999999999999999999998743

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.42  E-value=1.4e-06  Score=70.04  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=65.9

Q ss_pred             HHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          206 MKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       206 ~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+.-.+.+.. ...+..|..+++.|+|++|+..|+++++++|++   ..+|+++|.||.++|++++|+..++++++.+.+
T Consensus         7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3333344433 335699999999999999999999999999974   567999999999999999999999999999877


Q ss_pred             Chh
Q 022783          285 DFK  287 (292)
Q Consensus       285 Df~  287 (292)
                      +..
T Consensus        84 ~~~   86 (135)
T TIGR02552        84 DPR   86 (135)
T ss_pred             ChH
Confidence            643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.42  E-value=1.5e-06  Score=60.84  Aligned_cols=64  Identities=33%  Similarity=0.429  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ..+..|..+...+++++|++.|++++...|..   ..+++++|.+|..+|++++|+..++++++...
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---AKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            44688888888899999999999999888863   24688999999999999999999988887653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.40  E-value=3.2e-07  Score=66.23  Aligned_cols=57  Identities=30%  Similarity=0.381  Sum_probs=51.3

Q ss_pred             HHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       225 L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      +++.|+|++|++.|++++..+|++   ..+++++|-||.++|++++|...|+++++...+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            568999999999999999999974   457999999999999999999999999998766

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.40  E-value=1.3e-06  Score=84.22  Aligned_cols=67  Identities=9%  Similarity=0.075  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      +++.+|..++..|+|++|++.|++||+++|++   ..+|+|+|.||.++|++++|+.+|++||++...+.
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~   70 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGNFTEAVADANKAIELDPSLA   70 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence            45688999999999999999999999999974   56799999999999999999999999999987643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.38  E-value=3.4e-06  Score=72.22  Aligned_cols=102  Identities=17%  Similarity=0.156  Sum_probs=76.7

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN  257 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~----~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN  257 (292)
                      ..++++.|.+.......+++  .|.+.....+.    ....+++|..+++.|+|++|+..|++++.++|+.   ..++++
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  111 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ---PSALNN  111 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHH
Confidence            44566667666666666665  33333322222    2345699999999999999999999999999973   567999


Q ss_pred             HHHHHHhcCC--------------HHHHHHHHHHHHHhCccChhh
Q 022783          258 VACCYSKLNQ--------------VKAGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       258 ~AccyakLgq--------------~eeALe~LekAIelG~~Df~~  288 (292)
                      ++.+|..+|+              +++|++.+++++.++.+++..
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~  156 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIE  156 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHH
Confidence            9999999998              688888899998888887643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.35  E-value=1.7e-06  Score=65.71  Aligned_cols=58  Identities=29%  Similarity=0.387  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA  278 (292)
                      -.+.+|..+++.|+|++|+..+++ ++.+|.+   ...+|-+|.||.++|++++|+++|++|
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---PDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            345799999999999999999999 8888763   346778899999999999999999986

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.35  E-value=2.6e-06  Score=59.53  Aligned_cols=66  Identities=32%  Similarity=0.427  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      .++.|..++..|+|++|+..|++++...|+.   ..+++++|.||..++++++|+..++++++....+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            4588999999999999999999999999974   36799999999999999999999999999876654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.34  E-value=2.7e-06  Score=86.44  Aligned_cols=66  Identities=20%  Similarity=0.225  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...++|+.+++.|+|++||+.|+++|+++|+    ...|+|+|.||.++|++++|+++|++||++..++.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~  194 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS  194 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Confidence            3458999999999999999999999999996    35799999999999999999999999999987654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.33  E-value=2.7e-06  Score=74.58  Aligned_cols=68  Identities=12%  Similarity=0.048  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ..+..|..++..|+|++|...|+-...++|.+   ...|||+|.|+-.+|+|++||+++.+|+.+..+|+.
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~  104 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ  104 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            44589999999999999999999999999985   456999999999999999999999999999987764

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.3e-06  Score=84.76  Aligned_cols=74  Identities=23%  Similarity=0.267  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeld-P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~  288 (292)
                      +..+.+.||.+|+.++|..|+++|+++|..+ ++..-.+++|.|+|.|+..+|+|..||.+|.+|+.+.....+.
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka  155 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA  155 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence            3444589999999999999999999999644 4333347899999999999999999999999999998765443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.28  E-value=5.7e-06  Score=64.00  Aligned_cols=68  Identities=16%  Similarity=0.187  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..+..|..+.+.|+|++|++.|++++..+|+......+++++|.+|...|++++|+..+++++....+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~   71 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK   71 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence            45799999999999999999999999999875444568999999999999999999999999987543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.27  E-value=3.5e-06  Score=74.95  Aligned_cols=98  Identities=11%  Similarity=0.025  Sum_probs=76.2

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhHHHH-HHHHHHH-HHcCC--HHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQD-LREGLQL-YRTGK--YEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~-~n~G~~L-~k~gd--YeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      .++.|.+....++...+  .|.+...+.+...+. .+.|.++ +..|+  +++|+..++++++.+|++   ..+++|+|.
T Consensus        76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---~~al~~LA~  152 (198)
T PRK10370         76 WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---VTALMLLAS  152 (198)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---hhHHHHHHH
Confidence            44556666666666665  666666666655443 5889876 67787  599999999999999974   457999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ++..+|++++|+.++++++++...+-+
T Consensus       153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        153 DAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999876543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=1.1e-06  Score=89.64  Aligned_cols=93  Identities=20%  Similarity=0.181  Sum_probs=79.6

Q ss_pred             ccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783          189 NSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (292)
Q Consensus       189 N~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL  265 (292)
                      ..|++....+++..+  .|..+...+++.+..+ .+|-+|....+++|||..|++||++.|.+   --++||+|.||..+
T Consensus       435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---VR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY---VRVRYNLGISCMNL  511 (579)
T ss_pred             hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---eeeehhhhhhhhhh
Confidence            457777778888886  7777777777777777 78999999999999999999999999984   33699999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcc
Q 022783          266 NQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       266 gq~eeALe~LekAIelG~~  284 (292)
                      |.|++|+++|-.||.+--.
T Consensus       512 G~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  512 GAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhHHHHHHHHHHHHHhhhc
Confidence            9999999999999987544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.26  E-value=1.4e-06  Score=85.41  Aligned_cols=62  Identities=23%  Similarity=0.287  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ..+.|+.||++|+|+|||+||.++|..+|.+   .+.|-|+|.+|.++..+..|-.+|+.||.+.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd  161 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---PVYHINRALAYLKQKSFAQAEEDCEAAIALD  161 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCC---ccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence            3488999999999999999999999999954   5679999999999999999999999999885

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=2.8e-06  Score=81.14  Aligned_cols=95  Identities=21%  Similarity=0.223  Sum_probs=80.8

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      +.+.|+=..+-+.++++  .|-++.++.+..--++ |++-+|.++|.|+.|++-.+.||.+||.   ++.+|--++.+|+
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---yskay~RLG~A~~  160 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---YSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---HHHHHHHHHHHHH
Confidence            44566655555555554  8888888877665666 9999999999999999999999999996   6889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCcc
Q 022783          264 KLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~  284 (292)
                      -+|++++|++.|++||++-++
T Consensus       161 ~~gk~~~A~~aykKaLeldP~  181 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPD  181 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCC
Confidence            999999999999999999766

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.23  E-value=7.2e-06  Score=76.59  Aligned_cols=67  Identities=16%  Similarity=0.199  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ..++++|..+...|++++|+..|+++|+++|++   ..+|+|+|.+|..+|++++|++++++|+++..++
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~  131 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY  131 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            446799999999999999999999999999974   5689999999999999999999999999998664

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.16  E-value=5.6e-06  Score=89.87  Aligned_cols=95  Identities=13%  Similarity=0.093  Sum_probs=67.8

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      .+|.|.+...+.+..++  .|.+...+.+..... .++|..+.+.|++++|++.|++|++++|++   ..+++|+|.+|.
T Consensus       612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~---~~a~~nLA~al~  688 (987)
T PRK09782        612 YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD---PALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence            34555555555555554  555555555544333 488888888888888888888888888863   456888888888


Q ss_pred             hcCCHHHHHHHHHHHHHhCcc
Q 022783          264 KLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~  284 (292)
                      .+|++++|+.+|++|+++-.+
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCC
Confidence            888888888888888887654

>PRK12370 invasion protein regulator; Provisional

Probab=98.13  E-value=1.3e-05  Score=81.13  Aligned_cols=80  Identities=16%  Similarity=0.093  Sum_probs=67.0

Q ss_pred             hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .+.+..++.++..+. ..+|..+...|+|++|+..|++||+++|++   ..+|+++|.+|..+|++++|+..+++|+++.
T Consensus       326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~  402 (553)
T PRK12370        326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD  402 (553)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            455555555544333 488999999999999999999999999984   4579999999999999999999999999998


Q ss_pred             ccCh
Q 022783          283 YEDF  286 (292)
Q Consensus       283 ~~Df  286 (292)
                      ..+.
T Consensus       403 P~~~  406 (553)
T PRK12370        403 PTRA  406 (553)
T ss_pred             CCCh
Confidence            8753

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.12  E-value=6e-06  Score=71.81  Aligned_cols=62  Identities=23%  Similarity=0.192  Sum_probs=57.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+|+.+.+.|+.++||+.|.++|.+.|.   .+.+|+|+|-.|-.+|+.++|+++|++|+++--+
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            5689999999999999999999999996   4668999999999999999999999999998644

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.07  E-value=1.7e-05  Score=67.35  Aligned_cols=94  Identities=16%  Similarity=0.064  Sum_probs=66.5

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN  257 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~----~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN  257 (292)
                      ...+.+.|..........++  .|.+...+...    ....++.|..+...|++++|+..|++|+.++|..   ...|+|
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~~~~  111 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL---PQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHH
Confidence            34445556655554445554  55555444322    2345799999999999999999999999999974   456888


Q ss_pred             HHHHHH-------hcCCHHHHHHHHHHHHH
Q 022783          258 VACCYS-------KLNQVKAGLSALEDALL  280 (292)
Q Consensus       258 ~Accya-------kLgq~eeALe~LekAIe  280 (292)
                      +|.+|.       .+|++++|+..+++|++
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~  141 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAE  141 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence            888888       88898877777766644

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.06  E-value=2.4e-05  Score=65.27  Aligned_cols=64  Identities=25%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      +.|..++..|+|++|++.|++++...+.. ....+++++|.||..+|++++|+..++++++...+
T Consensus       104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  167 (234)
T TIGR02521       104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ  167 (234)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            55555555555555555555555432211 12234666666666666666666666666665443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.04  E-value=3.1e-05  Score=64.54  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ...+.|..+++.|++++|+..|++++..+|+.   ..+++++|.+|..+|++++|+..++++++...
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  200 (234)
T TIGR02521       137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQR---PESLLELAELYYLRGQYKDARAYLERYQQTYN  200 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            44588999999999999999999999999863   45689999999999999999999999998843

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.03  E-value=2.8e-05  Score=68.58  Aligned_cols=70  Identities=19%  Similarity=0.222  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ...+++|..+++.|+|++|+..|++++..+|+......+|+++|-+|..+|++++|+..++++++...++
T Consensus        34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  103 (235)
T TIGR03302        34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH  103 (235)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            4457888899999999999999999998888754445678999999999999999999999998876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.03  E-value=2.9e-05  Score=57.93  Aligned_cols=67  Identities=21%  Similarity=0.538  Sum_probs=54.0

Q ss_pred             cCCceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCccccccc--chhhHHHHhhccCCceEEEE
Q 022783           92 EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKM  165 (292)
Q Consensus        92 ~KPlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~--~~g~~~~ai~~r~g~v~l~l  165 (292)
                      .+|+|+.+....+  ++++|..|.+++.|+++| |++||+|+.+-.      ++..  .+.+++.+++...+++.|.+
T Consensus        11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing------~~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992          11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNG------VSVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             CCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECC------EEcCccCHHHHHHHHHhCCCeEEEEE
Confidence            4679999988754  699999999999999988 999999999764      2444  66677888887666777765

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.01  E-value=2.4e-05  Score=57.03  Aligned_cols=66  Identities=21%  Similarity=0.474  Sum_probs=51.5

Q ss_pred             CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccch--hhHHHHhhccC-CceEEEE
Q 022783           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRV-GPLLMKM  165 (292)
Q Consensus        93 KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~--g~~~~ai~~r~-g~v~l~l  165 (292)
                      .|+|+.+....+++++|..|.+++.|+++| |++||+|+.+-..      +....  ..+...|+... .++.|++
T Consensus         1 ~~~G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           1 GGLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGT------DVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCccEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            479999998877799999999999999988 9999999998532      22233  56677788666 5667665

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=9.9e-06  Score=82.19  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+...+|+.++..|+|+.||.+|++||.++|.+   .++|.|+..||+.+|+|++|+.+-.+++++.++
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~   68 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---HVLYSNRSAAYASLGSYEKALKDATKTRRLNPD   68 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence            345689999999999999999999999999985   678999999999999999999999999999754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.00  E-value=2.6e-05  Score=68.73  Aligned_cols=69  Identities=13%  Similarity=0.209  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCccC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL--------NQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL--------gq~eeALe~LekAIelG~~D  285 (292)
                      ..+.+|..+++.|+|++|++.|+++++..|+..+...++|+++-||..+        |++++|++.++++++...++
T Consensus        72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302        72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            3479999999999999999999999999998766556899999999987        88999999999999986654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.99  E-value=2e-05  Score=82.88  Aligned_cols=75  Identities=9%  Similarity=0.037  Sum_probs=36.3

Q ss_pred             hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+....++.++...+ .+.+..|.+++++++|+..++++|..+|++   ..+++++|.|+..+|++++|++.|++++..
T Consensus       108 ~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~  183 (694)
T PRK15179        108 VWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---AREILLEAKSWDEIGQSEQADACFERLSRQ  183 (694)
T ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence            333334444433333 255555555555555555555555555542   334555555555555555555555555543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.99  E-value=2.1e-05  Score=82.69  Aligned_cols=94  Identities=16%  Similarity=-0.022  Sum_probs=76.4

Q ss_pred             HhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          186 AERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      |..|.+.+..++++++++  .+.+.....+.. ...+.+|..+.+.|+|++|++.|++++..+|++   ..+|.++|.++
T Consensus       122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~---~~~~~~~a~~l  198 (694)
T PRK15179        122 AFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF---ENGYVGWAQSL  198 (694)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Confidence            556777777777777775  454444444444 444699999999999999999999999977753   56799999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhC
Q 022783          263 SKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG  282 (292)
                      ..+|+.++|..+|++||+.-
T Consensus       199 ~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        199 TRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHcCCHHHHHHHHHHHHHhh
Confidence            99999999999999999873

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00011  Score=72.73  Aligned_cols=67  Identities=19%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI  289 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I  289 (292)
                      +|++..+.++++|.+||.+-+++|+++|++   ..++|-++-||..+|+|+.|+.++++|+++-+.+ +.|
T Consensus       261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~  327 (397)
T KOG0543|consen  261 LNLAACYLKLKEYKEAIESCNKVLELDPNN---VKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAA  327 (397)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHH
Confidence            599999999999999999999999999986   4689999999999999999999999999998876 444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.91  E-value=8.9e-05  Score=66.00  Aligned_cols=80  Identities=14%  Similarity=0.072  Sum_probs=65.2

Q ss_pred             hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH-HhcCC--HHHHHHHHHHHH
Q 022783          204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY-SKLNQ--VKAGLSALEDAL  279 (292)
Q Consensus       204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy-akLgq--~eeALe~LekAI  279 (292)
                      .+.++-...++. .-++.+|..+...|+|++|+..|++|+.++|++   ..++++.|.|+ ...|+  .++|+..+++|+
T Consensus        61 ~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al  137 (198)
T PRK10370         61 ALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN---AELYAALATVLYYQAGQHMTPQTREMIDKAL  137 (198)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            444444444444 445699999999999999999999999999974   56799999885 67787  599999999999


Q ss_pred             HhCccCh
Q 022783          280 LAGYEDF  286 (292)
Q Consensus       280 elG~~Df  286 (292)
                      ++..++-
T Consensus       138 ~~dP~~~  144 (198)
T PRK10370        138 ALDANEV  144 (198)
T ss_pred             HhCCCCh
Confidence            9998764

>PLN02789 farnesyltranstransferase

Probab=97.90  E-value=6.2e-05  Score=72.20  Aligned_cols=101  Identities=9%  Similarity=-0.047  Sum_probs=76.7

Q ss_pred             HHHhhccccchhhHH-HHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCH--HHHHHHHHHHHcCCCCccchhHHHHH
Q 022783          184 IRAERNSGVISNRVR-EIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKY--EVAREKFESVLGSKPTPEESSVASYN  257 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~-eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdY--eeAIe~fekALeldP~~~d~a~a~YN  257 (292)
                      |.+..+.|.+...++ ..+++  .+.+..+..++.++.+ .++..+.+.+++  +++++.++++|+++|++   ..+|++
T Consensus        71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN---y~AW~~  147 (320)
T PLN02789         71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN---YHAWSH  147 (320)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc---HHHHHH
Confidence            345555566666665 23333  4555555555556655 788888888874  78999999999999984   457999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          258 VACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       258 ~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ++-++..+|++++||+.|+++|+..+.++.
T Consensus       148 R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s  177 (320)
T PLN02789        148 RQWVLRTLGGWEDELEYCHQLLEEDVRNNS  177 (320)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence            999999999999999999999999888654

>PRK12370 invasion protein regulator; Provisional

Probab=97.88  E-value=6e-05  Score=76.31  Aligned_cols=90  Identities=13%  Similarity=0.101  Sum_probs=66.1

Q ss_pred             cccchhhHHHHHHH--hhHHHHHhhHhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC
Q 022783          190 SGVISNRVREIQMQ--NYMKKKEQKERRE-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (292)
Q Consensus       190 ~GvI~~~l~eiqea--~Y~kkk~lk~~~~-~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg  266 (292)
                      .|.+....++.+++  .|.+...+.++.. -.+.+|..+...|++++|+..|+++++++|.+   ..++++++.++..+|
T Consensus       344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~---~~~~~~~~~~~~~~g  420 (553)
T PRK12370        344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR---AAAGITKLWITYYHT  420 (553)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcc
Confidence            34444344444443  6666666665543 34689999999999999999999999999984   234566777777889


Q ss_pred             CHHHHHHHHHHHHHhC
Q 022783          267 QVKAGLSALEDALLAG  282 (292)
Q Consensus       267 q~eeALe~LekAIelG  282 (292)
                      ++++|+..++++++..
T Consensus       421 ~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        421 GIDDAIRLGDELRSQH  436 (553)
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999988765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.85  E-value=0.0001  Score=80.25  Aligned_cols=80  Identities=10%  Similarity=0.022  Sum_probs=68.6

Q ss_pred             hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          204 NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .|.+...+.+.....++.|..+.+.|++++|+..|+++++++|++   ..+++|+|.++..+|++++|+..|++|+++.+
T Consensus       598 ~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        598 DLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN---SNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            555665555554455799999999999999999999999999974   46799999999999999999999999999987


Q ss_pred             cCh
Q 022783          284 EDF  286 (292)
Q Consensus       284 ~Df  286 (292)
                      ++.
T Consensus       675 ~~~  677 (987)
T PRK09782        675 DDP  677 (987)
T ss_pred             CCH
Confidence            754

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.85  E-value=4.1e-05  Score=71.30  Aligned_cols=94  Identities=22%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             ccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC
Q 022783          191 GVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (292)
Q Consensus       191 GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq  267 (292)
                      ..+..++.++..+  .|.++..+.++.-+ .-|-|-=|+..|+|++|...|++|++. |...+.+..|-|++.|-.++|+
T Consensus        76 A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq  154 (250)
T COG3063          76 AHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQ  154 (250)
T ss_pred             HHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCC
Confidence            3344444444443  55555555555433 337788889999999999999999975 7766667789999999999999


Q ss_pred             HHHHHHHHHHHHHhCccC
Q 022783          268 VKAGLSALEDALLAGYED  285 (292)
Q Consensus       268 ~eeALe~LekAIelG~~D  285 (292)
                      .+.|-+.|++||++....
T Consensus       155 ~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         155 FDQAEEYLKRALELDPQF  172 (250)
T ss_pred             chhHHHHHHHHHHhCcCC
Confidence            999999999999987653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.85  E-value=0.00016  Score=67.72  Aligned_cols=68  Identities=16%  Similarity=0.170  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      -.+.+|..++..|+|++|+..|.+++...|+......++|++|.||..+|++++|+..|++.|+.-.+
T Consensus       182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            45799999999999999999999999999987677889999999999999999999999999988443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.85  E-value=1e-05  Score=61.48  Aligned_cols=55  Identities=29%  Similarity=0.445  Sum_probs=45.6

Q ss_pred             HcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       227 k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ..|+|++|+..|+++++.+|.+. ....|+++|-||.++|++++|+..+++ ++.+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~   55 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP   55 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC
Confidence            36899999999999999999532 345799999999999999999999988 54443

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=97.82  E-value=0.00013  Score=54.13  Aligned_cols=74  Identities=24%  Similarity=0.532  Sum_probs=51.4

Q ss_pred             EEEecC---CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchh--hHHHHhhccCCc
Q 022783           88 EVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGP  160 (292)
Q Consensus        88 ~v~l~K---PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g--~~~~ai~~r~g~  160 (292)
                      .+++.|   ++|+.+.....  .+++|..|.+++.|+++| +++||+|+.+-..      +....-  .....++...++
T Consensus         4 ~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~------~v~~~~~~~~~~~~~~~~~~   76 (85)
T smart00228        4 LVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGT------SVEGLTHLEAVDLLKKAGGK   76 (85)
T ss_pred             EEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCe
Confidence            444444   48888887644  689999999999999999 9999999997642      222221  222333333448


Q ss_pred             eEEEEeec
Q 022783          161 LLMKMQKR  168 (292)
Q Consensus       161 v~l~l~r~  168 (292)
                      +.|.+.|+
T Consensus        77 ~~l~i~r~   84 (85)
T smart00228       77 VTLTVLRG   84 (85)
T ss_pred             EEEEEEeC
Confidence            88888875

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.81  E-value=6.9e-05  Score=76.74  Aligned_cols=86  Identities=17%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             hhHHHHHHHhhHHHHHhh--HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHH
Q 022783          195 NRVREIQMQNYMKKKEQK--ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGL  272 (292)
Q Consensus       195 ~~l~eiqea~Y~kkk~lk--~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeAL  272 (292)
                      ..+.+|++.+---+..+.  .+++-..-+|+.|+-.|+|+.|++||+.||..+|++  + .+|+-++..++.-.+.++||
T Consensus       408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd--~-~lWNRLGAtLAN~~~s~EAI  484 (579)
T KOG1125|consen  408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND--Y-LLWNRLGATLANGNRSEEAI  484 (579)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch--H-HHHHHhhHHhcCCcccHHHH
Confidence            344555554333333333  334445589999999999999999999999999983  4 57999999999999999999


Q ss_pred             HHHHHHHHhCc
Q 022783          273 SALEDALLAGY  283 (292)
Q Consensus       273 e~LekAIelG~  283 (292)
                      .+|.+|+++-+
T Consensus       485 sAY~rALqLqP  495 (579)
T KOG1125|consen  485 SAYNRALQLQP  495 (579)
T ss_pred             HHHHHHHhcCC
Confidence            99999999953

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=97.80  E-value=7.7e-05  Score=56.89  Aligned_cols=68  Identities=22%  Similarity=0.392  Sum_probs=50.9

Q ss_pred             ceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh--ccCCceEEEEeecc
Q 022783           95 YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQKRY  169 (292)
Q Consensus        95 lGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~--~r~g~v~l~l~r~~  169 (292)
                      ||+.|....+ ++++|.+|.+++.|+++| |++||+|+++-.   .   +..+....+..|.  .....+.|++.|.-
T Consensus         3 lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing---~---~v~~~~~~~~~l~~~~~g~~v~l~v~R~g   73 (82)
T PF13180_consen    3 LGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAING---K---PVNSSEDLVNILSKGKPGDTVTLTVLRDG   73 (82)
T ss_dssp             -SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETT---E---ESSSHHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred             ECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECC---E---EcCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            6899988765 699999999999999999 999999999763   1   2245555566663  33556799999943

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.79  E-value=1.7e-05  Score=52.22  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             HHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHH
Q 022783          237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (292)
Q Consensus       237 ~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe  273 (292)
                      +|++||+++|++   ..+|+|+|.+|..+|++++|++
T Consensus         1 ~y~kAie~~P~n---~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNN---AEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCC---HHHHHHHHHHHHHCcCHHhhcC
Confidence            489999999985   5689999999999999999973

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=8.4e-05  Score=76.18  Aligned_cols=64  Identities=17%  Similarity=0.253  Sum_probs=59.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      .|+|.++.+.++|++||..|++||.++|.+   ...|--+|.||..+|+++.|++++.+|+.+..++
T Consensus       459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  459 NNLGHAYRKLNKYEEAIDYYQKALLLSPKD---ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            499999999999999999999999999984   4468899999999999999999999999998765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.76  E-value=5e-05  Score=48.38  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          253 VASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       253 ~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .+|||+|.||..+|++++|+++|++||++..
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            3577777777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=9e-05  Score=73.27  Aligned_cols=69  Identities=25%  Similarity=0.461  Sum_probs=56.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCC----Cccc--------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKP----TPEE--------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP----~~~d--------~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ..|+.||+.|+|..|+..|++|+..=.    .+.+        .-.+|.|+|.||.++++|.+|+.+|+++|+++..+-+
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K  292 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK  292 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence            889999999999999999999984211    1101        1357999999999999999999999999999877554


Q ss_pred             h
Q 022783          288 V  288 (292)
Q Consensus       288 ~  288 (292)
                      .
T Consensus       293 A  293 (397)
T KOG0543|consen  293 A  293 (397)
T ss_pred             H
Confidence            4

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00015  Score=73.29  Aligned_cols=64  Identities=20%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCc-------------------------------cchhHHHHHHHHHHHhcCCH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTP-------------------------------EESSVASYNVACCYSKLNQV  268 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~-------------------------------~d~a~a~YN~AccyakLgq~  268 (292)
                      -.|-.+.++++-..||+.|..|++++|.+                               +..+-+|--++-||.++++.
T Consensus       369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~  448 (559)
T KOG1155|consen  369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL  448 (559)
T ss_pred             HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence            45778899999999999999999999984                               11134577778899999999


Q ss_pred             HHHHHHHHHHHHhCc
Q 022783          269 KAGLSALEDALLAGY  283 (292)
Q Consensus       269 eeALe~LekAIelG~  283 (292)
                      ++|+.|+.+|+..|-
T Consensus       449 ~eAiKCykrai~~~d  463 (559)
T KOG1155|consen  449 EEAIKCYKRAILLGD  463 (559)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999999883

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.73  E-value=0.0001  Score=76.44  Aligned_cols=79  Identities=14%  Similarity=0.045  Sum_probs=50.7

Q ss_pred             hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          204 NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .|.+...+.+.... ..++|..+.+.|++++|+..|+++++++|++   ..+++++|.+|..+|++++|+..|+++++..
T Consensus       272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~---~~a~~~La~~l~~~G~~~eA~~~l~~al~~~  348 (656)
T PRK15174        272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL---PYVRAMYARALRQVGQYTAASDEFVQLAREK  348 (656)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            44444444333322 3467777777777777777777777777753   3456777777777777777777777777665


Q ss_pred             ccC
Q 022783          283 YED  285 (292)
Q Consensus       283 ~~D  285 (292)
                      .++
T Consensus       349 P~~  351 (656)
T PRK15174        349 GVT  351 (656)
T ss_pred             ccc
Confidence            543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.72  E-value=0.00018  Score=66.17  Aligned_cols=69  Identities=13%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+.+..|..+++.|+|++|++.|++.+...|..+....+.+++|-+|.+++++++|+..+++.|++-++
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            445678888888888888888888888888876555566788888888888888888888888887544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=3.1e-05  Score=75.05  Aligned_cols=70  Identities=23%  Similarity=0.383  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~  288 (292)
                      +..+|.|..+|++|+|++|+..|+.|++..--.   +.+.||+|.||...+++..|++...+-|+.|.+|++.
T Consensus       145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE  214 (459)
T KOG4340|consen  145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE  214 (459)
T ss_pred             chhccchheeeccccHHHHHHHHHHHHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence            345699999999999999999999999765321   3468999999999999999999999999999988764

>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]

Probab=97.71  E-value=0.00012  Score=74.19  Aligned_cols=89  Identities=22%  Similarity=0.413  Sum_probs=69.6

Q ss_pred             ccccceEEEEec---CC-ceeEEee----eCCCCeEEEEeCCCCCcccccCcccCCEEEEeccc-cCcccccccchhhHH
Q 022783           81 EEKYEEYEVEIE---QP-YGLKFAK----GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV-FGTEIWPAAEYGRTM  151 (292)
Q Consensus        81 ~~~~~~~~v~l~---KP-lGl~~~~----~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~-fg~e~w~a~~~g~~~  151 (292)
                      -|..+-++|+|.   =| |||.+--    ..||||||.+|-+||.-++.|.|.+||.|+.|..+ |++ |= -++-=+|+
T Consensus       245 smslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFEN-mS-Nd~AVrvL  322 (626)
T KOG3571|consen  245 SMSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFEN-MS-NDQAVRVL  322 (626)
T ss_pred             ccceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhh-cC-chHHHHHH
Confidence            356788888885   35 9998743    36889999999999999999999999999999885 662 22 22222566


Q ss_pred             HHhhccCCceEEEEeeccCC
Q 022783          152 YTIRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       152 ~ai~~r~g~v~l~l~r~~~~  171 (292)
                      .-|-++.||+.|+..+++-+
T Consensus       323 REaV~~~gPi~ltvAk~~DP  342 (626)
T KOG3571|consen  323 REAVSRPGPIKLTVAKCWDP  342 (626)
T ss_pred             HHHhccCCCeEEEEeeccCC
Confidence            66679999999999887654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=3.9e-05  Score=72.01  Aligned_cols=61  Identities=20%  Similarity=0.204  Sum_probs=53.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .+.|+.+|..++|..||.+|.+||.++|++   ...|-|+|.||.++++++.+..+|.+|+++-
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~---~~Y~tnralchlk~~~~~~v~~dcrralql~   74 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTV---ASYYTNRALCHLKLKHWEPVEEDCRRALQLD   74 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCc---chhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence            477888999999999999999999999984   3458899999999999999999999999874

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.65  E-value=0.0002  Score=71.54  Aligned_cols=64  Identities=22%  Similarity=0.310  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+..|..+++.|+|++|+..|.+++..+|+.   ..+|+.+|.+|..+|++++|+..++++++.+++
T Consensus        25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~   88 (899)
T TIGR02917        25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGDYAAAEKELRKALSLGYP   88 (899)
T ss_pred             HHHHHHHHHHcCChHhHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            4566777777777777777777777777753   346777777777777777777777777776655

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.64  E-value=0.00015  Score=60.48  Aligned_cols=64  Identities=23%  Similarity=0.348  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+.+|..++..|+|++|++.|+++++..|++.-...+++++|.|+..+|++++|+..|+..-..
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~  114 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE  114 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc
Confidence            4688999999999999999999999887765445678999999999999999999999774333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.64  E-value=0.0002  Score=65.35  Aligned_cols=72  Identities=19%  Similarity=0.153  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc-------------------------------chhHHHHHHHHHHHhcC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------ESSVASYNVACCYSKLN  266 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~-------------------------------d~a~a~YN~AccyakLg  266 (292)
                      ++..|..+.+.|++++|+..|++||+++|++.                               ....+|..+|.+|..+|
T Consensus       149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg  228 (280)
T PF13429_consen  149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG  228 (280)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence            45888999999999999999999999999851                               11346889999999999


Q ss_pred             CHHHHHHHHHHHHHhCccChhhh
Q 022783          267 QVKAGLSALEDALLAGYEDFKVI  289 (292)
Q Consensus       267 q~eeALe~LekAIelG~~Df~~I  289 (292)
                      ++++|+..++++++...+|+..+
T Consensus       229 ~~~~Al~~~~~~~~~~p~d~~~~  251 (280)
T PF13429_consen  229 RYEEALEYLEKALKLNPDDPLWL  251 (280)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHH
T ss_pred             ccccccccccccccccccccccc
Confidence            99999999999999999887764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.63  E-value=0.00029  Score=62.45  Aligned_cols=68  Identities=22%  Similarity=0.290  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ....+..|..+++.|+|++|++.|++.+..-|+.+-...+++.+|-+|.++|++++|+..+++-|+.-
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            45667999999999999999999999998888876677889999999999999999999999998873

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.63  E-value=0.00039  Score=58.13  Aligned_cols=97  Identities=18%  Similarity=0.138  Sum_probs=68.2

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhh---HhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQK---ERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk---~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      .|+.+.....+.+.+++  .|.+....-   ... .-.+..|..+...|++++|+..+++++...|+.+....+.+..|.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            44445555555555554  555554431   112 234688999999999999999999999877874444567888899


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCc
Q 022783          261 CYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~  283 (292)
                      ++..+|+.++|+..+-.++.-.-
T Consensus        84 ~L~~~gr~~eAl~~~l~~la~~~  106 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEALAETL  106 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999988876433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.61  E-value=0.00017  Score=71.08  Aligned_cols=102  Identities=20%  Similarity=0.157  Sum_probs=75.1

Q ss_pred             cccHHH--HHHHhhccccchhhHHHHHH------------HhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022783          177 ELSEKE--IIRAERNSGVISNRVREIQM------------QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVL  242 (292)
Q Consensus       177 ~~~e~~--~~~a~rN~GvI~~~l~eiqe------------a~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekAL  242 (292)
                      |-||.-  +-.-++..|++.+.|++|++            ++|++.|++.+..    ..+....+.++|.+|++.+++.|
T Consensus       221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l----es~e~~ie~~~~t~cle~ge~vl  296 (504)
T KOG0624|consen  221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL----ESAEQAIEEKHWTECLEAGEKVL  296 (504)
T ss_pred             cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHH
Confidence            445652  33567899999999999999            6898888887776    66777788899999999999999


Q ss_pred             cCCCCc-----------------------------------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          243 GSKPTP-----------------------------------EESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       243 eldP~~-----------------------------------~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +.+|..                                   ++...++..+|-+|..-.+|+.||.++++|.++.
T Consensus       297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            888872                                   1113456666666666666666666666666664

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.59  E-value=0.00023  Score=73.88  Aligned_cols=98  Identities=12%  Similarity=0.028  Sum_probs=74.7

Q ss_pred             HhhccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          186 AERNSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      +..+.|.+....++.+++  .|.+...+.+.... ...+|..+.+.|+|++|+..|+++++.+|+.   ..+++++|.++
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~---~~~~~~~a~al  362 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT---SKWNRYAAAAL  362 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHH
Confidence            444556666555555554  45555554444333 3589999999999999999999999999973   34567789999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCccCh
Q 022783          263 SKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+|++++|+..|++|++...+++
T Consensus       363 ~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        363 LQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhChhhc
Confidence            999999999999999999976643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.59  E-value=9.1e-05  Score=47.18  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT  247 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~  247 (292)
                      .++++|..++.+|+|++|+..|++||+++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4579999999999999999999999999996

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.58  E-value=0.00024  Score=77.84  Aligned_cols=66  Identities=12%  Similarity=0.065  Sum_probs=57.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      +..|..+.+.|+|++|+..|+++++++|++   ..+++++|.+|..+|++++|++.|++|+++..++..
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            466888899999999999999999999974   457999999999999999999999999998766543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.58  E-value=0.00052  Score=64.31  Aligned_cols=64  Identities=20%  Similarity=0.113  Sum_probs=50.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ..+|..+.+.|++++|+..|+++++.+|+.   ..+++++|.+|.++|++++|++.++++++.+..+
T Consensus       184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        184 CELAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            367777788888888888888888888763   3468888888888888888888888888876543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.57  E-value=0.00058  Score=59.11  Aligned_cols=103  Identities=17%  Similarity=0.292  Sum_probs=74.4

Q ss_pred             cccHHHHHH---HhhccccchhhHHHHHHH-hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchh
Q 022783          177 ELSEKEIIR---AERNSGVISNRVREIQMQ-NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESS  252 (292)
Q Consensus       177 ~~~e~~~~~---a~rN~GvI~~~l~eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a  252 (292)
                      +.|+.+.|.   .....|+...+...++.- ..+.-..-..  ...+.+|-++|+.++|++|+..|++-|.++|+.++..
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~--qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd   84 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAE--QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD   84 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence            456666553   344555655555555441 1111010011  1236899999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHh
Q 022783          253 VASYNVACCYSKLNQ---------------VKAGLSALEDALLA  281 (292)
Q Consensus       253 ~a~YN~AccyakLgq---------------~eeALe~LekAIel  281 (292)
                      .++|-+|.++..+..               ...|+.++++-|..
T Consensus        85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            899999999999987               88999999988876

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.57  E-value=0.0003  Score=70.29  Aligned_cols=67  Identities=13%  Similarity=0.188  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ...+..|..+.+.|++++|++.++++++.+|++   ..+++++|.+|..+|++++|+..++++++..+++
T Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  803 (899)
T TIGR02917       737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN  803 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence            344567777777777777777777777777763   3467888888888888888888888888776554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.56  E-value=0.00023  Score=73.82  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=48.3

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      |+|.+..|-|.-+....+.+  +|.++....++.-..+ -.|..+.+.|+.++||..|++|+-+||.+   ...-|++|.
T Consensus       489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn---~l~~~~~~~  565 (638)
T KOG1126|consen  489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN---PLCKYHRAS  565 (638)
T ss_pred             hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC---chhHHHHHH
Confidence            45555556555555544444  3333333333222222 55555566666666666666666666653   223455555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHh
Q 022783          261 CYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIel  281 (292)
                      .+..++++++|+..|++--++
T Consensus       566 il~~~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKEL  586 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHh
Confidence            555555555555555554444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.52  E-value=0.00063  Score=56.89  Aligned_cols=66  Identities=18%  Similarity=0.106  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .|+.|..+...|+.++|+..|++||+..++......++.++|.+|-.+|++++|+..|+++++.-.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p   69 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP   69 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            478999999999999999999999987766545667899999999999999999999999998643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.51  E-value=0.00022  Score=74.00  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      -+|.+|.+.++|+.|.-.|++|+++||.+   .++...++..+-.+|+.++||..+++|+.+.+.
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k  555 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK  555 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence            45555555555555555555555555542   344444555555555555555555555555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.50  E-value=0.0005  Score=63.66  Aligned_cols=96  Identities=18%  Similarity=0.117  Sum_probs=70.6

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      +|..|.+..+....+++  ..-.... +.+.--+.|.|.++.+++.++.||+-..+||+++|.+   -.++--+|-.|.+
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---~kAl~RRAeayek  180 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---EKALERRAEAYEK  180 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---HHHHHHHHHHHHh
Confidence            45666666665555543  1111111 1111112399999999999999999999999999974   3467788999999


Q ss_pred             cCCHHHHHHHHHHHHHhCccCh
Q 022783          265 LNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~~Df  286 (292)
                      +.++++||++|.+.+++.+...
T Consensus       181 ~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcchH
Confidence            9999999999999999976643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.48  E-value=0.00045  Score=64.72  Aligned_cols=59  Identities=14%  Similarity=0.002  Sum_probs=31.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ..+..+.+.|++++|+..++++++.+|+.    ..+.+++-+|.+.|++++|+..++++++..
T Consensus       254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~~  312 (389)
T PRK11788        254 KLMECYQALGDEAEGLEFLRRALEEYPGA----DLLLALAQLLEEQEGPEAAQALLREQLRRH  312 (389)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            44455555555555555555555555542    123555555555555555555555555553

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.48  E-value=0.00019  Score=45.15  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          254 ASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +|+++|.+|..+|++++|++++++|+++-
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            35555555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.47  E-value=0.0004  Score=51.94  Aligned_cols=65  Identities=20%  Similarity=0.408  Sum_probs=46.7

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus        95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      +|+.+.. .+|++.|..|.+++.|+++| |++||+|+.+-.      ++..++...+...+ ....+.+.+.|.
T Consensus         3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing------~~v~~~~~~l~~~~-~~~~v~l~v~r~   67 (80)
T cd00990           3 LGLTLDK-EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNG------WRVDALQDRLKEYQ-AGDPVELTVFRD   67 (80)
T ss_pred             ccEEEEc-cCCcEEEEEECCCChHHHhC-CCCCCEEEEECC------EEhHHHHHHHHhcC-CCCEEEEEEEEC
Confidence            6888866 46789999999999999999 999999999853      23333333333322 234678888774

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN02789 farnesyltranstransferase

Probab=97.45  E-value=0.00069  Score=65.07  Aligned_cols=110  Identities=15%  Similarity=-0.002  Sum_probs=78.8

Q ss_pred             CCccccccccHHH-HHHHhhccc-cchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHcCC
Q 022783          170 GKMEQTGELSEKE-IIRAERNSG-VISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSK  245 (292)
Q Consensus       170 ~~~~~~~~~~e~~-~~~a~rN~G-vI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~g-dYeeAIe~fekALeld  245 (292)
                      -.+...+++.+.= .|++..-.+ ....     ....+.+..++.+..+..+ .+|.++.+++ ++++|++.++++|+.+
T Consensus        28 ~~i~y~~~~~~a~~~~ra~l~~~e~ser-----AL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n  102 (320)
T PLN02789         28 VPIAYTPEFREAMDYFRAVYASDERSPR-----ALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN  102 (320)
T ss_pred             cceeeCHHHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC
Confidence            3344555666664 355543322 2221     1234545555555555554 8999999998 6899999999999999


Q ss_pred             CCccchhHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCccChh
Q 022783          246 PTPEESSVASYNVACCYSKLNQV--KAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       246 P~~~d~a~a~YN~AccyakLgq~--eeALe~LekAIelG~~Df~  287 (292)
                      |++   ..+|++++.++.++++.  +++++.+++||++..++|.
T Consensus       103 pkn---yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~  143 (320)
T PLN02789        103 PKN---YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH  143 (320)
T ss_pred             Ccc---hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence            984   45799999999999974  7899999999999887764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.44  E-value=0.00034  Score=43.95  Aligned_cols=32  Identities=38%  Similarity=0.473  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPT  247 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~  247 (292)
                      ...+.+|..+++.|+|++|++.|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34679999999999999999999999999997

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.41  E-value=0.00081  Score=62.99  Aligned_cols=67  Identities=10%  Similarity=0.086  Sum_probs=59.8

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          216 EQDLREGLQL-YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       216 ~~~~n~G~~L-~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ..+++.|..+ ++.|+|++|+..|++.+...|+......++|-+|-+|..+|++++|+..++++++.-
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y  210 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY  210 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4567888887 678999999999999999999865556789999999999999999999999999873

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.0004  Score=71.65  Aligned_cols=66  Identities=24%  Similarity=0.341  Sum_probs=54.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCc----------------------------cchhHHHHHHHHHHHhcCCHHHH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTP----------------------------EESSVASYNVACCYSKLNQVKAG  271 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~----------------------------~d~a~a~YN~AccyakLgq~eeA  271 (292)
                      -+|..+|++++|++|+++|+.-++.+-+.                            .+....+||.||.+...|+|.+|
T Consensus       115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA  194 (652)
T KOG2376|consen  115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA  194 (652)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence            56888999999999999999986544321                            12356799999999999999999


Q ss_pred             HHHHHHHHHhCccC
Q 022783          272 LSALEDALLAGYED  285 (292)
Q Consensus       272 Le~LekAIelG~~D  285 (292)
                      ++.|++|+.+|.+.
T Consensus       195 ~elL~kA~~~~~e~  208 (652)
T KOG2376|consen  195 IELLEKALRICREK  208 (652)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998888653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.38  E-value=0.001  Score=73.11  Aligned_cols=65  Identities=18%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      .+.+|..+.+.|+|++|++.|+++++.+|++   ..+++++|.+|..+|++++|++.|+++++...++
T Consensus       606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~---~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~  670 (1157)
T PRK11447        606 DLTLADWAQQRGDYAAARAAYQRVLTREPGN---ADARLGLIEVDIAQGDLAAARAQLAKLPATANDS  670 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence            4578888888888888888888888888864   3468888888888888888888888887765544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.36  E-value=0.00025  Score=51.20  Aligned_cols=60  Identities=27%  Similarity=0.299  Sum_probs=43.7

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcC-CHHHHHHHHHHHHcCCC
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTG-KYEVAREKFESVLGSKP  246 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~g-dYeeAIe~fekALeldP  246 (292)
                      +++.|.+.-..++..++  .|.+.....+.... ++++|..+++.| +|++|++.|+++|+++|
T Consensus         6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34555555555555554  55555555554433 459999999999 79999999999999998

...

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.36  E-value=0.0011  Score=61.86  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=77.0

Q ss_pred             cccHHHHHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHH
Q 022783          177 ELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS  255 (292)
Q Consensus       177 ~~~e~~~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~  255 (292)
                      +-+|+-..|....+|.+..+=......+-.|+.+..++.+. +.-++..|.+.|+.+.|-+.|++||.++|++   +.++
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---GdVL  106 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN---GDVL  106 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---cchh
Confidence            44666667765555555554444444455555554444433 3588899999999999999999999999985   5569


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          256 YNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       256 YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +|-+..++.+|++++|...+++|++.
T Consensus       107 NNYG~FLC~qg~~~eA~q~F~~Al~~  132 (250)
T COG3063         107 NNYGAFLCAQGRPEEAMQQFERALAD  132 (250)
T ss_pred             hhhhHHHHhCCChHHHHHHHHHHHhC
Confidence            99999999999999999999999875

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=97.31  E-value=0.0013  Score=49.66  Aligned_cols=66  Identities=24%  Similarity=0.477  Sum_probs=49.1

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccch--hhHHHHhhcc-CCceEEEEeec
Q 022783           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQR-VGPLLMKMQKR  168 (292)
Q Consensus        95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~--g~~~~ai~~r-~g~v~l~l~r~  168 (292)
                      ||+.|.. ++++++|..|.+++.|+++| +++||+|+.+-..      +....  ..+...++.. ..++.|.+.|.
T Consensus         4 lG~~~~~-~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~------~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           4 IGLELKY-DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGE------PVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             EEEEEEE-cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCE------EcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            7888876 46789999999999999998 9999999998542      22222  3445566543 34578888886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.31  E-value=0.00095  Score=70.29  Aligned_cols=94  Identities=19%  Similarity=0.176  Sum_probs=70.9

Q ss_pred             HHhhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      .++++.|....++     ..|.+...+.+.. .-.+.+|..+.+.|++++|+..++++++.+|++   .. |+++|.+|.
T Consensus        57 ~~~~~~g~~~~A~-----~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~  127 (765)
T PRK10049         57 VAYRNLKQWQNSL-----TLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK---AN-LLALAYVYK  127 (765)
T ss_pred             HHHHHcCCHHHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHH
Confidence            3455555554332     2444444444443 334588899999999999999999999999974   34 899999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCccChh
Q 022783          264 KLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .+|++++|+..+++|+++.+++..
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~~  151 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQQ  151 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999877643

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.30  E-value=0.0022  Score=59.08  Aligned_cols=103  Identities=12%  Similarity=0.170  Sum_probs=74.0

Q ss_pred             cccHHHHH---HHhhccccchhhHHHHHHH-hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchh
Q 022783          177 ELSEKEII---RAERNSGVISNRVREIQMQ-NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESS  252 (292)
Q Consensus       177 ~~~e~~~~---~a~rN~GvI~~~l~eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a  252 (292)
                      +.++.+.|   ...++.|+...++..++.. ..+.....-  ....+.+|..+++.++|++|+..|++.+...|++++..
T Consensus        29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a--~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYS--QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            34555543   4456678877776666553 111111111  12347999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHh
Q 022783          253 VASYNVACCYSKLNQ------------------VKAGLSALEDALLA  281 (292)
Q Consensus       253 ~a~YN~AccyakLgq------------------~eeALe~LekAIel  281 (292)
                      .++|.+|.|+..+++                  ..+|+..|++-|+.
T Consensus       107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~  153 (243)
T PRK10866        107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG  153 (243)
T ss_pred             HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence            899999999766541                  35788888888876

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.30  E-value=0.0011  Score=61.54  Aligned_cols=80  Identities=11%  Similarity=0.021  Sum_probs=54.8

Q ss_pred             hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~-a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+.+...+.+.. .-....|.++++.|++++|+..+++++...|...+. ...|+++|.+|..+|++++|+..+++++..
T Consensus       136 ~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         136 AARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            444444433333 223477888888888888888888888877642222 335778888888888888888888888766


Q ss_pred             Cc
Q 022783          282 GY  283 (292)
Q Consensus       282 G~  283 (292)
                      ..
T Consensus       216 ~~  217 (355)
T cd05804         216 SA  217 (355)
T ss_pred             cc
Confidence            54

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.27  E-value=0.001  Score=61.63  Aligned_cols=62  Identities=21%  Similarity=0.151  Sum_probs=56.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ...|..+...|+|++|+..|+++++++|++   ..+++++|.+|..+|++++|+..++++++...
T Consensus       118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         118 GMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            378899999999999999999999999974   45799999999999999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.25  E-value=0.00088  Score=70.52  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ..+|..|....+.++++.|.+.|.....++|++   +.+|+|++|.|.++++..+|...+.+|++-.|+.
T Consensus       520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~---~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN---AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc---hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence            556788888999999999999999999999974   5579999999999999999999999999988663

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.00024  Score=70.92  Aligned_cols=71  Identities=17%  Similarity=0.234  Sum_probs=62.4

Q ss_pred             HHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          209 KEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       209 k~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +....++++.+.+|+.+|+..+|.+||+.|+.||+++|++   +..|.|+|.||..++++++|+-+..+.+.+-
T Consensus        43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k  113 (486)
T KOG0550|consen   43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---ASYYSNRAATLMMLGRFEEALGDARQSVRLK  113 (486)
T ss_pred             chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---hhhhchhHHHHHHHHhHhhcccchhhheecC
Confidence            3444556677899999999999999999999999999984   5679999999999999999999999997664

>PRK15331 chaperone protein SicA; Provisional

Probab=97.14  E-value=0.0018  Score=57.47  Aligned_cols=95  Identities=5%  Similarity=-0.044  Sum_probs=63.9

Q ss_pred             HhhccccchhhHHHHHHHhhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          186 AERNSGVISNRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      .+++.|.+..+...++--     -.......++ +-+|..+..+++|++|+..|.-|..+++++  .. ..|+.|-||..
T Consensus        46 ~~y~~Gk~~eA~~~F~~L-----~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~-p~f~agqC~l~  117 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFL-----CIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YR-PVFFTGQCQLL  117 (165)
T ss_pred             HHHHCCCHHHHHHHHHHH-----HHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CC-ccchHHHHHHH
Confidence            345566655544333332     2222222233 477777788899999999999999887763  32 38888999999


Q ss_pred             cCCHHHHHHHHHHHHHhCccChhhhh
Q 022783          265 LNQVKAGLSALEDALLAGYEDFKVIY  290 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~~Df~~Ir  290 (292)
                      +|+.+.|+.+++-|++.  ..+..|+
T Consensus       118 l~~~~~A~~~f~~a~~~--~~~~~l~  141 (165)
T PRK15331        118 MRKAAKARQCFELVNER--TEDESLR  141 (165)
T ss_pred             hCCHHHHHHHHHHHHhC--cchHHHH
Confidence            99999999999999883  3344443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.13  E-value=0.0044  Score=51.67  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=60.3

Q ss_pred             HHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      +..+..|+..++...++...-.. ........-.+++|.+++.+|+|++|+..++.+ .-++   -...++.-+|-+|..
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~---~~~~~~~~~Gdi~~~  130 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEA---FKALAAELLGDIYLA  130 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcc---hHHHHHHHHHHHHHH
Confidence            44556666666555444421110 000001122468999999999999999999762 2212   235678889999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 022783          265 LNQVKAGLSALEDAL  279 (292)
Q Consensus       265 Lgq~eeALe~LekAI  279 (292)
                      +|++++|+..+++||
T Consensus       131 ~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  131 QGDYDEARAAYQKAL  145 (145)
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999999986

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.09  E-value=0.0032  Score=64.35  Aligned_cols=65  Identities=23%  Similarity=0.173  Sum_probs=56.5

Q ss_pred             HHH-HHHHHHHHcCCHHHHHHHHHHHHcC-----CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          217 QDL-REGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       217 ~~~-n~G~~L~k~gdYeeAIe~fekALel-----dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+. ..|..|...++|.+|+..|++||.+     -++.+..+..+.|+|..|.+.|++++|-.+|++|+++
T Consensus       242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I  312 (508)
T KOG1840|consen  242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI  312 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            344 5999999999999999999999953     2444456888999999999999999999999999987

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.09  E-value=0.0014  Score=49.50  Aligned_cols=58  Identities=19%  Similarity=0.368  Sum_probs=45.5

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CCceEEEEeec
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g~v~l~l~r~  168 (292)
                      .++++|.+|.+++.|+++| |+.||+|+.+..      ++..+...+..++...  ..++.|++.|.
T Consensus        23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing------~~i~~~~~~~~~l~~~~~~~~i~l~v~r~   82 (90)
T cd00987          23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNG------KPVKSVADLRRALAELKPGDKVTLTVLRG   82 (90)
T ss_pred             CCEEEEEEECCCCHHHHcC-CCcCCEEEEECC------EECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            4589999999999999999 999999999863      3455555666666654  56788998874

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.05  E-value=0.002  Score=58.07  Aligned_cols=64  Identities=20%  Similarity=0.154  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC-----------HHHHHHHHH
Q 022783          218 DLREGLQLYRT----------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-----------VKAGLSALE  276 (292)
Q Consensus       218 ~~n~G~~L~k~----------gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq-----------~eeALe~Le  276 (292)
                      ..+=|.+|.++          ..|++||..|++||.++|+   ...++||++.+|+.++.           +++|.++++
T Consensus        28 L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq  104 (186)
T PF06552_consen   28 LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ  104 (186)
T ss_dssp             HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence            34667777443          5689999999999999997   46689999999998874           788888888


Q ss_pred             HHHHhCcc
Q 022783          277 DALLAGYE  284 (292)
Q Consensus       277 kAIelG~~  284 (292)
                      +|.+..+.
T Consensus       105 kAv~~~P~  112 (186)
T PF06552_consen  105 KAVDEDPN  112 (186)
T ss_dssp             HHHHH-TT
T ss_pred             HHHhcCCC
Confidence            88877654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.02  E-value=0.0052  Score=53.24  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..+.++.|...++.|+|++|++.|+....--|-.+-...+..+++-+|.+.+++++|+..+++=|++.+.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4567899999999999999999999999888876666788999999999999999999999999999865

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.99  E-value=0.00055  Score=69.06  Aligned_cols=63  Identities=14%  Similarity=0.103  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ..++++.+++.++|+.|+..|.+||+++|+.   +..+-|+|..|.+.+++..|+.++.+||++-.
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnc---a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP   69 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNC---AIYFANRALAHLKVESFGGALHDALKAIELDP   69 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcc---eeeechhhhhheeechhhhHHHHHHhhhhcCc
Confidence            3478888999999999999999999999974   44588999999999999999999999999863

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.97  E-value=0.0039  Score=65.76  Aligned_cols=66  Identities=12%  Similarity=-0.007  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      .+.+|..+...|++++|++.++++++++|++   ..+++.+|.++..+|++++|...++++++.-.++-
T Consensus       396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~---~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        396 RIDYASVLQARGWPRAAENELKKAEVLEPRN---INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            3599999999999999999999999999974   34799999999999999999999999999877654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.97  E-value=0.0028  Score=64.67  Aligned_cols=62  Identities=11%  Similarity=0.040  Sum_probs=55.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      -.|..+...|++++|...|++|++++|+    ..+|+.+|.+|...|+.++|++.+++|+.+...+
T Consensus       425 ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        425 ILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            4566667889999999999999999995    4579999999999999999999999999998663

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.97  E-value=0.00025  Score=69.27  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=43.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      +...+..|.+++||+.|..||+++|.   .+.+|-++|.+|.++++...|+.+|..||++.++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D  180 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD  180 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCcc
Confidence            34445566677888888888887775   3566777777777777777777777777777765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.0021  Score=65.61  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=79.7

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      -++.|.|+-.-+-++..++  .|.++..+.+.---++ |++-.|-..|+|++-++--++||+++|+   +..+++-+|.+
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---Y~KAl~RRA~A  192 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---YVKALLRRASA  192 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---HHHHHHHHHHH
Confidence            5677888877777777776  4555554444422334 9999999999999999999999999995   68899999999


Q ss_pred             HHhcCCHHHHHHHHHHH-HHhCccCh
Q 022783          262 YSKLNQVKAGLSALEDA-LLAGYEDF  286 (292)
Q Consensus       262 yakLgq~eeALe~LekA-IelG~~Df  286 (292)
                      |-.+|++++|+.++.-- |--||.+-
T Consensus       193 ~E~lg~~~eal~D~tv~ci~~~F~n~  218 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTVLCILEGFQNA  218 (606)
T ss_pred             HHhhccHHHHHHhhhHHHHhhhcccc
Confidence            99999999999999866 77777753

>PRK15331 chaperone protein SicA; Provisional

Probab=96.90  E-value=0.0035  Score=55.58  Aligned_cols=67  Identities=12%  Similarity=0.106  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .+..|-.+|..|+|++|...|.-..-++|.+.+   -|..+|+|+-.+++|++|+..+..|..++-+|+.
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence            347888999999999999999999999998643   4999999999999999999999999988877764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.0041  Score=63.13  Aligned_cols=95  Identities=17%  Similarity=0.091  Sum_probs=76.6

Q ss_pred             HHHHhhccccchhhHHHHHHH-hhHHH-HHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHH
Q 022783          183 IIRAERNSGVISNRVREIQMQ-NYMKK-KEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (292)
Q Consensus       183 ~~~a~rN~GvI~~~l~eiqea-~Y~kk-k~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~A  259 (292)
                      -|||-+..|..+..+....=+ +|+++ -+.++.+-.. .-+|..|-+.++.++||++|.+|+.....   .+.+++.+|
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt---e~~~l~~La  473 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT---EGSALVRLA  473 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc---chHHHHHHH
Confidence            388999999988877766666 44333 3334433333 49999999999999999999999988765   256899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 022783          260 CCYSKLNQVKAGLSALEDALL  280 (292)
Q Consensus       260 ccyakLgq~eeALe~LekAIe  280 (292)
                      -.|-++++.++|...+++-|+
T Consensus       474 kLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  474 KLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999987

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=96.86  E-value=0.0038  Score=47.43  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=45.3

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CCceEEEEeec
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g~v~l~l~r~  168 (292)
                      ..|+.|..|.+++.|+++| |++||+|+++-.      ++...+..+..++...  ..++.|.+.|.
T Consensus         9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing------~~v~~~~d~~~~l~~~~~g~~v~l~v~r~   68 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSING------TPITTLEDFMEALKPTKPGEVITVTVLPS   68 (79)
T ss_pred             CCcEEEEEECCCChHHhcC-CCCCCEEEEECC------EEcCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            4579999999999999999 999999999743      4555666667777653  35678888874

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.86  E-value=0.0004  Score=69.79  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQVKAGLSALEDALL  280 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~---a~a~YN~AccyakLgq~eeALe~LekAIe  280 (292)
                      ++|+.||-+|+|+.||..-+.-|++...+.|.   .-+|.|++.||.-+|+++.|+++|++++.
T Consensus       200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence            88999999999999999999999877665443   35799999999999999999999998743

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.85  E-value=0.0023  Score=43.54  Aligned_cols=40  Identities=20%  Similarity=0.097  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      .+.+|..+...|++++|++.|+++|+.+|++   ..+|+.+|-
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La~   43 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhhh
Confidence            4578889999999999999999999999974   346777663

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.83  E-value=0.0036  Score=67.13  Aligned_cols=67  Identities=19%  Similarity=0.335  Sum_probs=59.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ++.+.+|...|+|.+|+..|.......+..  ....||++|.||..+|.+++|+++++++|.+..++..
T Consensus       418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D  484 (895)
T KOG2076|consen  418 LDLADALTNIGKYKEALRLLSPITNREGYQ--NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD  484 (895)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHhcCcccc--chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence            488889999999999999999999887763  3678999999999999999999999999999877554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.83  E-value=0.0028  Score=62.68  Aligned_cols=65  Identities=22%  Similarity=0.303  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..+++|..++-.|+|.+|+..|..|++.+|++   ..++|-+|.+|.-+|+-..||.+|++.|++-.+
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~---Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD  104 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEGDPNN---YQAIFRRATVYLAMGKSKAALQDLSRVLELKPD  104 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc
Confidence            34688999999999999999999999999974   467899999999999999999999999888654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.82  E-value=0.0062  Score=57.42  Aligned_cols=94  Identities=14%  Similarity=0.149  Sum_probs=73.4

Q ss_pred             HHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          183 IIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       183 ~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      ..|++++.|+...++.+++++     -.+.++.-+.+ -+|.+|-+.|++++|-..|.+|+++.|+.   ..+..|++..
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA-----~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---p~~~nNlgms  177 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKA-----ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE---PSIANNLGMS  177 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHH-----hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC---chhhhhHHHH
Confidence            468888888888777777654     22233332333 78999999999999999999999999974   3468999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCcc
Q 022783          262 YSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~~  284 (292)
                      |...|+++.|...+..|...+-.
T Consensus       178 ~~L~gd~~~A~~lll~a~l~~~a  200 (257)
T COG5010         178 LLLRGDLEDAETLLLPAYLSPAA  200 (257)
T ss_pred             HHHcCCHHHHHHHHHHHHhCCCC
Confidence            99999999999999999877654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.78  E-value=0.0077  Score=53.42  Aligned_cols=96  Identities=15%  Similarity=0.228  Sum_probs=66.3

Q ss_pred             HHhhccccchhhHHHHHHH-hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ-NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      ...++.|+...++..++.- ..+..+..-  ....+..|..+|+.|+|++|+..|++-+...|+.+....++|.+|.|+.
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a--~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYA--PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            4566777777766666552 111111111  1345799999999999999999999999999998777889999999987


Q ss_pred             hcC-----------CHHHHHHHHHHHHHhC
Q 022783          264 KLN-----------QVKAGLSALEDALLAG  282 (292)
Q Consensus       264 kLg-----------q~eeALe~LekAIelG  282 (292)
                      .+.           ...+|+..+++-|+.=
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~y  120 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIKRY  120 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence            764           2347888888888763

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.77  E-value=0.0047  Score=57.95  Aligned_cols=106  Identities=18%  Similarity=0.145  Sum_probs=83.8

Q ss_pred             ccccHHHHHHHhhccccchhhHHHHHHHhhHH--HHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchh
Q 022783          176 GELSEKEIIRAERNSGVISNRVREIQMQNYMK--KKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESS  252 (292)
Q Consensus       176 ~~~~e~~~~~a~rN~GvI~~~l~eiqea~Y~k--kk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a  252 (292)
                      +++|..|.-+-+|..||+...+.--..+-|..  ...+.+.-.+.| -+|+=+...|+|+.|++.|+..+++||.+   -
T Consensus        57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~  133 (297)
T COG4785          57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---N  133 (297)
T ss_pred             ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---h
Confidence            57787777778899999999888777764444  433333334445 78999999999999999999999999985   3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       253 ~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .++-|++..+.--|+++-|.+++.+=-.....
T Consensus       134 Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~  165 (297)
T COG4785         134 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN  165 (297)
T ss_pred             HHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence            46999999999999999999999876555444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.77  E-value=0.0026  Score=40.14  Aligned_cols=30  Identities=30%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          254 ASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      +|+++|.+|..+|++++|++++++|+++-.
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            577777777777777777777777777643

...

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.0057  Score=58.21  Aligned_cols=66  Identities=21%  Similarity=0.292  Sum_probs=46.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHc--------CCCCcc-------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLG--------SKPTPE-------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALe--------ldP~~~-------d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+||.+|++|+|.||..+|..||.        ..|..+       ....++-|.|-|+...|+|-+++++|...+..-.+
T Consensus       183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~  262 (329)
T KOG0545|consen  183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG  262 (329)
T ss_pred             HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence            778888888888888888888762        234321       12456778888888888888888888887777555


Q ss_pred             C
Q 022783          285 D  285 (292)
Q Consensus       285 D  285 (292)
                      +
T Consensus       263 n  263 (329)
T KOG0545|consen  263 N  263 (329)
T ss_pred             h
Confidence            4

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=96.72  E-value=0.0055  Score=45.40  Aligned_cols=56  Identities=21%  Similarity=0.474  Sum_probs=44.0

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-CCceEEEEeec
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR  168 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g~v~l~l~r~  168 (292)
                      .+.|..|.+++.|+++| |++||+|+.+-.      ++..++..+.+.+... ...+.+.+.|.
T Consensus        13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing------~~i~~~~~~~~~l~~~~~~~~~l~v~r~   69 (79)
T cd00989          13 EPVIGEVVPGSPAAKAG-LKAGDRILAING------QKIKSWEDLVDAVQENPGKPLTLTVERN   69 (79)
T ss_pred             CcEEEeECCCCHHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHHCCCceEEEEEEEC
Confidence            58999999999999999 999999999864      3555566666777654 44678888773

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.71  E-value=0.0074  Score=61.77  Aligned_cols=96  Identities=17%  Similarity=0.075  Sum_probs=69.7

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCCccc
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERR---------EQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEE  250 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~---------~~~~n~G~~L~k~gdYeeAIe~fekALel-----dP~~~d  250 (292)
                      +.|.++.+.+...+.++  .+.++..+..+.         ....+.+.++..+++|++|+..|.+++++     .+++..
T Consensus       286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~  365 (508)
T KOG1840|consen  286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN  365 (508)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence            45666666666666664  444444444431         12238899999999999999999999953     233324


Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          251 SSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       251 ~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .+..+.|+|-+|.++|++++|.+.+++||..-
T Consensus       366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  366 LAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            56779999999999999999999999998763

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.64  E-value=0.01  Score=55.11  Aligned_cols=63  Identities=16%  Similarity=0.212  Sum_probs=48.3

Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHcC---CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          219 LREGLQLYRT-GKYEVAREKFESVLGS---KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       219 ~n~G~~L~k~-gdYeeAIe~fekALel---dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+.|..|.+. |++++|++.|++|+++   +.........+-++|.++.++|+|++|++.+++.+..
T Consensus       118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4778877777 8999999999999954   2222344667889999999999999999999998764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.64  E-value=0.0082  Score=56.63  Aligned_cols=62  Identities=18%  Similarity=0.158  Sum_probs=56.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      -.|..++..|+|.+|+..+.++..++|++   ..+|.-++.||.++|+.++|-..+.+|+++-..
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRFDEARRAYRQALELAPN  166 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence            48999999999999999999999999984   457999999999999999999999999998543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.61  E-value=0.0025  Score=40.20  Aligned_cols=31  Identities=32%  Similarity=0.358  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT  247 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~  247 (292)
                      .++.+|..+.++|++++|++.|+++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3568999999999999999999999999985

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.61  E-value=0.012  Score=58.35  Aligned_cols=57  Identities=26%  Similarity=0.342  Sum_probs=51.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI  279 (292)
                      ..+.-|.+.++|+.|+++..+|.++.|+.   ...||.+|-||..+|+++.||..|+-+=
T Consensus       239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  239 LQAEFLLSKKKYELALEIAKKAVELSPSE---FETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            66777889999999999999999999973   4579999999999999999999998763

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.60  E-value=0.0041  Score=40.82  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          254 ASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +|.|+|.+|..+|++++|++.+++|+.+-
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47888999999999999999999977653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.47  E-value=0.0031  Score=45.13  Aligned_cols=58  Identities=22%  Similarity=0.303  Sum_probs=40.0

Q ss_pred             HhhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 022783          186 AERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~  248 (292)
                      .++..|+...++..++     +.....+.. .-.+.+|.+++..|+|++|+..|+++++++|++
T Consensus         6 ~~~~~g~~~~A~~~~~-----~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFE-----QALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHCTHHHHHHHHHH-----HHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHcCCHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4455555555544443     343333433 345699999999999999999999999999974

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.43  E-value=0.03  Score=54.55  Aligned_cols=60  Identities=18%  Similarity=0.239  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+-.|..+...++|++|.+.|+++++.+|++    ..+.-+|.++.++|+.++|..++.+++.+
T Consensus       331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~----~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDA----YDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4688999999999999999999999999973    34677999999999999999999999875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.34  E-value=0.014  Score=46.02  Aligned_cols=60  Identities=22%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             HHHcCCHHHHHHHHHHHHcCCCCcc------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          225 LYRTGKYEVAREKFESVLGSKPTPE------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       225 L~k~gdYeeAIe~fekALeldP~~~------d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..+.++|.+|++.+.+.++......      ....++.|+|.++..+|++++|+..+++||++--+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3578999999999888886543321      23567899999999999999999999999887543

>PRK11906 transcriptional regulator; Provisional

Probab=96.29  E-value=0.016  Score=58.57  Aligned_cols=63  Identities=14%  Similarity=0.057  Sum_probs=57.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      +..|.++.-.++++.|+..|++|+.++|+   .+.+||..|..+...|+.++|++++++|+.+.+.
T Consensus       342 ~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        342 AIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            47788888889999999999999999997   4678999999999999999999999999998653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.01  Score=61.34  Aligned_cols=71  Identities=21%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCC----CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSK----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI  289 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeld----P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I  289 (292)
                      -++|+..|+.+.|.+|+.+|.++|+.-    +...--...+.|++..|-+++++++||..+++||.+-..|....
T Consensus       418 ~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~  492 (611)
T KOG1173|consen  418 HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH  492 (611)
T ss_pred             hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH
Confidence            378888899999999999999998322    22111134699999999999999999999999999987776543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.28  E-value=0.0068  Score=44.79  Aligned_cols=34  Identities=29%  Similarity=0.310  Sum_probs=29.7

Q ss_pred             chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          250 ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       250 d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      +.+.+|+|+|++|..+|++++|++.+++|+++ .+
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~   36 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDI-EE   36 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Confidence            45678999999999999999999999999987 54

...

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.27  E-value=0.013  Score=62.33  Aligned_cols=68  Identities=25%  Similarity=0.260  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---------------------------------cchhHHHHHHHHHHH
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP---------------------------------EESSVASYNVACCYS  263 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~---------------------------------~d~a~a~YN~Accya  263 (292)
                      .++..|..+-..|.++||.+.|..|+.+||+.                                 +....+||++||++-
T Consensus       686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k  765 (799)
T KOG4162|consen  686 VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK  765 (799)
T ss_pred             HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            44577888888888888888888888888874                                 112568999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCcc
Q 022783          264 KLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~  284 (292)
                      ++|+.++|.+|++-|+++--.
T Consensus       766 ~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  766 KLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             HccchHHHHHHHHHHHhhccC
Confidence            999999999999999988643

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.27  E-value=0.017  Score=59.25  Aligned_cols=64  Identities=19%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      +.++.-+...|+|++|++..++||+..|+.   ..+|+-+|-+|.++|++++|.++++.|-++...|
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            478888889999999999999999999984   4579999999999999999999999998886554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.23  E-value=0.027  Score=61.34  Aligned_cols=63  Identities=8%  Similarity=0.033  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +-.+.+|..|-++|++++|+..|+++|+++|++   ..+..|.|..|+.. ++++|++.+.+|++.-
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDN---PEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            445799999999999999999999999999974   56799999999999 9999999999998873

>smart00028 TPR Tetratricopeptide repeats

Probab=96.16  E-value=0.0093  Score=34.16  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPT  247 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~  247 (292)
                      .+++|..++..++|++|+.+|+++++++|+
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            357788888888888888888888888774

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.15  E-value=0.01  Score=34.02  Aligned_cols=31  Identities=32%  Similarity=0.330  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          253 VASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       253 ~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .+|+++|.||..++++++|+.++++++++..
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3699999999999999999999999998754

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=96.13  E-value=0.016  Score=55.40  Aligned_cols=66  Identities=21%  Similarity=0.357  Sum_probs=47.9

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhcc-CCceEEEEeec
Q 022783           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQR-VGPLLMKMQKR  168 (292)
Q Consensus        95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r-~g~v~l~l~r~  168 (292)
                      +|+.+... ++++.|..|.+++.|+++| |++||+|+++...      +..+  +..+...++.. ..++.|++.|.
T Consensus        53 lG~~~~~~-~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  121 (334)
T TIGR00225        53 IGIQVGMD-DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGK------SVAGMSLDDAVALIRGKKGTKVSLEILRA  121 (334)
T ss_pred             EEEEEEEE-CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHhccCCCCCEEEEEEEeC
Confidence            78888763 6799999999999999999 9999999998642      2222  23444555543 33577888775

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.12  E-value=0.0033  Score=41.24  Aligned_cols=29  Identities=28%  Similarity=0.244  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKP  246 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP  246 (292)
                      +.++|.++.+.|+|++|+++|+++|++..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            35899999999999999999999775543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.11  E-value=0.033  Score=44.12  Aligned_cols=66  Identities=17%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ...++.|+.||...+.++||.++.+||+.-++.++.-.++=.++-+|...|+|+++|+..-+=|++
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455799999999999999999999999887777677667778888999999999999876665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.09  E-value=0.043  Score=50.99  Aligned_cols=65  Identities=14%  Similarity=0.157  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCC---CCccchhHHHHHHHHHHHhc-CCHHHHHHHHHHHHHh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSK---PTPEESSVASYNVACCYSKL-NQVKAGLSALEDALLA  281 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeld---P~~~d~a~a~YN~AccyakL-gq~eeALe~LekAIel  281 (292)
                      ..+..+-..++..++++|+++|++|+++-   -++...+.++.++|-.|-.. |++++|++.+++|+++
T Consensus        76 ~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   76 KAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44556666667779999999999999632   22234577899999999998 9999999999999987

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.0074  Score=60.04  Aligned_cols=55  Identities=24%  Similarity=0.309  Sum_probs=46.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCC-CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeld-P~~~d~a~a~YN~AccyakLgq~eeALe~LekA  278 (292)
                      =.|--+|.+|+|++|++.|+-+.+.+ |+    +.+|.|+|||+.-+|+|.+|-..-.+|
T Consensus        62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~----~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   62 WIAHCYFHLGDYEEALNVYTFLMNKDDAP----AELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhccCCCC----cccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            45667799999999999999998633 32    567999999999999999998877765

>PRK11186 carboxy-terminal protease; Provisional

Probab=96.08  E-value=0.015  Score=61.33  Aligned_cols=72  Identities=22%  Similarity=0.328  Sum_probs=52.1

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhccCC-ceEEEEeec
Q 022783           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVG-PLLMKMQKR  168 (292)
Q Consensus        95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r~g-~v~l~l~r~  168 (292)
                      +|+.+.. .+|+++|..|.|||.|++++.|++||+|++|.. =|.++.+..+  +..+...|+...| .|.|++.|.
T Consensus       246 IGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~-~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        246 IGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQ-DGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             EEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEECC-CCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            4788866 467899999999999999955999999999972 1233443332  2357778885544 468888874

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=96.04  E-value=0.014  Score=61.69  Aligned_cols=80  Identities=15%  Similarity=0.183  Sum_probs=62.0

Q ss_pred             hhHHHHHhhHhHHHH--HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          204 NYMKKKEQKERREQD--LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~--~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .|-++.++.++...-  .-.|...+..++|++|.++++..++++|-.   -..||+++||..++++++.|++++..++.+
T Consensus       472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---~~~wf~~G~~ALqlek~q~av~aF~rcvtL  548 (777)
T KOG1128|consen  472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ---LGTWFGLGCAALQLEKEQAAVKAFHRCVTL  548 (777)
T ss_pred             HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc---hhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence            444555555544111  244555577899999999999999999962   346999999999999999999999999998


Q ss_pred             CccCh
Q 022783          282 GYEDF  286 (292)
Q Consensus       282 G~~Df  286 (292)
                      -++.+
T Consensus       549 ~Pd~~  553 (777)
T KOG1128|consen  549 EPDNA  553 (777)
T ss_pred             CCCch
Confidence            77643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.03  E-value=0.0075  Score=54.99  Aligned_cols=60  Identities=20%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ...|..++.+|++++|+..|++++..+|++   ...+.+.|-++...|+.++|+....+|++.
T Consensus       218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d---~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  218 DALAAAYLQLGRYEEALEYLEKALKLNPDD---PLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT------------------
T ss_pred             HHHHHHhccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence            378999999999999999999999999974   356889999999999999999999998653

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=95.89  E-value=0.03  Score=42.02  Aligned_cols=55  Identities=20%  Similarity=0.399  Sum_probs=42.2

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeec
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~  168 (292)
                      |+.|..|.+++.|+. | |++||+|+.+-.      ++...+..+..++.. + ...+.+.+.|.
T Consensus         9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~~~v~l~v~r~   65 (79)
T cd00986           9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDG------KPFKEAEELIDYIQSKKEGDTVKLKVKRE   65 (79)
T ss_pred             CEEEEEECCCCchhh-C-CCCCCEEEEECC------EECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            699999999998885 7 999999999853      455556667777764 3 34678888874

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.88  E-value=0.012  Score=58.05  Aligned_cols=90  Identities=12%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             chhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHH
Q 022783          193 ISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG  271 (292)
Q Consensus       193 I~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeA  271 (292)
                      .+..-.|+..-.|.+....-.+.-+.| |.|+--+-.++|+-++.+|++||..--++++.+..|||++.+..-.|++..|
T Consensus       335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA  414 (478)
T KOG1129|consen  335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA  414 (478)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence            333334444455655555555555554 8888888888999999999998865444446777888888888888888888


Q ss_pred             HHHHHHHHHhC
Q 022783          272 LSALEDALLAG  282 (292)
Q Consensus       272 Le~LekAIelG  282 (292)
                      -.++.-|+-..
T Consensus       415 ~rcfrlaL~~d  425 (478)
T KOG1129|consen  415 KRCFRLALTSD  425 (478)
T ss_pred             HHHHHHHhccC
Confidence            88888777554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.83  E-value=0.02  Score=36.90  Aligned_cols=29  Identities=31%  Similarity=0.332  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          253 VASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       253 ~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .++.|+|.+|..+|++++|+..+++|+++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46899999999999999999999999876

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.83  E-value=0.053  Score=51.18  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       214 ~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ...++++.|+...+.|+|++|++.|++.....|..+....+....+-+|.+.+++++|+..+++=|.+-+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP  102 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP  102 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence            3467789999999999999999999999988888666677899999999999999999999999888743

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.035  Score=52.56  Aligned_cols=96  Identities=14%  Similarity=0.114  Sum_probs=78.2

Q ss_pred             HHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      .+-.+|.-.+-+++- -....|.++..+.+..-.++ |+++.+++.++|+.+.+--.+||+++|+   ...++|-++.|.
T Consensus        13 lkE~gnk~f~~k~y~-~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~h~flg~~~   88 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYD-DAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKAHYFLGQWL   88 (284)
T ss_pred             HHhccccccchhhhc-hHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHHHHHHHHHH
Confidence            444455555544432 23348888887777766666 9999999999999999999999999997   467899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCc
Q 022783          263 SKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~  283 (292)
                      .....+++||.+|.+|..++-
T Consensus        89 l~s~~~~eaI~~Lqra~sl~r  109 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLLR  109 (284)
T ss_pred             HhhccccHHHHHHHHHHHHHh
Confidence            999999999999999988863

>TIGR00540 hemY_coli hemY protein

Probab=95.76  E-value=0.072  Score=51.92  Aligned_cols=58  Identities=14%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHH--HHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          220 REGLQLYRTGKYEVAREKFE--SVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fe--kALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..|-.++++|+|++|.+.|+  ++++.+|++    ..+..+|-++.++|+.++|.+.+++++.+
T Consensus       340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~----~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDA----NDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhHHhhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            78999999999999999999  688888974    23558899999999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.74  E-value=0.047  Score=51.76  Aligned_cols=55  Identities=22%  Similarity=0.279  Sum_probs=43.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHH-HHHH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS-ALED  277 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe-~Lek  277 (292)
                      -.++....+|+|++|.+.+++||+.+|++   ..++.|+++|...+|+..++.+ .+.+
T Consensus       206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~---~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  206 GLAVCHLQLGHYEEAEELLEEALEKDPND---PDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHCCC-CCH---HHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            67888899999999999999999999984   3468999999999999955544 4444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.70  E-value=0.013  Score=63.63  Aligned_cols=78  Identities=23%  Similarity=0.297  Sum_probs=56.1

Q ss_pred             HhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       203 a~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +.|.++....+.. +-+--.|..|...|++.+|+++|.++.+-=-++   ...|-|+|.||..+|+|-.||+.++.+++-
T Consensus       633 q~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~---~dv~lNlah~~~e~~qy~~AIqmYe~~lkk  709 (1018)
T KOG2002|consen  633 QLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF---EDVWLNLAHCYVEQGQYRLAIQMYENCLKK  709 (1018)
T ss_pred             HHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC---CceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555444433 222367888889999999999999888532221   235999999999999999999999999776


Q ss_pred             Cc
Q 022783          282 GY  283 (292)
Q Consensus       282 G~  283 (292)
                      =|
T Consensus       710 f~  711 (1018)
T KOG2002|consen  710 FY  711 (1018)
T ss_pred             hc
Confidence            44

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.69  E-value=0.069  Score=57.64  Aligned_cols=62  Identities=10%  Similarity=0.015  Sum_probs=48.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      -.|..+..+|+|++|++.|+++++.+|++   ..+++-++..|..+++.++|++.+++++..-.+
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPT  168 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence            45667778888888888888888888874   345667788888888888888888888776544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.64  E-value=0.087  Score=56.92  Aligned_cols=100  Identities=15%  Similarity=0.139  Sum_probs=73.7

Q ss_pred             hccccchhhHHHHHHH--hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          188 RNSGVISNRVREIQMQ--NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       188 rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      +..|.|..-+..++.+  +...+.-++++..++ +..+...-++|.+++|+-+|++||..+|.+   -...|+++-.|-+
T Consensus       177 ~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n---~~~~~ers~L~~~  253 (895)
T KOG2076|consen  177 YTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN---WELIYERSSLYQK  253 (895)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHH
Confidence            3445555444444443  444455555555444 578888888999999999999999999974   3458999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCc-cChhhhh
Q 022783          265 LNQVKAGLSALEDALLAGY-EDFKVIY  290 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~-~Df~~Ir  290 (292)
                      +|+...|++.+.+.+.+-. .||++|.
T Consensus       254 ~G~~~~Am~~f~~l~~~~p~~d~er~~  280 (895)
T KOG2076|consen  254 TGDLKRAMETFLQLLQLDPPVDIERIE  280 (895)
T ss_pred             hChHHHHHHHHHHHHhhCCchhHHHHH
Confidence            9999999999999977754 5777663

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=95.63  E-value=0.035  Score=55.27  Aligned_cols=82  Identities=18%  Similarity=0.373  Sum_probs=59.2

Q ss_pred             ceEEEEecCCc---eeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC-c
Q 022783           85 EEYEVEIEQPY---GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-P  160 (292)
Q Consensus        85 ~~~~v~l~KPl---Gl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g-~  160 (292)
                      ..+..++...+   |+.+...+++++.|.++.+++-|+|+| |++||+|+.+-   |..+-.. .+..+...||.+.| +
T Consensus        89 ~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~Id---G~~~~~~-~~~~av~~irG~~Gt~  163 (406)
T COG0793          89 AEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKID---GKSVGGV-SLDEAVKLIRGKPGTK  163 (406)
T ss_pred             HHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEEC---CEEccCC-CHHHHHHHhCCCCCCe
Confidence            34455555544   477777666999999999999999999 99999999988   3222111 22456678887665 5


Q ss_pred             eEEEEeeccCC
Q 022783          161 LLMKMQKRYGK  171 (292)
Q Consensus       161 v~l~l~r~~~~  171 (292)
                      |.|++.|.-+.
T Consensus       164 V~L~i~r~~~~  174 (406)
T COG0793         164 VTLTILRAGGG  174 (406)
T ss_pred             EEEEEEEcCCC
Confidence            79999998434

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.63  E-value=0.01  Score=60.59  Aligned_cols=57  Identities=16%  Similarity=0.292  Sum_probs=48.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA  278 (292)
                      .|.|++.|..|+|++|.+.|.+||..+..   ...++||++..+..+|++++||+++-+-
T Consensus       494 ~nkgn~~f~ngd~dka~~~ykeal~ndas---c~ealfniglt~e~~~~ldeald~f~kl  550 (840)
T KOG2003|consen  494 TNKGNIAFANGDLDKAAEFYKEALNNDAS---CTEALFNIGLTAEALGNLDEALDCFLKL  550 (840)
T ss_pred             hcCCceeeecCcHHHHHHHHHHHHcCchH---HHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence            38889999999999999999999987663   4567999999999999999999988663

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.57  E-value=0.032  Score=37.85  Aligned_cols=34  Identities=26%  Similarity=0.233  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          254 ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      +|+.+|-+|..+|++++|++.|+++|+..++|..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~   36 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE   36 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            6999999999999999999999999999888754

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=95.51  E-value=0.023  Score=58.31  Aligned_cols=75  Identities=23%  Similarity=0.403  Sum_probs=58.9

Q ss_pred             cCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccC
Q 022783           92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG  170 (292)
Q Consensus        92 ~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~  170 (292)
                      .-|||+++....++.++|+.|..||.++++|.+.+||.|..+-.+-    ......-++...++.-.|++++++-=.+.
T Consensus       133 ~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~----v~~~~~~e~q~~l~~~~G~itfkiiP~~~  207 (542)
T KOG0609|consen  133 GEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGIS----VANKSPEELQELLRNSRGSITFKIIPSYR  207 (542)
T ss_pred             CCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCee----cccCCHHHHHHHHHhCCCcEEEEEccccc
Confidence            4589999998777799999999999999999999999999876421    12234556777888767999988744433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.47  E-value=0.06  Score=51.03  Aligned_cols=65  Identities=20%  Similarity=0.293  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..|=+|..+|.+|+|++|...|..+..-.|+......+++-+|.|...+|+.++|...|++.++.
T Consensus       180 A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         180 AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            34667889999999999999999999888887667788999999999999999999999998876

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=95.46  E-value=0.039  Score=54.46  Aligned_cols=67  Identities=18%  Similarity=0.440  Sum_probs=49.4

Q ss_pred             ceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cC-Cce
Q 022783           95 YGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPL  161 (292)
Q Consensus        95 lGl~~~~~~-----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~-g~v  161 (292)
                      ||+.+..-.           ..|++|.+|.+++.|+++| |++||+|+++-.      ++.........++.. .. ..+
T Consensus       236 lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng------~~i~~~~~~~~~l~~~~~g~~v  308 (428)
T TIGR02037       236 LGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNG------KPISSFADLRRAIGTLKPGKKV  308 (428)
T ss_pred             CceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEE
Confidence            788876532           3589999999999999999 999999999763      244455555566654 23 357


Q ss_pred             EEEEeec
Q 022783          162 LMKMQKR  168 (292)
Q Consensus       162 ~l~l~r~  168 (292)
                      .+++.|.
T Consensus       309 ~l~v~R~  315 (428)
T TIGR02037       309 TLGILRK  315 (428)
T ss_pred             EEEEEEC
Confidence            8888774

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.44  E-value=0.066  Score=50.74  Aligned_cols=69  Identities=16%  Similarity=0.282  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ...++-|..+++.|||.+|...|.+-+.--|+..-...++|=++-|+..+|++++|...+..+++- |.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~  210 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPK  210 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCC
Confidence            347899999999999999999999999999987677889999999999999999999999999884 444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.43  E-value=0.16  Score=41.80  Aligned_cols=57  Identities=19%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI  279 (292)
                      ..+..+...|+|++|+....+++.++|.+   -.+|..+-.||..+|+..+|+..+++..
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALDPYD---EEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            66667889999999999999999999984   2369999999999999999999999874

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=95.42  E-value=0.038  Score=54.56  Aligned_cols=58  Identities=17%  Similarity=0.355  Sum_probs=45.8

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc--cCCceEEEEeecc
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKRY  169 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~--r~g~v~l~l~r~~  169 (292)
                      .|++|.+|.+++.|+++| +++||+|+.+..      ++..+.-+...+|+.  ..+.+.|.+.|.-
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing------~~V~s~~d~~~~l~~~~~g~~v~l~v~R~g  421 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQ------QPVSSVAELRKVLDRAKKGGRVALLILRGG  421 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999999 999999999863      345555556666663  3567899998853

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.03  Score=59.02  Aligned_cols=66  Identities=17%  Similarity=0.271  Sum_probs=57.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      +|.|-.+|+.++|..+++.|...|..=|.+   .+.+.+.-|++|||.++.|.+.|++.+++|-+...+
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~  426 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ  426 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            699999999999999999999999655542   233678999999999999999999999999887654

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=95.37  E-value=0.051  Score=53.44  Aligned_cols=69  Identities=22%  Similarity=0.351  Sum_probs=45.6

Q ss_pred             ceeEEeeeC--C---CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-CCceEEEEeec
Q 022783           95 YGLKFAKGR--D---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR  168 (292)
Q Consensus        95 lGl~~~~~~--~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g~v~l~l~r~  168 (292)
                      +|+.+....  +   .++.|..|.+++.|+++| |++||+|+++-..   .+ .......+...++.. ..+|.|++.|.
T Consensus        87 iG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~---~v-~~~~~~~~~~~l~g~~g~~v~ltv~r~  161 (389)
T PLN00049         87 VGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGT---ST-EGLSLYEAADRLQGPEGSSVELTLRRG  161 (389)
T ss_pred             EEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence            566665432  2   279999999999999999 9999999998642   11 111122344555533 34678888774

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.34  E-value=0.029  Score=34.64  Aligned_cols=28  Identities=25%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          254 ASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ++|++|.||.++|++++|++.+++.++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4677777777777777777777777665

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.29  E-value=0.02  Score=35.36  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT  247 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~  247 (292)
                      ..++.|..+++.|++++|++.|++.+..-|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3579999999999999999999999998886

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.26  E-value=0.14  Score=51.66  Aligned_cols=94  Identities=15%  Similarity=0.107  Sum_probs=65.1

Q ss_pred             HHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      |.++..|++..++..++.+.-.+..-......-.|+.|..+.-+.+|++|.++|.+-++.+.-  ..+..+|-.||||..
T Consensus       275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAACLLM  352 (468)
T ss_pred             HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHh
Confidence            455566677766666665321111111111233479999999999999999999999987654  346678999999999


Q ss_pred             cCCH-------HHHHHHHHHHHH
Q 022783          265 LNQV-------KAGLSALEDALL  280 (292)
Q Consensus       265 Lgq~-------eeALe~LekAIe  280 (292)
                      +++.       ++|.+.+.++-.
T Consensus       353 l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHHHH
Confidence            9999       677777766643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.26  E-value=0.072  Score=38.74  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~  251 (292)
                      .+..|+.+++.|+|++|....+.+|+++|++...
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            3578888888899999988888888888886443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.23  E-value=0.087  Score=53.67  Aligned_cols=63  Identities=24%  Similarity=0.258  Sum_probs=55.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      -.+.++.+.+++.+|++.|.+++.++|+   ...+++|.|-.|.+.|++++|+..|++.+....+|
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALALDPN---SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            5677889999999999999999999997   36789999999999999999999999988776554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.22  E-value=0.018  Score=58.92  Aligned_cols=91  Identities=19%  Similarity=0.297  Sum_probs=70.4

Q ss_pred             hccccchhhHHHHHHH-hhHHH------HHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHH
Q 022783          188 RNSGVISNRVREIQMQ-NYMKK------KEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (292)
Q Consensus       188 rN~GvI~~~l~eiqea-~Y~kk------k~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~A  259 (292)
                      .|+|+|.-+.+++-.+ .||+-      ++.|..+-. +-|.|+.+.+.|+|+.||..|+-.++..|+    -.+-||+-
T Consensus       241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn----~~a~~nl~  316 (840)
T KOG2003|consen  241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN----FIAALNLI  316 (840)
T ss_pred             eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc----HHhhhhhh
Confidence            3778888777777776 33332      222222212 228899999999999999999999999998    35789999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhC
Q 022783          260 CCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       260 ccyakLgq~eeALe~LekAIelG  282 (292)
                      .|+.-+|+-++--+++.+-|.+-
T Consensus       317 i~~f~i~d~ekmkeaf~kli~ip  339 (840)
T KOG2003|consen  317 ICAFAIGDAEKMKEAFQKLIDIP  339 (840)
T ss_pred             hhheecCcHHHHHHHHHHHhcCC
Confidence            99999999999999999988763

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=95.18  E-value=0.1  Score=51.35  Aligned_cols=62  Identities=27%  Similarity=0.342  Sum_probs=54.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +-+|......|+|+.|++.++.+++.||+.  .+.+.--+..||..+|+.++.+.-|.++++.-
T Consensus       218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~y--l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         218 IILGRVELAKGDYQKAVEALERVLEQNPEY--LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             hhhhHHHHhccchHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            466888899999999999999999999973  46667788899999999999999999998763

>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]

Probab=95.17  E-value=0.04  Score=48.98  Aligned_cols=76  Identities=25%  Similarity=0.474  Sum_probs=55.3

Q ss_pred             EEEEecCC---ceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           87 YEVEIEQP---YGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        87 ~~v~l~KP---lGl~~~~~--~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      -.|+|+|-   ||..+--+  -+--|||..|-|||-|++-|.++-||+|+.|..+-=    ....-......++.-.|+|
T Consensus        92 rvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsv----ege~hekavellkaa~gsv  167 (207)
T KOG3550|consen   92 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV----EGEHHEKAVELLKAAVGSV  167 (207)
T ss_pred             ceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceee----cchhhHHHHHHHHHhcCcE
Confidence            56888885   55554333  234899999999999999999999999999876311    1122223456788889999


Q ss_pred             EEEEe
Q 022783          162 LMKMQ  166 (292)
Q Consensus       162 ~l~l~  166 (292)
                      .|++.
T Consensus       168 klvvr  172 (207)
T KOG3550|consen  168 KLVVR  172 (207)
T ss_pred             EEEEe
Confidence            98874

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.16  E-value=0.073  Score=57.48  Aligned_cols=63  Identities=11%  Similarity=0.002  Sum_probs=41.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      .....+...|++++|+..+++++  +|++.. ..+.-..|.+|..+|++++|++.|+++++...++
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n  135 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQALALWQSSLKKDPTN  135 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            44555556677777777777777  343212 2234445667888888888888888888887665

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.12  E-value=0.12  Score=45.44  Aligned_cols=90  Identities=16%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             ccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCC-ccchhHHHHHHHHHHHhcC
Q 022783          189 NSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPT-PEESSVASYNVACCYSKLN  266 (292)
Q Consensus       189 N~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~-~~d~a~a~YN~AccyakLg  266 (292)
                      ..|.+..+|..+.     +...+-+++-+.+ |.+.++.-.|+-++|++-.++||++.-. -.-.-.+|..++..|-++|
T Consensus        55 E~g~Ld~AlE~F~-----qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   55 EAGDLDGALELFG-----QALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             hccchHHHHHHHH-----HHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            4455555544444     4444555555555 8899999999999999999999987643 2233567999999999999


Q ss_pred             CHHHHHHHHHHHHHhCc
Q 022783          267 QVKAGLSALEDALLAGY  283 (292)
Q Consensus       267 q~eeALe~LekAIelG~  283 (292)
                      +-+.|-.+++.|-++|=
T Consensus       130 ~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGS  146 (175)
T ss_pred             chHHHHHhHHHHHHhCC
Confidence            99999999999999993

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.11  E-value=0.055  Score=39.16  Aligned_cols=46  Identities=26%  Similarity=0.302  Sum_probs=35.2

Q ss_pred             hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc
Q 022783          204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (292)
Q Consensus       204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~  249 (292)
                      .+.+...+.+.. .-.+..|..+++.|+|++|++.|+++|+.+|+..
T Consensus        17 ~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen   17 VLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            333444444444 3345999999999999999999999999999853

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.01  E-value=0.14  Score=55.99  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI  289 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I  289 (292)
                      +++|.+|-.+...|+|++|-..|-+++..+|++  .-..++-++-.|.+.|+++.|+-++++.++.-...++.+
T Consensus       308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm  379 (1018)
T KOG2002|consen  308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM  379 (1018)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence            455677777777777777777777777776663  223466677777777777777777777766666555543

>PRK10139 serine endoprotease; Provisional

Probab=94.92  E-value=0.048  Score=54.85  Aligned_cols=58  Identities=14%  Similarity=0.248  Sum_probs=46.7

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      .+++|..|.+++.|+++| +++||+|+.+..      ++...+...+.+|+.+.+++.|.+.|.-
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~v~l~v~R~g  447 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNR------DRVNSIAEMRKVLAAKPAIIALQIVRGN  447 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            489999999999999999 999999999863      3555555566677766688999998854

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.88  E-value=0.058  Score=54.72  Aligned_cols=98  Identities=15%  Similarity=0.117  Sum_probs=73.6

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHh----hHhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch---h
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQ----KERR---EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES---S  252 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~l----k~~~---~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~---a  252 (292)
                      ||.-|.|+-.--+.+++.+  +|++.-.+    .+..   -+++-+|++|+-.++|++||+++.+-|.+-..-.|.   .
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~  315 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL  315 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            6667888877777777765  67665333    2222   345899999999999999999999977543321111   4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          253 VASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       253 ~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      -++|-++..|..+|.-++|+...++++++-
T Consensus       316 RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  316 RACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            579999999999999999999988887654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.71  E-value=0.067  Score=54.21  Aligned_cols=62  Identities=8%  Similarity=-0.003  Sum_probs=51.6

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhHHH----HHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERREQ----DLREGLQLYRTGKYEVAREKFESVLGSK  245 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~----~~n~G~~L~k~gdYeeAIe~fekALeld  245 (292)
                      ..+..|.|.....+++++++  .|.++.++++...+    ++|+|+.|..+|++++|+++|++||++.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            56778888888888888776  77777777776543    5799999999999999999999999973

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=94.70  E-value=0.091  Score=37.45  Aligned_cols=45  Identities=22%  Similarity=0.290  Sum_probs=34.6

Q ss_pred             hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 022783          204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (292)
Q Consensus       204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~  248 (292)
                      .|.+.....+.. .-.+..|..+++.|+|++|...+++++..+|++
T Consensus        13 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen   13 LLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            454544444444 344699999999999999999999999999984

...

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=94.68  E-value=0.078  Score=51.40  Aligned_cols=57  Identities=21%  Similarity=0.337  Sum_probs=43.5

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeec
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~  168 (292)
                      .|++|..|.+++.|+++| |++||+|+.+-.      ++..+......++.. + .+++.|++.|.
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing------~~V~s~~dl~~~l~~~~~g~~v~l~v~R~  336 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDG------KDVIGAEELMDRIAETRPGSKVMVTVLRQ  336 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            589999999999999999 999999999753      344455555566653 3 44578888884

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=94.64  E-value=0.11  Score=50.55  Aligned_cols=57  Identities=26%  Similarity=0.474  Sum_probs=41.9

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCC-ceEEEEeec
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVG-PLLMKMQKR  168 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g-~v~l~l~r~  168 (292)
                      .|++|.+|.+++.|+++| |++||+|+.+-.   .   +.......+.++.. +.| .+.|++.|.
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing---~---~V~s~~~l~~~l~~~~~g~~v~l~v~R~  337 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNN---K---PAISALETMDQVAEIRPGSVIPVVVMRD  337 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECC---E---EcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            599999999999999999 999999999753   2   33344444555543 343 478888874

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.55  E-value=0.035  Score=56.39  Aligned_cols=88  Identities=16%  Similarity=0.098  Sum_probs=74.2

Q ss_pred             HHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (292)
Q Consensus       199 eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~Lek  277 (292)
                      ......|.|+..++++.-.++ +++.++.+.++|..|+.-..+||+++|.   ...+||-+|.++..++++.+|+.+|++
T Consensus        21 d~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~Y~rrg~a~m~l~~~~~A~~~l~~   97 (476)
T KOG0376|consen   21 DVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKAYVRRGTAVMALGEFKKALLDLEK   97 (476)
T ss_pred             HHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch---hhheeeeccHHHHhHHHHHHHHHHHHH
Confidence            334458888888887665555 8889999999999999999999999996   466899999999999999999999999


Q ss_pred             HHHhCccChhhh
Q 022783          278 ALLAGYEDFKVI  289 (292)
Q Consensus       278 AIelG~~Df~~I  289 (292)
                      ...+-..|-...
T Consensus        98 ~~~l~Pnd~~~~  109 (476)
T KOG0376|consen   98 VKKLAPNDPDAT  109 (476)
T ss_pred             hhhcCcCcHHHH
Confidence            988877755443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.52  E-value=0.53  Score=36.37  Aligned_cols=58  Identities=31%  Similarity=0.393  Sum_probs=25.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       224 ~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .++..+++++|+..|++++..+|........+++.+..+...+++++|+..+.++++.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            4445555555555555554444410012223344444444444444444444444443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.43  E-value=0.94  Score=39.17  Aligned_cols=86  Identities=15%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             hhHHHHHHHhhHHHHHhhHhH--H--------HHH---HHHHHHHHcCCHHHHHHHHHHHH-------cCCCCccch-hH
Q 022783          195 NRVREIQMQNYMKKKEQKERR--E--------QDL---REGLQLYRTGKYEVAREKFESVL-------GSKPTPEES-SV  253 (292)
Q Consensus       195 ~~l~eiqea~Y~kkk~lk~~~--~--------~~~---n~G~~L~k~gdYeeAIe~fekAL-------eldP~~~d~-a~  253 (292)
                      .+..+-..++|+++......-  +        ++|   -++-++..+|+|++++..-++||       +++.+.... -.
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa  101 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA  101 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence            344444456888876654332  2        222   45667789999999999999998       566542110 22


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783          254 ASYNVACCYSKLNQVKAGLSALEDALL  280 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~LekAIe  280 (292)
                      +-+|+|..+-.+|..++|+..+..|-+
T Consensus       102 aVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen  102 AVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            458999999999999999999999955

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10942 serine endoprotease; Provisional

Probab=94.42  E-value=0.076  Score=53.74  Aligned_cols=60  Identities=18%  Similarity=0.390  Sum_probs=47.3

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccCC
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~~  171 (292)
                      .+++|.+|.+++.|+++| +++||+|+++..      ++...+.....+++....++.|++.|.-..
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg------~~V~s~~dl~~~l~~~~~~v~l~V~R~g~~  467 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQ------QPVKNIAELRKILDSKPSVLALNIQRGDSS  467 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCeEEEEEEECCEE
Confidence            479999999999999999 999999999863      345555555666666667889999886543

>PRK10139 serine endoprotease; Provisional

Probab=94.39  E-value=0.095  Score=52.77  Aligned_cols=58  Identities=16%  Similarity=0.418  Sum_probs=42.2

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCC-ceEEEEeec
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVG-PLLMKMQKR  168 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g-~v~l~l~r~  168 (292)
                      ..|++|.+|.+++.|+++| |++||+|+.+-.   .   +...+.++...|.. ++| .+.+++.|.
T Consensus       289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG---~---~V~s~~dl~~~l~~~~~g~~v~l~V~R~  348 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNG---K---PLNSFAELRSRIATTEPGTKVKLGLLRN  348 (455)
T ss_pred             CCceEEEEECCCChHHHCC-CCCCCEEEEECC---E---ECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            4589999999999999999 999999999753   2   33344455555553 333 467777774

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.33  Score=46.51  Aligned_cols=140  Identities=15%  Similarity=0.170  Sum_probs=100.1

Q ss_pred             ccccchh-hHHHHhhccCCceEEEEee----ccCCcc-ccccccHHHHHH---HhhccccchhhHHHHHHH--hhHHH--
Q 022783          142 WPAAEYG-RTMYTIRQRVGPLLMKMQK----RYGKME-QTGELSEKEIIR---AERNSGVISNRVREIQMQ--NYMKK--  208 (292)
Q Consensus       142 w~a~~~g-~~~~ai~~r~g~v~l~l~r----~~~~~~-~~~~~~e~~~~~---a~rN~GvI~~~l~eiqea--~Y~kk--  208 (292)
                      ....++| .-+..+.+.+.|+.+.++-    .+++.. ..=-+|+.|+.+   .++..|+=.-++.++.++  .|+.+  
T Consensus       127 ~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~  206 (329)
T KOG0545|consen  127 FAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAII  206 (329)
T ss_pred             HHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHH
Confidence            3344555 3456777888898776642    223332 222567777665   477777777677777765  56555  


Q ss_pred             ----HHhhHhH--HHH-----------HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHH
Q 022783          209 ----KEQKERR--EQD-----------LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG  271 (292)
Q Consensus       209 ----k~lk~~~--~~~-----------~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeA  271 (292)
                          .+++.++  .++           +|...-+...|+|-++++.-+..|..+|.+   -.|||-+|-+|+.-=+.++|
T Consensus       207 ~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n---vKA~frRakAhaa~Wn~~eA  283 (329)
T KOG0545|consen  207 CLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN---VKAYFRRAKAHAAVWNEAEA  283 (329)
T ss_pred             HHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHhhcCHHHH
Confidence                2333333  222           366677788999999999999999999985   45799999999999999999


Q ss_pred             HHHHHHHHHhCcc
Q 022783          272 LSALEDALLAGYE  284 (292)
Q Consensus       272 Le~LekAIelG~~  284 (292)
                      -.++.+++++...
T Consensus       284 ~~D~~~vL~ldps  296 (329)
T KOG0545|consen  284 KADLQKVLELDPS  296 (329)
T ss_pred             HHHHHHHHhcChh
Confidence            9999999998754

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.35  E-value=0.15  Score=52.08  Aligned_cols=73  Identities=16%  Similarity=0.091  Sum_probs=49.7

Q ss_pred             hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH-----------------hc
Q 022783          204 NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS-----------------KL  265 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya-----------------kL  265 (292)
                      .+++...+.+.... .++.|++|.+.|++++||...+..+.-+|++   ...|+.+|-+|.                 ..
T Consensus       362 ~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d---p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         362 RLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED---PNGWDLLAQAYAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence            44444444444322 3599999999999999999999999999975   233555555555                 45


Q ss_pred             CCHHHHHHHHHHHH
Q 022783          266 NQVKAGLSALEDAL  279 (292)
Q Consensus       266 gq~eeALe~LekAI  279 (292)
                      |++++|+..+.+|-
T Consensus       439 G~~~~A~~~l~~A~  452 (484)
T COG4783         439 GRLEQAIIFLMRAS  452 (484)
T ss_pred             CCHHHHHHHHHHHH
Confidence            56666666666663

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=94.34  E-value=0.14  Score=56.35  Aligned_cols=76  Identities=16%  Similarity=0.211  Sum_probs=46.2

Q ss_pred             HhhHHHHHhhHhHHHH-HHHHHHHHHcCC-HHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 022783          203 QNYMKKKEQKERREQD-LREGLQLYRTGK-YEVAREKFESVLGSKPTPEESSVASYNVACCYSK---LNQVKAGLSALED  277 (292)
Q Consensus       203 a~Y~kkk~lk~~~~~~-~n~G~~L~k~gd-YeeAIe~fekALeldP~~~d~a~a~YN~Accyak---Lgq~eeALe~Lek  277 (292)
                      ..-++.-++.++.+.+ +.+|+.+...+. .++|-+.|-.|.+++|++   ..||-.++..|.+   ...++++-.+|.+
T Consensus        23 EqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn---lLAWkGL~nLye~~~dIl~ld~~~~~yq~   99 (1238)
T KOG1127|consen   23 EQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN---LLAWKGLGNLYERYNDILDLDRAAKCYQR   99 (1238)
T ss_pred             HHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh---hHHHHHHHHHHHccchhhhhhHhHHHHHH
Confidence            3444444444444443 467777776665 777777777777777752   4566666666665   4455666667766


Q ss_pred             HHHh
Q 022783          278 ALLA  281 (292)
Q Consensus       278 AIel  281 (292)
                      ++.+
T Consensus       100 ~~l~  103 (1238)
T KOG1127|consen  100 AVLI  103 (1238)
T ss_pred             HHHh
Confidence            6554

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=94.33  E-value=0.16  Score=54.14  Aligned_cols=88  Identities=23%  Similarity=0.402  Sum_probs=64.2

Q ss_pred             ccccccceEEEEecC-C--ceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783           79 EQEEKYEEYEVEIEQ-P--YGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (292)
Q Consensus        79 ~~~~~~~~~~v~l~K-P--lGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a  153 (292)
                      .-.++.+-|.|+|+| +  .|..+--++.+  ..||-.+.++|-|.+.|.++|||+|+-+..    |--.-..-.+.+..
T Consensus       892 r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eING----esTkgmtH~rAIel  967 (984)
T KOG3209|consen  892 RMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEING----ESTKGMTHDRAIEL  967 (984)
T ss_pred             cccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecC----cccCCCcHHHHHHH
Confidence            345677889999986 3  34444444433  899999999999999999999999998653    22222233466778


Q ss_pred             hhccCCceEEEEeeccC
Q 022783          154 IRQRVGPLLMKMQKRYG  170 (292)
Q Consensus       154 i~~r~g~v~l~l~r~~~  170 (292)
                      |++..--|.|.|.|+.|
T Consensus       968 Ik~gg~~vll~Lr~g~g  984 (984)
T KOG3209|consen  968 IKQGGRRVLLLLRRGTG  984 (984)
T ss_pred             HHhCCeEEEEEeccCCC
Confidence            88887778888888654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.31  E-value=0.3  Score=47.62  Aligned_cols=61  Identities=13%  Similarity=0.033  Sum_probs=47.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ..+..+...|+|++|+..+++.++.+|++   ..++.-.+-+|...|+|++|++.+.+..+.+-
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence            44667778888888888888888888874   34577778888888888888877777766553

>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]

Probab=94.25  E-value=0.069  Score=58.45  Aligned_cols=51  Identities=31%  Similarity=0.601  Sum_probs=41.8

Q ss_pred             ceEEEEecCCcee----EEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783           85 EEYEVEIEQPYGL----KFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (292)
Q Consensus        85 ~~~~v~l~KPlGl----~~~~~~~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa  135 (292)
                      +-..|+|+|==||    +-+++..   -||||..|++||.|+..|.++.||+|+.|-.
T Consensus       933 ei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG  990 (1629)
T KOG1892|consen  933 EIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDG  990 (1629)
T ss_pred             ceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecC
Confidence            4688999998663    4455422   2999999999999999999999999998864

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=94.22  E-value=0.087  Score=55.92  Aligned_cols=74  Identities=20%  Similarity=0.365  Sum_probs=62.5

Q ss_pred             ecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccC
Q 022783           91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG  170 (292)
Q Consensus        91 l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~  170 (292)
                      ...|.||+|.++...-|-|..|.|..-|+|+. +++||+|+|+-.      .|.....|+-..++.-.|+|....+|..-
T Consensus       384 ~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~------~pi~s~~q~~~~~~s~~~~~~~l~~~~~~  456 (1051)
T KOG3532|consen  384 VSSPIGLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINN------VPIRSERQATRFLQSTTGDLTVLVERSLD  456 (1051)
T ss_pred             ccCceeEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEecC------ccchhHHHHHHHHHhcccceEEEEeeccc
Confidence            35799999999888899999999999999998 999999999763      57777777778888888999877777443


Q ss_pred             C
Q 022783          171 K  171 (292)
Q Consensus       171 ~  171 (292)
                      +
T Consensus       457 ~  457 (1051)
T KOG3532|consen  457 D  457 (1051)
T ss_pred             c
Confidence            3

>PRK10942 serine endoprotease; Provisional

Probab=94.08  E-value=0.15  Score=51.54  Aligned_cols=58  Identities=17%  Similarity=0.375  Sum_probs=42.4

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CCceEEEEeec
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g~v~l~l~r~  168 (292)
                      ..|++|..|.+++.|+++| |+.||+|+.+..      .+...+.....++...  ...+.|++.|.
T Consensus       310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG------~~V~s~~dl~~~l~~~~~g~~v~l~v~R~  369 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNG------KPISSFAALRAQVGTMPVGSKLTLGLLRD  369 (473)
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            3599999999999999999 999999999753      2344455555555432  33567777764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.92  E-value=0.52  Score=41.56  Aligned_cols=64  Identities=14%  Similarity=0.011  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA  278 (292)
                      +....++|.-+++-|++++|+++|.++.+..-.....-..+.|+-.+...++++......+++|
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3455699999999999999999999999887665555667999999999999999999999999

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.85  E-value=0.21  Score=47.68  Aligned_cols=65  Identities=28%  Similarity=0.279  Sum_probs=38.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCcc-------------------------------chhHHHHHHHHHHHhcCCH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------ESSVASYNVACCYSKLNQV  268 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~-------------------------------d~a~a~YN~AccyakLgq~  268 (292)
                      -.|+.|--.|+|++|++.|+.-|+-||++.                               ....+|.-+|-.|..+|++
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f  170 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF  170 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence            345555555666666666666666666530                               0134566666666666666


Q ss_pred             HHHHHHHHHHHHhCcc
Q 022783          269 KAGLSALEDALLAGYE  284 (292)
Q Consensus       269 eeALe~LekAIelG~~  284 (292)
                      ++|.=|+++.+-+.+-
T Consensus       171 ~kA~fClEE~ll~~P~  186 (289)
T KOG3060|consen  171 EKAAFCLEELLLIQPF  186 (289)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            6666666666655443

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=93.84  E-value=0.19  Score=50.22  Aligned_cols=58  Identities=19%  Similarity=0.467  Sum_probs=45.4

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC-CceEEEEeeccC
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRYG  170 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~-g~v~l~l~r~~~  170 (292)
                      ++.|.+|.+++.|+++| +++||+|+++..      ++..+..++..+++.+. .++.+.++|.-.
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing------~~V~s~~dl~~~l~~~~~~~v~l~v~R~g~  280 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDG------QPLTQWQTFVTLVRDNPGKPLALEIERQGS  280 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCCEEEEEEEECCE
Confidence            58999999999999999 999999999853      35566666666776554 467888887543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.83  E-value=0.35  Score=49.23  Aligned_cols=67  Identities=10%  Similarity=-0.058  Sum_probs=59.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhhh
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIY  290 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~Ir  290 (292)
                      ..+..+..+|+|+++|...+++|...|+    -.+|..+|-++.-.+++++|++.+..|+.+.+.|-..++
T Consensus       443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D----~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~  509 (564)
T KOG1174|consen  443 LIAELCQVEGPTKDIIKLLEKHLIIFPD----VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR  509 (564)
T ss_pred             HHHHHHHhhCccchHHHHHHHHHhhccc----cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence            5566778899999999999999999997    358999999999999999999999999999988765543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.72  E-value=0.43  Score=47.59  Aligned_cols=69  Identities=12%  Similarity=-0.016  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~  288 (292)
                      ..+-.+..+...++..+|+...+++|..+|..   +.++.-.|-++...++++.|+..+++|+++-+.+|+.
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~  270 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFET  270 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHH
Confidence            34466777778899999999999999998873   5678889999999999999999999999999988753

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.71  E-value=0.98  Score=43.51  Aligned_cols=108  Identities=20%  Similarity=0.223  Sum_probs=75.1

Q ss_pred             ccccHHHHHHHhhccccchhhHHHHHHH-------hhHHHHHhhHh-HHHH-H-HHHHHHHH----cCCHHHHHHHHHHH
Q 022783          176 GELSEKEIIRAERNSGVISNRVREIQMQ-------NYMKKKEQKER-REQD-L-REGLQLYR----TGKYEVAREKFESV  241 (292)
Q Consensus       176 ~~~~e~~~~~a~rN~GvI~~~l~eiqea-------~Y~kkk~lk~~-~~~~-~-n~G~~L~k----~gdYeeAIe~fekA  241 (292)
                      ++..|+  ++++--.+.++...-.++.-       .+.+.-+.-.+ .+++ + .+|..+.+    .+++++|.=+|++-
T Consensus       122 ~~~deA--l~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~  199 (299)
T KOG3081|consen  122 GDFDEA--LKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL  199 (299)
T ss_pred             CChHHH--HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence            445555  66666667776665555551       22221111111 1233 3 57777744    36799999999998


Q ss_pred             Hc-CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783          242 LG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI  289 (292)
Q Consensus       242 Le-ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I  289 (292)
                      -+ ..|+    ..+....|||+..+++|++|...|+.|++--+.|.+.+
T Consensus       200 s~k~~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL  244 (299)
T KOG3081|consen  200 SEKTPPT----PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL  244 (299)
T ss_pred             hcccCCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence            87 7776    56799999999999999999999999999988887654

>TIGR00540 hemY_coli hemY protein

Probab=93.70  E-value=0.43  Score=46.54  Aligned_cols=61  Identities=15%  Similarity=0.092  Sum_probs=52.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       221 ~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+..+...|+|++|+..+++.++..|++   ..+++-.+-+|..+|++++|++.+.+.++.+-.
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~---~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~  219 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEMAPRH---KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF  219 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            4777788999999999999999999974   346888999999999999999999999987643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]

Probab=93.64  E-value=0.064  Score=44.70  Aligned_cols=32  Identities=28%  Similarity=0.650  Sum_probs=29.1

Q ss_pred             CCCCeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783          103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (292)
Q Consensus       103 ~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa  135 (292)
                      .|-||||+.|.+|+.|+.+| ++.+|+|+-|..
T Consensus        57 tD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG   88 (124)
T KOG3553|consen   57 TDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNG   88 (124)
T ss_pred             CCccEEEEEeccCChhhhhc-ceecceEEEecC
Confidence            35599999999999999999 999999999873

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=93.59  E-value=0.33  Score=53.08  Aligned_cols=70  Identities=17%  Similarity=0.130  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc----------------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE----------------ESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~----------------d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ++.+|..+++.+++.+|.-.  .++.+-+...                +...|++.+|-||.++|+.++|+..++++|++
T Consensus        68 yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~  145 (906)
T PRK14720         68 LYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA  145 (906)
T ss_pred             HHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            35788888888888888777  6665554431                11258999999999999999999999999999


Q ss_pred             CccChhhh
Q 022783          282 GYEDFKVI  289 (292)
Q Consensus       282 G~~Df~~I  289 (292)
                      .++|...+
T Consensus       146 D~~n~~aL  153 (906)
T PRK14720        146 DRDNPEIV  153 (906)
T ss_pred             CcccHHHH
Confidence            88765443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.58  E-value=0.97  Score=34.88  Aligned_cols=65  Identities=31%  Similarity=0.316  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+..+..+...+++++|+..+.+++...|..  ....+++++.++...+++++|+..+.++++....
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         170 LLALGALLEALGRYEEALELLEKALKLNPDD--DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            3456666778899999999999999988862  3457999999999999999999999999887643

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.51  E-value=0.19  Score=36.50  Aligned_cols=34  Identities=15%  Similarity=0.062  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          254 ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .+|.+|..|.++|+|++|+..++.+++.-+++-+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            5899999999999999999999999999877543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=93.48  E-value=0.17  Score=50.44  Aligned_cols=78  Identities=12%  Similarity=0.033  Sum_probs=65.3

Q ss_pred             hhHHHHHhhH-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          204 NYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       204 ~Y~kkk~lk~-~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .|.+...+.+ ++--..|++.+|++.++|..|-.-.+.|+.++-.   +..+|.-++.+...+|+.++|-++|+.+|++-
T Consensus       119 CYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  119 CYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---YVKAYSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            5555555444 2223359999999999999999999999999864   56789999999999999999999999999998


Q ss_pred             cc
Q 022783          283 YE  284 (292)
Q Consensus       283 ~~  284 (292)
                      ..
T Consensus       196 P~  197 (536)
T KOG4648|consen  196 PK  197 (536)
T ss_pred             cc
Confidence            76

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=93.42  E-value=0.068  Score=56.08  Aligned_cols=43  Identities=33%  Similarity=0.695  Sum_probs=40.5

Q ss_pred             CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccc
Q 022783           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV  136 (292)
Q Consensus        93 KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~  136 (292)
                      +-.||.|+-++|=||||..|.+|+.|++.| |+.||+|+.|.-+
T Consensus       417 dSvGLRLAGGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~v  459 (1027)
T KOG3580|consen  417 DSVGLRLAGGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTV  459 (1027)
T ss_pred             CeeeeEeccCCceeEEEeecccCCchhhcc-ccccceeEEeccc
Confidence            578999999999999999999999999999 9999999999865

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=93.18  E-value=0.29  Score=46.01  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=48.9

Q ss_pred             ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cC-CceEEEEeec
Q 022783           95 YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQKR  168 (292)
Q Consensus        95 lGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~-g~v~l~l~r~  168 (292)
                      +|+.-....+  -|+.|..+.+++-|+++| |+.||+|+++-.      .+..+..+.+.++.. +. ..+.|+++|.
T Consensus       179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING------~~i~~~~~~~~~l~~~~~~~~v~l~V~R~  249 (259)
T TIGR01713       179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNG------LDLRDPEQAFQALQMLREETNLTLTVERD  249 (259)
T ss_pred             EeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCeEEEEEEEC
Confidence            4555543221  289999999999999999 999999999763      345555566666664 34 3689999985

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.12  E-value=0.042  Score=54.11  Aligned_cols=78  Identities=10%  Similarity=0.011  Sum_probs=62.7

Q ss_pred             hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          204 NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .|-..+++........ +++..+.++++...||.-++.||+++|+.   +.-|--+...+..+|+|++|-.+|..|.+++
T Consensus       136 ~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---a~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  136 LFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---AKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             ccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc---ccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            5555555444443332 88999999999999999999999999973   3345567778889999999999999999999


Q ss_pred             cc
Q 022783          283 YE  284 (292)
Q Consensus       283 ~~  284 (292)
                      |+
T Consensus       213 ~d  214 (377)
T KOG1308|consen  213 YD  214 (377)
T ss_pred             cc
Confidence            98

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=93.08  E-value=0.21  Score=52.68  Aligned_cols=49  Identities=12%  Similarity=0.066  Sum_probs=25.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG  271 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeA  271 (292)
                      -.|+.+...++|++||+||..||.++|+|   ..+|+.+|...+.|++++..
T Consensus        80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN---~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   80 VLGLLQRSDKKYDEAIKCYRNALKIEKDN---LQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHhhhhH
Confidence            44555555666666666666666666654   22344444444444444333

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=93.03  E-value=0.15  Score=52.66  Aligned_cols=40  Identities=38%  Similarity=0.641  Sum_probs=36.1

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccc
Q 022783           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV  136 (292)
Q Consensus        95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~  136 (292)
                      ||+++.+ +.|+..|..|.++|.|.++| |.+||+|+++-..
T Consensus       453 LGl~v~~-~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~  492 (558)
T COG3975         453 LGLKVKS-EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI  492 (558)
T ss_pred             cceEecc-cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence            7888877 57899999999999999999 9999999998764

>TIGR00054 RIP metalloprotease RseP

Probab=92.88  E-value=0.2  Score=49.74  Aligned_cols=59  Identities=12%  Similarity=0.253  Sum_probs=45.3

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC-CceEEEEeeccC
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRYG  170 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~-g~v~l~l~r~~~  170 (292)
                      -++.|.+|.+++.|+++| +++||+|+++..      .+..++.++..+++... .++.++++|.-.
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng------~~V~s~~dl~~~l~~~~~~~v~l~v~R~g~  262 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSING------EKLRSWTDFVSAVKENPGKSMDIKVERNGE  262 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHhCCCCceEEEEEECCE
Confidence            378999999999999999 999999999863      24455666666776543 457888888543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.88  E-value=0.27  Score=44.56  Aligned_cols=71  Identities=14%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             hccccchhhHHHHHHHhhHHHHHhhHhHHHH-HHHHHHHHHcCC-----------HHHHHHHHHHHHcCCCCccchhHHH
Q 022783          188 RNSGVISNRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGK-----------YEVAREKFESVLGSKPTPEESSVAS  255 (292)
Q Consensus       188 rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~-~n~G~~L~k~gd-----------YeeAIe~fekALeldP~~~d~a~a~  255 (292)
                      |..|.-...+.+.....|.++..+++...++ ++.|++|...+.           |++|.++|++|...+|++     -.
T Consensus        41 fk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-----e~  115 (186)
T PF06552_consen   41 FKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-----EL  115 (186)
T ss_dssp             HS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT------HH
T ss_pred             ccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-----HH
Confidence            4444434444444556888888888887554 699999965443           899999999999999984     36


Q ss_pred             HHHHHHHH
Q 022783          256 YNVACCYS  263 (292)
Q Consensus       256 YN~Accya  263 (292)
                      |++++-.+
T Consensus       116 Y~ksLe~~  123 (186)
T PF06552_consen  116 YRKSLEMA  123 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=92.86  E-value=0.59  Score=49.40  Aligned_cols=68  Identities=19%  Similarity=0.157  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI  289 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I  289 (292)
                      ==+|+.|..+|+-++|.++-..++..++.   ..+.|.=.|..+-.-.+|++||.|+..|++++-++.+-+
T Consensus        45 AmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil  112 (700)
T KOG1156|consen   45 AMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL  112 (700)
T ss_pred             HhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            36799999999999999999999999986   368899999999999999999999999999997765433

>PRK10941 hypothetical protein; Provisional

Probab=92.82  E-value=0.54  Score=44.55  Aligned_cols=64  Identities=20%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      |+=..+.++++|+.|+.+-+..|.++|+.   ..-+--+|.+|.++|.+..|+.+|+.-|+.=.+|-
T Consensus       186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~d---p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp  249 (269)
T PRK10941        186 TLKAALMEEKQMELALRASEALLQFDPED---PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP  249 (269)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence            56667889999999999999999999984   23477899999999999999999999998877653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.76  E-value=0.93  Score=43.43  Aligned_cols=68  Identities=15%  Similarity=0.054  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCccChh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL---NQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL---gq~eeALe~LekAIelG~~Df~  287 (292)
                      -+.+++.+|+.+|+|++|+=||++.+=++|.++   ..+--.|-++.-+   .+++-|.+.+.+|+++..+++.
T Consensus       156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~---l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r  226 (289)
T KOG3060|consen  156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP---LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR  226 (289)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence            345899999999999999999999999999852   2233344444444   4788999999999999876543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.70  E-value=0.34  Score=45.97  Aligned_cols=67  Identities=21%  Similarity=0.176  Sum_probs=49.6

Q ss_pred             HHHHHH--HHc--CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783          220 REGLQL--YRT--GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI  289 (292)
Q Consensus       220 n~G~~L--~k~--gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I  289 (292)
                      +.+..+  +..  +.|++|.-.|++..+..|.   ...+++.+|+|+..+|+|++|.+.|++|++....|...+
T Consensus       168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~---t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  168 QLAEAWVNLATGGEKYQDAFYIFEELSDKFGS---TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            555544  333  3699999999997665443   356789999999999999999999999998876665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=92.51  E-value=0.7  Score=44.47  Aligned_cols=70  Identities=16%  Similarity=-0.077  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch----------------------------------hHHHHHHHHH
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES----------------------------------SVASYNVACC  261 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~----------------------------------a~a~YN~Acc  261 (292)
                      +.+.-+|-+|...|++..|+..|.+|+.+.|++.++                                  -.+.+.+|..
T Consensus       157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~  236 (287)
T COG4235         157 EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFA  236 (287)
T ss_pred             hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            445566666666666666666666666666654222                                  2356777778


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCccC
Q 022783          262 YSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~~D  285 (292)
                      +...|+|.+|+...+.=++....|
T Consensus       237 afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         237 AFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHcccHHHHHHHHHHHHhcCCCC
Confidence            888888888888877777776553

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=92.48  E-value=1.2  Score=44.08  Aligned_cols=72  Identities=14%  Similarity=0.057  Sum_probs=30.9

Q ss_pred             ccccHHHHHHHhhcccc--chhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783          176 GELSEKEIIRAERNSGV--ISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPT  247 (292)
Q Consensus       176 ~~~~e~~~~~a~rN~Gv--I~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~  247 (292)
                      .++|-.++..|++-.|.  ...+|.+=.|..|..-......+..++ .+-++|.+..+|++||+.-++-..+.|.
T Consensus        99 pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q  173 (389)
T COG2956          99 PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ  173 (389)
T ss_pred             CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence            35566665555554433  222333333333333333233333333 3334444445555555555544444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=92.47  E-value=0.74  Score=47.43  Aligned_cols=78  Identities=12%  Similarity=0.116  Sum_probs=51.1

Q ss_pred             ccHHHHHH--HhhccccchhhHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHH
Q 022783          178 LSEKEIIR--AERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS  255 (292)
Q Consensus       178 ~~e~~~~~--a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~  255 (292)
                      -||--.|+  .+...|....+|.+....   .+.++.+ ....-.+|..|.++|++++|...|..-|..||++.   ..|
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~---~~~I~Dk-~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~---~Yy   75 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKN---EKQILDK-LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY---DYY   75 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhh---hhhCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---HHH
Confidence            35555554  456777777777776431   1111111 11223889999999999999999999999999752   336


Q ss_pred             HHHHHHH
Q 022783          256 YNVACCY  262 (292)
Q Consensus       256 YN~Accy  262 (292)
                      ..+.+|.
T Consensus        76 ~~L~~~~   82 (517)
T PF12569_consen   76 RGLEEAL   82 (517)
T ss_pred             HHHHHHH
Confidence            6666666

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.42  E-value=0.37  Score=48.61  Aligned_cols=66  Identities=18%  Similarity=0.134  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d-~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ...+..|..+...|+.++||+.|++++..+..-.. ....+|.++.||..+.+|++|.+++.+-++.
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            44569999999999999999999999965543222 2568999999999999999999999988765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03218 maturation of RBCL 1; Provisional

Probab=92.36  E-value=1.2  Score=49.63  Aligned_cols=61  Identities=16%  Similarity=0.158  Sum_probs=36.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--cCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekAL--eldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+...|.+.|++++|++.|++..  .+.|+    ...|..+-.+|.+.|++++|+..+.+.++.|+.
T Consensus       724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd----~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~  786 (1060)
T PLN03218        724 ALITALCEGNQLPKALEVLSEMKRLGLCPN----TITYSILLVASERKDDADVGLDLLSQAKEDGIK  786 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            34444556666666666666654  34454    234555666666666677777666666666654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.25  E-value=0.21  Score=31.95  Aligned_cols=28  Identities=25%  Similarity=0.191  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSK  245 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeld  245 (292)
                      +-++|..|...|+|++|+..+++++++.
T Consensus         5 ~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    5 LNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4589999999999999999999999653

>PLN03218 maturation of RBCL 1; Provisional

Probab=92.02  E-value=1.3  Score=49.26  Aligned_cols=61  Identities=16%  Similarity=0.125  Sum_probs=50.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHc--CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALe--ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+...|.+.|++++|++.|++..+  +.|+    ...|..+..+|.+.|++++|++.+++..+.|+.
T Consensus       689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd----vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~  751 (1060)
T PLN03218        689 SLMGACSNAKNWKKALELYEDIKSIKLRPT----VSTMNALITALCEGNQLPKALEVLSEMKRLGLC  751 (1060)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            566677889999999999998864  5665    356888999999999999999999998888864

>PRK04841 transcriptional regulator MalT; Provisional

Probab=92.00  E-value=1.2  Score=47.13  Aligned_cols=63  Identities=13%  Similarity=0.028  Sum_probs=44.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-----cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTP-----EESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~-----~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+.|..++..|++++|...+++++++-...     .....++.++|.++...|++++|...+.+|+++
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV  602 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence            367778888888888888888888642110     011334667777888888888888888888765

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=91.78  E-value=0.84  Score=45.20  Aligned_cols=94  Identities=16%  Similarity=0.115  Sum_probs=68.3

Q ss_pred             HhhccccchhhHHHHHHHhhHHHHHhhHhH-----HH--HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHH
Q 022783          186 AERNSGVISNRVREIQMQNYMKKKEQKERR-----EQ--DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNV  258 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-----~~--~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~  258 (292)
                      ..+..|+-+-+-+.++.+.+...+-++.+.     ..  +.|++-..+..|+|..||+--.+|+.++|+.   ..++|--
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h---~Ka~~R~  159 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH---LKAYIRG  159 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch---hhhhhhh
Confidence            334455555555555555222222233222     11  2388888899999999999999999999974   6789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          259 ACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       259 AccyakLgq~eeALe~LekAIelG  282 (292)
                      |-|+..++.+.+|+..|+..+.+-
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999887663

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.64  E-value=0.5  Score=44.71  Aligned_cols=64  Identities=16%  Similarity=0.196  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .|++|+.|-..|-+.-|---|+++|.++|+.   +.+++.++..+..-|+++.|.++++-.+++...
T Consensus        68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m---~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~  131 (297)
T COG4785          68 LFERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  131 (297)
T ss_pred             HHHhcchhhhhhHHHHHhhhhhhhhhcCCCc---HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence            4799999999999999999999999999973   456899999999999999999999999998765

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=91.55  E-value=0.31  Score=46.25  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=53.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       224 ~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      .+.+.+|++.|.+.|++||++-|+   -..-|+-.+-..-+-|+++.|...+++.+++..+|.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            456789999999999999999996   356799999999999999999999999999988875

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.41  E-value=1.5  Score=37.90  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc--ch-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ES-------SVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~--d~-------a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      |-++-.|..-.+.|-|++|...+.+|+++.-+.+  +.       +..|--++-++..+|+|+++|..-++||-.
T Consensus        10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            4455777778899999999999999996432210  11       567778889999999999999999999753

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.25  E-value=0.39  Score=46.49  Aligned_cols=62  Identities=23%  Similarity=0.311  Sum_probs=55.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      +.+..+.-.++|.+|...|++.++.||.+   ..+-+|+|.|...+|+..+|++.++.+++.-+.
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~---~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRN---AVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCc---hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            77788888999999999999999999974   456899999999999999999999999887554

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.78  E-value=1.6  Score=38.20  Aligned_cols=69  Identities=14%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHc-CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          215 REQDLREGLQLYRT---GKYEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       215 ~~~~~n~G~~L~k~---gdYeeAIe~fekALe-ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ....|+.+-.|...   .+.++.|.+++..+. -.|.  +.....|.+|..|+++++|++|+..++.-++.-.++
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence            34567888888554   667889999999997 4444  455678999999999999999999999998886543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.51  E-value=0.25  Score=32.18  Aligned_cols=32  Identities=25%  Similarity=0.188  Sum_probs=24.7

Q ss_pred             hHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHH
Q 022783          205 YMKKKEQKERR-EQDLREGLQLYRTGKYEVARE  236 (292)
Q Consensus       205 Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe  236 (292)
                      |.++.++.+.. ..++++|..|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            55666666655 445699999999999999973

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.40  E-value=0.78  Score=46.13  Aligned_cols=61  Identities=25%  Similarity=0.319  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI  279 (292)
                      ++.+-++-..|..-.|++||+.|.++|..+|+   +-.+-.|+|.||+++.-++-+-+.+.-=+
T Consensus       152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e---y~alNVy~ALCyyKlDYydvsqevl~vYL  212 (557)
T KOG3785|consen  152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE---YIALNVYMALCYYKLDYYDVSQEVLKVYL  212 (557)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh---hhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            33456677778888999999999999999996   44567899999999999988877775443

>TIGR00054 RIP metalloprotease RseP

Probab=90.39  E-value=0.37  Score=47.94  Aligned_cols=56  Identities=16%  Similarity=0.279  Sum_probs=39.9

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEee
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK  167 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r  167 (292)
                      -+++|.+|.|++.|+++| +++||+|+.+-..      +..+.......|....+++.+.+.|
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~------~v~~~~dl~~~ia~~~~~v~~~I~r  183 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGN------KIPGFKDVRQQIADIAGEPMVEILA  183 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhhcccceEEEEE
Confidence            478899999999999999 9999999997642      2223333333344333777777776

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.33  E-value=1.2  Score=44.35  Aligned_cols=79  Identities=16%  Similarity=-0.019  Sum_probs=53.4

Q ss_pred             HHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          208 KKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       208 kk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ..++++..+.++-++..|....+-+.|+..|.++|+.-|.  +. ....-+|.+|-.|+++++|++.++.++++...+-+
T Consensus       249 sL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~--~V-T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  249 SLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF--DV-TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE  325 (478)
T ss_pred             HhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc--hh-hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence            3334444455566666676777777777777777766665  22 34677888888888888888888888887655444


Q ss_pred             hh
Q 022783          288 VI  289 (292)
Q Consensus       288 ~I  289 (292)
                      .|
T Consensus       326 ai  327 (478)
T KOG1129|consen  326 AI  327 (478)
T ss_pred             ee
Confidence            43

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=90.19  E-value=1.3  Score=46.02  Aligned_cols=61  Identities=11%  Similarity=0.003  Sum_probs=50.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHc--CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALe--ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .....|.+.|++++|++.|++..+  +.|+    ...|..+-.+|+++|++++|...+.+.++.|+.
T Consensus       295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~  357 (697)
T PLN03081        295 SMLAGYALHGYSEEALCLYYEMRDSGVSID----QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP  357 (697)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence            566777888999999999998874  5665    346888888889999999999999999988865

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.11  E-value=0.32  Score=48.81  Aligned_cols=31  Identities=16%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          252 SVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       252 a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ..++|.+|..|-++|..-.|.++|++|.++-
T Consensus       206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            4578888889999999999999999886654

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=89.97  E-value=0.36  Score=48.27  Aligned_cols=56  Identities=11%  Similarity=0.202  Sum_probs=40.1

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-C-CceEEEEeec
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-V-GPLLMKMQKR  168 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~-g~v~l~l~r~  168 (292)
                      ..+|.+|.|++-|+++| +++||+|+.+-..      +.++..+....+..+ + ..+.+++.|.
T Consensus       127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~------~V~~~~~l~~~v~~~~~g~~v~v~v~R~  184 (449)
T PRK10779        127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGI------ETPDWDAVRLALVSKIGDESTTITVAPF  184 (449)
T ss_pred             CccccccCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhhccCCceEEEEEeC
Confidence            45799999999999999 9999999997642      444555444444433 2 2477777774

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=89.94  E-value=0.5  Score=48.49  Aligned_cols=68  Identities=12%  Similarity=0.042  Sum_probs=49.7

Q ss_pred             hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHH
Q 022783          204 NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe  273 (292)
                      .+.++..+......++.+|..+...|++++|++.|++|+.++|..+.. ..+-| ..+|+.+..+.-++.
T Consensus       442 ~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~-~~~~~-~~f~~~~~~~~~~~~  509 (517)
T PRK10153        442 AINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL-YWIEN-LVFQTSVETVVPYLY  509 (517)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH-HHHHh-ccccccHHHHHHHHH
Confidence            555556666555556688999999999999999999999999986433 33334 567777776665543

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=89.88  E-value=0.69  Score=44.27  Aligned_cols=58  Identities=28%  Similarity=0.516  Sum_probs=44.1

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh-ccCC-ceEEEEeeccCC
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR-QRVG-PLLMKMQKRYGK  171 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~-~r~g-~v~l~l~r~~~~  171 (292)
                      |++|..|.+++.|+++| ++.||+|+++..      +++......+..+. .++| .+.+++.|. |+
T Consensus       271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng------~~v~~~~~l~~~v~~~~~g~~v~~~~~r~-g~  330 (347)
T COG0265         271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNG------KPVASLSDLVAAVASNRPGDEVALKLLRG-GK  330 (347)
T ss_pred             ceEEEecCCCChHHHcC-CCCCCEEEEECC------EEccCHHHHHHHHhccCCCCEEEEEEEEC-CE
Confidence            49999999999999999 999999999874      34444544445544 3345 678999998 54

>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]

Probab=89.87  E-value=0.88  Score=43.96  Aligned_cols=71  Identities=27%  Similarity=0.545  Sum_probs=51.6

Q ss_pred             ecCCceeEEeeeC------CC-----CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC
Q 022783           91 IEQPYGLKFAKGR------DG-----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (292)
Q Consensus        91 l~KPlGl~~~~~~------~G-----~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g  159 (292)
                      -+||||.-+-.+.      .|     ||||..++|||=|+.+|.+.|-|.|+-|..+   | +--..+.||-.++-..+-
T Consensus       169 ~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGI---E-VaGKTLDQVTDMMvANsh  244 (358)
T KOG3606|consen  169 SEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGI---E-VAGKTLDQVTDMMVANSH  244 (358)
T ss_pred             CCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCE---E-eccccHHHHHHHHhhccc
Confidence            3799997775441      23     9999999999999999999999999998742   1 123456676666655555


Q ss_pred             ceEEEE
Q 022783          160 PLLMKM  165 (292)
Q Consensus       160 ~v~l~l  165 (292)
                      .+-+++
T Consensus       245 NLIiTV  250 (358)
T KOG3606|consen  245 NLIITV  250 (358)
T ss_pred             ceEEEe
Confidence            555544

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=89.70  E-value=2.5  Score=38.82  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=56.1

Q ss_pred             HhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783          203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       203 a~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAI  279 (292)
                      ..|++.+......+=.++.|..+++.|+|++|++.|+.++..--..   .-...+.-.+.-|+.++|+.+..+..+-+-+
T Consensus       166 ~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  166 EQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            4666555544444555799999999999999999999997432110   1124567788999999999999998876543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=89.47  E-value=0.23  Score=52.95  Aligned_cols=48  Identities=25%  Similarity=0.641  Sum_probs=39.4

Q ss_pred             EEEEecC-----CceeEEeee-CCC-CeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783           87 YEVEIEQ-----PYGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (292)
Q Consensus        87 ~~v~l~K-----PlGl~~~~~-~~G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa  135 (292)
                      -+|.|.|     ||-+.|--+ ..| ||||++|.||..|+..| ++-||+++-|..
T Consensus       537 RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNg  591 (1283)
T KOG3542|consen  537 RQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNG  591 (1283)
T ss_pred             eeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccc
Confidence            4566666     677777665 556 99999999999999999 999999998764

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=89.37  E-value=3.2  Score=44.80  Aligned_cols=78  Identities=26%  Similarity=0.503  Sum_probs=57.9

Q ss_pred             ceEEEEe-cCCceeEEee-eCC--C-CeEEEEeCCCCCcccccCcccCCEEEEeccc--cCcccccccchhhHHHHhh--
Q 022783           85 EEYEVEI-EQPYGLKFAK-GRD--G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV--FGTEIWPAAEYGRTMYTIR--  155 (292)
Q Consensus        85 ~~~~v~l-~KPlGl~~~~-~~~--G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~--fg~e~w~a~~~g~~~~ai~--  155 (292)
                      .+..|.| .||.|.-|-- +.|  | -|||-.|++.|.|++.|.++.||.|+.+-..  -|      ..--.|+..+.  
T Consensus       649 k~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~G------ksH~~vv~Lm~~A  722 (984)
T KOG3209|consen  649 KELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEG------KSHSEVVDLMEAA  722 (984)
T ss_pred             cceeEEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccC------ccHHHHHHHHHHH
Confidence            5677766 5788876643 222  2 8999999999999999999999999998752  22      12224555444  


Q ss_pred             ccCCceEEEEeec
Q 022783          156 QRVGPLLMKMQKR  168 (292)
Q Consensus       156 ~r~g~v~l~l~r~  168 (292)
                      .|+|.|.|++.|.
T Consensus       723 ArnghV~LtVRRk  735 (984)
T KOG3209|consen  723 ARNGHVNLTVRRK  735 (984)
T ss_pred             HhcCceEEEEeee
Confidence            7899999999885

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.14  E-value=1.8  Score=45.47  Aligned_cols=70  Identities=24%  Similarity=0.158  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-------CCc-----cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSK-------PTP-----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeld-------P~~-----~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      +.+||.+.++...|+|.+|++..++|+.++       -.+     .+...+.--+|.++-.+|+-++|...+...|....
T Consensus       176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~  255 (652)
T KOG2376|consen  176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP  255 (652)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence            345899999999999999999999994322       111     12356788999999999999999999999998876


Q ss_pred             cC
Q 022783          284 ED  285 (292)
Q Consensus       284 ~D  285 (292)
                      .|
T Consensus       256 ~D  257 (652)
T KOG2376|consen  256 AD  257 (652)
T ss_pred             CC
Confidence            54

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.98  E-value=1.4  Score=45.67  Aligned_cols=57  Identities=16%  Similarity=0.138  Sum_probs=49.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~Lek  277 (292)
                      .+|+.+-+.|+.+|||+.|...+...|.. +...++||+--|+..++.|.++-..|.+
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            78999999999999999999999887753 3445899999999999999988777665

The molecular function of this protein is uncertain.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=88.76  E-value=2.9  Score=44.83  Aligned_cols=91  Identities=18%  Similarity=0.152  Sum_probs=66.7

Q ss_pred             ccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC
Q 022783          189 NSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (292)
Q Consensus       189 N~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq  267 (292)
                      +.|++.....-++.++-+     ....++.+ ..--..++..+|+.|-..|.+|-...|+.    -+|+--+.+.--+++
T Consensus       596 ~agdv~~ar~il~~af~~-----~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----Rv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEA-----NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----RVWMKSANLERYLDN  666 (913)
T ss_pred             hcCCcHHHHHHHHHHHHh-----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----hhhHHHhHHHHHhhh
Confidence            447877777666665321     11122322 33334488899999999999999998872    368888888888999


Q ss_pred             HHHHHHHHHHHHHhCccChhhh
Q 022783          268 VKAGLSALEDALLAGYEDFKVI  289 (292)
Q Consensus       268 ~eeALe~LekAIelG~~Df~~I  289 (292)
                      .++|+..|++||+. |.||.++
T Consensus       667 ~eeA~rllEe~lk~-fp~f~Kl  687 (913)
T KOG0495|consen  667 VEEALRLLEEALKS-FPDFHKL  687 (913)
T ss_pred             HHHHHHHHHHHHHh-CCchHHH
Confidence            99999999999998 8888764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.67  E-value=2.9  Score=38.16  Aligned_cols=59  Identities=10%  Similarity=0.059  Sum_probs=46.2

Q ss_pred             HHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          226 YRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       226 ~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+..=+..|++.|++|++.+..+   .+...+.|-+|-.+.++|++++|+..+.+.|..+-.
T Consensus       136 ~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  136 NEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            33344778999999999665431   233568999999999999999999999999887644

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=88.34  E-value=1.5  Score=45.65  Aligned_cols=60  Identities=13%  Similarity=0.055  Sum_probs=44.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ...+...|+++.|...+++.++++|++  . ..|.-+.-+|++.|++++|.+.+++-.+.|..
T Consensus       501 l~a~~~~g~~~~a~~~~~~l~~~~p~~--~-~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~  560 (697)
T PLN03081        501 LTACRIHKNLELGRLAAEKLYGMGPEK--L-NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS  560 (697)
T ss_pred             HHHHHHcCCcHHHHHHHHHHhCCCCCC--C-cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence            334456777777888888888888863  2 24666777888888888888888888888753

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=88.08  E-value=1.9  Score=47.93  Aligned_cols=65  Identities=20%  Similarity=0.172  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCccC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-VKAGLSALEDALLAGYED  285 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq-~eeALe~LekAIelG~~D  285 (292)
                      ++..+......++|++||+.-.++|+.||++   ..+|.-++.++..+++ .++|-+++-.|.++-+++
T Consensus         5 aLK~Ak~al~nk~YeealEqskkvLk~dpdN---YnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn   70 (1238)
T KOG1127|consen    5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDN---YNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN   70 (1238)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh
Confidence            4456667778999999999999999999984   5689999999999999 999999999999997663

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.98  E-value=0.85  Score=35.65  Aligned_cols=30  Identities=10%  Similarity=0.132  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          214 RREQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       214 ~~~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      .+..+..+|+.+-+.|+|++||.+|++|++
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            344556889999999999999999999885

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=87.93  E-value=2  Score=45.36  Aligned_cols=62  Identities=15%  Similarity=0.024  Sum_probs=47.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d--~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..|..++..|+|++|...++++++..|....  ...++.+++.++..+|++++|+..+++|++.
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~  520 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM  520 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4567778889999999999999875454211  2356788888888889999998888888765

>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]

Probab=87.55  E-value=0.32  Score=51.46  Aligned_cols=56  Identities=23%  Similarity=0.437  Sum_probs=44.0

Q ss_pred             cccccceEEEEecC----CceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783           80 QEEKYEEYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (292)
Q Consensus        80 ~~~~~~~~~v~l~K----PlGl~~~~~~~G----~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa  135 (292)
                      |...-+.-+|-|+|    +||+++-|+.=|    -|+|+-.-.+|.|+++|.+.+||+|+++..
T Consensus       640 FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING  703 (829)
T KOG3605|consen  640 FAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSING  703 (829)
T ss_pred             hhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecC
Confidence            33333444566665    899999887555    678889999999999999999999999874

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=87.40  E-value=2.7  Score=42.18  Aligned_cols=58  Identities=19%  Similarity=0.219  Sum_probs=52.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIe  280 (292)
                      ..+|..+++.+.|.+|-+.|+.||...|.    ...|.-+|.+|..+|+.++|-+..++|+-
T Consensus       332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         332 STLGRLALKNKLWGKASEALEAALKLRPS----ASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhcCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            48899999999999999999999999997    23477789999999999999999999973

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=86.71  E-value=1.4  Score=34.85  Aligned_cols=29  Identities=17%  Similarity=0.224  Sum_probs=13.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPT  247 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~  247 (292)
                      +..|..+...|+|++|++.+-..+..+++
T Consensus        26 ~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen   26 YALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            44444445555555555555555544444

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=86.60  E-value=1.2  Score=47.16  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=62.3

Q ss_pred             cCCceeEEeeeCC--------C-CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           92 EQPYGLKFAKGRD--------G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        92 ~KPlGl~~~~~~~--------G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      ++|.++.|-..++        | .|||.+|...|=|++.|.|+.||+|+.+..+.-.    -..+-.+...|...-|.+.
T Consensus       197 ~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkINGtvte----NmSLtDar~LIEkS~GKL~  272 (1027)
T KOG3580|consen  197 PGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTE----NMSLTDARKLIEKSRGKLQ  272 (1027)
T ss_pred             CCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEECcEeec----cccchhHHHHHHhccCceE
Confidence            5678887766543        2 7999999999999999999999999998765443    3355567788998999999


Q ss_pred             EEEeeccCCc
Q 022783          163 MKMQKRYGKM  172 (292)
Q Consensus       163 l~l~r~~~~~  172 (292)
                      |++.|--+.+
T Consensus       273 lvVlRD~~qt  282 (1027)
T KOG3580|consen  273 LVVLRDSQQT  282 (1027)
T ss_pred             EEEEecCCce
Confidence            9999977763

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.47  E-value=1.4  Score=34.40  Aligned_cols=31  Identities=19%  Similarity=0.132  Sum_probs=26.2

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          213 ERREQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       213 ~~~~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      .++-++..+|+.+-+.|+|++|+.+|..||+
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3445566889999999999999999999985

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.07  E-value=1.6  Score=32.35  Aligned_cols=28  Identities=18%  Similarity=0.357  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      ...++.|+..-+.|+|++|+++|.+|++
T Consensus         6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    6 IELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4556889999999999999999999884

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]

Probab=86.04  E-value=1  Score=41.88  Aligned_cols=31  Identities=35%  Similarity=0.633  Sum_probs=27.5

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccc
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAV  136 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~  136 (292)
                      .-++|.+|+|++-|+++| +++||.|+....+
T Consensus       139 ~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV  169 (231)
T KOG3129|consen  139 PFAVVDSVVPGSPADEAG-LCVGDEILKFGNV  169 (231)
T ss_pred             ceEEEeecCCCChhhhhC-cccCceEEEeccc
Confidence            368899999999999999 9999999996554

>PLN03077 Protein ECB2; Provisional

Probab=86.00  E-value=4.7  Score=42.99  Aligned_cols=61  Identities=20%  Similarity=0.197  Sum_probs=44.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHc--CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL-LAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALe--ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI-elG~~  284 (292)
                      .....|.+.|++++|++.|++.++  +.|+    ...|..+-.++++.|++++|+..+++.. +.|..
T Consensus       559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~  622 (857)
T PLN03077        559 ILLTGYVAHGKGSMAVELFNRMVESGVNPD----EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT  622 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence            556667788999999999998775  5565    2345555566778888999988888887 55543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=85.78  E-value=1.9  Score=44.03  Aligned_cols=65  Identities=18%  Similarity=0.145  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +..+|--|..+|..++|+.|+..-+++|..+|++   ..++--++..+..+++.++|+.++..|+.+-
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~---~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN---HEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc---chHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            4556667777788888888888888888888874   2356677777888888888888888887776

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=84.71  E-value=4.3  Score=30.46  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      ...+..|+.+-+.|+|++|+.+|.+|++
T Consensus         9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e   36 (77)
T smart00745        9 KELISKALKADEAGDYEEALELYKKAIE   36 (77)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455788888889999999999988874

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.35  E-value=2.7  Score=38.72  Aligned_cols=60  Identities=13%  Similarity=0.062  Sum_probs=39.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +++|..++..|.|++|++..+..-+-.=    .+..--=++-.+..+|+-++|...+++|++.+
T Consensus       130 lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         130 LRLARVQLQQKKADAALKTLDTIKEESW----AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            4777777778888887776554322110    12223446778888888888888888888775

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.23  E-value=7.4  Score=35.95  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      -.+..+-.+++.+++++|+.....+|..-.+..-...+-.++|.+...+|++++|+..|+.-.+-+|.
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~  158 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA  158 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH
Confidence            45688888999999999999999999764432123667889999999999999999999887766654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=84.18  E-value=4.9  Score=43.45  Aligned_cols=69  Identities=17%  Similarity=0.057  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...|..++.|...++.+.|++.-.++|++++.  +...+|.-+|.|++-.+++.+|+...+.|++-=.++|
T Consensus       479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~--~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~  547 (799)
T KOG4162|consen  479 LVIFYLALQYAEQRQLTSALDYAREALALNRG--DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH  547 (799)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence            34468888888888888888888888888776  4456788888888888888888888888877644444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=84.08  E-value=2  Score=43.96  Aligned_cols=69  Identities=22%  Similarity=0.370  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-----------ccch----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPT-----------PEES----SVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~-----------~~d~----a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ++.+|-..|++++|..|+-.|..||+++.+           .+|+    +.+---+..||.++++.+.||.+.-+.|-++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            457888889999999999999999876543           2233    4556778999999999999999999999998


Q ss_pred             ccCh
Q 022783          283 YEDF  286 (292)
Q Consensus       283 ~~Df  286 (292)
                      +..|
T Consensus       259 P~~f  262 (569)
T PF15015_consen  259 PSYF  262 (569)
T ss_pred             cchh
Confidence            7654

>PLN03077 Protein ECB2; Provisional

Probab=83.75  E-value=3.4  Score=44.02  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       223 ~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..|.+.|++++|...|++.   .|+    ...|..+..+|.+.|+.++|++.+++.++.|..
T Consensus       532 ~~y~k~G~~~~A~~~f~~~---~~d----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~  586 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH---EKD----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVN  586 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc---CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            5567889999999999986   554    357999999999999999999999999998865

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=83.32  E-value=4.8  Score=39.17  Aligned_cols=59  Identities=24%  Similarity=0.293  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~Lek  277 (292)
                      +..+.++..+.+.|++.+|...|..++...|++   +.+..-+|.||...|+.+.|...|..
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcCChHHHHHHHHh
Confidence            455688999999999999999999999999985   34567789999999999999887765

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=82.77  E-value=4.9  Score=38.16  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL  265 (292)
                      .+..+-++|+.++|++|+...++-|.+.|+.++...++|=++.++...
T Consensus        74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~  121 (254)
T COG4105          74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ  121 (254)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence            458899999999999999999999999999888888999999997653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.74  E-value=1.9  Score=26.30  Aligned_cols=23  Identities=13%  Similarity=0.017  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q 022783          254 ASYNVACCYSKLNQVKAGLSALE  276 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~Le  276 (292)
                      +++++|-.|..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            56777777888888877777665

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=82.61  E-value=6.2  Score=42.06  Aligned_cols=125  Identities=14%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             cccccccchh-hHHHHhhccCCceEEEEeeccCCccccccccHHHHHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHH
Q 022783          139 TEIWPAAEYG-RTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQ  217 (292)
Q Consensus       139 ~e~w~a~~~g-~~~~ai~~r~g~v~l~l~r~~~~~~~~~~~~e~~~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~  217 (292)
                      +.+.|....| ++.-+|+--+||.-+.|--.-==|+..|.-+-+               +.=.+-+...+   ...+.-.
T Consensus       583 ~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a---------------~~cl~~a~~~~---p~~~~v~  644 (886)
T KOG4507|consen  583 NYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFA---------------IACLQRALNLA---PLQQDVP  644 (886)
T ss_pred             cccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHH---------------HHHHHHHhccC---hhhhccc
Confidence            4555666666 566677777888777664322222332322222               11111111110   0111223


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+++++.+.+-+...+|-....++|.++-.   ....+|-.+..|..+.+++.||+++.+|+++...
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~s---epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~  708 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSS---EPLTFLSLGNAYLALKNISGALEAFRQALKLTTK  708 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhccc---CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence            469999999999999999999999988743   2356999999999999999999999999998754

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=82.25  E-value=6.4  Score=36.72  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=33.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHc-CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALe-ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +.+|+++.+.|+|.||...|+++|. +=-.  |. ...-.+|-....+++..+|...|++-.+.
T Consensus        93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~--d~-a~lLglA~Aqfa~~~~A~a~~tLe~l~e~  153 (251)
T COG4700          93 YRLANALAELGRYHEAVPHYQQALSGIFAH--DA-AMLLGLAQAQFAIQEFAAAQQTLEDLMEY  153 (251)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhccccCC--CH-HHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence            4667777777777777777777762 1111  11 23444555555555555555555554444

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=82.14  E-value=2.4  Score=42.59  Aligned_cols=67  Identities=19%  Similarity=0.376  Sum_probs=40.7

Q ss_pred             CCceeEEeeeCCCCeEEEEeCC--------CCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCCceEE
Q 022783           93 QPYGLKFAKGRDGGTYIDAIAP--------GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVGPLLM  163 (292)
Q Consensus        93 KPlGl~~~~~~~G~v~V~~v~~--------ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g~v~l  163 (292)
                      .|.||.+.-   -||.|....+        ++.|+++| |++||+|+.+-   |..+-..+++   ..+|+. ...++.|
T Consensus        96 ~~iGI~l~t---~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsIN---G~~V~s~~DL---~~iL~~~~g~~V~L  165 (402)
T TIGR02860        96 QSIGVKLNT---KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKIN---GEKIKNMDDL---ANLINKAGGEKLTL  165 (402)
T ss_pred             EEEEEEEec---CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEEC---CEECCCHHHH---HHHHHhCCCCeEEE
Confidence            356666643   3666655432        35577778 99999999875   3334344444   344442 2456888


Q ss_pred             EEeecc
Q 022783          164 KMQKRY  169 (292)
Q Consensus       164 ~l~r~~  169 (292)
                      ++.|.-
T Consensus       166 tV~R~G  171 (402)
T TIGR02860       166 TIERGG  171 (402)
T ss_pred             EEEECC
Confidence            888754

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=82.10  E-value=1.4  Score=45.76  Aligned_cols=62  Identities=21%  Similarity=0.277  Sum_probs=52.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHc---------CCCCc------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          220 REGLQLYRTGKYEVAREKFESVLG---------SKPTP------EESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALe---------ldP~~------~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      |+|.++|..+.|.-++..|.+||.         +.|..      ...-.+.||.+..|...|+.-.|.+|+.+|+..
T Consensus       288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence            899999999999999999999994         23321      012357999999999999999999999999875

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.87  E-value=2.5  Score=29.62  Aligned_cols=28  Identities=18%  Similarity=0.405  Sum_probs=24.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          255 SYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       255 ~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .+++|..|..+|+.+.|.+.|++.++-|
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            4789999999999999999999999654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.64  E-value=2.3  Score=41.07  Aligned_cols=76  Identities=22%  Similarity=0.381  Sum_probs=58.1

Q ss_pred             EEecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh--ccCCceEEEEe
Q 022783           89 VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQ  166 (292)
Q Consensus        89 v~l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~--~r~g~v~l~l~  166 (292)
                      |.-..-|||.+..+.-|++||..|.+|+=-++-..|.|||-|.++.   |..|.--+-| +|-..++  .|...+.|+|-
T Consensus       133 ~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiN---ge~ivG~RHY-eVArmLKel~rge~ftlrLi  208 (334)
T KOG3938|consen  133 VKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAIN---GESIVGKRHY-EVARMLKELPRGETFTLRLI  208 (334)
T ss_pred             EecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhc---CccccchhHH-HHHHHHHhcccCCeeEEEee
Confidence            3445679999999889999999999999999988999999998875   4445545555 3444444  46777888885


Q ss_pred             ec
Q 022783          167 KR  168 (292)
Q Consensus       167 r~  168 (292)
                      -|
T Consensus       209 eP  210 (334)
T KOG3938|consen  209 EP  210 (334)
T ss_pred             cc
Confidence            54

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=81.45  E-value=17  Score=29.73  Aligned_cols=66  Identities=24%  Similarity=0.105  Sum_probs=47.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-------------------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTP-------------------EESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~-------------------~d~a~a~YN~AccyakLgq~eeALe~LekAI  279 (292)
                      ...|......++.+.++..+.+++.+-..+                   .....++-.++-.+...|++++|+..|.+++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            355777778899999999999999754321                   0113345666677888999999999999999


Q ss_pred             HhCcc
Q 022783          280 LAGYE  284 (292)
Q Consensus       280 elG~~  284 (292)
                      .+.+-
T Consensus        90 ~~dP~   94 (146)
T PF03704_consen   90 ALDPY   94 (146)
T ss_dssp             HHSTT
T ss_pred             hcCCC
Confidence            98754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=81.26  E-value=1.8  Score=43.91  Aligned_cols=25  Identities=36%  Similarity=0.747  Sum_probs=22.8

Q ss_pred             EEEeCCCCCcccccCcccCCEEEEec
Q 022783          109 IDAIAPGGSADKTGMFQVGDKVLATS  134 (292)
Q Consensus       109 V~~v~~ggnA~k~g~i~vGD~l~~~S  134 (292)
                      |..|.|++-|+++| |++||+|+++-
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsIN   26 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSIN   26 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEEC
Confidence            56789999999999 99999999985

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.22  E-value=2.6  Score=32.63  Aligned_cols=28  Identities=14%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      -+.+..|+.+-+.|+|++|+.+|.+||+
T Consensus         7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie   34 (77)
T cd02683           7 KEVLKRAVELDQEGRFQEALVCYQEGID   34 (77)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3556888999999999999999998874

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.97  E-value=3.6  Score=43.75  Aligned_cols=152  Identities=18%  Similarity=0.262  Sum_probs=86.5

Q ss_pred             cccccCcccCCEEEEeccc------cCcccccccchhhHHHHhh--ccCCceEEEEeeccCCcc--ccccccHHH--HHH
Q 022783          118 ADKTGMFQVGDKVLATSAV------FGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQKRYGKME--QTGELSEKE--IIR  185 (292)
Q Consensus       118 A~k~g~i~vGD~l~~~Sa~------fg~e~w~a~~~g~~~~ai~--~r~g~v~l~l~r~~~~~~--~~~~~~e~~--~~~  185 (292)
                      +-++| +=|||.+++++++      .|+++.....+.++||.|.  .+-.-+||.=+. +-=..  ..-++=|=|  .+|
T Consensus       522 ~v~tg-~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy~~~~~rvYL~Dke-~nVi~y~l~l~vleyqt~vmr  599 (794)
T KOG0276|consen  522 SVKTG-KWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGYVANDNRVYLHDKE-LNVISYKILLEVLEYQTLVLR  599 (794)
T ss_pred             heeec-eeeeeEEEEeecccceeEEcCCceEEEEEeccchhheeeeecCCEEEEeecc-cceEeEeeehHHHHHHHHhhh
Confidence            33566 7799999999986      7899999999999999998  444445553221 00000  000001111  111


Q ss_pred             Hhh--ccccchhhHHHHH--HHhhHHHHHhhHhH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHH
Q 022783          186 AER--NSGVISNRVREIQ--MQNYMKKKEQKERR-------EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA  254 (292)
Q Consensus       186 a~r--N~GvI~~~l~eiq--ea~Y~kkk~lk~~~-------~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a  254 (292)
                      -.+  ..|++..--++++  .+++..+..-++++       +.-|+++   .+.|+++.|.+.-.   +.+..     .=
T Consensus       600 rd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFela---l~lgrl~iA~~la~---e~~s~-----~K  668 (794)
T KOG0276|consen  600 RDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQRFELA---LKLGRLDIAFDLAV---EANSE-----VK  668 (794)
T ss_pred             ccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhhhhhhh---hhcCcHHHHHHHHH---hhcch-----HH
Confidence            111  1122221111111  12333333333333       3334444   46788888866543   33321     23


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          255 SYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       255 ~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      |--++-.....+++..|-+|+.+|.++|
T Consensus       669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~  696 (794)
T KOG0276|consen  669 WRQLGDAALSAGELPLASECFLRARDLG  696 (794)
T ss_pred             HHHHHHHHhhcccchhHHHHHHhhcchh
Confidence            8888999999999999999999998776

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=80.56  E-value=16  Score=35.10  Aligned_cols=63  Identities=19%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      +.=..+.+.++++.|+.+-++.|.++|+.+   .-+--+|..|..+|.+.-|+++++..++.=.+|
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp---~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDP---YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCCh---hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            445567889999999999999999999842   236678999999999999999999987765554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-08
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-08
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	9e-08
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	1e-07
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-07
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-07
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	2e-07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	2e-07
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-07
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	5e-07
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	5e-07
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	6e-07
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	6e-07
2opg_A	98	Multiple PDZ domain protein; structural protein, s	8e-07
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	8e-07
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	9e-07
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	1e-06
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	1e-06
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	1e-06
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-06
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-06
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	2e-06
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-06
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	2e-06
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-06
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-06
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	2e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-05
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	2e-06
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	3e-06
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	3e-06
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	3e-06
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	4e-06
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-05
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	4e-06
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	5e-06
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	6e-06
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	6e-06
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	7e-06
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	7e-06
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	7e-06
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	7e-06
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	8e-06
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	9e-06
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	9e-06
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	9e-06
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	9e-06
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-05
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-05
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	1e-05
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-05
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	1e-05
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-05
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-05
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	1e-05
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	2e-05
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-05
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	2e-05
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-05
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-05
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-05
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	2e-05
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-05
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-05
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	2e-05
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	3e-05
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	3e-05
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	3e-05
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	3e-05
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	4e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	4e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-04
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	4e-05
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	4e-05
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	4e-05
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-05
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	4e-05
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	5e-05
2awx_A	105	Synapse associated protein 97; membrane protein, s	5e-05
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	5e-05
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	6e-05
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	7e-05
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	7e-05
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	8e-05
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	1e-04
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-04
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	6e-04
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	1e-04
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	1e-04
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	1e-04
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	1e-04
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	1e-04
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-04
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	1e-04
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	1e-04
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	1e-04
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	1e-04
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-04
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	2e-04
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-04
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-04
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	2e-04
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-04
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	2e-04
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	3e-04
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	3e-04
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-04
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	3e-04
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	4e-04
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	4e-04
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	5e-04
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	6e-04
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	6e-04
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	7e-04
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	7e-04
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	7e-04
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	8e-04

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 64  ETEAQASPEAESGSEEQE-EKYEEYEVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGS 117
                 S   + G+E    +  + Y VE+E    G  F    GR+     Y+  +A  G 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGP 61

Query: 118 ADKTGMFQVGDKVLA 132
           A+++G  ++GD++L 
Sbjct: 62  AERSGKMRIGDEILE 76

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 75  SGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           S   E        EVE+     GL F    G+  G  +  I PGG AD+ G  Q GD +L
Sbjct: 5   SSGPETVCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHIL 64

Query: 132 A 132
            
Sbjct: 65  K 65

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 81  EEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               E++ V++     +  GL      + G  I  +  G   +     Q GD +  
Sbjct: 4   RNSLEKFNVDLMKKAGKELGLSL-SPNEIGCTIADLIQGQYPEIDSKLQRGDIITK 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 8e-08
 Identities = 47/363 (12%), Positives = 92/363 (25%), Gaps = 122/363 (33%)

Query: 11  LYSPPPLPRTNQNPFLF----SQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETE 66
           + S   +  T     LF    S+   +  K   F+         +L     F+    +TE
Sbjct: 55  IMSKDAVSGTL---RLFWTLLSKQEEMVQK---FV-------EEVLRINYKFLMSPIKTE 101

Query: 67  A-QASPEAESGSEEQE------EKYEEYEVEIEQPY-----GLKFAKGRDGGTYIDAIAP 114
             Q S       E+++      + + +Y V   QPY      L   +       ID    
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLID---- 156

Query: 115 GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY--TIRQRVGP--LLMKMQKRYG 170
                  G+   G   +A       ++    ++   ++   ++    P  +L  +QK   
Sbjct: 157 -------GVLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLY 207

Query: 171 KMEQTGELSEKEIIRAERNSGVISNRVREIQMQ--------------------------- 203
           +++             +     I   +R +                              
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 204 -----------NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT--PEE 250
                      +++                L        E  +      L  +P   P E
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDE-VKSLLLKYLDCRPQDLPRE 321

Query: 251 ---------SSVAS--------------YNVACCYSKLNQV-KAGLSALEDALL-AGYED 285
                    S +A                N      KL  + ++ L+ LE A     ++ 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVN----CDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 286 FKV 288
             V
Sbjct: 378 LSV 380

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 73  AESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVG 127
             SGS  Q+  ++ + V++E    G  F    GR+     Y+  +A  G A + G  +VG
Sbjct: 1   GSSGSSGQD--FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVG 58

Query: 128 DKVLA 132
           D+++ 
Sbjct: 59  DQIIE 63

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 73  AESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD----GGTYIDAIAPGGSADKTGMFQ 125
             SGS  Q      + VE+     G       GRD        +  +   G A + G  +
Sbjct: 1   GSSGSSGQAS--GHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLE 58

Query: 126 VGDKVLA 132
           VGD VL 
Sbjct: 59  VGDLVLH 65

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 76  GSEEQEEKYEE-YEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
           G             ++ E    +P G+           +  I  GG   + G   VGD++
Sbjct: 2   GHHHHHHSGHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEI 61

Query: 131 LA 132
           L 
Sbjct: 62  LE 63

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 85  EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E++ V++     +  GL  +   + G  I  +  G   +     Q GD +  
Sbjct: 2   EKFNVDLMKKAGKELGLSLS-PNEIGCTIADLIQGQYPEIDSKLQRGDIITK 52

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMF 124
            SPE      E++   E   + I       G     G DG G +I  I  GG AD +G  
Sbjct: 1   GSPEFLG---EEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGEL 57

Query: 125 QVGDKVLA 132
           + GD++L+
Sbjct: 58  RKGDQILS 65

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 85  EEYEVEI---EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E EV +   E   GL       G  +I  I  GG  D      VGD + +
Sbjct: 5   IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIES 55

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 13/75 (17%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEI--EQPYGLKFA---------KGRDGGTYIDAIAPGGS 117
            S  +  GS+     +E Y VE+  +    L             G   G Y+ ++ PG +
Sbjct: 1   GSSGSSGGSDSSL--FETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSA 58

Query: 118 ADKTGMFQVGDKVLA 132
           A   G  QV DK++A
Sbjct: 59  AYHNGHIQVNDKIVA 73

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF---------AKGRDGGTYIDAIAPGGSA 118
            S  +   +   +    E E+ +   P GL F             D G Y+  I   G+A
Sbjct: 1   GSSGSSGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAA 60

Query: 119 DKTGMFQVGDKVLA 132
              G  Q GDK+L+
Sbjct: 61  ALDGRLQEGDKILS 74

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMF 124
            + E    S           V IE     P G    +       I  I  GG+A+K+G+ 
Sbjct: 9   ITDERVYESIGHYGGETVKIVRIEKARDIPLGATV-RNEMDSVIISRIVKGGAAEKSGLL 67

Query: 125 QVGDKVLA 132
             GD+VL 
Sbjct: 68  HEGDEVLE 75

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 54  KPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRD--------- 104
           KP + ++   +    +S        E   +    +   E+P G     G           
Sbjct: 3   KPHIVISMPQDFRPVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLE 62

Query: 105 --GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              G +I  + PGG A  TG+  V D+VL 
Sbjct: 63  KVPGIFISRLVPGGLAQSTGLLAVNDEVLE 92

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 75  SGSEEQEEKYEEYEVEIEQPYGLKF-------AKGRDGGTYIDAIAPGGSADKTGMFQVG 127
            GS+ +E   E   V +++  G+         A     G Y+ ++  GG+AD  G    G
Sbjct: 3   LGSDHKEP--EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAG 60

Query: 128 DKVLA 132
           D++L+
Sbjct: 61  DQLLS 65

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 84  YEEYEVEIE----QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLA 132
            +   + ++    +  GL     R+  G ++  I  GG AD  G    GD++L 
Sbjct: 3   SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILM 56

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 85  EEYEVEIE-QPYGLKF--AKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E  +EI     GL      G D   G   I  +   G+A K G    GD++L 
Sbjct: 4   CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILE 57

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 70  SPEAESGSEEQEEKYEEYEVEI--EQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGM 123
           S   E    E        +V +  E   GL  +    K       I  I PG  AD+ G 
Sbjct: 12  SGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG 71

Query: 124 FQVGDKVLA 132
             VGD +LA
Sbjct: 72  LHVGDAILA 80

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 76  GSEEQEEKYEEYEVEIE-QPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
           GS      Y+E +V +     G  F             I A+   GSAD+ G    GD++
Sbjct: 1   GSS-GSSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDEL 59

Query: 131 LA 132
           + 
Sbjct: 60  VY 61

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 62  ASETEAQASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD-----GGTYIDAIA 113
           +S   A ++  A   S E   +     V +E    GL F    G+          I+ I 
Sbjct: 6   SSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIF 65

Query: 114 PGGSADKTGMFQVGDKVLA 132
            G +++++   Q GD++L 
Sbjct: 66  KGAASEQSETVQPGDEILQ 84

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 85  EEYEVEIE-QPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               VE+     GL F     K ++   YI  + PGG AD+ G  + GD++L+
Sbjct: 5   SSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLS 57

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 73  AESGSEEQEEKYEEYEVEIE-QPYGLKFA----------KGRDGGTYIDAIAPGGSADKT 121
           + S  E    + EE  + I  Q  GL  +          KG D G +I  ++  G A + 
Sbjct: 3   SGSSGEPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA 62

Query: 122 GMFQVGDKVLA 132
           G+ +VGDK+L 
Sbjct: 63  GV-RVGDKLLE 72

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD---GGTYIDAIAPGGSADKTG 122
            S  +   +       +E  +EI     GL      G+D       I  +   G+A + G
Sbjct: 1   GSSGSSGPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDG 60

Query: 123 MFQVGDKVLA 132
               GD++L 
Sbjct: 61  RLWAGDQILE 70

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 9/57 (15%)

Query: 85  EEYEVEIEQ-PYGLKF--------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E ++VE+ +   GL           K    G ++ +I    + +  G  Q+GD+++A
Sbjct: 4   ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIA 60

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 85  EEYEVEIE-QPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             Y VE++     L       +       I ++  GG A++TG   +GD++LA
Sbjct: 5   IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILA 57

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 44  SGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--- 99
           S           +    + +E     +  AE   E++ E+ E + VE+E    GL     
Sbjct: 39  STAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISII 98

Query: 100 -------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                        G ++  +  GG+A + G  QV D ++ 
Sbjct: 99  GMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 138

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 12/70 (17%)

Query: 75  SGSEEQEEKYEEYEVEIE---QPYGLKF---------AKGRDGGTYIDAIAPGGSADKTG 122
           S        +  Y VE+        L             G   G Y+ ++ PG +A   G
Sbjct: 2   SHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDG 61

Query: 123 MFQVGDKVLA 132
             +  DK+L 
Sbjct: 62  RIEPNDKILR 71

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 84  YEEYEVEIE-QPYGLKFA---------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           ++  E+ +E    GL F+            D G +I  I PGG+A   G   V D VL 
Sbjct: 3   FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLR 61

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 76  GSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVL 131
           G  E++   E   + I       G     G  G G +I  I  GG AD +G  + GD++L
Sbjct: 2   GLGEEDIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQIL 61

Query: 132 A 132
           +
Sbjct: 62  S 62

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 76  GSEEQEEKYEEYEVEIEQPYGLKFA-KGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           GS   E       +   +  GL F  K R       I  +  GG+A+++G+ Q GD +LA
Sbjct: 1   GSHMIEPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILA 60

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 55  PSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYID 110
                A    +  + SP A+    E++   E   + I       G     G DG G +I 
Sbjct: 277 TDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFIS 336

Query: 111 AIAPGGSADKTGMFQVGDKVLA 132
            I  GG AD +G  + GD++L+
Sbjct: 337 FILAGGPADLSGELRKGDQILS 358

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 70  SPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRD-------GGTYIDAIAPGGSAD 119
           + EA       E + E  E+ +E      G   A G D          +I  I PGG+A 
Sbjct: 44  TLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAA 103

Query: 120 KTGMFQVGDKVL 131
           + G  +V D +L
Sbjct: 104 QDGRLRVNDSIL 115

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 81  EEKYEEYEVEIE-QPYGLKF---------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
           +    E E+ +   P GL F             D G Y+  I   G+A   G  Q GDK+
Sbjct: 3   DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI 62

Query: 131 LA 132
           L+
Sbjct: 63  LS 64

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 67  AQASPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGM 123
           +  S   E   +    + E   V+++   +P G+    G  GG Y+  +  G  A + G+
Sbjct: 2   SSGSSGGERRKDRPYVE-EPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGL 60

Query: 124 FQVGDKVLA 132
            + GD++L 
Sbjct: 61  -EYGDQLLE 68

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 75  SGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKV 130
           S      +  E  ++ +       G     G DG G ++  I  GG AD +G  + GD++
Sbjct: 5   SSGRPGGDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRI 64

Query: 131 LA 132
           L+
Sbjct: 65  LS 66

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 78  EEQEEKYEEYEVEI--EQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           ++ +      +V +  E   GL  +    K       I  I PG  AD+ G   VGD +L
Sbjct: 2   KKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAIL 61

Query: 132 A 132
           A
Sbjct: 62  A 62

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 85  EEYEVEIE----QPYGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E  EV +       +G++                I  I     A++ G+ Q+GD+V+A
Sbjct: 6   ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 77  SEEQEEKYEEYEVEIEQP----YGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGD 128
           +E        + V++ +      G+  +            I  I  G  A +TG  ++GD
Sbjct: 99  AESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGD 158

Query: 129 KVLA 132
           K+LA
Sbjct: 159 KLLA 162

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%)

Query: 85  EEYEVEIE-QPYGLKFA----------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           EE  + I  Q  GL  +          KG D G +I  ++  G A + G+ +VGDK+L 
Sbjct: 3   EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGV-RVGDKLLE 60

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 62  ASETEAQASPEAESGSEEQEEKYEEYEVEIEQP--YGLKF-------AKGRDGGTYIDAI 112
           +S +    + +  S  ++  +  +   ++IE+P   GL F               ++  +
Sbjct: 2   SSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDV 61

Query: 113 APGGSADKTGMFQVGDKVLA 132
            PG  AD+    +  D++LA
Sbjct: 62  QPGSVADRDQRLKENDQILA 81

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 15/80 (18%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEI--EQPYGLKF--AKGRDG-----------GTYIDAI 112
            +S           +  +   VE+  E    L      GR             G +I  +
Sbjct: 7   HSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHV 66

Query: 113 APGGSADKTGMFQVGDKVLA 132
                A K G  + GD+++ 
Sbjct: 67  LEDSPAGKNGTLKPGDRIVE 86

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 70  SPEAESGSEEQEEKYEEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAPGGSADKT 121
                 GS   ++  +   ++++    GL F         G     Y+  I P G+A + 
Sbjct: 15  ENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD 74

Query: 122 GMFQVGDKVLA 132
           G  + GD+++ 
Sbjct: 75  GRLKAGDRLIE 85

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 79  EQEEKYEEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
             ++  +   ++++    GL F         G     Y+  I P G+A + G  + GD++
Sbjct: 5   NTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRL 64

Query: 131 LA 132
           + 
Sbjct: 65  IE 66

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 13/70 (18%)

Query: 76  GSEEQEEKYEEYEVEIE--QPYGLKF-----------AKGRDGGTYIDAIAPGGSADKTG 122
           GS       +  +V I   +  G  F                    I  I  G  AD+  
Sbjct: 1   GSSGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCA 60

Query: 123 MFQVGDKVLA 132
             +VGD++LA
Sbjct: 61  KLKVGDRILA 70

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEI---EQPYGLKFAKGRD---GGTYIDAIAPGGSADKTG 122
            S  A +    ++   ++  +     E    L    G D   G   + A+  GG+A++ G
Sbjct: 1   GSEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHG 60

Query: 123 MFQVGDKVLA 132
               GD+++A
Sbjct: 61  GVVKGDEIMA 70

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 86  EYEVEIE-QPYGLKF----AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E ++ +  +  G  F            YI  I P G+AD  G  + GD++++
Sbjct: 3   EQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELIS 54

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 85  EEYEVEIE-QPYGLKF--------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              EV +  +     F         + +     I ++ PGG AD+ G  + GD++L+
Sbjct: 3   RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLS 59

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 63  SETEAQASPEAESGSEEQEEKYEEYEVEIEQ-PYGLKF--AKGRDGGT---YIDAIAPGG 116
           S +   A  + +      +   E + +E+E+   GL    A  +D      ++  I P G
Sbjct: 3   SGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEG 62

Query: 117 SADKTGMFQVGDKVLA 132
            A   G  ++GD++L 
Sbjct: 63  PAAADGRMRIGDELLE 78

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 85  EEYEVEIE-----QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E  +V +      +  G+K  +  D  G +I  +  GG A + G     D+VLA
Sbjct: 3   EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLA 56

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 89  VEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           + +    +P G    K    G   +  I  GG+AD++G+  VGD++  
Sbjct: 8   IRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELRE 55

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 81  EEKYEEYEVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
           E K +    ++     G  F    G +      I ++   G A   G  + GD +++
Sbjct: 14  ELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 70

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 77  SEEQEEKYEEYEVEI--EQPYGLKFA-KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                 + E++ V++  +    L  +    + G  I  +  G   +     Q GD +  
Sbjct: 105 FRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITK 163

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 85  EEYEVEIE---QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           ++  +E++   +P G+    G++     G  I  + P G        ++ D +  
Sbjct: 18  KKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICD 72

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE-QPYGLKF--AKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           + +EVE+      L      G +     GG Y+ A+ P G+A+  G    GD+VLA
Sbjct: 5   DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 60

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEI--EQPYGLKF-------AKGRDGGTYIDAIAPGGSA 118
            +S           +   E  V I  +    L          +  D   Y+ ++ PGG  
Sbjct: 7   HSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVI 66

Query: 119 DKTGMFQVGDKVLA 132
            + G  + GD +L 
Sbjct: 67  SRDGRIKTGDILLN 80

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 72  EAESGSEEQEEKYEEYEVEIEQP---YGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQ 125
              SG+  ++       +  ++     G   A G D       +  + P G A + G  Q
Sbjct: 3   SGSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQ 62

Query: 126 VGDKVLA 132
            G++VL+
Sbjct: 63  KGNEVLS 69

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 68  QASPEAESGSE-EQEEKYEEYEVEIE--QPYGLKF-------AKGRDGGTYIDAIAPGGS 117
             S   + G+E    +      VE++      L         +   D   +I  + P G 
Sbjct: 6   HHSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGV 65

Query: 118 ADKTGMFQVGDKVLA 132
           A +T   +VGD+++ 
Sbjct: 66  AAQTQKLRVGDRIVT 80

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 65  TEAQASPEAESGSEEQE-EKYEEYEVEIEQ-PYGLKF--AKGR-------DGGTYIDAIA 113
                S   + G+E    +     E+++ + P GL F  A G        D   Y+  I 
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 62

Query: 114 PGGSADKTGMFQVGDKVLA 132
            GG+A K G  QVGD++L 
Sbjct: 63  DGGAAQKDGRLQVGDRLLM 81

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 88  EVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            V+ +    +P G+           +  I  GG   + G   VGD++  
Sbjct: 4   LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIRE 52

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 75  SGSEEQEEKYEEYEVEIE----QPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVG 127
           S  +          VEI        G+              ID I P    D++G    G
Sbjct: 5   SSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPG 64

Query: 128 DKVLA 132
           D +L+
Sbjct: 65  DHILS 69

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 63  SETEAQASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAP 114
                 +  +  + +   +   +   + +E  P GL F       +   D   Y+  +  
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFA 62

Query: 115 GGSADKTGMFQVGDKVLA 132
            G+A + G  + GD+++A
Sbjct: 63  KGAASEDGRLKRGDQIIA 80

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 62  ASETEAQASPEAESGSEEQEEKYEEYEVEIE--QPYGLKFA--------KGRDGGTYIDA 111
           +S +              +  +    E+ +      GL  +         G D G +I +
Sbjct: 2   SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKS 61

Query: 112 IAPGGSADKTGMFQVGDKVLA 132
           I  GG+A K G  ++ D+++A
Sbjct: 62  IIHGGAAFKDGRLRMNDQLIA 82

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 63  SETEAQASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGG 116
           ++    A P A      +    +   V +        G+    GR+      I  I  G 
Sbjct: 55  AQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGL 114

Query: 117 SADKTGMFQVGDKVLA 132
           +AD+T    VGD +L+
Sbjct: 115 AADQTEALFVGDAILS 130

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 75  SGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            G        +  +       GL+ A G D G ++  +     A K G+ + GD++L 
Sbjct: 21  QGHMILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGL-EEGDQILR 77

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIEQP--YGLKF--AKGRDG-----GTYIDAIAPGGSAD 119
           A  E +   +   +       E+ +P   GL F     R       G ++  I  G  A 
Sbjct: 4   ACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAH 63

Query: 120 KTGMFQVGDKVLA 132
           + G  +  D++LA
Sbjct: 64  RDGRLKETDQILA 76

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 77  SEEQEEKYEEYEVEIEQPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
           S      ++   V+++      F    G +      +  I  GG A  +   + GD+++ 
Sbjct: 3   SGSSGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVN 62

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 85  EEYEVEI--EQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +   V +      GL  +    +       I  I  G +AD+T    VGD +L+
Sbjct: 4   QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILS 57

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 62  ASETEAQASPEAESGSEEQEEKY---EEYEVEIE-QPYGLKFA-KGRDGGTYIDAIAPGG 116
            S   + +  E E  S+ +       +  + ++     GL            I  +   G
Sbjct: 1   GSSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKG 60

Query: 117 SADKTGMFQVGDKVLA 132
           +A   G+ Q GD +++
Sbjct: 61  AAASDGILQPGDVLIS 76

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 11/73 (15%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--------AKGRDGGTYIDAIAPGGSAD 119
            S  +           E   VE+     GL F                 I ++   G A+
Sbjct: 1   GSSGSSGELALWSP--EVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAE 58

Query: 120 KTGMFQVGDKVLA 132
           ++G    GD++++
Sbjct: 59  RSGGLLPGDRLVS 71

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 76  GSEEQEEKYEEYEVEIE---QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKV 130
           GS     +     +      +  G     G + G   Y+  + PG  A+K G+ +VGD++
Sbjct: 1   GSSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGL-RVGDQI 59

Query: 131 LA 132
           L 
Sbjct: 60  LR 61

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 85  EEYEVEIE-----QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E ++V +      + +G   A G  + G Y+  I P G  D  G+ +  D++L 
Sbjct: 6   ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGL-KPYDRLLQ 58

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 75  SGSEEQEEKYEEYEVEIE----QPYGLKFAKGRD------GGTYIDAIAPGGSADKTGMF 124
           S    Q    E  EV +       +G++                I  I     A++ G+ 
Sbjct: 5   SSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64

Query: 125 QVGDKVLA 132
           Q+GD+V+A
Sbjct: 65  QIGDRVMA 72

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 15/66 (22%)

Query: 82  EKYEEYEVEI--EQPYGLKF--AKGRDG-----------GTYIDAIAPGGSADKTGMFQV 126
           +  +   VE+  E    L      GR             G +I  +     A K G  + 
Sbjct: 1   QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60

Query: 127 GDKVLA 132
           GD+++ 
Sbjct: 61  GDRIVE 66

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 76  GSEEQEEKYEEYEVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVG 127
           GS          EV +E    +  G+   +   G       I  +  GG A+++G   +G
Sbjct: 1   GSSGSSGD-NCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIG 59

Query: 128 DKVLA 132
           D++ A
Sbjct: 60  DRLTA 64

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 81  EEKYEEYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                   VE+        GL  + G D  G   +  +  GG A ++    VGD + A
Sbjct: 3   GSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKA 60

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 96  GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           G    + +     I  + PGG AD+ G  + GD++L+
Sbjct: 126 GAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLS 162

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD--GGTYIDAIAPGGSADKTGM 123
           +        +  + K       ++    G  F    G +      + ++ P G A + G 
Sbjct: 3   SGSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGK 62

Query: 124 FQVGDKVLA 132
            + GD ++ 
Sbjct: 63  METGDVIVY 71

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 88  EVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
             ++     G  F    G +      I ++   G A   G  + GD +++
Sbjct: 3   HTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 52

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 13/61 (21%)

Query: 85  EEYEVEIE-QPYGLKF------------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           + +EVE+      L                 R GG Y+ A+ P G+A+  G    GD+VL
Sbjct: 9   DIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68

Query: 132 A 132
           A
Sbjct: 69  A 69

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 85  EEYEVEIEQ-PYGLKFA----------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             +   + +   GL F+          +  D G ++  IA GG+A + G  QVGD+VL+
Sbjct: 7   GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLS 65

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 85  EEYEVEIEQ-PYGLKF---------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              EV + + P GL F             D   YI  I  GG+A K G  Q+GD++LA
Sbjct: 3   TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 12/60 (20%)

Query: 85  EEYEVEIE--QPYGLKF----------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + V ++                      +  G +I  I P   A   G  +VGD++L+
Sbjct: 5   LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILS 64

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 85  EEYEVEIE-QPYGLKF---------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +  E+++   P GL F             D   Y+  I  GG+A K G  Q+GDK+LA
Sbjct: 3   KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 60

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + VE+E  P GL               G YI  + PG  A   G   +GD++L 
Sbjct: 8   YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILE 63

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 13/61 (21%)

Query: 85  EEYEVEIE-QPYGLKF------------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           +   + +      L F                  G ++  I   G A K G  Q+ D+++
Sbjct: 8   KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67

Query: 132 A 132
            
Sbjct: 68  E 68

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 73  AESGSEEQEEK-YEEYEVEIE--QPYGLKFA----------KGRDGGTYIDAIAPGGSAD 119
             SGS   EE  +E+Y V ++     G   A          +  +    I  + PGG AD
Sbjct: 1   GSSGSSGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD 60

Query: 120 KTGMFQVGDKVLA 132
             G+ Q  D+V+ 
Sbjct: 61  --GLLQENDRVVM 71

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 87  YEVEI--EQPYGLKFA-KGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             V +   +  GL F  K R       I  +  GG+A+++G+ Q GD +LA
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILA 53

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)

Query: 96  GLKFAKGRDG-------GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           G++   G++        G YI  I PGGSA++TG    G +VL 
Sbjct: 33  GIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLE 76

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 75  SGSEEQEEKYEEYEVEIE-QPYGLKFA------KGRDGGTYIDAIAPGGSADKTGMFQVG 127
             S    ++   + V    +  GL         +      YI  + PGG   K G  + G
Sbjct: 4   GSSGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPG 63

Query: 128 DKVLA 132
           D++++
Sbjct: 64  DQLVS 68

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 84  YEEYEVEIE---QPYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E  E+ +E      G   A G D          +I  I PGG+A + G  +V D +L 
Sbjct: 4   MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           D   Y+  I  GG+A K G  Q+GDK+LA
Sbjct: 129 DNSIYVTKIIEGGAAHKDGRLQIGDKILA 157

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 76  GSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDK 129
           GS         + V +E       G     G + G   ++  +  G SA++ G+  VGDK
Sbjct: 1   GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGL-CVGDK 59

Query: 130 VLA 132
           +  
Sbjct: 60  ITE 62

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 75  SGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGD 128
           S    +  ++    V ++       G     G+      +I  + P   A + G+ Q GD
Sbjct: 5   SSGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGL-QEGD 63

Query: 129 KVLA 132
           +VLA
Sbjct: 64  QVLA 67

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 84  YEEYEVEIEQ------PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
           + +  + I Q       +G        G  ++ ++  G  A+ + + QV D+++   A+ 
Sbjct: 2   FSDMRISINQTPGKSLDFGFTIKWDIPG-IFVASVEAGSPAEFSQL-QVDDEII---AIN 56

Query: 138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQ-KRYGK 171
            T+     +       + +      + M  +RYGK
Sbjct: 57  NTKF-SYNDSKEWEEAMAKAQETGHLVMDVRRYGK 90

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADKT 121
             S      +    +  +E +V +     +  GL    G + G   YI  + PG  A+ +
Sbjct: 3   SGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS 62

Query: 122 GMFQVGDKVLA 132
           G+ +VGD++L 
Sbjct: 63  GL-KVGDQILE 72

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 84  YEEYEVEIE-QPYGLKF----------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E + VE+E    GL            A     G ++  +  GG+A + G  QV D+++ 
Sbjct: 8   LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 91  IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                G       D G +I  ++P G+A + G  +VG ++L 
Sbjct: 31  ARGHAGNPRDPT-DEGIFISKVSPTGAAGRDGRLRVGLRLLE 71

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 76  GSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           GS     +     V I     +  G+ F +   G   I  I  GG   + G+  VGD + 
Sbjct: 1   GSSGSSGR----MVGIRKTAGEHLGVTF-RVEGGELVIARILHGGMVAQQGLLHVGDIIK 55

Query: 132 A 132
            
Sbjct: 56  E 56

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 85  EEYEVEIEQP---YGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               V +++     G+    G +       I  I  GGSA   G  +VG  +L 
Sbjct: 6   SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILE 59

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 14/64 (21%)

Query: 81  EEKYEEYEVEIE--QPYGLKFA----------KGRDGGTYIDAIAPGGSADKTGMFQVGD 128
              +E++ V +     +G   A          +  +    I  +  GG A+  G  Q  D
Sbjct: 3   HMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQEND 60

Query: 129 KVLA 132
           +V  
Sbjct: 61  RVAM 64

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 70  SPEAESGSEEQEEKYEEYEVEIEQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQ 125
           S  +      +E K ++  + +    GL  +      +  G +I  + PG  + + G+ +
Sbjct: 2   SSGSSGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGL-E 60

Query: 126 VGDKVLA 132
           +GD+++ 
Sbjct: 61  IGDQIVE 67

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           DGG YI +I  GG+    G  + GD +L 
Sbjct: 32  DGGIYIGSIMKGGAVAADGRIEPGDMLLQ 60

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 15/73 (20%)

Query: 75  SGSEEQEEKYEEYEVEI--EQPYGLKF--AKGRDG-----------GTYIDAIAPGGSAD 119
           S             VEI  E    L      G+             G +I  +     A 
Sbjct: 5   SSGPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAG 64

Query: 120 KTGMFQVGDKVLA 132
           KT   + GDK+L 
Sbjct: 65  KTNALKTGDKILE 77

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 73  AESGS--EEQEEKYEEYEVEIE-QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDK 129
             SGS  E   E  E+ ++ I     G  F    D    + A+  GG A++ G+ Q  D 
Sbjct: 1   GSSGSSGEGDPENGEKLQITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAGL-QQLDT 59

Query: 130 VLA 132
           VL 
Sbjct: 60  VLQ 62

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 96  GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           G K  +      +I  +  G  AD  G  + GD+VL 
Sbjct: 56  GGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLE 92

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 93  QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           + YGL+ A       ++  I+    A + G  Q GD VL 
Sbjct: 13  EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLK 48

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-----QPYGLKFAKGRDG----GTYIDAIAPGGSAD 119
           +    +   E   E+ E  EV++         GL      D     G YI  I P   A 
Sbjct: 3   SGSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAA 62

Query: 120 KTGMFQVGDKVLA 132
           K G  + GD+++ 
Sbjct: 63  KDGRIREGDRIIQ 75

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 85  EEYEVEIE-QPYGLKF----------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E + VE+E    GL                  G ++  +  GG+A + G  QV D ++ 
Sbjct: 4   ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 62

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 85  EEYEVEIE--QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
             Y V +    P+G +   G+D      I ++  GG A +  + ++GD VL+
Sbjct: 3   SNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANV-RIGDVVLS 53

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 96  GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             ++        ++  +   G A K G    GD +L 
Sbjct: 12  NEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILK 48

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 85  EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + V+I+         F         + A+  GGSA   G    GD++L 
Sbjct: 8   VRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAH--GKLFPGDQILQ 56

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 85  EEYEVEIEQPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
           + ++V +E P    F    G+D      I  + PGG A + G+  VGD VL+
Sbjct: 3   DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGV-AVGDWVLS 53

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 76  GSEEQEE-KYEEYEVEIEQPYGLKF------------AKGRDGGTYIDAIAPGGSADKTG 122
           GS    E   +E  V +E+   L F             +  D G ++  + P G A    
Sbjct: 1   GSHMGHELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--K 58

Query: 123 MFQVGDKVLA 132
           + Q GDK++ 
Sbjct: 59  LLQPGDKIIQ 68

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEIEQPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGM 123
           +   E +  +  +  K +E  ++   P GL      G + G   +I  +  GG AD  G+
Sbjct: 69  KHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGL 128

Query: 124 FQVGDKVLA 132
            QVGD+++ 
Sbjct: 129 -QVGDEIVR 136

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 105 GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              ++  I+    A + G  Q GD VL 
Sbjct: 23  SHIFVKEISQDSLAARDGNIQEGDVVLK 50

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 89  VEIE-QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           VE+     G  F         +  +  G  AD  G+ + GD++LA
Sbjct: 6   VEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGL-RAGDQILA 49

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 85  EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +  EV +        GL+     D G ++  +     A   G+ + GD+VL 
Sbjct: 4   DPREVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVGL-RFGDQVLQ 53

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 73  AESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVG 127
             SGS      +   E ++     Q YG      +D  G  I  I  G  A+K G+   G
Sbjct: 1   GSSGSSGMASTFNPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGL-LDG 59

Query: 128 DKVLA 132
           D+VL 
Sbjct: 60  DRVLR 64

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 6/32 (18%), Positives = 9/32 (28%)

Query: 101 KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                  YI  +     A   G    GD++  
Sbjct: 46  AQYCPCLYIVQVFDNTPAALDGTVAAGDEITG 77

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 85  EEYEVEIE-QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              ++ I     G  F    D    + A+  GG A++ G+ Q  D VL 
Sbjct: 3   RYRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGL-QQLDTVLQ 50

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 7/71 (9%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADK-T 121
            S   +              + ++      +G     G D      +  +APG  AD   
Sbjct: 1   GSSPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCV 60

Query: 122 GMFQVGDKVLA 132
                GD+V+ 
Sbjct: 61  PRLNEGDQVVL 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.32
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.24
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.24
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.23
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.21
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.19
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.16
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.11
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.07
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.04
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.97
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.96
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.95
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.94
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.94
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.94
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.93
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.93
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.9
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.9
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.9
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.89
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.89
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.88
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.87
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.87
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.87
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.86
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.86
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.86
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.85
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.85
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.85
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.85
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.85
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.84
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.84
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.83
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.81
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.81
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.81
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.79
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.79
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.79
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.77
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.76
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.75
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.73
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.72
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.72
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.7
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.7
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.69
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.67
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.63
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.62
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.6
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.6
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.6
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.59
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.58
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.58
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.58
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.58
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.57
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.57
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.57
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.57
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.55
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.54
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.54
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.53
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.53
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.52
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.52
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.52
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.52
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.52
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.51
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.5
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.5
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.5
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.49
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.49
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.49
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.49
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.48
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.48
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.48
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.47
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.46
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.45
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.45
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.45
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.45
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.45
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.44
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.44
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.44
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.43
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.43
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.43
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.43
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.42
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.42
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.42
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.42
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.42
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.41
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.41
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.41
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	98.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.4
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.4
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.4
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.38
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.38
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.38
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.38
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.38
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.38
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.38
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.37
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.37
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.36
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.36
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.36
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.36
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.35
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.35
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.35
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.34
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	98.34
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.34
2awx_A	105	Synapse associated protein 97; membrane protein, s	98.34
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.33
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.33
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.32
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.32
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.31
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.31
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.31
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.31
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.3
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.3
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.3
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.3
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.29
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.29
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.29
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.29
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.29
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.29
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.29
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.29
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.29
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.28
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.28
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.28
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.27
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.27
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.26
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.26
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.26
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.26
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.26
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.26
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.26
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.25
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.25
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.25
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.24
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.24
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.23
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.22
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.22
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.22
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.21
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.21
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.21
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.21
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.2
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.2
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.2
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.19
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.19
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.19
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.18
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.17
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.17
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.16
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.16
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.16
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.16
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.15
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.15
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.15
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.15
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.14
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.14
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.13
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.13
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.12
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.12
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.12
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.1
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.1
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.1
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.09
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.09
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.09
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.09
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.09
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.08
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.08
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.07
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.07
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.07
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.07
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.06
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.06
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.06
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.06
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.05
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.05
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.04
2ego_A	96	General receptor for phosphoinositides 1- associat	98.04
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.04
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.03
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.03
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.03
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.02
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.02
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.02
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.02
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.01
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.01
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.01
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.99
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	97.98
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	97.97
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	97.95
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	97.95
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	97.94
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	97.94
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	97.93
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.93
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	97.92
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	97.92
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	97.92
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	97.92
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	97.91
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.91
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.9
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.9
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	97.9
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	97.9
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	97.9
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.89
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	97.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.88
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	97.88
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	97.87
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	97.87
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	97.87
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	97.86
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.86
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	97.85
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	97.85
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	97.84
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.84
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	97.84
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	97.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.79
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	97.79
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	97.76
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	97.76
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.76
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	97.76
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	97.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.72
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	97.71
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.71
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	97.7
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	97.69
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	97.67
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	97.66
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.65
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	97.64
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.64
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.63
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	97.62
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.6
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.6
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	97.6
3khf_A	99	Microtubule-associated serine/threonine-protein ki	97.57
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.56
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.54
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	97.54
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	97.52
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	97.51
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.5
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	97.5
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.48
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	97.47
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.47
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.45
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	97.41
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	97.41
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	97.38
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	97.38
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.38
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	97.35
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.3
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	96.36
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.25
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.25
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	97.25
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.22
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.19
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.18
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	97.17
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.06
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.03
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.98
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	96.96
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	96.94
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	96.93
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	96.92
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	96.91
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.81
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	96.78
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.76
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	96.76
2kl1_A	94	YLBL protein; structure genomics, structural genom	96.74
4fgm_A	597	Aminopeptidase N family protein; structural genomi	96.72
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.65
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	96.6
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	96.6
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	96.58
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	96.52
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.42
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	96.39
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.33
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.31
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.26
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	96.26
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.22
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	96.21
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.2
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	96.17
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	96.16
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	96.09
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	95.98
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.93
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	95.67
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	95.64
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	95.51
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	95.37
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	95.21
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	95.17
3k50_A	403	Putative S41 protease; structural genomics, joint	95.16
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	95.09
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	94.88
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.72
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	94.7
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	94.55
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.39
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	94.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.29
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	94.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.55
1k32_A	1045	Tricorn protease; protein degradation, substrate g	93.31
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.31
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	92.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	91.93
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	91.82
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	91.77
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.56
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.66
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.64
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	87.48
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	86.52
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	85.78
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	85.68
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.7
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	84.0
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	83.6
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	82.77
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	81.98
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	81.93
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	81.5
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	81.14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	80.67
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	80.58
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	80.21

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.32  E-value=6.7e-12  Score=99.61  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=79.8

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      .+.+|.|+..-..++.+++  .|.+..++.+.. .-++++|..++++|+|++|++.|++||+++|++   ..+|+|+|.|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~   90 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---IKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---hHHHHHHHHH
Confidence            3445666666555555554  555555555544 344699999999999999999999999999974   5679999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          262 YSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      |..+|++++|++++++||++.+++..
T Consensus        91 ~~~~~~~~~A~~~~~~al~l~P~~~~  116 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQVDPSNEE  116 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence            99999999999999999999877654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.24  E-value=1.5e-11  Score=102.25  Aligned_cols=98  Identities=5%  Similarity=-0.044  Sum_probs=80.6

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ..++++.|.+....++.+++  .|.+...+.+.... ++++|..+++.|+|++|+++|++|++++|++   ..+|||+|.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---~~~~~~lg~  112 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---YTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---cHHHHHHHH
Confidence            45666777777666666665  66666655555444 4699999999999999999999999999974   457999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~  284 (292)
                      ||..+|++++|+.+|++|+++..+
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999865

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.24  E-value=2.3e-11  Score=96.18  Aligned_cols=64  Identities=19%  Similarity=0.252  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..++|+.+++.|+|++|++.|++||+++|++   ..+|+|+|.||..+|++++|+++|++||++..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~   74 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE   74 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence            3589999999999999999999999999974   568999999999999999999999999998754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.23  E-value=4.6e-11  Score=94.73  Aligned_cols=69  Identities=17%  Similarity=0.379  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ....++|+.+++.|+|++|++.|++||+++|++   ..+|+|+|.||.++|++++|+.+|++||++..++..
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            455699999999999999999999999999974   568999999999999999999999999999877543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.21  E-value=6.1e-11  Score=96.08  Aligned_cols=95  Identities=6%  Similarity=0.089  Sum_probs=57.7

Q ss_pred             cccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC
Q 022783          190 SGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (292)
Q Consensus       190 ~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg  266 (292)
                      .|.+.....+++.+  .+.++....+.. ...+..|..|++.|+|++|++.|+++|+++|++   ..+|+|+|.||..+|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---PKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC
Confidence            34444444555443  333333322222 223577777777777777777777777777763   456777777777777


Q ss_pred             CHHHHHHHHHHHHHhCccChh
Q 022783          267 QVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       267 q~eeALe~LekAIelG~~Df~  287 (292)
                      ++++|+.++++|+++..++..
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~  100 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKD  100 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHH
T ss_pred             chHHHHHHHHHHHHhCCCCHH
Confidence            777777777777777666543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.19  E-value=9.5e-11  Score=94.22  Aligned_cols=69  Identities=16%  Similarity=0.024  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI  289 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I  289 (292)
                      ++++|..+++.|+|++|+..|++||+++|++   ..+||++|.||..+|++++|+.+|++|+++..++-..|
T Consensus        66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  134 (162)
T 3rkv_A           66 YANMSQCYLNIGDLHEAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV  134 (162)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHH
Confidence            4699999999999999999999999999974   56899999999999999999999999999988776443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.19  E-value=4e-11  Score=103.13  Aligned_cols=97  Identities=10%  Similarity=-0.002  Sum_probs=78.5

Q ss_pred             HhhccccchhhHHHHHHH--hhHHHHHhhHh-------HH------HHHHHHHHHHHcCCHHHHHHHHHHHHcC------
Q 022783          186 AERNSGVISNRVREIQMQ--NYMKKKEQKER-------RE------QDLREGLQLYRTGKYEVAREKFESVLGS------  244 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~-------~~------~~~n~G~~L~k~gdYeeAIe~fekALel------  244 (292)
                      .+.|.|+..-.+..++++  .|.++..+.+.       ..      -+.|+|..+.++|+|++|+.+|++||++      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            345666666666666664  67777666665       21      3459999999999999999999999999      


Q ss_pred             -CCCccchhHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          245 -KPTPEESSVAS----YNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       245 -dP~~~d~a~a~----YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                       +|+   ...+|    ||+|.++..+|++++|+.+|++||++-.+|
T Consensus        93 ~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           93 LNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             TTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence             996   35678    999999999999999999999999987654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.16  E-value=3.7e-11  Score=95.00  Aligned_cols=100  Identities=12%  Similarity=0.105  Sum_probs=80.6

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc----hhHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASY  256 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d----~a~a~Y  256 (292)
                      -.+++|.|++.-..++++++  .|.++..+.+.... +.++|..++++|+|++|++.|++||+++|+...    .+.+|+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            45666777777777777675  66666666555444 459999999999999999999999999886422    256899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          257 NVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       257 N~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      |+|.||..+|++++|++.+++||+...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            999999999999999999999999854

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.16  E-value=7.4e-11  Score=101.45  Aligned_cols=75  Identities=15%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc---------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--
Q 022783          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------SSVASYNVACCYSKLNQVKAGLSALEDALLA--  281 (292)
Q Consensus       213 ~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d---------~a~a~YN~AccyakLgq~eeALe~LekAIel--  281 (292)
                      .+.+.+++.|+.+++.|+|++|+++|++||+++|++.+         ...+|+|+|.|+.++|++++|+.+|++||++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            34577889999999999999999999999999998311         1348999999999999999999999999999  


Q ss_pred             -----CccChh
Q 022783          282 -----GYEDFK  287 (292)
Q Consensus       282 -----G~~Df~  287 (292)
                           ..++.+
T Consensus        89 ~~~e~~pd~~~   99 (159)
T 2hr2_A           89 RRGELNQDEGK   99 (159)
T ss_dssp             HHCCTTSTHHH
T ss_pred             ccccCCCchHH
Confidence                 766543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.11  E-value=1.9e-10  Score=88.24  Aligned_cols=93  Identities=12%  Similarity=0.054  Sum_probs=72.6

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      +++.|...-..++.+++  .|.+...+.+.. .-++++|..+++.|+|++|+..|+++|+++|++   ..+|+++|.||.
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~   83 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHH
Confidence            34445444444444444  444444444443 345699999999999999999999999999974   567999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhC
Q 022783          264 KLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG  282 (292)
                      .+|++++|+.++++|+++.
T Consensus        84 ~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           84 AVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhC
Confidence            9999999999999999997

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.09  E-value=3e-10  Score=91.47  Aligned_cols=100  Identities=15%  Similarity=0.015  Sum_probs=79.2

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ..++++.|.+....++.+++  .|.+...+.+.. .-++++|..+++.|+|++|+..|+++|+++|++   ..+|+|+|.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~   87 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---SKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence            34555666666665555554  555555544443 345699999999999999999999999999974   568999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ||..+|++++|+.++++|+++..++.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCch
Confidence            99999999999999999999987653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.08  E-value=3.8e-10  Score=93.71  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=70.1

Q ss_pred             hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .+.+...+.+.. ...+++|..+++.|+|++|+..|++++.++|++   ..+|+|+|.||..+|++++|+.+|++|+++.
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            566666666655 345699999999999999999999999999974   5679999999999999999999999999998


Q ss_pred             ccChh
Q 022783          283 YEDFK  287 (292)
Q Consensus       283 ~~Df~  287 (292)
                      +++..
T Consensus       101 P~~~~  105 (151)
T 3gyz_A          101 KNDYT  105 (151)
T ss_dssp             SSCCH
T ss_pred             CCCcH
Confidence            87643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.07  E-value=3.8e-10  Score=91.54  Aligned_cols=98  Identities=10%  Similarity=-0.040  Sum_probs=76.4

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ..++++.|.+....++.+++  .|.+.....+.. .-++++|..+++.|+|++|++.|++++.++|++   ..+|+|+|.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~   97 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---PRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHH
Confidence            34455555555555555554  455544444443 344699999999999999999999999999974   457999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~  284 (292)
                      ||..+|++++|+.++++|+++..+
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcC
Confidence            999999999999999999998655

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.06  E-value=2.9e-10  Score=91.97  Aligned_cols=78  Identities=15%  Similarity=0.133  Sum_probs=65.0

Q ss_pred             hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .+.+.....+.. ...+.+|..+++.|+|++|++.|+++++++|++   ..+|+|+|.||.++|++++|+.++++||++.
T Consensus        95 ~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A           95 ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF---IRAYQSIGLAYEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence            344444443333 334699999999999999999999999999974   5679999999999999999999999999997


Q ss_pred             cc
Q 022783          283 YE  284 (292)
Q Consensus       283 ~~  284 (292)
                      .+
T Consensus       172 p~  173 (184)
T 3vtx_A          172 EK  173 (184)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.06  E-value=3.9e-10  Score=89.36  Aligned_cols=97  Identities=12%  Similarity=0.001  Sum_probs=74.2

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      .++++.|.+....++.+++  .|.+.....+.. .-++.+|..+++.|+|++|+..|++++.++|++   ..+|+|+|.|
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~   95 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHH
Confidence            3344445444444444443  444444444443 345699999999999999999999999999974   4579999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCcc
Q 022783          262 YSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~~  284 (292)
                      |..+|++++|+.++++|+++..+
T Consensus        96 ~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.04  E-value=1.2e-09  Score=83.76  Aligned_cols=69  Identities=14%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...++++|..+++.|+|++|+..|+++|+++|++   ..+|+|+|.||..+|++++|+.++++|+++..++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   72 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV   72 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            3456799999999999999999999999999974   56899999999999999999999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.04  E-value=7.9e-10  Score=81.54  Aligned_cols=67  Identities=19%  Similarity=0.313  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ..++++|..++..|+|++|++.|+++++++|++   ..+|+|+|.||..+|++++|+.+|++|+++..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            345699999999999999999999999999974   5679999999999999999999999999997765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.97  E-value=2.8e-09  Score=81.78  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      .-.+++|..+++.|+|++|+..|+++++++|++   ..+++|+|.||..+|++++|+..+++|++...++
T Consensus        28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            445699999999999999999999999999974   5679999999999999999999999999997654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.96  E-value=2.1e-09  Score=81.29  Aligned_cols=65  Identities=11%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .-.+++|..+++.|+|++|+..|+++++++|++   ..+|+++|.||..+|++++|+..+++|+++..
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            345799999999999999999999999999974   45799999999999999999999999998753

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.95  E-value=1.6e-09  Score=82.18  Aligned_cols=69  Identities=12%  Similarity=0.137  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ..+..|..+++.|+|++|+..|++++..+|+......+++++|.||..+|++++|+..++++++...++
T Consensus        41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            456999999999999999999999999999864446789999999999999999999999999986554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.94  E-value=7.8e-10  Score=86.80  Aligned_cols=93  Identities=14%  Similarity=0.056  Sum_probs=69.5

Q ss_pred             HHhhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      ..++..|....++.     .|.+.....+.. .-++.+|..+...|++++|+..|++|++++|++   ..+|+++|.||.
T Consensus        25 ~~~~~~g~~~~A~~-----~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~la~~~~   96 (121)
T 1hxi_A           25 LSMLKLANLAEAAL-----AFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHTTCHHHHHH-----HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHH-----HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence            34445555544433     444444444443 445699999999999999999999999999974   457999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCccC
Q 022783          264 KLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~D  285 (292)
                      .+|++++|+..+++++++..++
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-----
T ss_pred             HcCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999886543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.94  E-value=1.4e-09  Score=111.70  Aligned_cols=98  Identities=13%  Similarity=0.076  Sum_probs=66.3

Q ss_pred             HhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          186 AERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      ++.|.|.+...+++.+++  .|.++.++.+.. .-++++|+.+.++|+|++|++.|++||+++|++   ..+|+|+|.+|
T Consensus        45 a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~  121 (723)
T 4gyw_A           45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIH  121 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence            455666666666666664  555555555443 334577777777777777777777777777753   45677777777


Q ss_pred             HhcCCHHHHHHHHHHHHHhCccCh
Q 022783          263 SKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+|++++|+++|++||++..++.
T Consensus       122 ~~~g~~~eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A          122 KDSGNIPEAIASYRTALKLKPDFP  145 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCh
Confidence            777777777777777777766543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.94  E-value=2.9e-09  Score=81.51  Aligned_cols=94  Identities=13%  Similarity=0.073  Sum_probs=71.7

Q ss_pred             hccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          188 RNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       188 rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      ++.|.+....++.+++  .|.+.....+.. .-++++|..++..|+|++|+..|+++++++|+.   ..+|+++|.||..
T Consensus        13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~   89 (137)
T 3q49_B           13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLE   89 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHH
Confidence            3444444444444443  444444444333 345699999999999999999999999999974   5679999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCcc
Q 022783          265 LNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~~  284 (292)
                      +|++++|+.++++|+++..+
T Consensus        90 ~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           90 MESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHChh
Confidence            99999999999999998655

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.93  E-value=2.4e-09  Score=85.93  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--------CCCc-------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGS--------KPTP-------EESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALel--------dP~~-------~d~a~a~YN~AccyakLgq~eeALe~LekAI  279 (292)
                      ...++++|+.+++.|+|++|+..|++||.+        +|..       +....+|+|+|.||.++|++++|+.+|++||
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345669999999999999999999999998        3321       1235689999999999999999999999999


Q ss_pred             HhCccChh
Q 022783          280 LAGYEDFK  287 (292)
Q Consensus       280 elG~~Df~  287 (292)
                      ++...+.+
T Consensus        91 ~~~p~~~~   98 (162)
T 3rkv_A           91 KREETNEK   98 (162)
T ss_dssp             HHSTTCHH
T ss_pred             hcCCcchH
Confidence            99876543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.93  E-value=1.7e-09  Score=87.42  Aligned_cols=100  Identities=13%  Similarity=-0.019  Sum_probs=79.0

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ..+.++.|.+.-.+++.+++  .|.+..++.+.. .-++++|..+.+.|+|++|+..|+++|+++|++   ..+|+|+|.
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~  107 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ---KDLVLKIAE  107 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence            34456666666666666665  555555555554 445699999999999999999999999999974   457999999


Q ss_pred             HHHhcCCHHHHHHH-HHHHHHhCccCh
Q 022783          261 CYSKLNQVKAGLSA-LEDALLAGYEDF  286 (292)
Q Consensus       261 cyakLgq~eeALe~-LekAIelG~~Df  286 (292)
                      +|.++|++++|++. +++|+++.+++.
T Consensus       108 ~~~~~~~~~~aa~~~~~~al~l~P~~~  134 (150)
T 4ga2_A          108 LLCKNDVTDGRAKYWVERAAKLFPGSP  134 (150)
T ss_dssp             HHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence            99999999988776 699999987653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.90  E-value=4.4e-09  Score=96.28  Aligned_cols=100  Identities=10%  Similarity=0.038  Sum_probs=82.1

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR----------------EQDLREGLQLYRTGKYEVAREKFESVLGSK  245 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~----------------~~~~n~G~~L~k~gdYeeAIe~fekALeld  245 (292)
                      ..++++.|.+.....+.+++  .|.+...+.+..                .-++++|..+++.|+|++|+..|++||+++
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            46677788877777777775  555555444433                344699999999999999999999999999


Q ss_pred             CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          246 PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       246 P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      |++   ..+|||+|.||..+|++++|+.+|++|+++..++.
T Consensus       227 p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          227 SNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             CCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence            974   56899999999999999999999999999987653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.90  E-value=6.4e-09  Score=83.59  Aligned_cols=69  Identities=19%  Similarity=0.144  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...++++|..+++.|+|++|++.|+++|+++|++   ..+|+|+|.||..+|++++|+.++++|+++..++.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   79 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS   79 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            3456799999999999999999999999999974   56899999999999999999999999999987654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.90  E-value=2.6e-09  Score=109.57  Aligned_cols=99  Identities=17%  Similarity=0.109  Sum_probs=73.2

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      .++.|.|++...+++.+++  .|.++.++.++..+ .+++|..|.++|+|++|++.|++||+++|++   ..+|+|+|.+
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~nLg~~   86 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---ADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Confidence            4566777777777777775  55555555554433 4588888888888888888888888888863   4568888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          262 YSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~~Df  286 (292)
                      |..+|++++|++++++||++..++.
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~  111 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFA  111 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            8888888888888888888876543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.90  E-value=4.9e-09  Score=77.04  Aligned_cols=66  Identities=23%  Similarity=0.279  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV-ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~-a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      +++|..+++.|+|++|+..|+++++.+|++   .. +|+++|.||..+|++++|+.++++|+++..++..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            588999999999999999999999999974   45 7999999999999999999999999999876543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.90  E-value=6.9e-09  Score=84.08  Aligned_cols=80  Identities=15%  Similarity=0.178  Sum_probs=66.7

Q ss_pred             hHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          205 YMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       205 Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      |.+...+.+.. ...++.|..+++.|+|++|+..|++++.++|++   ..+|+|+|.||..+|++++|+.+|++|+++..
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            33333334433 345699999999999999999999999999974   56799999999999999999999999999987


Q ss_pred             cChh
Q 022783          284 EDFK  287 (292)
Q Consensus       284 ~Df~  287 (292)
                      ++..
T Consensus        87 ~~~~   90 (148)
T 2vgx_A           87 XEPR   90 (148)
T ss_dssp             TCTH
T ss_pred             CCch
Confidence            7643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.89  E-value=5.6e-09  Score=87.35  Aligned_cols=98  Identities=12%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             HhhccccchhhHHHHHHH--hhHHHHHhhH--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          186 AERNSGVISNRVREIQMQ--NYMKKKEQKE--RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~--~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      ++++.|.+.-..++.+++  .|.+...+.+  .....++.|..++..|+|++|+..|+++++++|+.   ..+|+++|.|
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~   85 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---ANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---HHHHHHHHHH
Confidence            445555555555555554  4544544443  23445689999999999999999999999999973   5679999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          262 YSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~~Df  286 (292)
                      |..+|++++|+..+++|+++..++.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcH
Confidence            9999999999999999999987654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.89  E-value=3.8e-09  Score=79.27  Aligned_cols=99  Identities=10%  Similarity=0.074  Sum_probs=74.2

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~-~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ..++++.|.+....++.+++  .|.+.....+. ..-.++.|..++..|+|++|+..|+++++++|+.   ..+|+++|.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~   92 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---IKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---hHHHHHHHH
Confidence            34444555554444444443  33333333332 2445699999999999999999999999999973   467999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~D  285 (292)
                      +|..+|++++|+..+++++++...+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999997654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.88  E-value=3.8e-09  Score=76.69  Aligned_cols=69  Identities=17%  Similarity=0.072  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-NQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL-gq~eeALe~LekAIelG~~D  285 (292)
                      .-.++.|..++..|+|++|+..|+++++++|+. ....+|+++|.||..+ |++++|+++++++++....+
T Consensus        41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           41 KYWLMKGKALYNLERYEEAVDCYNYVINVIEDE-YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT-TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            345699999999999999999999999999971 1356799999999999 99999999999999887643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=8.3e-09  Score=79.02  Aligned_cols=94  Identities=9%  Similarity=0.043  Sum_probs=72.1

Q ss_pred             HHhhccccchhhHHHHHHHhhHHHHHhhHh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQNYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~----~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ...+..|+...++..++     +.....+.    ..-+++.|..+++.|+|++|+..|+++++++|++   ..+|+++|.
T Consensus        36 ~~~~~~~~~~~A~~~~~-----~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~  107 (148)
T 2dba_A           36 NELFKCGDYGGALAAYT-----QALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQ  107 (148)
T ss_dssp             HHHHTTTCHHHHHHHHH-----HHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---HHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHH-----HHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---HHHHHHHHH
Confidence            34445555554444333     33333332    2345699999999999999999999999999974   567999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ||..+|++++|+..+++|+++..++.
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            99999999999999999999987653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.87  E-value=1.1e-08  Score=79.84  Aligned_cols=100  Identities=14%  Similarity=0.054  Sum_probs=78.0

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ...+++.|.+....++.+.+  .|.+.....+.. .-.++.|..++..|+|++|+..|+++++++|+.   ..+|+++|.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~   89 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHH
Confidence            45556666666555555554  444444433332 445699999999999999999999999999974   567999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ||..+|++++|+..+++|+++...+.
T Consensus        90 ~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999987654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.87  E-value=7.1e-09  Score=85.12  Aligned_cols=100  Identities=19%  Similarity=0.239  Sum_probs=76.7

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc------------
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------  249 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~------------  249 (292)
                      .+.++.|.+...+++.+++  .|.+.....+.. ..++++|..+++.|+|++|++.|++++++.|++.            
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  117 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK  117 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccC
Confidence            3556666666666666665  444444443333 4456999999999999999999999999888643            


Q ss_pred             -chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          250 -ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       250 -d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                       ....+|+|+|.||..+|++++|+..+++|+++..+
T Consensus       118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A          118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             ccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence             23468999999999999999999999999999765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.86  E-value=7.3e-09  Score=75.60  Aligned_cols=68  Identities=16%  Similarity=0.085  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      .-.++.|..++..|+|++|+..|+++++++|+.   ..+|+++|.+|..+|++++|+..+++++++..++.
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            445699999999999999999999999999973   46799999999999999999999999999987653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.86  E-value=8.7e-09  Score=86.98  Aligned_cols=64  Identities=17%  Similarity=0.116  Sum_probs=59.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       221 ~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      +|..+.+.|+|++|+..|+++|+++|++   ..+|+|+|.+|..+|++++|+.++++|+++.+++..
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999999999999974   567999999999999999999999999999887543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.86  E-value=1.1e-08  Score=84.59  Aligned_cols=100  Identities=13%  Similarity=0.055  Sum_probs=77.5

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHh-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKER-----------------REQDLREGLQLYRTGKYEVAREKFESVLGS  244 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~-----------------~~~~~n~G~~L~k~gdYeeAIe~fekALel  244 (292)
                      ...+++.|.+.-..++.+++  .|.+...+.+.                 ..-.+++|..+++.|+|++|+..|+++|++
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45666777766666666554  44444332211                 133469999999999999999999999999


Q ss_pred             CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          245 KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       245 dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      +|+.   ..+|+++|.||..+|++++|+..+++|+++..++.
T Consensus       118 ~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  156 (198)
T 2fbn_A          118 DKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  156 (198)
T ss_dssp             STTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             Cccc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            9974   56899999999999999999999999999976653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.85  E-value=1.1e-08  Score=80.12  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ..+++|..+++.|+|++|+..|+++++++|++   ..+|+++|.||..+|++++|+.+|++|+++..++..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~   86 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA   86 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            35789999999999999999999999999974   568999999999999999999999999999887644

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.85  E-value=1.5e-08  Score=80.20  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ...+++|..+++.|+|++|+..|++++.++|++   ..+|+++|.||..+|++++|+.++++|+++..++..
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   87 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR   87 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            345699999999999999999999999999974   467999999999999999999999999999877543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.85  E-value=1.5e-08  Score=94.96  Aligned_cols=99  Identities=19%  Similarity=0.173  Sum_probs=76.8

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHH----------------hhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKE----------------QKERR-EQDLREGLQLYRTGKYEVAREKFESVLGS  244 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~----------------lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALel  244 (292)
                      ..++++.|+.....++.+++  .|.+...                +.... .-++++|..++++|+|++|++.|++||++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34556666666555555554  4444433                22222 33469999999999999999999999999


Q ss_pred             CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          245 KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       245 dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      +|++   ..+||++|.||..+|++++|+.+|++|+++..++
T Consensus       303 ~p~~---~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          303 DPSN---TKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  340 (370)
T ss_dssp             CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             Cchh---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            9974   5689999999999999999999999999997664

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.85  E-value=5.5e-09  Score=99.87  Aligned_cols=99  Identities=14%  Similarity=0.116  Sum_probs=78.0

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR----------------EQDLREGLQLYRTGKYEVAREKFESVLGSK  245 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~----------------~~~~n~G~~L~k~gdYeeAIe~fekALeld  245 (292)
                      ..++++.|++.....+.+++  .|.++..+.+..                .-++++|..++++|+|++|+..|++||+++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45667777777666666665  555554443332                334599999999999999999999999999


Q ss_pred             CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          246 PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       246 P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      |++   ..+|||+|.||..+|++++|+.+|++|+++...+
T Consensus       348 p~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          348 SAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             Ccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            974   5689999999999999999999999999997654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.85  E-value=3.5e-09  Score=91.00  Aligned_cols=87  Identities=16%  Similarity=0.185  Sum_probs=70.6

Q ss_pred             hHHHHHH--HhhHHHHHhhHhHHH-HHHHHHHHHHcCCH----------HHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          196 RVREIQM--QNYMKKKEQKERREQ-DLREGLQLYRTGKY----------EVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       196 ~l~eiqe--a~Y~kkk~lk~~~~~-~~n~G~~L~k~gdY----------eeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      ++..+++  ..|.+.-++.+...+ +++.|.++.+.+++          ++||..|++||+++|+.   ..+|||++.+|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~---~~A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---DEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc---HHHHHHHHHHH
Confidence            3344444  367777766666544 45899999988775          59999999999999974   56899999999


Q ss_pred             HhcC-----------CHHHHHHHHHHHHHhCccC
Q 022783          263 SKLN-----------QVKAGLSALEDALLAGYED  285 (292)
Q Consensus       263 akLg-----------q~eeALe~LekAIelG~~D  285 (292)
                      ..+|           ++++|+.+|++||++..++
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            9985           8999999999999998763

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.84  E-value=1.9e-09  Score=102.00  Aligned_cols=99  Identities=8%  Similarity=-0.005  Sum_probs=68.7

Q ss_pred             HHhhccccchhhHHH-HHHH--hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          185 RAERNSGVISNRVRE-IQMQ--NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       185 ~a~rN~GvI~~~l~e-iqea--~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      .+..+.|.+...++. .+++  .|.+...+.++.... +++|.++...|+|++|+..|++||+++|++   ..+|+|++.
T Consensus       132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~---~~a~~~lg~  208 (382)
T 2h6f_A          132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---YHAWQHRQW  208 (382)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC---HHHHHHHHH
Confidence            445566666666654 5554  555555555544443 477888888888888888888888888863   456888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ||..+|++++|+.++++||++..++.
T Consensus       209 ~~~~~g~~~eAl~~~~~al~l~P~~~  234 (382)
T 2h6f_A          209 VIQEFKLWDNELQYVDQLLKEDVRNN  234 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCH
Confidence            88888888888888888888776654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.84  E-value=2.4e-08  Score=71.09  Aligned_cols=68  Identities=24%  Similarity=0.322  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+++.|..++..|+|++|+..|+++++++|+.   ..+|+++|.+|..+|++++|+..+++|+++...+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~   77 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   77 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence            345689999999999999999999999999974   46799999999999999999999999999976654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.83  E-value=2.4e-08  Score=73.92  Aligned_cols=100  Identities=17%  Similarity=0.111  Sum_probs=75.1

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~-~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ..++++.|.+....++.+.+  .|.+.....+. ....+..|..++..|+|++|+..|+++++++|+.   ..+|+++|.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~   88 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---SKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---HHHHHHHHH
Confidence            34444555555444444443  34333333332 2445699999999999999999999999999974   457999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      +|..+|++++|+..+++|+++..++.
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPDNE  114 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCccch
Confidence            99999999999999999999987653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.82  E-value=2e-08  Score=76.80  Aligned_cols=69  Identities=23%  Similarity=0.288  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...+++.|..+++.|+|++|+..|++++.++|+.   ..+|+|+|.||..+|++++|+.++++|+++..++.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~   77 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   77 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence            3456799999999999999999999999999974   56899999999999999999999999999987654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.81  E-value=1.9e-08  Score=85.44  Aligned_cols=97  Identities=13%  Similarity=0.116  Sum_probs=79.8

Q ss_pred             HhhccccchhhH-----------HHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch
Q 022783          186 AERNSGVISNRV-----------REIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (292)
Q Consensus       186 a~rN~GvI~~~l-----------~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~  251 (292)
                      +.++.|.+...+           ++.+++  .|.+...+.+.. .-.+++|..+...|+|++|+..|+++++++ ++   
T Consensus        75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~---  150 (217)
T 2pl2_A           75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT---  150 (217)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC---
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc---
Confidence            456777777777           777775  666666655554 344699999999999999999999999998 52   


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          252 SVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       252 a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+|+|+|.+|..+|++++|+..+++|+++.+++.
T Consensus       151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            45799999999999999999999999999987654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.81  E-value=1e-08  Score=84.23  Aligned_cols=94  Identities=14%  Similarity=0.152  Sum_probs=71.4

Q ss_pred             hhccccchhhHHHHHHH-hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783          187 ERNSGVISNRVREIQMQ-NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL  265 (292)
                      +++.|.+....++.+++ .++++. +.....-+++.|..+++.|+|++|++.|+++++++|+.   ..+|+|+|.+|..+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAV-QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHc
Confidence            34445544444444443 222211 23344566799999999999999999999999999974   56799999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcc
Q 022783          266 NQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       266 gq~eeALe~LekAIelG~~  284 (292)
                      |++++|+.++++|+++..+
T Consensus        85 ~~~~~A~~~~~~al~~~~~  103 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRG  103 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTT
T ss_pred             ccHHHHHHHHHHHHHhCCC
Confidence            9999999999999997654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.81  E-value=1.5e-08  Score=81.76  Aligned_cols=97  Identities=16%  Similarity=0.116  Sum_probs=65.8

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      .+|.|.+....++++++  .|.+..++.+.. .-.+++|..+.+.|++++|+..+.+++..+|+.   ..++++++.++.
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~   84 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---AEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---HHHHHHHHHHHH
Confidence            45666666666666664  455544444443 334577777777888888888888887777763   456777788888


Q ss_pred             hcCCHHHHHHHHHHHHHhCccCh
Q 022783          264 KLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..++++.|+..+.+|+++...+.
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~  107 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYA  107 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhCccch
Confidence            88888888888888877766554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=3.2e-08  Score=75.73  Aligned_cols=71  Identities=28%  Similarity=0.400  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...+..|..+++.|+|++|+..|+++++++|++.+...+|+|+|.||..+|++++|+..|++++++..++.
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence            45568999999999999999999999999997544467899999999999999999999999999976653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.79  E-value=1.1e-08  Score=76.01  Aligned_cols=68  Identities=16%  Similarity=0.184  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~----a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .-.++.|..++..|+|++|+..|++++.+.|+....    ..+|+++|.+|..+|++++|+..+++++++..
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            345699999999999999999999999987753111    56899999999999999999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.79  E-value=8.3e-09  Score=87.68  Aligned_cols=94  Identities=13%  Similarity=0.005  Sum_probs=73.3

Q ss_pred             HhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcCCCCccch
Q 022783          186 AERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRT-----------GKYEVAREKFESVLGSKPTPEES  251 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~-----------gdYeeAIe~fekALeldP~~~d~  251 (292)
                      ++++.|.+...+++.+++  .|.+...+.+.. ...+++|..+.+.           |++++|+..|+++++++|++   
T Consensus        41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---  117 (217)
T 2pl2_A           41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY---  117 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc---
Confidence            344555555555555554  555555555544 3346999999999           99999999999999999974   


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          252 SVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       252 a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ..+|+|+|.+|..+|++++|+.++++|+++.
T Consensus       118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          118 APLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            4679999999999999999999999999987

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.77  E-value=2.9e-08  Score=75.15  Aligned_cols=65  Identities=18%  Similarity=0.113  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .-.+++|..++..|+|++|+..|+++++++|+.   ..+|+++|.||..+|++++|+..+++|+++..
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            445699999999999999999999999999974   56799999999999999999999999998754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.76  E-value=3.5e-08  Score=74.69  Aligned_cols=68  Identities=18%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      .++.|..+++.|+|++|++.|+++++.+|+......+++++|.||..+|++++|+..++++++...++
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            46899999999999999999999999999864444689999999999999999999999999997665

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.75  E-value=3.7e-08  Score=72.29  Aligned_cols=68  Identities=24%  Similarity=0.322  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...+..|..+++.|+|++|+..|++++..+|+.   ..+|+++|.+|..+|++++|+..+++++++..++.
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  111 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA  111 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            445699999999999999999999999999863   45799999999999999999999999999977653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.74  E-value=8.7e-09  Score=97.55  Aligned_cols=98  Identities=9%  Similarity=-0.019  Sum_probs=77.0

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhHHHH-HHHHHHHHHcCC-HHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQD-LREGLQLYRTGK-YEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~-~n~G~~L~k~gd-YeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      +.+.|.+.......+++  .|.+...+.+..... +++|.++.+.|+ |++|+..|++||+++|++   ..+|+|++.+|
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~---~~a~~~~g~~~  176 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---YQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHH
Confidence            33444444443333343  566666666655444 599999999997 999999999999999974   56899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCccChh
Q 022783          263 SKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ..+|++++|+.+|++||++..+++.
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~  201 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYH  201 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHH
Confidence            9999999999999999999887654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.73  E-value=2.1e-08  Score=89.24  Aligned_cols=95  Identities=13%  Similarity=0.075  Sum_probs=72.9

Q ss_pred             hccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          188 RNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       188 rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      ++.|.+....++.+++  .|.+.....+.. .-++++|..+++.|+|++|+..|++|++++|++   ..+|+|+|.+|..
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~   84 (281)
T 2c2l_A            8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Confidence            3344444333444443  454444444433 334699999999999999999999999999974   5689999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCccC
Q 022783          265 LNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~~D  285 (292)
                      +|++++|+..+++|+++..++
T Consensus        85 ~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           85 MESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999987654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.72  E-value=8.5e-09  Score=94.65  Aligned_cols=66  Identities=17%  Similarity=0.152  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      -++++|..++++|+|++|+..|+++|+++|++   ..+|||+|.+|..+|++++|+.+|++|+++..++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~  297 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD  297 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            34699999999999999999999999999974   5689999999999999999999999999886553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.72  E-value=7.6e-08  Score=72.03  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..++++|..+++.|+|++|+..|+++++.+|++   ..+|+++|.||..+|++++|+..+++|+++...+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~   84 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI   84 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch
Confidence            456799999999999999999999999999974   56799999999999999999999999999977653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.70  E-value=4.4e-08  Score=94.59  Aligned_cols=99  Identities=14%  Similarity=0.065  Sum_probs=81.8

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      -.++++.|.+....++.+++  .|.++..+.+.. ..+.++|..+++.|+|++|++.|++|++++|+.   ..+|+|+|.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~   82 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAA   82 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence            35567778777777777775  555555555443 445699999999999999999999999999974   568999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~D  285 (292)
                      +|..+|++++|++.+++|+++..++
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~  107 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999997664

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.70  E-value=8.7e-08  Score=69.80  Aligned_cols=68  Identities=12%  Similarity=0.060  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...+..|..++..|+|++|+..|++++..+|++   ..+|+++|.||..+|++++|+..+++++++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   72 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG   72 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence            456799999999999999999999999999974   45799999999999999999999999999976643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.69  E-value=3.3e-08  Score=82.62  Aligned_cols=64  Identities=3%  Similarity=-0.039  Sum_probs=29.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccch----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~----a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ++|..+++.|+|++|++.|+++++++|++...    ..+|+++|.++..+|++++|++.+++|+++..
T Consensus        81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  148 (228)
T 4i17_A           81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS  148 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence            44444444555555555555555444442110    12344445555555555555555555444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.69  E-value=6.4e-08  Score=81.29  Aligned_cols=100  Identities=19%  Similarity=0.154  Sum_probs=77.8

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ..++++.|.+....++.+++  .|.+.....+.. ..++++|..++..|+|++|++.|+++++++|+.   ..+|+++|.
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~  119 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGI  119 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHH
Confidence            45556666666666666665  444444443332 445699999999999999999999999999974   467999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          261 CYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       261 cyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ||..+|++++|+..+++++++..++.
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          120 ALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999987654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.68  E-value=5.1e-08  Score=70.62  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .+.+|..++..|+|++|+..|+++++++|+.   ..+|+++|.+|..+|++++|+..+++|+++...
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3588999999999999999999999999974   457999999999999999999999999999766

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.67  E-value=1.7e-07  Score=77.39  Aligned_cols=71  Identities=18%  Similarity=0.228  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch-------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-------------SVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~-------------a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ...++.|..+++.|+|++|+..|++++++.|+..+.             ..+|+|+|.||..+|++++|+.+|++|+++.
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            445699999999999999999999999998874310             2689999999999999999999999999997


Q ss_pred             ccCh
Q 022783          283 YEDF  286 (292)
Q Consensus       283 ~~Df  286 (292)
                      .++.
T Consensus       119 p~~~  122 (198)
T 2fbn_A          119 KNNV  122 (198)
T ss_dssp             TTCH
T ss_pred             cccH
Confidence            6643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.66  E-value=4.1e-08  Score=84.21  Aligned_cols=70  Identities=16%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK--------LNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak--------Lgq~eeALe~LekAIelG~~D  285 (292)
                      ...+.+|..+++.|+|++|+..|+++|.+.|+......+||++|.||..        +|++++|+..++++++...++
T Consensus        53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A           53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence            3457999999999999999999999999999766667789999999999        999999999999999987653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.63  E-value=3.9e-07  Score=75.25  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      .++.|..++..|+|++|+..|+++++++|+.   ..+|+++|.+|..+|++++|+..+++|+++..++
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  206 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF  206 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence            3477777777777777777777777777753   3467777777777777777777777777776543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.62  E-value=1e-07  Score=76.79  Aligned_cols=95  Identities=8%  Similarity=-0.011  Sum_probs=71.8

Q ss_pred             hccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHH-HHHcCCH--HHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          188 RNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQ-LYRTGKY--EVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       188 rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~-L~k~gdY--eeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      ++.|.+....++..++  .|.+...+.+.. .-.++.|.. ++..|+|  ++|+..|+++++++|++   ..+|+++|.+
T Consensus        48 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~  124 (177)
T 2e2e_A           48 ALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE---ITALMLLASD  124 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---HHHHHHHHHH
Confidence            3444444444444443  444444443333 345699999 7799999  99999999999999974   4679999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCccC
Q 022783          262 YSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~~D  285 (292)
                      |..+|++++|+..+++|+++..++
T Consensus       125 ~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          125 AFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999998765

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.61  E-value=1.2e-07  Score=71.82  Aligned_cols=81  Identities=20%  Similarity=0.418  Sum_probs=61.5

Q ss_pred             cceEEEEecC----CceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           84 YEEYEVEIEQ----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        84 ~~~~~v~l~K----PlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      ++.++|+|.|    ++|+.+..+. +.+++|..|.|+|.|+++|.+++||+|+++...   .+ ......++...++...
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v-~~~~~~~~~~~~~~~~   78 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGE---DV-RNATQEAVAALLKCSL   78 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHCC
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCC
Confidence            4678899987    4899997764 459999999999999999999999999997642   11 1112345666777666


Q ss_pred             CceEEEEeec
Q 022783          159 GPLLMKMQKR  168 (292)
Q Consensus       159 g~v~l~l~r~  168 (292)
                      +++.|++.|+
T Consensus        79 ~~v~l~v~R~   88 (92)
T 2qg1_A           79 GTVTLEVGRI   88 (92)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEcc
Confidence            7899999885

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.61  E-value=1.2e-07  Score=78.26  Aligned_cols=95  Identities=12%  Similarity=0.054  Sum_probs=73.9

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      .+..+.|.+....++.+++  .|.+.....+.. .-.++.|..+++.|+|++|+..|+++++++|+.   ..+|+++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~  216 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATA  216 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH---HHHHHHHHHH
Confidence            3444555555555555554  444444443333 345699999999999999999999999999974   5679999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhC
Q 022783          262 YSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG  282 (292)
                      |..+|++++|+..+++|+++.
T Consensus       217 ~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          217 QIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999999997

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.60  E-value=3e-07  Score=67.87  Aligned_cols=68  Identities=22%  Similarity=0.233  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...+..|..++..|+|++|+..|++++..+|+.   ..+|+++|.||..+|++++|+..+++++++..++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   80 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS   80 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence            445699999999999999999999999999973   56799999999999999999999999999976653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.60  E-value=2.2e-07  Score=68.88  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..++..|..++..|+|++|+..|++++..+|+.   ..+|+++|.+|..+|++++|+..+++++++..+
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   70 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence            445689999999999999999999999999973   567999999999999999999999999998654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.60  E-value=1.4e-07  Score=86.28  Aligned_cols=71  Identities=18%  Similarity=0.250  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------SSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d------------~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ..++++|+.+++.|+|++|+..|++||+++|+..+            ...+|+|+|.||.++|++++|+.+|++||++..
T Consensus       148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  227 (336)
T 1p5q_A          148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS  227 (336)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            44569999999999999999999999999997420            146899999999999999999999999999987


Q ss_pred             cCh
Q 022783          284 EDF  286 (292)
Q Consensus       284 ~Df  286 (292)
                      ++.
T Consensus       228 ~~~  230 (336)
T 1p5q_A          228 NNE  230 (336)
T ss_dssp             TCH
T ss_pred             CcH
Confidence            654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.59  E-value=2.9e-07  Score=71.67  Aligned_cols=69  Identities=13%  Similarity=0.141  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...++++|..++..|+|++|+..|+++++++|++   ..+|+++|.||..+|++++|+..+++|+++...+.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~   81 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI   81 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence            3456799999999999999999999999999974   56799999999999999999999999999976643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.58  E-value=4e-07  Score=76.41  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..++.+|..++..|+|++|+..|+++++++|+.   ..+|+++|.+|..+|++++|+..+++|+++...+.
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  111 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  111 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence            445699999999999999999999999999974   56799999999999999999999999999976543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.58  E-value=1.3e-07  Score=90.40  Aligned_cols=71  Identities=20%  Similarity=0.224  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------SSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d------------~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ..++++|+.+++.|+|++|+..|++||+++|+...            ...+|+|+|.||.++|++++|+.+|++||++..
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  348 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS  348 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            44569999999999999999999999999997420            146899999999999999999999999999987


Q ss_pred             cCh
Q 022783          284 EDF  286 (292)
Q Consensus       284 ~Df  286 (292)
                      ++.
T Consensus       349 ~~~  351 (457)
T 1kt0_A          349 ANE  351 (457)
T ss_dssp             TCH
T ss_pred             ccH
Confidence            654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.58  E-value=2.4e-07  Score=79.31  Aligned_cols=70  Identities=21%  Similarity=0.265  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ....+++|..+++.|+|++|+..|+++++.+|+......+||++|.||..+|++++|+..+++++++..+
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~   84 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI   84 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence            3566899999999999999999999999999986555678999999999999999999999999999654

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.58  E-value=2.2e-07  Score=70.99  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=61.8

Q ss_pred             cceEEEEecCC-----ceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           84 YEEYEVEIEQP-----YGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        84 ~~~~~v~l~KP-----lGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      ++.++|+|.|+     +|+.+.... +.+++|..|.|+|.|+++|.|++||+|+.+...   .+ .....-.+...++..
T Consensus         2 ~~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v-~~~~~~~~~~~~~~~   77 (95)
T 2vwr_A            2 MEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGH---DL-KYGTPELAAQIIQAS   77 (95)
T ss_dssp             EEEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHC
T ss_pred             cEEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcC
Confidence            36788999873     899997664 459999999999999999999999999997631   11 111234555666655


Q ss_pred             CCceEEEEeecc
Q 022783          158 VGPLLMKMQKRY  169 (292)
Q Consensus       158 ~g~v~l~l~r~~  169 (292)
                      ..++.|.+.|.-
T Consensus        78 g~~v~l~v~R~~   89 (95)
T 2vwr_A           78 GERVNLTIARPG   89 (95)
T ss_dssp             CSEEEEEEEEES
T ss_pred             CCEEEEEEEcCC
Confidence            678899998853

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.58  E-value=1.3e-07  Score=83.77  Aligned_cols=100  Identities=12%  Similarity=0.030  Sum_probs=72.4

Q ss_pred             HHhhccccchhhH-HHHHHH--hhHHHHHhhHhH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch---
Q 022783          185 RAERNSGVISNRV-REIQMQ--NYMKKKEQKERR-------EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES---  251 (292)
Q Consensus       185 ~a~rN~GvI~~~l-~eiqea--~Y~kkk~lk~~~-------~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~---  251 (292)
                      .++.|.|.+.... .+..++  .|.++..+.+..       .-..+.|..+.+.|+|++|+..|+++++++|++...   
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  197 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence            4556667666653 555554  555555443321       224588999999999999999999999999875332   


Q ss_pred             -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          252 -SVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       252 -a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                       ..+|+|++.||..+|++++|+.+|++|+++...
T Consensus       198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  231 (292)
T 1qqe_A          198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN  231 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence             236899999999999999999999999877543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.57  E-value=1.7e-07  Score=79.04  Aligned_cols=69  Identities=13%  Similarity=0.123  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHH----------------HHHHHHhcCCHHHHHHHHHHHH
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN----------------VACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN----------------~AccyakLgq~eeALe~LekAI  279 (292)
                      ...+.+|..+++.|+|++|+..|+++++++|++   ..+|++                +|.||..+|++++|+.++++|+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR---TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH---HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            456799999999999999999999999999963   456888                9999999999999999999999


Q ss_pred             HhCccChh
Q 022783          280 LAGYEDFK  287 (292)
Q Consensus       280 elG~~Df~  287 (292)
                      ++.+++..
T Consensus        82 ~~~p~~~~   89 (208)
T 3urz_A           82 QKAPNNVD   89 (208)
T ss_dssp             HHCTTCHH
T ss_pred             HHCCCCHH
Confidence            99887654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.57  E-value=9e-08  Score=84.90  Aligned_cols=95  Identities=18%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      +.+.|.+...+++..++  .|.+.....+.. ..+.++|..+.+.|+|++|+..|+++++++|+.   ..+|+|+|.+|.
T Consensus       216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~  292 (365)
T 4eqf_A          216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF---IRSRYNLGISCI  292 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHH
Confidence            44555555555555554  444444433332 344588888888999999999999999888863   557889999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCcc
Q 022783          264 KLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~  284 (292)
                      .+|++++|+..+++|+++..+
T Consensus       293 ~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          293 NLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.57  E-value=1.2e-07  Score=83.92  Aligned_cols=102  Identities=8%  Similarity=-0.113  Sum_probs=77.9

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHh-------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCccc---
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKER-------REQDLREGLQLYRT-GKYEVAREKFESVLGSKPTPEE---  250 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~-------~~~~~n~G~~L~k~-gdYeeAIe~fekALeldP~~~d---  250 (292)
                      ..++.|.|.+...+.+.+++  .|.++..+...       .....+.|..+... |+|++|+.+|++||++.|+..+   
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~  156 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence            45667777777777666665  45555444332       12345999999996 9999999999999998875322   


Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          251 SSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       251 ~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ...+|+|+|.+|..+|++++|+..+++|+++..++
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            24579999999999999999999999999987553

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.57  E-value=2.5e-07  Score=82.00  Aligned_cols=92  Identities=12%  Similarity=0.117  Sum_probs=71.2

Q ss_pred             ccchhhHHHHHHH--hhHHHHHhhHh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783          191 GVISNRVREIQMQ--NYMKKKEQKER---REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (292)
Q Consensus       191 GvI~~~l~eiqea--~Y~kkk~lk~~---~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL  265 (292)
                      |.+...+++..++  .|.+.....+.   ....+++|..+.+.|+|++|++.|+++++++|+.   ..+|+|+|.+|..+
T Consensus       184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~  260 (365)
T 4eqf_A          184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANG  260 (365)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc
Confidence            5555556666664  44444444433   3445699999999999999999999999999974   56899999999999


Q ss_pred             CCHHHHHHHHHHHHHhCccC
Q 022783          266 NQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       266 gq~eeALe~LekAIelG~~D  285 (292)
                      |++++|+..+++|+++..++
T Consensus       261 g~~~~A~~~~~~al~~~p~~  280 (365)
T 4eqf_A          261 DRSEEAVEAYTRALEIQPGF  280 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC
T ss_pred             CCHHHHHHHHHHHHhcCCCc
Confidence            99999999999999997664

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.55  E-value=1.1e-07  Score=91.08  Aligned_cols=102  Identities=8%  Similarity=-0.080  Sum_probs=81.2

Q ss_pred             HHhhccccchhhH---------HHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHc--------CCHHHHHHHHHHHHcC
Q 022783          185 RAERNSGVISNRV---------REIQMQ--NYMKKKEQKERR-EQDLREGLQLYRT--------GKYEVAREKFESVLGS  244 (292)
Q Consensus       185 ~a~rN~GvI~~~l---------~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~--------gdYeeAIe~fekALel  244 (292)
                      .++.+.|.+...+         ++.+++  .|.+...+.+.. ..++++|..+...        |+|++|+..|++|+++
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            4556677777766         777775  565555555543 4456999999999        9999999999999999


Q ss_pred             CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          245 KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       245 dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      +|...+...+|+|+|.||..+|++++|++++++|+++..++.
T Consensus       251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            992212356899999999999999999999999999987654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.55  E-value=2.1e-07  Score=71.77  Aligned_cols=71  Identities=13%  Similarity=0.052  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC----ccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPT----PEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~----~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ..+++..|..+++.++|+.|+.+|++|+...+.    ......+++++|.||.++|++++|+..+++|+++.+++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            457899999999999999999999999964311    11345689999999999999999999999999998775

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.54  E-value=2.5e-07  Score=78.55  Aligned_cols=70  Identities=13%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ...+++|..+++.|+|++|+..|+++++..|+......+++++|.||..+|++++|+..+++++++..++
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            4567999999999999999999999999999764455689999999999999999999999999997665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.54  E-value=3.6e-07  Score=67.16  Aligned_cols=63  Identities=24%  Similarity=0.328  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .+..|..++..|+|++|+..|++++...|+.   ..+|+++|.+|..+|++++|+..++++++...
T Consensus        72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            3466777777777777777777777766652   34577777777777777777777777776643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.54  E-value=2.4e-07  Score=72.22  Aligned_cols=66  Identities=20%  Similarity=0.345  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      -.+..|..+++.|+|++|++.|+++++.+|+.   ..+|+++|.+|..+|++++|+..+++++++..++
T Consensus       112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            34577888888888888888888888887753   4568888888888888888888888888776543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.53  E-value=1.3e-07  Score=83.21  Aligned_cols=97  Identities=12%  Similarity=0.083  Sum_probs=68.7

Q ss_pred             HHhhccccchhhHHHHHHH-hhHHHHHh------hHhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc---ch
Q 022783          185 RAERNSGVISNRVREIQMQ-NYMKKKEQ------KERR---EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ES  251 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea-~Y~kkk~l------k~~~---~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~---d~  251 (292)
                      .++.|.|.+...+.+.+++ .|+++...      ....   .-.++.|..+++.|+|++|++.|++||++.++..   ..
T Consensus       156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~  235 (293)
T 3u3w_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            3556666666665555554 33322221      1111   2335999999999999999999999997765431   23


Q ss_pred             hHHHHHHHHHHHhcCC-HHHHHHHHHHHHHh
Q 022783          252 SVASYNVACCYSKLNQ-VKAGLSALEDALLA  281 (292)
Q Consensus       252 a~a~YN~AccyakLgq-~eeALe~LekAIel  281 (292)
                      +.+|+|+|.||.++|+ +++|++.+++|+++
T Consensus       236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            6789999999999995 69999999999876

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.53  E-value=4e-07  Score=66.96  Aligned_cols=68  Identities=24%  Similarity=0.314  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...+..|..+...|++++|+..|++++..+|+.   ..+|+++|.+|..+|++++|+..++++++....+.
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            345688999999999999999999999999863   45799999999999999999999999999876643

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.52  E-value=3.6e-07  Score=70.43  Aligned_cols=84  Identities=14%  Similarity=0.259  Sum_probs=62.8

Q ss_pred             ccccceEEEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           81 EEKYEEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        81 ~~~~~~~~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +..++.++|+|.|    .||+.+.. .+.+++|..|.|+|.|+++|.|++||+|+++..   ..+-. ...-.+...++.
T Consensus         4 ~~~~~~~~v~l~~~~~~glG~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing---~~v~~-~~~~~~~~~~~~   78 (96)
T 2qkv_A            4 RNSLEKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNG---DALEG-LPFQVSYALFKG   78 (96)
T ss_dssp             CCCCCCEEEEEECBTTBCCCEEEEE-CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETT---EECTT-CCHHHHHHHHHT
T ss_pred             hHHCceEEEEEEeCCCCCccEEEEe-CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECC---EECCC-CCHHHHHHHHhc
Confidence            3456778999964    68888776 456899999999999999999999999999763   22211 113345566776


Q ss_pred             cCCceEEEEeecc
Q 022783          157 RVGPLLMKMQKRY  169 (292)
Q Consensus       157 r~g~v~l~l~r~~  169 (292)
                      ..+++.|++.|+.
T Consensus        79 ~~~~v~l~v~R~~   91 (96)
T 2qkv_A           79 ANGKVSMEVTRPK   91 (96)
T ss_dssp             CSSEEEEEEECCC
T ss_pred             CCCcEEEEEEeCC
Confidence            6788999999863

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.52  E-value=3.5e-07  Score=70.17  Aligned_cols=81  Identities=21%  Similarity=0.458  Sum_probs=62.3

Q ss_pred             ceEEEEecC---CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g  159 (292)
                      +.++|+|.|   ++|+.+....+  ++++|..|.|++.|+++|.|++||+|+++-.   ..+- ...+.++...|+....
T Consensus         5 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng---~~v~-~~~~~~~~~~l~~~g~   80 (97)
T 1n7e_A            5 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINS---SSLK-GKPLSEAIHLLQMAGE   80 (97)
T ss_dssp             CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETT---EECT-TCCHHHHHHHHHTCCS
T ss_pred             eEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EECC-CCCHHHHHHHHHcCCC
Confidence            678999987   78899977654  6999999999999999999999999999763   2221 1124566677775456


Q ss_pred             ceEEEEeecc
Q 022783          160 PLLMKMQKRY  169 (292)
Q Consensus       160 ~v~l~l~r~~  169 (292)
                      ++.|.+.|.-
T Consensus        81 ~v~l~v~R~~   90 (97)
T 1n7e_A           81 TVTLKIKKQT   90 (97)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEeCC
Confidence            7889998853

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.52  E-value=2.4e-07  Score=82.36  Aligned_cols=69  Identities=25%  Similarity=0.306  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ...+++|+.+++.|+|++|+..|+++|+++|++   ..+|+|+|.||..+|++++|+.++++|+++..++..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~   73 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK   73 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence            345699999999999999999999999999974   568999999999999999999999999999876543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.52  E-value=2.2e-07  Score=89.49  Aligned_cols=96  Identities=10%  Similarity=-0.035  Sum_probs=57.7

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      +++.|.+....++.+++  .|.+...+.+.. .-.+++|..+.+.|+|++|++.|+++++++|++   ..+|+|+|.||.
T Consensus        26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~  102 (568)
T 2vsy_A           26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---PGIALWLGHALE  102 (568)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHH
Confidence            34444444444444443  333333333332 233477777777777777777777777777753   345777777777


Q ss_pred             hcCCHHHHHHHHHHHHHhCccC
Q 022783          264 KLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~D  285 (292)
                      .+|++++|++.+++|+++..++
T Consensus       103 ~~g~~~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A          103 DAGQAEAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Confidence            7777777777777777766543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.52  E-value=1e-07  Score=83.85  Aligned_cols=98  Identities=14%  Similarity=0.121  Sum_probs=69.2

Q ss_pred             HHHhhccccchhhHHHHHHH-hhH-HHHHh-hH---h---H-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc---c
Q 022783          184 IRAERNSGVISNRVREIQMQ-NYM-KKKEQ-KE---R---R-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---E  250 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea-~Y~-kkk~l-k~---~---~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~---d  250 (292)
                      ..++.|.|.+...+++.+++ .|+ ++... +.   .   . .-.++.|..+++.|+|++|++.|++||++.++..   .
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            45666777777776666665 333 33211 10   0   1 2345999999999999999999999997654311   2


Q ss_pred             hhHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 022783          251 SSVASYNVACCYSKLNQVKAG-LSALEDALLA  281 (292)
Q Consensus       251 ~a~a~YN~AccyakLgq~eeA-Le~LekAIel  281 (292)
                      .+.+|+|+|.||..+|++++| ...+++|+++
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            367899999999999999999 7779999766

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.52  E-value=5.4e-07  Score=68.34  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ...+.|..++..|+|++|++.|++++++.+..   .....+++|+|.+|..+|++++|+..+++|+++
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34588888899999999999999988654432   223567889999999999999999999988876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.51  E-value=3.3e-07  Score=83.69  Aligned_cols=100  Identities=18%  Similarity=0.025  Sum_probs=75.8

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      .++++.|...-..++..++  .|.+.....+....++++|..+++.|+|++|+..|+++++++|++   ..+|+++|.||
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~   83 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY---SKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH---HHHHHHHHHHH
Confidence            3444444444444444443  444444444444556799999999999999999999999999974   46799999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCccChh
Q 022783          263 SKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ..+|++++|+..++++++++..+..
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccc
Confidence            9999999999999999999865433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.50  E-value=2.1e-07  Score=81.72  Aligned_cols=95  Identities=16%  Similarity=0.121  Sum_probs=62.6

Q ss_pred             hccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          188 RNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       188 rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      .+.|.+....++.+++  .|.+.....+.. ....++|..+.+.|+|++|+..|+++++++|+.   ..+|+++|.+|..
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~  297 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---IRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHH
Confidence            3344444444444443  333333333332 334578888888888888888888888888753   4568888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCccC
Q 022783          265 LNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~~D  285 (292)
                      +|++++|+..+++|+++..++
T Consensus       298 ~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          298 LGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhCCCC
Confidence            888888888888888776544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.50  E-value=7e-07  Score=75.75  Aligned_cols=69  Identities=9%  Similarity=0.069  Sum_probs=62.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      +..|..+++.|+|++|+..|+++|+..|+......+++++|.||.++|++++|++.+++++..+.++-+
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence            588999999999999999999999999986555678999999999999999999999999998877544

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.50  E-value=3.1e-07  Score=72.19  Aligned_cols=78  Identities=18%  Similarity=0.354  Sum_probs=60.0

Q ss_pred             EEEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      ..|+|.|    +||+.+....+++++|..|.|++.|+++|.|++||+|+.+..   ..+. ...+.++...|+...+++.
T Consensus        14 ~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING---~~v~-~~~~~~~~~~l~~~~~~v~   89 (97)
T 2ejy_A           14 RLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEING---TNVT-NHSVDQLQKAMKETKGMIS   89 (97)
T ss_dssp             EEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETT---BCCC-SSCSHHHHHHHHHCCEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECC---EECC-CCCHHHHHHHHHcCCCeEE
Confidence            3566655    899999877778999999999999999999999999999863   2221 1135566777776677888


Q ss_pred             EEEeec
Q 022783          163 MKMQKR  168 (292)
Q Consensus       163 l~l~r~  168 (292)
                      |++.+.
T Consensus        90 L~V~~~   95 (97)
T 2ejy_A           90 LKVIPN   95 (97)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            888764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.49  E-value=2.9e-07  Score=77.62  Aligned_cols=96  Identities=15%  Similarity=0.172  Sum_probs=64.2

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHH-HHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA-CCY  262 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~A-ccy  262 (292)
                      +.+.|.+...+++.+++  .|.+.....+.. ....+.|..++..|+|++|++.|+++++++|+.   ..+|+|+| ++|
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~  153 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD---PKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc---HHHHHHHHHHHH
Confidence            34444444444444444  333333333332 344588888888888888888888888888863   45688888 666


Q ss_pred             HhcCCHHHHHHHHHHHHHhCccCh
Q 022783          263 SKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~~Df  286 (292)
                      ... ++++|+..+++|+++..++.
T Consensus       154 ~~~-~~~~A~~~~~~a~~~~p~~~  176 (272)
T 3u4t_A          154 YNK-EYVKADSSFVKVLELKPNIY  176 (272)
T ss_dssp             HTT-CHHHHHHHHHHHHHHSTTCH
T ss_pred             HHH-HHHHHHHHHHHHHHhCccch
Confidence            664 88888888888888876643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.49  E-value=5.6e-07  Score=74.87  Aligned_cols=66  Identities=14%  Similarity=0.023  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeld-----P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ....++|..+...|+|++|++.|++++.+.     |+.+....+|+|+|.+|..+|++++|+..+++|+++
T Consensus        86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344699999999999999999999999872     333355678999999999999999999999999988

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.49  E-value=5e-07  Score=70.42  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      .-.+..|..++..|+|++|++.|++++..+|+.   ..+|+++|.+|..+|++++|+..++++++...++
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            345689999999999999999999999999863   4679999999999999999999999999987654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.49  E-value=6e-07  Score=72.59  Aligned_cols=64  Identities=22%  Similarity=0.211  Sum_probs=32.5

Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          219 LREGLQLYRT-GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       219 ~n~G~~L~k~-gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      +..|..++.. |+|++|+..|+++++ .|..+....+|+++|.+|..+|++++|+..++++++...
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  144 (225)
T 2vq2_A           80 NNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP  144 (225)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3555555555 555555555555555 222112234455555555555555555555555555543

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.48  E-value=1.1e-06  Score=68.25  Aligned_cols=79  Identities=20%  Similarity=0.382  Sum_probs=59.0

Q ss_pred             EEEEecC----CceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc--
Q 022783           87 YEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--  156 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~G----~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~--  156 (292)
                      .+|++.|    +||+.+.....|    +++|..|.+++.|+++|.|++||+|+++.   |..+ ....+.++...|+.  
T Consensus        11 ~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~In---g~~v-~~~~~~~~~~~l~~~~   86 (101)
T 2yt7_A           11 REVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAIN---GTSL-VGLPLAACQAAVRETK   86 (101)
T ss_dssp             EEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEES---SCBC-TTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEEC-CCCCHHHHHHHHHhCC
Confidence            4455543    799999865545    79999999999999977799999999976   3333 11345567778876  


Q ss_pred             cCCceEEEEeecc
Q 022783          157 RVGPLLMKMQKRY  169 (292)
Q Consensus       157 r~g~v~l~l~r~~  169 (292)
                      ...+|.|++.|..
T Consensus        87 ~g~~v~l~v~R~~   99 (101)
T 2yt7_A           87 SQTSVTLSIVHCP   99 (101)
T ss_dssp             TSSEEEEEECCCC
T ss_pred             CCCeEEEEEEeCC
Confidence            4567899998865

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.48  E-value=5.6e-07  Score=74.86  Aligned_cols=98  Identities=16%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHh---------hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCC
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQ---------KERREQDLREGLQLYRTGKYEVAREKFESVLGS-----KPT  247 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~l---------k~~~~~~~n~G~~L~k~gdYeeAIe~fekALel-----dP~  247 (292)
                      ..++.+.|.+...+.+.+++  .|.+....         ........++|..++..|+|++|+..|++++++     .++
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  164 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD  164 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            44556666666666666664  33333333         112234469999999999999999999999987     222


Q ss_pred             ccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          248 PEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       248 ~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+....+++|+|.+|..+|++++|+..+++++++
T Consensus       165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2245678999999999999999999999999987

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.48  E-value=7.4e-07  Score=67.57  Aligned_cols=97  Identities=16%  Similarity=0.080  Sum_probs=70.0

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---ccchh
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESS  252 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~-------~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~---~~d~a  252 (292)
                      .++.+.|.+...+.+..++  .|.+.......       .....+.|..++..|+|++|++.|++++++.+.   .....
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            4555566665555555554  33333222221       233469999999999999999999999965332   22346


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          253 VASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       253 ~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+++++|.+|..+|++++|++.+++|+++
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            78999999999999999999999999987

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.47  E-value=4.9e-07  Score=69.09  Aligned_cols=80  Identities=20%  Similarity=0.373  Sum_probs=63.5

Q ss_pred             ceEEEEecC---CceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHH
Q 022783           85 EEYEVEIEQ---PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYT  153 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~a  153 (292)
                      +.++|+|.|   ++|+.+..+.      +.+++|..|.|++.|+++|.|++||+|+++..   .   +...  +.++..+
T Consensus         3 ~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing---~---~v~~~~~~~~~~~   76 (97)
T 2jil_A            3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG---I---RLLGTTHAEAMSI   76 (97)
T ss_dssp             EEEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETT---E---ECSSCCHHHHHHH
T ss_pred             eEEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---E---ECCCCCHHHHHHH
Confidence            467888887   6899998764      35999999999999999999999999999763   1   2223  5667778


Q ss_pred             hhccCCceEEEEeeccC
Q 022783          154 IRQRVGPLLMKMQKRYG  170 (292)
Q Consensus       154 i~~r~g~v~l~l~r~~~  170 (292)
                      |+....++.|.+.|...
T Consensus        77 l~~~g~~v~l~v~R~~~   93 (97)
T 2jil_A           77 LKQCGQEAALLIEYDVS   93 (97)
T ss_dssp             HHHSCSEEEEEEEEECC
T ss_pred             HHcCCCeEEEEEEeCCC
Confidence            87766678999999654

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.46  E-value=1.1e-06  Score=68.54  Aligned_cols=83  Identities=22%  Similarity=0.443  Sum_probs=64.9

Q ss_pred             ccceEEEEec---CCceeEEeeeC--------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHH
Q 022783           83 KYEEYEVEIE---QPYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (292)
Q Consensus        83 ~~~~~~v~l~---KPlGl~~~~~~--------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~  151 (292)
                      ..+.++|+|.   +++|+.+..+.        +.+++|..|.+++.|+++|.|++||+|+++..   ..+ ....+.++.
T Consensus         5 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng---~~v-~~~~~~~~~   80 (105)
T 1wha_A            5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSING---VDV-TEARHDHAV   80 (105)
T ss_dssp             CCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESS---CBC-TTCCHHHHH
T ss_pred             CCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHH
Confidence            4577888885   56899998754        35999999999999999999999999999763   111 112256777


Q ss_pred             HHhhccCCceEEEEeecc
Q 022783          152 YTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       152 ~ai~~r~g~v~l~l~r~~  169 (292)
                      ..|+.....+.|++.|..
T Consensus        81 ~~l~~~g~~v~l~v~R~~   98 (105)
T 1wha_A           81 SLLTAASPTIALLLEREA   98 (105)
T ss_dssp             HHHTSCCSCEEEEEEECC
T ss_pred             HHHHcCCCeEEEEEEECC
Confidence            888876778999999975

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.45  E-value=2.8e-07  Score=79.06  Aligned_cols=67  Identities=9%  Similarity=0.120  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCccC
Q 022783          214 RREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       214 ~~~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq~eeALe~LekAIelG~~D  285 (292)
                      .....+++|..+..    .++|++|+++|+++++.+|     ..+++|+|.+|..    .+++++|++.+++|+++|+++
T Consensus       181 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          181 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            34556788888888    8888899988888888876     3468888999888    888999999999998888764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.45  E-value=1.1e-06  Score=64.29  Aligned_cols=68  Identities=24%  Similarity=0.322  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..++..|..++..|+|++|++.|++++..+|+.   ..+|+++|.+|..+|++++|+..++++++...++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~   77 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   77 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence            345689999999999999999999999999863   45799999999999999999999999999876543

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.45  E-value=6.6e-07  Score=67.78  Aligned_cols=81  Identities=19%  Similarity=0.438  Sum_probs=61.7

Q ss_pred             cceEEEEecCC---ceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           84 YEEYEVEIEQP---YGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        84 ~~~~~v~l~KP---lGl~~~~~~------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      .+.++|+|.|+   ||+.+....      +++++|..|.+++.|+++|.|++||+|+++...   .+ ....+.++...+
T Consensus         3 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~---~v-~~~~~~~~~~~~   78 (97)
T 2iwn_A            3 SETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGT---NL-QGFTNQQAVEVL   78 (97)
T ss_dssp             EEEEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTE---EC-TTSCHHHHHHHH
T ss_pred             cEEEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHH
Confidence            46788999887   999998762      469999999999999999989999999998742   11 111234556677


Q ss_pred             hccCCceEEEEeec
Q 022783          155 RQRVGPLLMKMQKR  168 (292)
Q Consensus       155 ~~r~g~v~l~l~r~  168 (292)
                      +....++.|++.|.
T Consensus        79 ~~~~~~v~l~v~r~   92 (97)
T 2iwn_A           79 RHTGQTVLLTLMRR   92 (97)
T ss_dssp             HTCCSEEEEEEEEE
T ss_pred             HcCCCeEEEEEEeC
Confidence            76566789998874

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.45  E-value=9.2e-07  Score=69.96  Aligned_cols=80  Identities=15%  Similarity=0.258  Sum_probs=60.9

Q ss_pred             ceEEEEec----CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        85 ~~~~v~l~----KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      +.++|+|.    ..+|+.+.. .+.+++|..|.|+|.|+++|.|++||+|+++..   ..+-.. ..-.+...++...++
T Consensus         2 ~~~~v~L~k~~~~glG~~i~~-~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing---~~v~~~-~~~~~~~~~~~~~~~   76 (106)
T 2la8_A            2 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNG---DALEGL-PFQVCYALFKGANGK   76 (106)
T ss_dssp             EEEEEEECCBSSSTTCCEEEE-CSSSEEEEECCTTSCHHHHTTCCTTCEEEEESS---CBCSSS-CHHHHHHHHHSCBSC
T ss_pred             eEEEEEEEeCCCCccCEEEEe-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EECCCC-CHHHHHHHHhCCCCe
Confidence            56788887    468888876 456899999999999999999999999998763   222111 233455677777788


Q ss_pred             eEEEEeecc
Q 022783          161 LLMKMQKRY  169 (292)
Q Consensus       161 v~l~l~r~~  169 (292)
                      |.|.+.|+.
T Consensus        77 v~l~v~R~~   85 (106)
T 2la8_A           77 VSMEVTRPK   85 (106)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEeCC
Confidence            999999963

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.45  E-value=9.8e-07  Score=67.52  Aligned_cols=84  Identities=23%  Similarity=0.381  Sum_probs=63.2

Q ss_pred             ceEEEEecC---CceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      ++++|+|.|   ++|+.+..+.+   ++++|..|.+++.|+++|.|++||+|+++...   .+ ....+.+++..++...
T Consensus         4 ~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v-~~~~~~~~~~~~~~~~   79 (98)
T 2opg_A            4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGI---DL-RKATHDEAINVLRQTP   79 (98)
T ss_dssp             EEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHTCC
T ss_pred             CEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCC
Confidence            457777765   68999987765   79999999999999999999999999997631   11 1112446667777666


Q ss_pred             CceEEEEeeccCCc
Q 022783          159 GPLLMKMQKRYGKM  172 (292)
Q Consensus       159 g~v~l~l~r~~~~~  172 (292)
                      .++.|++.|.-...
T Consensus        80 ~~v~l~v~R~~~~~   93 (98)
T 2opg_A           80 QRVRLTLYRDEAPY   93 (98)
T ss_dssp             SEEEEEEEECSSCC
T ss_pred             CeEEEEEEcCCCCC
Confidence            88999998865443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.45  E-value=9.1e-07  Score=76.19  Aligned_cols=66  Identities=18%  Similarity=0.013  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      .+.+|..+.+.|+|++|+..|+++++++|+.   ..+|+++|.+|..+|++++|+..+++|+++..++.
T Consensus       275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~  340 (359)
T 3ieg_A          275 KERICHCFSKDEKPVEAIRICSEVLQMEPDN---VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ  340 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            3478999999999999999999999999974   56799999999999999999999999999987643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.44  E-value=1.3e-06  Score=76.61  Aligned_cols=94  Identities=14%  Similarity=0.130  Sum_probs=73.2

Q ss_pred             ccccchhhHHHHHHH--hhHHHHHhhHh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          189 NSGVISNRVREIQMQ--NYMKKKEQKER---REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       189 N~GvI~~~l~eiqea--~Y~kkk~lk~~---~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      +.|.+. ..+..+++  .|.+.....+.   ....+++|..+.+.|+|++|+..|+++++++|+.   ..+|+++|.+|.
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~  262 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLA  262 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHH
Confidence            344444 44555554  44444444444   2445699999999999999999999999999974   467999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCccCh
Q 022783          264 KLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~Df  286 (292)
                      .+|++++|+..+++|+++..++.
T Consensus       263 ~~g~~~~A~~~~~~al~~~~~~~  285 (368)
T 1fch_A          263 NGNQSEEAVAAYRRALELQPGYI  285 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcH
Confidence            99999999999999999976543

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.44  E-value=1.7e-06  Score=70.38  Aligned_cols=84  Identities=15%  Similarity=0.273  Sum_probs=64.3

Q ss_pred             cccceEEEEecC---CceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783           82 EKYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (292)
Q Consensus        82 ~~~~~~~v~l~K---PlGl~~~~~~~-----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a  153 (292)
                      ...+.++|+|.|   +||+.+..+.+     .++||..|.+++.|+++|.|++||+|+.+-..   .+- ...+.++...
T Consensus        26 ~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~---~v~-~~~~~~~~~~  101 (130)
T 1i16_A           26 AEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT---AMQ-GLTRFEAWNI  101 (130)
T ss_dssp             SSEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSC---BGG-GSCHHHHHHH
T ss_pred             CCCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHHH
Confidence            345667888877   89999987655     48999999999999999669999999998632   221 1135677888


Q ss_pred             hhccCC-ceEEEEeecc
Q 022783          154 IRQRVG-PLLMKMQKRY  169 (292)
Q Consensus       154 i~~r~g-~v~l~l~r~~  169 (292)
                      |+...+ +|.|+++|.-
T Consensus       102 l~~~~~~~v~l~v~r~~  118 (130)
T 1i16_A          102 IKALPDGPVTIVIRRKS  118 (130)
T ss_dssp             HHTSCSSEEEEEEEEES
T ss_pred             HHhCCCceEEEEEEeCC
Confidence            887654 5999999873

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.44  E-value=2.7e-07  Score=79.10  Aligned_cols=68  Identities=15%  Similarity=0.051  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+++.|..+.+.|+|++|+..|+++++++|+.   ..+|+++|.||..+|++++|++.+++|+++..++.
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN---ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc---hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence            455699999999999999999999999999973   45799999999999999999999999999987654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.44  E-value=6.7e-07  Score=81.68  Aligned_cols=69  Identities=22%  Similarity=0.224  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       214 ~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ....++.+|..+++.|+|++|+..|++++..+|+    ..+|+++|.||..+|++++|+.+|++|+++..++.
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~   73 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS   73 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH
Confidence            3456779999999999999999999999999995    46899999999999999999999999999987754

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.43  E-value=3e-07  Score=84.92  Aligned_cols=95  Identities=18%  Similarity=0.053  Sum_probs=58.9

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      .++++.|...-..+++.++  .|.+.....+.. .-++++|..+++.|+|++|+..|+++++++|++   ..+|+++|.|
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~  102 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH---SKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch---HHHHHHHHHH
Confidence            4445555544444444443  444444433333 334578888888888888888888888887763   4567888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCc
Q 022783          262 YSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~  283 (292)
                      |..+|++++|+..++ ++.+..
T Consensus       103 ~~~~g~~~~A~~~~~-~~~~~~  123 (537)
T 3fp2_A          103 NESLGNFTDAMFDLS-VLSLNG  123 (537)
T ss_dssp             HHHHTCHHHHHHHHH-HHC---
T ss_pred             HHHcCCHHHHHHHHH-HHhcCC
Confidence            888888888888884 665543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.43  E-value=7.8e-07  Score=78.21  Aligned_cols=66  Identities=17%  Similarity=0.098  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH---cCCCCccch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVL---GSKPTPEES-SVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekAL---eldP~~~d~-a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      -..+.|..++..|+|++|+..|++|+   +..|+.... ..+++|+|.+|..+|++++|+..+++|+++.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34599999999999999999999999   445543222 2689999999999999999999999998874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.43  E-value=5.8e-07  Score=80.56  Aligned_cols=65  Identities=15%  Similarity=0.132  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ..++|..+++.|++++|++.|+++++++|+.   ..+|+|+|.+|..+|++++|++.+++|+++..++
T Consensus       240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  304 (388)
T 1w3b_A          240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHF---PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence            3467777777777777777777777777753   3457777777777777777777777777765543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.43  E-value=8.3e-07  Score=73.07  Aligned_cols=98  Identities=21%  Similarity=0.162  Sum_probs=71.2

Q ss_pred             HhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          186 AERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      ++.+.|.+....++.+++  .|.+.....+.. ...+..|..+...|+|++|++.|+++++++|+.   ..+|+++|.+|
T Consensus        59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~  135 (243)
T 2q7f_A           59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVL  135 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence            444455555555555554  333333333322 444688999999999999999999999998864   45799999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCccCh
Q 022783          263 SKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+|++++|+..++++++...++.
T Consensus       136 ~~~~~~~~A~~~~~~~~~~~~~~~  159 (243)
T 2q7f_A          136 VKLEQPKLALPYLQRAVELNENDT  159 (243)
T ss_dssp             HHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhccHHHHHHHHHHHHHhCCccH
Confidence            999999999999999999876543

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.43  E-value=8.1e-07  Score=68.55  Aligned_cols=83  Identities=22%  Similarity=0.407  Sum_probs=61.4

Q ss_pred             cccceEEEEecC---CceeEEeeeCCC-CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           82 EKYEEYEVEIEQ---PYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        82 ~~~~~~~v~l~K---PlGl~~~~~~~G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      .+.+..+|+|.|   ++|+.+..+.++ +++|..|.|++.|+++|.|++||+|+++..   ..+ .....-.+...++..
T Consensus         8 ~~~~~~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng---~~v-~~~~~~~~~~~~~~~   83 (104)
T 3i4w_A            8 IPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNG---VDL-RNASHEQAAIALKNA   83 (104)
T ss_dssp             CCSSCEEEEEECBTTBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETT---EEC-TTCCHHHHHHHHHTS
T ss_pred             CCCccEEEEEEeCCCccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHcC
Confidence            344556777766   789999887666 999999999999999999999999999763   333 111223455566666


Q ss_pred             CCceEEEEeec
Q 022783          158 VGPLLMKMQKR  168 (292)
Q Consensus       158 ~g~v~l~l~r~  168 (292)
                      ..++.|.+.|.
T Consensus        84 ~~~v~l~v~r~   94 (104)
T 3i4w_A           84 GQTVTIIAQYK   94 (104)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEEC
Confidence            67889999884

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.43  E-value=9e-07  Score=71.49  Aligned_cols=86  Identities=20%  Similarity=0.371  Sum_probs=64.7

Q ss_pred             ccccccceEEEEecC----CceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhh
Q 022783           79 EQEEKYEEYEVEIEQ----PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (292)
Q Consensus        79 ~~~~~~~~~~v~l~K----PlGl~~~~~~-----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~  149 (292)
                      .+-.+.....|+|.|    +||+.+..+.     +.+++|..|.++|.|+++|.|++||+|+.+..   ..+ ......+
T Consensus        18 ~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg---~~v-~~~~~~~   93 (118)
T 3b76_A           18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDG---VEL-TEVSRSE   93 (118)
T ss_dssp             CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETT---EEG-GGSCHHH
T ss_pred             cccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EEC-CCCCHHH
Confidence            344455566677744    5899998764     34899999999999999999999999999763   211 2224557


Q ss_pred             HHHHhhccCCceEEEEeec
Q 022783          150 TMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus       150 ~~~ai~~r~g~v~l~l~r~  168 (292)
                      +..+|+...+.|.|++.|.
T Consensus        94 ~~~~l~~~~~~v~L~v~R~  112 (118)
T 3b76_A           94 AVALLKRTSSSIVLKALEV  112 (118)
T ss_dssp             HHHHHHSCCSEEEEEEEEE
T ss_pred             HHHHHHcCCCeEEEEEEEC
Confidence            7888887788899999885

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.43  E-value=5.2e-07  Score=76.04  Aligned_cols=62  Identities=10%  Similarity=0.130  Sum_probs=34.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      +.+|..+...|+|++|++.|+++++++|+.   ..+|+++|.+|..+|++++|+..+++|+++..
T Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  139 (272)
T 3u4t_A           78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT  139 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence            455555555555555555555555555542   23455555555555555555555555555533

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.42  E-value=9.5e-07  Score=72.71  Aligned_cols=95  Identities=9%  Similarity=0.060  Sum_probs=70.8

Q ss_pred             ccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783          189 NSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (292)
Q Consensus       189 N~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL  265 (292)
                      +.|.+...+++.+++  .|.+.....+.. ...+..|..+.+.|+|++|+..|+++++++|+.   ..+++++|.+|..+
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  172 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND---TEARFQFGMCLANE  172 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHc
Confidence            344444444444443  333333333322 445689999999999999999999999999963   45799999999999


Q ss_pred             CCHHHHHHHHHHHHHhCccCh
Q 022783          266 NQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       266 gq~eeALe~LekAIelG~~Df  286 (292)
                      |++++|+..++++++...++.
T Consensus       173 ~~~~~A~~~~~~~~~~~~~~~  193 (243)
T 2q7f_A          173 GMLDEALSQFAAVTEQDPGHA  193 (243)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999976543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.42  E-value=7.2e-08  Score=96.77  Aligned_cols=96  Identities=11%  Similarity=0.048  Sum_probs=52.2

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      .++++.|.+...+++.+++  .|.+..++.+.. .-++++|..+++.|+|++|++.|++||+++|++   ..+|+|+|.|
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~  510 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAAT  510 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHH
Confidence            3444455555444444443  444444433333 334577777777777777777777777777753   2334444544


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCcc
Q 022783          262 YSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~~  284 (292)
                      |..+|++++ +++|++|+++..+
T Consensus       511 ~~~~g~~~~-~~~~~~al~~~P~  532 (681)
T 2pzi_A          511 AELAGNTDE-HKFYQTVWSTNDG  532 (681)
T ss_dssp             HHHHTCCCT-TCHHHHHHHHCTT
T ss_pred             HHHcCChHH-HHHHHHHHHhCCc
Confidence            444444444 4444444444433

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.42  E-value=8.5e-07  Score=69.92  Aligned_cols=82  Identities=23%  Similarity=0.450  Sum_probs=63.9

Q ss_pred             ceEEEEecC----CceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +.++|+|.|    +||+.+..+.    +.++||..|.|+|.|+++|.|++||+|+.+-..   .+ ......++...|+.
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v-~~~~~~~~~~~l~~   80 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM---NF-ENMSNDDAVRVLRD   80 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ET-TSCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHh
Confidence            668899885    6999998763    469999999999999999999999999998632   11 11135567777875


Q ss_pred             c---CCceEEEEeeccC
Q 022783          157 R---VGPLLMKMQKRYG  170 (292)
Q Consensus       157 r---~g~v~l~l~r~~~  170 (292)
                      .   .++|.|++.|+.-
T Consensus        81 ~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           81 IVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             HHTSSSCEEEEEECCCC
T ss_pred             cccCCCeEEEEEEeCCC
Confidence            4   6789999999643

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.42  E-value=1.2e-06  Score=66.20  Aligned_cols=81  Identities=21%  Similarity=0.342  Sum_probs=59.6

Q ss_pred             ccceEEEEecC-----CceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           83 KYEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        83 ~~~~~~v~l~K-----PlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +.+..+|+|.|     .+|+.+..+. +.+++|..|.+++.|+++| |++||+|+++...   .+-.. ..-+....++.
T Consensus         4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v~~~-~~~~~~~~~~~   78 (91)
T 1m5z_A            4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHV---RTRDF-DCCLVVPLIAE   78 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTTC-CHHHHHHHHHT
T ss_pred             CcceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHc
Confidence            44678888876     6899998764 4599999999999999999 9999999998642   11111 12234455665


Q ss_pred             cCCceEEEEeec
Q 022783          157 RVGPLLMKMQKR  168 (292)
Q Consensus       157 r~g~v~l~l~r~  168 (292)
                      ...++.|.+.|.
T Consensus        79 ~g~~v~l~v~R~   90 (91)
T 1m5z_A           79 SGNKLDLVISRN   90 (91)
T ss_dssp             STTEEEEEEEEC
T ss_pred             CCCEEEEEEEeC
Confidence            556789998885

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.42  E-value=9.4e-07  Score=79.86  Aligned_cols=96  Identities=13%  Similarity=0.109  Sum_probs=71.3

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHc-----CC-CCc
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-------EQDLREGLQLYRTGKYEVAREKFESVLG-----SK-PTP  248 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-------~~~~n~G~~L~k~gdYeeAIe~fekALe-----ld-P~~  248 (292)
                      ..++.|.|.+...+++.+++  .|.+...+.++.       ....++|..+...|+|++|+..|++|++     .+ |  
T Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~--  261 (383)
T 3ulq_A          184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP--  261 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG--
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch--
Confidence            45666777777666666665  343333332211       2345999999999999999999999998     34 4  


Q ss_pred             cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          249 EESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       249 ~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                       ....+++|+|.+|..+|++++|+..+++|+++.
T Consensus       262 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          262 -SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             -GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence             346789999999999999999999999998873

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.41  E-value=1.1e-06  Score=68.67  Aligned_cols=84  Identities=29%  Similarity=0.525  Sum_probs=64.1

Q ss_pred             ccceEEEEecC---CceeEEe-----ee-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhh
Q 022783           83 KYEEYEVEIEQ---PYGLKFA-----KG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~-----~~-----~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~  149 (292)
                      +.+.++|+|.|   +||+.+.     .+     .+++++|..|.++|.|+++|.|++||+|+++...   .+ .....-+
T Consensus         7 ~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v-~~~~~~~   82 (108)
T 1q7x_A            7 PGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV---SL-EGATHKQ   82 (108)
T ss_dssp             SSSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTE---EC-BSCTTSH
T ss_pred             CCcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---EC-CCCCHHH
Confidence            44678999976   8999998     32     2469999999999999999999999999997631   11 1114446


Q ss_pred             HHHHhhccCCceEEEEeeccC
Q 022783          150 TMYTIRQRVGPLLMKMQKRYG  170 (292)
Q Consensus       150 ~~~ai~~r~g~v~l~l~r~~~  170 (292)
                      +..+++.....+.|.+.|...
T Consensus        83 ~~~~~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           83 AVETLRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             HHHHHHHTTSEEEEEEECCCC
T ss_pred             HHHHHHcCCCeEEEEEEeCCc
Confidence            667777666788999998544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.41  E-value=6.1e-07  Score=80.44  Aligned_cols=66  Identities=15%  Similarity=0.074  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ...++|..+.+.|++++|+..|+++++++|+.   ..+|+|+|.+|.++|++++|+..+++|+++..++
T Consensus       307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  372 (388)
T 1w3b_A          307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            34578888888888888888888888888863   4568888888888888888888888888876553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.41  E-value=2.8e-07  Score=88.10  Aligned_cols=97  Identities=16%  Similarity=0.067  Sum_probs=73.4

Q ss_pred             HhhccccchhhHHHH-HHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          186 AERNSGVISNRVREI-QMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       186 a~rN~GvI~~~l~ei-qea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      ++++.|.+...+.+. +++  .|.+..++.+.. .-++++|..+++.|+|++|+++|+++|+++|+    ..+|+|+|.+
T Consensus       104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~lg~~  179 (474)
T 4abn_A          104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----KVSLQNLSMV  179 (474)
T ss_dssp             HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----HHHHHHHHHH
Confidence            334444444444444 443  455554444443 44569999999999999999999999999997    3679999999


Q ss_pred             HHhc---------CCHHHHHHHHHHHHHhCccCh
Q 022783          262 YSKL---------NQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       262 yakL---------gq~eeALe~LekAIelG~~Df  286 (292)
                      |..+         |++++|+..+++|+++..++.
T Consensus       180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  213 (474)
T 4abn_A          180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG  213 (474)
T ss_dssp             HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence            9999         999999999999999987654

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=98.41  E-value=4.5e-07  Score=69.05  Aligned_cols=72  Identities=19%  Similarity=0.372  Sum_probs=57.5

Q ss_pred             CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCccccccc--chhhHHHHhhccCCceEEEEeeccC
Q 022783           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKMQKRYG  170 (292)
Q Consensus        93 KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~--~~g~~~~ai~~r~g~v~l~l~r~~~  170 (292)
                      .+||+.+..+.+|+++|..|.++|.|++++.+++||+|+++..      ++..  .+.++...|+...+++.|++.|+..
T Consensus        13 ~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing------~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~   86 (88)
T 1kwa_A           13 EPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREING------ISVANQTVEQLQKMLREMRGSITFKIVPSYR   86 (88)
T ss_dssp             SCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETT------EEGGGSCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred             CceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC------EECCCCCHHHHHHHHhcCCCcEEEEEECCcC
Confidence            3599999876678999999999999999555999999999863      2233  5567778888777799999988543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.40  E-value=6.7e-07  Score=83.72  Aligned_cols=68  Identities=19%  Similarity=0.321  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHc----------------CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLG----------------SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALe----------------ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI  279 (292)
                      ..++++|+.+++.|+|++|+..|++||+                ++|.   ...+|+|+|.||.++|++++|+++|++||
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~---~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV---ALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH---HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4456999999999999999999999998                5553   45789999999999999999999999999


Q ss_pred             HhCccCh
Q 022783          280 LAGYEDF  286 (292)
Q Consensus       280 elG~~Df  286 (292)
                      ++..++.
T Consensus       301 ~~~p~~~  307 (370)
T 1ihg_A          301 EIDPSNT  307 (370)
T ss_dssp             TTCTTCH
T ss_pred             HhCchhH
Confidence            9987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.40  E-value=4.9e-08  Score=71.77  Aligned_cols=91  Identities=13%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc---hhHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVAC  260 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d---~a~a~YN~Ac  260 (292)
                      +++.|.+....++.+++  .|.+...+.+.. .-.+++|..+++.|+|++|++.|+++|+++|++.+   ...++++++.
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~   86 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL   86 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence            34444444444444443  455554444443 44569999999999999999999999999997422   1567999999


Q ss_pred             HHHhcCCHHHHHHHHHH
Q 022783          261 CYSKLNQVKAGLSALED  277 (292)
Q Consensus       261 cyakLgq~eeALe~Lek  277 (292)
                      ++..+|++++|+..+++
T Consensus        87 ~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           87 AQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHhHhhhHhHHHH
Confidence            99999998888776554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.40  E-value=2.7e-07  Score=70.52  Aligned_cols=60  Identities=10%  Similarity=0.080  Sum_probs=48.2

Q ss_pred             HcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       227 k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..|+|++|+..|+++|+++++.++...+|+|+|.||..+|++++|+..+++|+++..++.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   61 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ   61 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence            468999999999999999533334567899999999999999999999999999987754

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.40  E-value=7.1e-07  Score=69.75  Aligned_cols=85  Identities=18%  Similarity=0.353  Sum_probs=63.5

Q ss_pred             cccceEEEEecC---CceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhH
Q 022783           82 EKYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (292)
Q Consensus        82 ~~~~~~~v~l~K---PlGl~~~~~--------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~  150 (292)
                      +..+.++|+|.|   +||+.+...        .+.++||..|.|++.|+++|.|++||+|+.+..   ..+ .....-++
T Consensus         6 ~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng---~~v-~~~~~~~~   81 (107)
T 1wf8_A            6 SGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDG---ISL-VGVTQNFA   81 (107)
T ss_dssp             CCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETT---EEC-BSCCHHHH
T ss_pred             CCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHH
Confidence            356778888855   789999872        245899999999999999999999999999763   111 11123355


Q ss_pred             HHHhhccCCceEEEEeeccC
Q 022783          151 MYTIRQRVGPLLMKMQKRYG  170 (292)
Q Consensus       151 ~~ai~~r~g~v~l~l~r~~~  170 (292)
                      ..+++....++.|++.|...
T Consensus        82 ~~~~~~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           82 ATVLRNTKGNVRFVIGREKP  101 (107)
T ss_dssp             HHHHHHCCSEEEEEEEEECC
T ss_pred             HHHHhcCCCeEEEEEEeCCC
Confidence            66777667789999998643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.38  E-value=4.2e-07  Score=83.32  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc--------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE--------------SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d--------------~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..++++|+.+++.|+|++|+..|++||.++|++..              ...+|+|+|.||.++|++++|+.+|++||++
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  259 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE  259 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44569999999999999999999999999996310              0138999999999999999999999999999


Q ss_pred             CccCh
Q 022783          282 GYEDF  286 (292)
Q Consensus       282 G~~Df  286 (292)
                      ..++.
T Consensus       260 ~p~~~  264 (338)
T 2if4_A          260 EEKNP  264 (338)
T ss_dssp             CTTCH
T ss_pred             CCCCH
Confidence            87654

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.38  E-value=1.8e-06  Score=67.37  Aligned_cols=85  Identities=16%  Similarity=0.409  Sum_probs=64.7

Q ss_pred             ccceEEEEecC---CceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhh
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~  149 (292)
                      .++.++|+|.|   ++|+.+..+.          +.+++|..|.+++.|+++|.|++||+|+.+-.   ..+ ....+-+
T Consensus         6 ~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng---~~v-~~~~~~~   81 (107)
T 1uhp_A            6 SGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNG---RDL-SRATHDQ   81 (107)
T ss_dssp             SSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETT---EEC-TTCCHHH
T ss_pred             CcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECC---EEC-CCCCHHH
Confidence            45778999986   5999997643          45999999999999999944999999999753   222 2233456


Q ss_pred             HHHHhhccCCceEEEEeeccCC
Q 022783          150 TMYTIRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       150 ~~~ai~~r~g~v~l~l~r~~~~  171 (292)
                      ++..|+....++.|++.|.-..
T Consensus        82 ~~~~~~~~~~~v~l~v~R~~~~  103 (107)
T 1uhp_A           82 AVEAFKTAKEPIVVQVLRRTSG  103 (107)
T ss_dssp             HHHHHHHCCSSEEEEEEECCSS
T ss_pred             HHHHHHcCCCcEEEEEEeCCCC
Confidence            7777877677899999886543

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.38  E-value=1.6e-06  Score=66.90  Aligned_cols=84  Identities=24%  Similarity=0.417  Sum_probs=63.2

Q ss_pred             cceEEEEecC---CceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783           84 YEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (292)
Q Consensus        84 ~~~~~v~l~K---PlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a  153 (292)
                      .+.++|+|.|   +||+.+..+.       +.+++|..|.+++.|+++|.|++||+|+.+..   ..+ .......+..+
T Consensus         3 ~~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng---~~v-~~~~~~~~~~~   78 (102)
T 2i1n_A            3 FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE---VDV-SEVVHSRAVEA   78 (102)
T ss_dssp             EEEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETT---EEC-SSCCHHHHHHH
T ss_pred             ceEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHHHH
Confidence            3556777775   6899998754       35999999999999999999999999999763   222 11224566677


Q ss_pred             hhccCCceEEEEeeccCC
Q 022783          154 IRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       154 i~~r~g~v~l~l~r~~~~  171 (292)
                      ++....++.|.+.|....
T Consensus        79 ~~~~g~~v~l~v~R~~~~   96 (102)
T 2i1n_A           79 LKEAGPVVRLVVRRRQPP   96 (102)
T ss_dssp             HHHSCSEEEEEEEEECCC
T ss_pred             HHcCCCeEEEEEEeCCCC
Confidence            777667889999986544

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.38  E-value=1.5e-06  Score=70.11  Aligned_cols=85  Identities=22%  Similarity=0.419  Sum_probs=66.5

Q ss_pred             ccccceEEEEecC----CceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--h
Q 022783           81 EEKYEEYEVEIEQ----PYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--Y  147 (292)
Q Consensus        81 ~~~~~~~~v~l~K----PlGl~~~~~-------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~  147 (292)
                      +...+.++|+|.|    +||+.+...       .+++++|..|.+++.|+++|.|++||+|+++...      +...  +
T Consensus        11 ~~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~------~v~~~~~   84 (129)
T 2dmz_A           11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGV------NIQGFAN   84 (129)
T ss_dssp             SCCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTB------CCTTCCH
T ss_pred             CCCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE------ECCCCCH
Confidence            3456889999954    799999874       3468999999999999999999999999998742      2223  5


Q ss_pred             hhHHHHhhccCCceEEEEeeccCC
Q 022783          148 GRTMYTIRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       148 g~~~~ai~~r~g~v~l~l~r~~~~  171 (292)
                      .++..+|+.....|.|++.|.-..
T Consensus        85 ~~~~~~l~~~~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           85 HDVVEVLRNAGQVVHLTLVRRKTS  108 (129)
T ss_dssp             HHHHHHHHHCCSSEEEEEEEESSS
T ss_pred             HHHHHHHHcCCCeEEEEEEeCCcc
Confidence            567777877667889999986543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.38  E-value=1.5e-06  Score=72.53  Aligned_cols=62  Identities=18%  Similarity=0.133  Sum_probs=32.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHc--CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALe--ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      +..|..++..|+|++|++.|++++.  .+|.   ...+|+++|.+|..+|++++|+..++++++...
T Consensus       109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  172 (252)
T 2ho1_A          109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPE---RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR  172 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhCccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence            3555555555555555555555555  3332   233455555555555555555555555555543

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.38  E-value=1.3e-06  Score=69.25  Aligned_cols=86  Identities=20%  Similarity=0.397  Sum_probs=61.2

Q ss_pred             ccccccceEEEEecC---CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783           79 EQEEKYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (292)
Q Consensus        79 ~~~~~~~~~~v~l~K---PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a  153 (292)
                      .+-...+.++|+|.|   ++|+.+..+.  +.+++|..|.+++.|+++|.|++||+|+++..   ..+ ......++...
T Consensus        18 ~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng---~~v-~~~~~~~~~~~   93 (112)
T 2r4h_A           18 LYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEING---ETT-KNMKHSRAIEL   93 (112)
T ss_dssp             -----CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETT---EEC-TTCCHHHHHHH
T ss_pred             cccCCCceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHH
Confidence            344455667888876   5899987654  46999999999999999999999999999763   222 11134456667


Q ss_pred             hhccCCceEEEEeec
Q 022783          154 IRQRVGPLLMKMQKR  168 (292)
Q Consensus       154 i~~r~g~v~l~l~r~  168 (292)
                      ++....+|.|++.|.
T Consensus        94 l~~~g~~v~l~v~R~  108 (112)
T 2r4h_A           94 IKNGGRRVRLFLKRG  108 (112)
T ss_dssp             HHTTTTEEEEEEECC
T ss_pred             HHcCCCeEEEEEEeC
Confidence            776556789999885

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.38  E-value=8e-07  Score=75.98  Aligned_cols=94  Identities=19%  Similarity=0.208  Sum_probs=67.8

Q ss_pred             hccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          188 RNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       188 rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      .+.|.+....++.+++  .|.+.....+.. ......|..++..|+|++|+..|+++++++|+.   ..+|+++|.+|..
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~  252 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY---VRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence            3344444444444443  333333333332 334689999999999999999999999998863   4579999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCcc
Q 022783          265 LNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~~  284 (292)
                      +|++++|+..+++|+++..+
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHHhCCc
Confidence            99999999999999888655

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.37  E-value=1.6e-06  Score=74.34  Aligned_cols=64  Identities=11%  Similarity=0.030  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 022783          214 RREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAG  282 (292)
Q Consensus       214 ~~~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq~eeALe~LekAIelG  282 (292)
                      .....+++|..+..    .+++++|+..|+++++.+.     ..+++|+|.+|..    .+++++|+..+++|++.|
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY-----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCC-----ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence            33445577777777    7777777777777776641     3467777777777    777777777777777776

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.37  E-value=1.8e-06  Score=73.93  Aligned_cols=91  Identities=18%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             ccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783          189 NSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (292)
Q Consensus       189 N~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL  265 (292)
                      +.|.+....++.+++  .|.+.....+.. ...+..|..+...|+|++|+..|+++++++|+.   ..+|+++|.+|..+
T Consensus       130 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~  206 (330)
T 3hym_B          130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED---PFVMHEVGVVAFQN  206 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHc
Confidence            344444444444443  344443333332 445689999999999999999999999999974   46799999999999


Q ss_pred             CCHHHHHHHHHHHHHhC
Q 022783          266 NQVKAGLSALEDALLAG  282 (292)
Q Consensus       266 gq~eeALe~LekAIelG  282 (292)
                      |++++|+..+++|+++.
T Consensus       207 ~~~~~A~~~~~~a~~~~  223 (330)
T 3hym_B          207 GEWKTAEKWFLDALEKI  223 (330)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHh
Confidence            99999999999998863

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.36  E-value=1.4e-06  Score=67.85  Aligned_cols=85  Identities=21%  Similarity=0.427  Sum_probs=63.0

Q ss_pred             ccccceEEEEe--cC---CceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchh
Q 022783           81 EEKYEEYEVEI--EQ---PYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (292)
Q Consensus        81 ~~~~~~~~v~l--~K---PlGl~~~~~-------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g  148 (292)
                      +...+.++|+|  ++   +||+.+..+       .+.+++|..|.+++.|+++|.|++||+|+++...   .+-. ..+.
T Consensus         8 ~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~-~~~~   83 (108)
T 2jre_A            8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV---NVQG-MAQS   83 (108)
T ss_dssp             SSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTE---ECTT-SCHH
T ss_pred             ccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHH
Confidence            34567899999  44   489999764       3459999999999999999999999999998632   1111 1244


Q ss_pred             hHHHHhhccCCceEEEEeecc
Q 022783          149 RTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       149 ~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      ++..+|+....++.|++.|.-
T Consensus        84 ~~~~~l~~~g~~v~l~v~R~~  104 (108)
T 2jre_A           84 DVVEVLRNAGNPVRLLLIRRL  104 (108)
T ss_dssp             HHHHHHHHHCSEEEEEEEECC
T ss_pred             HHHHHHHcCCCeEEEEEEeCC
Confidence            566777765567899998853

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.36  E-value=2.3e-07  Score=93.14  Aligned_cols=96  Identities=9%  Similarity=-0.042  Sum_probs=76.8

Q ss_pred             hccccchhhHHHHHHHh---hHHHHHhhHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          188 RNSGVISNRVREIQMQN---YMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       188 rN~GvI~~~l~eiqea~---Y~kkk~lk~~-~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      ...|....++..++...   +.......+. ..-.+.+|..+++.|+|++|++.|+++++++|++   ..+|+|+|.+|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR---WRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---HHHHHHHHHHHH
Confidence            77888888888888764   3222222233 3556799999999999999999999999999974   567999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCccCh
Q 022783          264 KLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~Df  286 (292)
                      .+|++++|++++++|+++..++.
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~~~  501 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPGEL  501 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCS
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999987754

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.36  E-value=1.3e-06  Score=69.42  Aligned_cols=81  Identities=21%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             ceEEEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CC
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG  159 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g  159 (292)
                      +..+|+|.|   |||+.+..+.+|.+||..|.+||-|+++|.|.+||.|+.+...   .| ....-.++...++.-  ..
T Consensus         5 ~~k~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~---~v-~g~~h~evv~lLk~~~~g~   80 (95)
T 3gge_A            5 IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGE---NI-VGWRHYDVAKKLKELKKEE   80 (95)
T ss_dssp             EEEEEEEECCSSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHSCTTC
T ss_pred             eEEEEEEEECCCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCE---Ec-cCCCHHHHHHHHHhCCCCC
Confidence            456788876   9999998767889999999999999999999999999998742   11 112233677788864  34


Q ss_pred             ceEEEEeecc
Q 022783          160 PLLMKMQKRY  169 (292)
Q Consensus       160 ~v~l~l~r~~  169 (292)
                      ++.|+|-+|-
T Consensus        81 ~~~L~lv~p~   90 (95)
T 3gge_A           81 LFTMKLIEPK   90 (95)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEECcc
Confidence            6889888764

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.36  E-value=2.1e-06  Score=66.87  Aligned_cols=83  Identities=22%  Similarity=0.432  Sum_probs=63.3

Q ss_pred             ccceEEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           83 KYEEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        83 ~~~~~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      .....+|+|.|    ++|+.+..+.+  .+++|..|.+++.|+++| |++||+|+++...   .+ ....+.++...|+.
T Consensus        13 ~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v-~~~~~~~~~~~l~~   87 (104)
T 1wi2_A           13 QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDV---DF-QDIEHSKAVEILKT   87 (104)
T ss_dssp             SSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTE---EC-SSCCHHHHHHHHHH
T ss_pred             CCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHhC
Confidence            33457788876    48899987644  489999999999999999 9999999997632   11 11226677778887


Q ss_pred             cCCceEEEEeeccCC
Q 022783          157 RVGPLLMKMQKRYGK  171 (292)
Q Consensus       157 r~g~v~l~l~r~~~~  171 (292)
                       ..++.|+++|...+
T Consensus        88 -~~~v~l~v~r~~~~  101 (104)
T 1wi2_A           88 -AREISMRVRFFSGP  101 (104)
T ss_dssp             -SSSEEEEEECCCCS
T ss_pred             -CCEEEEEEEECCCC
Confidence             67899999997654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.35  E-value=1e-06  Score=79.70  Aligned_cols=98  Identities=10%  Similarity=0.037  Sum_probs=71.1

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhh-------H-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---cc
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQK-------E-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EE  250 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk-------~-~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~---~d  250 (292)
                      ..++++.|.+...+++...+  .|.++..+-       . ......+.|..+...|+|++|++.|++||++.|..   ..
T Consensus       143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  222 (383)
T 3ulq_A          143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL  222 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence            34555666666555555554  333333321       1 12334599999999999999999999999775532   23


Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          251 SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       251 ~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ...+++|+|.||..+|++++|+..+++|+++
T Consensus       223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999985

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.35  E-value=1.3e-06  Score=70.68  Aligned_cols=65  Identities=14%  Similarity=0.088  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .-.++.|..+.+.|+|++|+..|+++++.+|+.   ..+|+++|.+|..+|++++|+..++++++...
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            345699999999999999999999999999974   46799999999999999999999999999876

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.35  E-value=2.5e-06  Score=66.85  Aligned_cols=82  Identities=24%  Similarity=0.415  Sum_probs=61.3

Q ss_pred             ceEEEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      +..+|+|.|   +||+.+..+.+.+++|..|.+++.|+++|.|++||+|+++..   ..+ ......++...|+.....|
T Consensus        15 ~~~~v~l~~~~~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng---~~v-~~~~~~~~~~~l~~~g~~v   90 (111)
T 2dlu_A           15 HVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGG---TNV-QGMTSEQVAQVLRNCGNSV   90 (111)
T ss_dssp             EEEEEEEECCSSCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESS---CCC-TTSCHHHHHHHHHHHCSEE
T ss_pred             ceEEEEEEeCCCccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhCCCeE
Confidence            446677654   699999887778999999999999999999999999999763   111 1112345566666555678


Q ss_pred             EEEEeeccC
Q 022783          162 LMKMQKRYG  170 (292)
Q Consensus       162 ~l~l~r~~~  170 (292)
                      .|++.|...
T Consensus        91 ~l~v~R~~~   99 (111)
T 2dlu_A           91 RMLVARDPA   99 (111)
T ss_dssp             EEEEEESCT
T ss_pred             EEEEEeCCC
Confidence            999988544

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.34  E-value=2.1e-06  Score=66.20  Aligned_cols=79  Identities=20%  Similarity=0.414  Sum_probs=60.0

Q ss_pred             ceEEEEecC----CceeEEeeeCC-----------CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--h
Q 022783           85 EEYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--Y  147 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~~-----------G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~  147 (292)
                      ..|.|+|.|    .||+.+....+           ++++|..|.|+|.|+++|.|++||+|+++...      +...  +
T Consensus         4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~------~v~~~~~   77 (103)
T 2fcf_A            4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM------DLRDASH   77 (103)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTE------ECTTCCH
T ss_pred             CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCE------ECCCCCH
Confidence            347777775    47888865432           58999999999999999999999999997631      2233  6


Q ss_pred             hhHHHHhhccCCceEEEEeecc
Q 022783          148 GRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       148 g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      .++..+|+...+++.|++.|.-
T Consensus        78 ~~~~~~l~~~~~~v~l~v~r~~   99 (103)
T 2fcf_A           78 EQAVEAIRKAGNPVVFMVQSII   99 (103)
T ss_dssp             HHHHHHHHTCCSSEEEEEECCC
T ss_pred             HHHHHHHHhCCCcEEEEEEECC
Confidence            6777888877789999998853

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=98.34  E-value=2.4e-06  Score=65.09  Aligned_cols=81  Identities=28%  Similarity=0.531  Sum_probs=61.1

Q ss_pred             ceEEEEec---CCceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           85 EEYEVEIE---QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        85 ~~~~v~l~---KPlGl~~~~~~-----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +.++|+|.   .+||+.+..+.     +++++|..|.+++.|+++|.|++||+|+++...   .+ ....+.++...++.
T Consensus         5 ~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v-~~~~~~~~~~~l~~   80 (96)
T 1d5g_A            5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV---SL-EGATHKQAVETLRN   80 (96)
T ss_dssp             CEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHS
T ss_pred             CEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHc
Confidence            56778875   57999998653     359999999999999999999999999997631   11 11144566677776


Q ss_pred             cCCceEEEEeecc
Q 022783          157 RVGPLLMKMQKRY  169 (292)
Q Consensus       157 r~g~v~l~l~r~~  169 (292)
                      ...++.|.+.|..
T Consensus        81 ~g~~v~l~v~R~~   93 (96)
T 1d5g_A           81 TGQVVHLLLEKGQ   93 (96)
T ss_dssp             CCSEEEEEEECCS
T ss_pred             CCCeEEEEEEcCC
Confidence            5567899998854

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.34  E-value=1.1e-06  Score=84.50  Aligned_cols=97  Identities=12%  Similarity=0.081  Sum_probs=77.2

Q ss_pred             HhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          186 AERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      ++.+.|.+...+++.+++  .|.+...+.+.. .-.+++|..+.+.|+|++|++.|+++++++|++   ..+++|+|.+|
T Consensus        59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~  135 (568)
T 2vsy_A           59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWR  135 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence            445556666555555554  455554444443 445699999999999999999999999999974   46799999999


Q ss_pred             Hhc---CCHHHHHHHHHHHHHhCccC
Q 022783          263 SKL---NQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       263 akL---gq~eeALe~LekAIelG~~D  285 (292)
                      ..+   |++++|++.+++|++.+..+
T Consensus       136 ~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          136 RRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999   99999999999999998764

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=98.34  E-value=1.9e-06  Score=67.06  Aligned_cols=82  Identities=24%  Similarity=0.438  Sum_probs=60.6

Q ss_pred             eEEEEecC---CceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh
Q 022783           86 EYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (292)
Q Consensus        86 ~~~v~l~K---PlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~  155 (292)
                      .++|+|.|   ++|+.+..+.       +.+++|..|.++|.|+++|.|++||+|+++..   ..+ .....-++...++
T Consensus         4 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng---~~v-~~~~~~~~~~~~~   79 (105)
T 2awx_A            4 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS---VSL-EEVTHEEAVTALK   79 (105)
T ss_dssp             EEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETT---EEC-TTCBHHHHHHHHH
T ss_pred             EEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHH
Confidence            45677654   7899998653       25999999999999999999999999999763   222 1123445667777


Q ss_pred             ccCCceEEEEeeccCC
Q 022783          156 QRVGPLLMKMQKRYGK  171 (292)
Q Consensus       156 ~r~g~v~l~l~r~~~~  171 (292)
                      .....+.|++.|....
T Consensus        80 ~~~~~v~l~v~R~~~~   95 (105)
T 2awx_A           80 NTSDFVYLKVAKPTSM   95 (105)
T ss_dssp             SCCSEEEEEEECCCC-
T ss_pred             cCCCeEEEEEEcCCCC
Confidence            6667889999986543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.33  E-value=8.7e-07  Score=79.40  Aligned_cols=63  Identities=13%  Similarity=0.054  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCcc
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKA-GLSALEDALLAGYE  284 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~ee-ALe~LekAIelG~~  284 (292)
                      +++|..+.+.|+|++|++.|+++|+++|++   ..+|+|++.++..+|+.++ +...+++++++.++
T Consensus       204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          204 NGQAACHMAQGRWEAAEGVLQEALDKDSGH---PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            356666667777777777777777766653   3356677777777776654 34566666666654

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.33  E-value=1.2e-06  Score=70.01  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=62.1

Q ss_pred             eEEEEecC----CceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           86 EYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        86 ~~~v~l~K----PlGl~~~~~~~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      .++|+|.|    +||+.+..+.+   ++++|..|.+++.|+++|.|++||+|+++..   ..+ ....+.++...|+...
T Consensus        16 ~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing---~~v-~~~~~~~~~~~l~~~g   91 (117)
T 1v62_A           16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDG---TSM-EHCSLLEATKLLASIS   91 (117)
T ss_dssp             SEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETT---EET-TSCCHHHHHHHHHSCS
T ss_pred             cEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhCC
Confidence            46677765    68999987643   4699999999999999999999999999763   222 1134556778888666


Q ss_pred             CceEEEEeeccC
Q 022783          159 GPLLMKMQKRYG  170 (292)
Q Consensus       159 g~v~l~l~r~~~  170 (292)
                      ..|.|++.|..-
T Consensus        92 ~~v~l~v~r~~~  103 (117)
T 1v62_A           92 EKVRLEILPVPQ  103 (117)
T ss_dssp             SEEEEEECCBTT
T ss_pred             CeEEEEEEECCC
Confidence            788999988654

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.32  E-value=1.9e-06  Score=69.21  Aligned_cols=85  Identities=14%  Similarity=0.236  Sum_probs=64.2

Q ss_pred             cccceEEEEecC---CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           82 EKYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        82 ~~~~~~~v~l~K---PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      ...+.++|+|.|   .+|+.+..+.  +++++|..|.+++.|+++|.|++||+|+++...   .+ ......+++.+|+.
T Consensus        16 ~~~~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v-~~~~~~~~~~~l~~   91 (123)
T 1ueq_A           16 LKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV---CV-LGHTHADVVKLFQS   91 (123)
T ss_dssp             CCSEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTE---EC-TTSCHHHHHHHHHT
T ss_pred             CCCcEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHh
Confidence            344678888887   4889988653  458999999999999999999999999997631   11 11135567788886


Q ss_pred             c--CCceEEEEeeccC
Q 022783          157 R--VGPLLMKMQKRYG  170 (292)
Q Consensus       157 r--~g~v~l~l~r~~~  170 (292)
                      .  ...|.|++.|...
T Consensus        92 ~~~g~~v~l~v~R~~~  107 (123)
T 1ueq_A           92 VPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             SCTTCEEEEEEEESCC
T ss_pred             CCCCCeEEEEEEeCCC
Confidence            4  4678999999653

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.32  E-value=1.7e-06  Score=64.93  Aligned_cols=75  Identities=24%  Similarity=0.470  Sum_probs=58.1

Q ss_pred             EEEEec--CCceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhccCCc
Q 022783           87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGP  160 (292)
Q Consensus        87 ~~v~l~--KPlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r~g~  160 (292)
                      ++|+++  .|+|+.+..+.+  .+++|..|.|++.|+++| +++||+|+.+...      +...  +.++...|+....+
T Consensus         4 ~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~   76 (87)
T 2pa1_A            4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGE------SAEGMLHAEAQSKIRQSPSP   76 (87)
T ss_dssp             EEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTE------ESTTCCHHHHHHHHHTCCSS
T ss_pred             EEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCe
Confidence            444444  478999987654  589999999999999999 9999999997632      2223  56677788866689


Q ss_pred             eEEEEeec
Q 022783          161 LLMKMQKR  168 (292)
Q Consensus       161 v~l~l~r~  168 (292)
                      +.|.+.|.
T Consensus        77 v~l~v~R~   84 (87)
T 2pa1_A           77 LRLQLDRI   84 (87)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            99999985

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.31  E-value=1.6e-06  Score=78.37  Aligned_cols=65  Identities=18%  Similarity=0.030  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ....|..+.+.|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+..+++|+++..++
T Consensus       298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDN---VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence            4588899999999999999999999998863   4679999999999999999999999999987664

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.31  E-value=1.6e-06  Score=65.48  Aligned_cols=79  Identities=19%  Similarity=0.352  Sum_probs=59.8

Q ss_pred             ceEEEEecC----CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      ..++|+|.|    ++|+.+..+.  +.+++|..|.+++.|+++|.+++||+|+.+..   ..+ ....+.++...++...
T Consensus         4 ~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing---~~v-~~~~~~~~~~~~~~~~   79 (90)
T 1qav_A            4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG---EDL-SSATHDEAVQALKKTG   79 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETT---EEC-TTCCHHHHHHHHHTCC
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhCC
Confidence            457788877    7999998763  35899999999999999945999999999763   111 1123456677787666


Q ss_pred             CceEEEEee
Q 022783          159 GPLLMKMQK  167 (292)
Q Consensus       159 g~v~l~l~r  167 (292)
                      .++.|+++|
T Consensus        80 ~~v~l~v~r   88 (90)
T 1qav_A           80 KEVVLEVKY   88 (90)
T ss_dssp             SEEEEEEEE
T ss_pred             CeEEEEEEE
Confidence            788998887

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.31  E-value=2.4e-06  Score=67.72  Aligned_cols=79  Identities=25%  Similarity=0.389  Sum_probs=59.8

Q ss_pred             eEEEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           86 EYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        86 ~~~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      ..+|+|.|    +||+.+... +++++|..|.+++.|+++|.+++||+|+++..   ..+ ....+.++...|+...+.+
T Consensus        26 ~~~v~l~k~~~~~lG~~i~~~-~~gv~V~~V~~~spA~~aGll~~GD~I~~vng---~~v-~~~~~~~~~~~l~~~~~~v  100 (113)
T 1va8_A           26 VKIVRIEKARDIPLGATVRNE-MDSVIISRIVKGGAAEKSGLLHEGDEVLEING---IEI-RGKDVNEVFDLLSDMHGTL  100 (113)
T ss_dssp             CEEEEEEECTTCCCCEEEEEC-SSSEEEEEECTTSHHHHHTCCCTTCEEEEETT---EEC-TTCCHHHHHHHHHHCCEEE
T ss_pred             eEEEEEEeCCCCceeEEEEeC-CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHcCCCeE
Confidence            34566664    889888764 67999999999999999996699999999763   111 1124556778888777889


Q ss_pred             EEEEeecc
Q 022783          162 LMKMQKRY  169 (292)
Q Consensus       162 ~l~l~r~~  169 (292)
                      .|++.|..
T Consensus       101 ~l~v~r~~  108 (113)
T 1va8_A          101 TFVLIPSS  108 (113)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            99998743

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.31  E-value=3.5e-06  Score=67.79  Aligned_cols=64  Identities=19%  Similarity=0.216  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcC---CCCc-cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGS---KPTP-EESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALel---dP~~-~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..+.|..+...|+|++|+..|++++++   .++. .....+++|+|.+|..+|++++|+..+++|+++
T Consensus        69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A           69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            347778888888888888888888765   3321 133556778888888888888888888877755

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.31  E-value=2e-06  Score=72.91  Aligned_cols=66  Identities=14%  Similarity=0.034  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeld-----P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ....++|..+...|+|++|+..|++++++.     ++......+++++|.+|..+|++++|++.+++|+++
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344699999999999999999999999874     333355678999999999999999999999999987

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.30  E-value=3.9e-06  Score=65.64  Aligned_cols=86  Identities=13%  Similarity=0.322  Sum_probs=63.5

Q ss_pred             ccceEEEEecC---CceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~~-----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      ..+.+.+++.|   ++|+.+....+     ++++|..|.+++.|+++|.|++||+|+++-.   ..+ ....+.++...|
T Consensus         9 ~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing---~~v-~~~~~~~~~~~l   84 (111)
T 2koj_A            9 VGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG---VDL-AGKSQEEVVSLL   84 (111)
T ss_dssp             SCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETT---EEC-TTSCHHHHHHHH
T ss_pred             cCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHH
Confidence            34667888764   78999987643     5899999999999999998999999999763   223 111244566777


Q ss_pred             hcc--CCceEEEEeeccCCc
Q 022783          155 RQR--VGPLLMKMQKRYGKM  172 (292)
Q Consensus       155 ~~r--~g~v~l~l~r~~~~~  172 (292)
                      +..  ..+|.|++.|.-..+
T Consensus        85 ~~~~~g~~v~l~v~R~~~~~  104 (111)
T 2koj_A           85 RSTKMEGTVSLLVFRQEEAF  104 (111)
T ss_dssp             HHCCCSSEEEEEEEECCCCC
T ss_pred             HhCCCCCeEEEEEEeCCCCc
Confidence            753  457899998865444

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.30  E-value=2.9e-06  Score=64.00  Aligned_cols=78  Identities=15%  Similarity=0.376  Sum_probs=60.0

Q ss_pred             EEEEecC---CceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccch--hhHHHHhhccCCc
Q 022783           87 YEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRVGP  160 (292)
Q Consensus        87 ~~v~l~K---PlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~--g~~~~ai~~r~g~  160 (292)
                      ..|+|.|   ++|+.+..+.+ .+++|..|.+++.|+++| |++||+|+.+...      +...+  .++...|+....+
T Consensus         6 r~v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~   78 (90)
T 2he4_A            6 RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQ------NVEGLRHAEVVASIKAREDE   78 (90)
T ss_dssp             EEEEEECBTTBCCEEEEECSSSSSEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECTTSCHHHHHHHHTTSSSE
T ss_pred             EEEEEEECCCCccEEEEccCCCCCEEEEEECCCChHHHCC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCc
Confidence            4566654   58899887654 589999999999999999 9999999997642      22233  5677788876778


Q ss_pred             eEEEEeeccCC
Q 022783          161 LLMKMQKRYGK  171 (292)
Q Consensus       161 v~l~l~r~~~~  171 (292)
                      +.|.+.|+-.+
T Consensus        79 v~l~v~r~~~~   89 (90)
T 2he4_A           79 ARLLVVGPSTR   89 (90)
T ss_dssp             EEEEEECCCCC
T ss_pred             EEEEEEccCCC
Confidence            99999986543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.30  E-value=1.7e-06  Score=77.03  Aligned_cols=63  Identities=8%  Similarity=-0.017  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc---chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~---d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..+.|..+.. |+|++|+..|++||++.|...   ....+++|+|.+|..+|++++|+..+++|+++
T Consensus       119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3477777766 777777777777776655321   12456777777777777777777777777765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.30  E-value=3.7e-06  Score=72.36  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ...+..|..+...|+|++|+..|+++++++|+.   ..+|+++|.+|..+|++++|+..+++|++...++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  222 (359)
T 3ieg_A          155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK  222 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccch
Confidence            345699999999999999999999999999974   46799999999999999999999999999977654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.29  E-value=2.8e-06  Score=69.12  Aligned_cols=77  Identities=17%  Similarity=0.089  Sum_probs=62.9

Q ss_pred             HhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783          203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (292)
Q Consensus       203 a~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIe  280 (292)
                      ..|.+.....+.. .-.+++|..+...|+|++|+..|+++|+.+|++.+ ..+|+|++.+|..+|+.++|+.++.++|.
T Consensus        95 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A           95 KRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            3455544444443 44579999999999999999999999999997533 34799999999999999999999999985

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.29  E-value=2.6e-06  Score=68.24  Aligned_cols=82  Identities=23%  Similarity=0.412  Sum_probs=61.9

Q ss_pred             ccceEEEEecC---CceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHH
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~  152 (292)
                      +.+..+|+|.|   ++|+.+..+.       +.+++|..|.++|.|+++|.|++||+|+++..   ..+ ......++..
T Consensus        22 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng---~~v-~~~~~~~~~~   97 (117)
T 2byg_A           22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNN---YSL-EEVTHEEAVA   97 (117)
T ss_dssp             EEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETT---EEC-TTCCHHHHHH
T ss_pred             CCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHH
Confidence            33456677754   7899998653       35899999999999999999999999999763   111 1124556778


Q ss_pred             HhhccCCceEEEEeec
Q 022783          153 TIRQRVGPLLMKMQKR  168 (292)
Q Consensus       153 ai~~r~g~v~l~l~r~  168 (292)
                      .|+.....|.|++.|.
T Consensus        98 ~l~~~g~~v~l~v~R~  113 (117)
T 2byg_A           98 ILKNTSEVVYLKVGKP  113 (117)
T ss_dssp             HHHTCCSEEEEEEEEE
T ss_pred             HHHcCCCeEEEEEEeC
Confidence            8886667889999885

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.29  E-value=2.6e-06  Score=66.89  Aligned_cols=81  Identities=12%  Similarity=0.201  Sum_probs=61.4

Q ss_pred             eEEEEec---CCceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           86 EYEVEIE---QPYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        86 ~~~v~l~---KPlGl~~~~~~------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      ..+|+|.   ++||+.+..+.      +.+++|..|.+++.|+++|.|++||+|+++-.   ..+ ....+.++...|+.
T Consensus        16 ~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng---~~v-~~~~~~~~~~~l~~   91 (108)
T 2d92_A           16 VKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNE---YCL-DNTSLAEAVEILKA   91 (108)
T ss_dssp             CEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESS---CBC-TTCCHHHHHHHHHH
T ss_pred             eEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHh
Confidence            3556654   47999997653      45899999999999999999999999999863   222 12345577888887


Q ss_pred             c-CCceEEEEeeccC
Q 022783          157 R-VGPLLMKMQKRYG  170 (292)
Q Consensus       157 r-~g~v~l~l~r~~~  170 (292)
                      . .+.|.|++.|+..
T Consensus        92 ~~~~~v~l~v~R~~~  106 (108)
T 2d92_A           92 VPPGLVHLGICSGPS  106 (108)
T ss_dssp             SCSEEEEEEEECCCC
T ss_pred             CCCCeEEEEEEcCCC
Confidence            4 5689999999753

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.29  E-value=6.4e-06  Score=65.25  Aligned_cols=83  Identities=23%  Similarity=0.371  Sum_probs=62.5

Q ss_pred             ceEEEEecC----CceeEEeeeCC-----------CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhh
Q 022783           85 EEYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~~-----------G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~  149 (292)
                      ..++|+|.|    +||+.+..+.+           .+++|..|.+++.|+++|.|++||+|+.+..   ..+-. ..+-+
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng---~~v~~-~~~~~   90 (117)
T 2ehr_A           15 PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSG---VDLQN-ASHSE   90 (117)
T ss_dssp             CCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESS---CBCTT-CCHHH
T ss_pred             CCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECC---EECCC-CCHHH
Confidence            446777765    58888866542           5999999999999999999999999999763   22211 22446


Q ss_pred             HHHHhhccCCceEEEEeeccCC
Q 022783          150 TMYTIRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       150 ~~~ai~~r~g~v~l~l~r~~~~  171 (292)
                      ++..|+....++.|++.|.-..
T Consensus        91 ~~~~~~~~g~~v~l~v~r~~~~  112 (117)
T 2ehr_A           91 AVEAIKNAGNPVVFIVQSLSST  112 (117)
T ss_dssp             HHHHHHTSCSSEEEEECCBSCC
T ss_pred             HHHHHHcCCCeEEEEEEECCCC
Confidence            7778887677899999887654

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.29  E-value=3.6e-06  Score=64.80  Aligned_cols=81  Identities=23%  Similarity=0.415  Sum_probs=60.1

Q ss_pred             ceEEEEecC---CceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           85 EEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      ...+|+|.|   ++|+.+..+.       +.+++|..|.+++.|+++|.|++||+|+++-.   ..+ ......++...+
T Consensus         7 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng---~~v-~~~~~~~~~~~~   82 (101)
T 2jik_A            7 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG---QDL-KNLLHQDAVDLF   82 (101)
T ss_dssp             EEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETT---EEC-SSCCHHHHHHHH
T ss_pred             ccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHH
Confidence            456777765   7899998763       35999999999999999999999999999763   212 111234566677


Q ss_pred             hccCCceEEEEeecc
Q 022783          155 RQRVGPLLMKMQKRY  169 (292)
Q Consensus       155 ~~r~g~v~l~l~r~~  169 (292)
                      +.....+.|++.|..
T Consensus        83 ~~~g~~v~l~v~R~~   97 (101)
T 2jik_A           83 RNAGYAVSLRVQHRL   97 (101)
T ss_dssp             HTCCSEEEEEEEEES
T ss_pred             HhCCCeEEEEEEeCC
Confidence            655567899998853

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.29  E-value=2.4e-06  Score=75.03  Aligned_cols=65  Identities=15%  Similarity=0.090  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHc----CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLG----SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALe----ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ..+.|..++..|+|++|+..|++||+    ...+......+|+|+|.+|.++|++++|++.+++|+++-
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~  226 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            45999999999999999999999994    212222446689999999999999999999999998863

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.29  E-value=2.3e-06  Score=68.77  Aligned_cols=69  Identities=14%  Similarity=0.095  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHhCccChh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC-YSKLNQV--KAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc-yakLgq~--eeALe~LekAIelG~~Df~  287 (292)
                      ..++..|..++..|+|++|+..|+++++++|++   ..+|+++|.+ |..+|++  ++|+..+++|+++...+..
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~  116 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT  116 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHH
Confidence            445699999999999999999999999999974   4579999999 8899999  9999999999999876543

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.29  E-value=3.7e-06  Score=65.78  Aligned_cols=80  Identities=25%  Similarity=0.461  Sum_probs=61.1

Q ss_pred             ceEEEEecC---CceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~-----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +.++|+|.|   ++|+.+..+.     +.+++|..|.+++.|+++|.|++||+|+.+..   ..+ .....-++...++.
T Consensus         8 ~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng---~~v-~~~~~~~~~~~~~~   83 (110)
T 1um1_A            8 YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNG---SSL-LGLGYLRAVDLIRH   83 (110)
T ss_dssp             CEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESS---CBC-SSCCHHHHHHHHHT
T ss_pred             cEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHc
Confidence            668888865   5999997753     34899999999999999999999999999763   222 11234456667776


Q ss_pred             cCCceEEEEeec
Q 022783          157 RVGPLLMKMQKR  168 (292)
Q Consensus       157 r~g~v~l~l~r~  168 (292)
                      ...++.|++.|.
T Consensus        84 ~~~~v~l~v~R~   95 (110)
T 1um1_A           84 GGKKMRFLVAKS   95 (110)
T ss_dssp             CCSEEEEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            667889999984

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.29  E-value=1.6e-06  Score=68.45  Aligned_cols=85  Identities=19%  Similarity=0.358  Sum_probs=64.3

Q ss_pred             ceEEEEec---CCceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           85 EEYEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        85 ~~~~v~l~---KPlGl~~~~~~~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      +.++|+|.   .+||+.+..+.+   ++++|..|.+++.|+++|.|++||+|+++..   ..+ ....+.+++..|+...
T Consensus        17 ~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng---~~v-~~~~~~~~~~~l~~~~   92 (116)
T 2dm8_A           17 QEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNG---VDL-RNSSHEEAITALRQTP   92 (116)
T ss_dssp             SCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETT---EEC-SSSCHHHHHHHHHTCC
T ss_pred             CEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhCC
Confidence            45777775   478999987655   6999999999999999999999999999763   222 1112456677777666


Q ss_pred             CceEEEEeeccCCcc
Q 022783          159 GPLLMKMQKRYGKME  173 (292)
Q Consensus       159 g~v~l~l~r~~~~~~  173 (292)
                      .+|.|++.|.-..+.
T Consensus        93 ~~v~l~v~R~~~~~~  107 (116)
T 2dm8_A           93 QKVRLVVYRDEAHYR  107 (116)
T ss_dssp             SEEEEEEECCSSCCC
T ss_pred             CeEEEEEEeCCcccc
Confidence            889999998665543

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.28  E-value=9.5e-07  Score=69.95  Aligned_cols=83  Identities=14%  Similarity=0.268  Sum_probs=63.9

Q ss_pred             cceEEEEecCC----ceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           84 YEEYEVEIEQP----YGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        84 ~~~~~v~l~KP----lGl~~~~~~-----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      ...+.|+|.|+    ||+.+..+.     +.+++|..|.++|.|+++|.|++||+|+++..   ..+.....+.++..+|
T Consensus        19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing---~~v~~~~~~~~~~~~l   95 (117)
T 2o2t_A           19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING---QALDQTITHQQAISIL   95 (117)
T ss_dssp             SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETT---EECCTTSCHHHHHHHH
T ss_pred             CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EECCCCCCHHHHHHHH
Confidence            35688888886    788887653     34899999999999999999999999999863   2222122556677788


Q ss_pred             hccCCceEEEEeecc
Q 022783          155 RQRVGPLLMKMQKRY  169 (292)
Q Consensus       155 ~~r~g~v~l~l~r~~  169 (292)
                      +.....|.|.+.|..
T Consensus        96 ~~~~~~v~l~v~R~~  110 (117)
T 2o2t_A           96 QKAKDTVQLVIARGS  110 (117)
T ss_dssp             HHCCSEEEEEEESSC
T ss_pred             HcCCCEEEEEEEeCC
Confidence            776678899999864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.28  E-value=4.6e-06  Score=69.57  Aligned_cols=67  Identities=10%  Similarity=-0.054  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+.+|..+++.|+|++|+..|+++++.+|+.   ..+++.++.+|..+|++++|+..+++++++..++.
T Consensus       177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          177 VALEMADLLYKEREYVPARQYYDLFAQGGGQN---ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence            34577777777777777777777777777753   34577777777777777777777777777765543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.28  E-value=3.5e-06  Score=81.71  Aligned_cols=64  Identities=14%  Similarity=0.018  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHc-----CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLG-----SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALe-----ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +-++|.+|..+|+|++|+..|+++|+     +-|+.++.+..++|+|..|..+|++++|+..+++|+++
T Consensus       343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            34999999999999999999999995     55666788899999999999999999999999999876

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=1.9e-06  Score=66.73  Aligned_cols=82  Identities=22%  Similarity=0.356  Sum_probs=60.8

Q ss_pred             ccceEEEEecC---CceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~  155 (292)
                      ..+.++|+|.|   ++|+.+..+.    +++++|..|.+++.|+++|.|++||+|+++-.   ..+-. ..+.+++..++
T Consensus         9 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng---~~v~~-~~~~~~~~~~~   84 (104)
T 2djt_A            9 ASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHING---ESTQG-LTHAQAVERIR   84 (104)
T ss_dssp             CCCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETT---EECTT-CCHHHHHHHHH
T ss_pred             CCceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EECCC-CCHHHHHHHHH
Confidence            34668888864   6788887642    56899999999999999999999999999763   22211 12455666777


Q ss_pred             ccCCceEEEEeec
Q 022783          156 QRVGPLLMKMQKR  168 (292)
Q Consensus       156 ~r~g~v~l~l~r~  168 (292)
                      ....+|.|++.|.
T Consensus        85 ~~g~~v~l~v~R~   97 (104)
T 2djt_A           85 AGGPQLHLVIRRP   97 (104)
T ss_dssp             HTCSEEEEEECCC
T ss_pred             cCCCeEEEEEEEC
Confidence            6556789999885

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.27  E-value=2.4e-06  Score=69.34  Aligned_cols=82  Identities=22%  Similarity=0.417  Sum_probs=61.4

Q ss_pred             ceEEEEec-C---CceeEEeeeCC------CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           85 EEYEVEIE-Q---PYGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        85 ~~~~v~l~-K---PlGl~~~~~~~------G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      ..++|+|. +   +||+.+..+.+      .++||..|.++|.|+++|.|++||+|+++-.   ..+ ....+.+++..|
T Consensus        25 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng---~~v-~~~~~~~~~~~l  100 (127)
T 1wg6_A           25 LTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNG---ETL-LGKSNHEAMETL  100 (127)
T ss_dssp             EEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETT---EES-TTSCHHHHHHHH
T ss_pred             eEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHH
Confidence            45777776 3   69999987642      4899999999999999999999999999763   211 112344677777


Q ss_pred             hcc-------CCceEEEEeeccC
Q 022783          155 RQR-------VGPLLMKMQKRYG  170 (292)
Q Consensus       155 ~~r-------~g~v~l~l~r~~~  170 (292)
                      +..       .++|.|++.|..-
T Consensus       101 ~~~~~~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A          101 RRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHHHHHHHHHTCEEEEEEEECSC
T ss_pred             HHhhccccCCCCEEEEEEEeCCC
Confidence            754       6789999998643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.26  E-value=1.8e-06  Score=76.95  Aligned_cols=98  Identities=11%  Similarity=0.017  Sum_probs=72.6

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc---h
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---S  251 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~-------~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d---~  251 (292)
                      ..++.|.|.+... .+.+++  .|.+...+...       ..-..+.|..+.++|+|++|+..|++++++.|+...   .
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC  194 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence            3456666666655 555554  55554444332       123459999999999999999999999987664322   2


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          252 SVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       252 a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ..++++++.||..+|++++|+.++++|+ +..
T Consensus       195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p  225 (307)
T 2ifu_A          195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIP  225 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence            4579999999999999999999999999 643

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.26  E-value=4e-06  Score=63.47  Aligned_cols=80  Identities=26%  Similarity=0.468  Sum_probs=59.0

Q ss_pred             ceEEEEecC---CceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           85 EEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      +.++|+|.|   ++|+.+..+.       +.+++|..|.+++.|+++|.|++||+|+++...   .+ .......+...+
T Consensus         3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v-~~~~~~~~~~~~   78 (94)
T 2fe5_A            3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT---NL-QDVRHEEAVASL   78 (94)
T ss_dssp             CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCBHHHHHHHH
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHH
Confidence            346677754   6999997642       348999999999999999999999999997631   11 111344566777


Q ss_pred             hccCCceEEEEeec
Q 022783          155 RQRVGPLLMKMQKR  168 (292)
Q Consensus       155 ~~r~g~v~l~l~r~  168 (292)
                      +...+++.|++.|.
T Consensus        79 ~~~~~~v~l~v~R~   92 (94)
T 2fe5_A           79 KNTSDMVYLKVAKP   92 (94)
T ss_dssp             HTCCSEEEEEEECC
T ss_pred             HcCCCeEEEEEEcC
Confidence            76667889999874

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.26  E-value=3.8e-06  Score=64.88  Aligned_cols=81  Identities=21%  Similarity=0.328  Sum_probs=61.6

Q ss_pred             eEEEEecCC---ceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           86 EYEVEIEQP---YGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        86 ~~~v~l~KP---lGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      ...|+|.|.   +|+.+.... ..+++|..|.+++.|+++| |++||+|+.+..   ..+-.. .+.++...|+....++
T Consensus         7 ~r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing---~~v~~~-~~~~~~~~l~~~g~~v   81 (102)
T 2d90_A            7 GRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNG---KSVEAL-DHDGVVEMIRKGGDQT   81 (102)
T ss_dssp             SEEEEEECCSSSSSCEEEECSSSSSEEEECCCTTSTTTTTT-CCTTCEEEEESS---CBCTTS-CHHHHHHHHHHSTTEE
T ss_pred             CEEEEEeeCCCCccEEEEeecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECC---EECCCC-CHHHHHHHHHcCCCEE
Confidence            367777775   899998754 4599999999999999999 999999999763   222111 2456677777666789


Q ss_pred             EEEEeeccCC
Q 022783          162 LMKMQKRYGK  171 (292)
Q Consensus       162 ~l~l~r~~~~  171 (292)
                      .|++.|+-+.
T Consensus        82 ~l~v~r~~~~   91 (102)
T 2d90_A           82 TLLVLDKEAE   91 (102)
T ss_dssp             EEEECSTTCC
T ss_pred             EEEEEECCCc
Confidence            9999887665

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.26  E-value=1.8e-06  Score=67.07  Aligned_cols=83  Identities=18%  Similarity=0.393  Sum_probs=63.1

Q ss_pred             ccceEEEEecC---CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      .++.++|+|.|   ++|+.+..+.  +.+++|..|.+++.|+++|.|++||+|+++-.   ..+ ....+.+++..|+..
T Consensus         7 ~~~~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing---~~v-~~~~~~~~~~~l~~~   82 (103)
T 1uep_A            7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDG---IPV-AGKTHRYVIDLMHHA   82 (103)
T ss_dssp             SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETT---EEC-TTSCHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhC
Confidence            45667778876   5888887653  45899999999999999999999999999763   222 112355677778765


Q ss_pred             --CCceEEEEeecc
Q 022783          158 --VGPLLMKMQKRY  169 (292)
Q Consensus       158 --~g~v~l~l~r~~  169 (292)
                        ...|.|++.|..
T Consensus        83 ~~g~~v~l~v~R~~   96 (103)
T 1uep_A           83 ARNGQVNLTVRRKV   96 (103)
T ss_dssp             HHHTEEEEEEEEEC
T ss_pred             CCCCcEEEEEEeCC
Confidence              578999999864

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.26  E-value=3.1e-06  Score=76.71  Aligned_cols=97  Identities=12%  Similarity=0.041  Sum_probs=73.4

Q ss_pred             HHHHhhccccchhhHHHHHHH--hhHHHHHhhHh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----CCCCc
Q 022783          183 IIRAERNSGVISNRVREIQMQ--NYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLG-----SKPTP  248 (292)
Q Consensus       183 ~~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~-------~~~~~n~G~~L~k~gdYeeAIe~fekALe-----ldP~~  248 (292)
                      ...++.|.|.+...+++..++  .|.++..+..+       .....++|..+...|+|++|+..|++|++     .+|. 
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-  259 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-  259 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-
Confidence            355666777777766666665  34333332211       12345999999999999999999999998     6664 


Q ss_pred             cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          249 EESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       249 ~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                        ...+++|+|.+|.++|++++|+..+++|+++-
T Consensus       260 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  291 (378)
T 3q15_A          260 --LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI  291 (378)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence              36789999999999999999999999999874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.26  E-value=3.2e-06  Score=71.70  Aligned_cols=66  Identities=18%  Similarity=0.107  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeld-----P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .....+|..++..|+|++|+..|++++++.     ++......+++++|.+|..+|++++|+..+++|+++
T Consensus        70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  140 (311)
T 3nf1_A           70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  140 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            344699999999999999999999999763     333355678999999999999999999999999987

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.26  E-value=2e-06  Score=63.96  Aligned_cols=78  Identities=23%  Similarity=0.366  Sum_probs=56.0

Q ss_pred             eEEEEecC--CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           86 EYEVEIEQ--PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        86 ~~~v~l~K--PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      .+.|+|.+  |+|+.+..+.  +.+++|..|.|++.|+++| |++||+|+.+..   ..+-.. .+.++...++...+++
T Consensus         2 ~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng---~~v~~~-~~~~~~~~~~~~~~~v   76 (85)
T 1rgw_A            2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDG---VNTDTM-THLEAQNKIKSASYNL   76 (85)
T ss_dssp             EEEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETT---EECTTC-CHHHHHHHHTTCSSCE
T ss_pred             cEEEEEeCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECC---EECCCc-CHHHHHHHHHcCCCeE
Confidence            35666655  5777776543  3479999999999999998 999999999763   222111 2345666777666779


Q ss_pred             EEEEeec
Q 022783          162 LMKMQKR  168 (292)
Q Consensus       162 ~l~l~r~  168 (292)
                      .|++.|.
T Consensus        77 ~l~v~R~   83 (85)
T 1rgw_A           77 SLTLQKS   83 (85)
T ss_dssp             EEEEESC
T ss_pred             EEEEEeC
Confidence            9999874

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.26  E-value=2.6e-06  Score=68.66  Aligned_cols=85  Identities=18%  Similarity=0.283  Sum_probs=64.1

Q ss_pred             ceEEEEecC----CceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh
Q 022783           85 EEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~~-----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~  155 (292)
                      +..+|+|.|    +||+.+..+.+     .++||..|.+++.|+++|.|++||+|+.+.   |..+.....+.+++..|+
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~in---g~~v~~~~~~~~~~~~l~  101 (128)
T 2db5_A           25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAIN---HTPLDQNISHQQAIALLQ  101 (128)
T ss_dssp             EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEES---SCBCSTTSCHHHHHHHHH
T ss_pred             ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEECCCCCCHHHHHHHHH
Confidence            456666665    57888865533     289999999999999999999999999976   333321335667788888


Q ss_pred             ccCCceEEEEeeccCCc
Q 022783          156 QRVGPLLMKMQKRYGKM  172 (292)
Q Consensus       156 ~r~g~v~l~l~r~~~~~  172 (292)
                      .....|.|++.|.....
T Consensus       102 ~~~~~v~l~v~r~~~~~  118 (128)
T 2db5_A          102 QTTGSLRLIVAREPVHT  118 (128)
T ss_dssp             HCCSEEEEEEEECCCSS
T ss_pred             cCCCeEEEEEEcCCCCC
Confidence            76678899999976543

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=1.4e-06  Score=66.61  Aligned_cols=77  Identities=22%  Similarity=0.388  Sum_probs=60.7

Q ss_pred             EEEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      ..|+|.|    +||+.+.. .+++++|..|.|++.|+++|.+++||+|+++.   |..+  ...+.++...|+...+++.
T Consensus         8 r~v~l~k~~~~~lG~~i~~-~~~~v~V~~V~~~spA~~ag~L~~GD~I~~in---g~~v--~~~~~~~~~~l~~~~~~v~   81 (91)
T 2e7k_A            8 RMVGIRKTAGEHLGVTFRV-EGGELVIARILHGGMVAQQGLLHVGDIIKEVN---GQPV--GSDPRALQELLRNASGSVI   81 (91)
T ss_dssp             CBCCBCCCTTCCCCEEEEE-SSSSEEEEEECSSSHHHHHCCCCTTCEEEEET---TEEC--TTCHHHHHHHHHTCCSSBC
T ss_pred             EEEEEEECCCCcEeEEEEe-cCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEEC--CCCHHHHHHHHHcCCCeEE
Confidence            3466654    79999987 46799999999999999998899999999986   3334  2455667778887678899


Q ss_pred             EEEeecc
Q 022783          163 MKMQKRY  169 (292)
Q Consensus       163 l~l~r~~  169 (292)
                      |++.|.+
T Consensus        82 l~v~~~~   88 (91)
T 2e7k_A           82 LKILSGP   88 (91)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9988753

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.25  E-value=2.1e-06  Score=68.86  Aligned_cols=80  Identities=15%  Similarity=0.335  Sum_probs=62.0

Q ss_pred             ceEEEEecC---CceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~-----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +..+|+|.|   ++|+.+..+.     +.+++|..|.|+|.|+++|.|++||+|+++..   ..+- .....++...|+.
T Consensus        25 ~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng---~~v~-~~~~~~~~~~l~~  100 (117)
T 2fne_A           25 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNG---QSLE-GVTHEEAVAILKR  100 (117)
T ss_dssp             EEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETT---EECT-TCCHHHHHHHHHH
T ss_pred             ccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC---EECC-CCCHHHHHHHHHc
Confidence            456788865   6899997653     34899999999999999999999999999863   2121 1245677788887


Q ss_pred             cCCceEEEEeec
Q 022783          157 RVGPLLMKMQKR  168 (292)
Q Consensus       157 r~g~v~l~l~r~  168 (292)
                      ..+.|.|++.|.
T Consensus       101 ~~~~v~l~v~R~  112 (117)
T 2fne_A          101 TKGTVTLMVLSS  112 (117)
T ss_dssp             CCSSEEEEEEEC
T ss_pred             CCCeEEEEEEeC
Confidence            778899999885

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.25  E-value=3.5e-06  Score=67.64  Aligned_cols=83  Identities=19%  Similarity=0.315  Sum_probs=62.2

Q ss_pred             cceEEEEecC---CceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           84 YEEYEVEIEQ---PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        84 ~~~~~v~l~K---PlGl~~~~~~~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      .+.++|+|.|   +||+.+..+.+   .+++|..|.|++.|+++|.|++||+|+++..   ..+-. ...-+++..++..
T Consensus        24 ~~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing---~~v~~-~~~~~~~~~~~~~   99 (124)
T 2daz_A           24 GELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINN---QILYG-RSHQNASAIIKTA   99 (124)
T ss_dssp             SEEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESS---CBCTT-SCHHHHHHHHHHS
T ss_pred             CceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EECCC-CCHHHHHHHHHcC
Confidence            3557888876   78999987643   5999999999999999999999999999763   22211 1233456677766


Q ss_pred             CCceEEEEeeccC
Q 022783          158 VGPLLMKMQKRYG  170 (292)
Q Consensus       158 ~g~v~l~l~r~~~  170 (292)
                      .++|.|++.|.-.
T Consensus       100 ~~~v~l~v~R~~~  112 (124)
T 2daz_A          100 PSKVKLVFIRNED  112 (124)
T ss_dssp             CSEEEEEEEECTT
T ss_pred             CCeEEEEEEeCCC
Confidence            6789999998543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.24  E-value=3.6e-06  Score=77.02  Aligned_cols=63  Identities=14%  Similarity=-0.031  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCC------ccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPT------PEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~------~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      -.+|.+++..|+|++|++.|++|+++.+.      ......+|+|+|.+|..+|++++|+..+++|+++
T Consensus        55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i  123 (472)
T 4g1t_A           55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV  123 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            37899999999999999999999976221      1134678999999999999999999999999886

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.24  E-value=8.3e-06  Score=69.62  Aligned_cols=90  Identities=12%  Similarity=0.069  Sum_probs=69.7

Q ss_pred             hhhHHHHHHH--hhHHHHHhhHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHH
Q 022783          194 SNRVREIQMQ--NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKA  270 (292)
Q Consensus       194 ~~~l~eiqea--~Y~kkk~lk~~-~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~ee  270 (292)
                      ....+..+++  .|.+.....+. ....+..|..+++.|+|++|+..|+++++++|+.   ..+|+++|.+|..+|++++
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~  224 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---AQLWNKLGATLANGNRPQE  224 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHH
Confidence            3344444443  33333333332 2445699999999999999999999999999973   4679999999999999999


Q ss_pred             HHHHHHHHHHhCccCh
Q 022783          271 GLSALEDALLAGYEDF  286 (292)
Q Consensus       271 ALe~LekAIelG~~Df  286 (292)
                      |+..+++|+++..++.
T Consensus       225 A~~~~~~a~~~~~~~~  240 (327)
T 3cv0_A          225 ALDAYNRALDINPGYV  240 (327)
T ss_dssp             HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHcCCCCH
Confidence            9999999999976643

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.23  E-value=4.4e-06  Score=64.97  Aligned_cols=86  Identities=19%  Similarity=0.329  Sum_probs=60.8

Q ss_pred             cccceEEEEec--CCceeEEeee-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           82 EKYEEYEVEIE--QPYGLKFAKG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        82 ~~~~~~~v~l~--KPlGl~~~~~-----~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      .+.+.++|+|+  .++|+.+..+     .+.+++|..|.+++.|+++|.|++||+|+.+...   .+ .....-++...+
T Consensus         8 ~~~~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~---~v-~~~~~~~~~~~~   83 (106)
T 3axa_A            8 KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR---SL-VGLSQERAAELM   83 (106)
T ss_dssp             --CCEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHH
T ss_pred             CCceEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHH
Confidence            34466777773  3577888653     3458999999999999999999999999997632   11 112344566677


Q ss_pred             hccCCceEEEEeeccCC
Q 022783          155 RQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       155 ~~r~g~v~l~l~r~~~~  171 (292)
                      +....++.|++.|.-..
T Consensus        84 ~~~g~~v~l~v~R~~~~  100 (106)
T 3axa_A           84 TRTSSVVTLEVAKQGAI  100 (106)
T ss_dssp             HTCCSEEEEEEECCCSS
T ss_pred             HcCCCeEEEEEEeCCcc
Confidence            76666889999986443

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.23  E-value=2.4e-06  Score=67.23  Aligned_cols=84  Identities=20%  Similarity=0.377  Sum_probs=62.8

Q ss_pred             cceEEEEecC---CceeEEee---e-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHH
Q 022783           84 YEEYEVEIEQ---PYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (292)
Q Consensus        84 ~~~~~v~l~K---PlGl~~~~---~-----~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~  152 (292)
                      .+.++|+|.|   +||+.+..   +     .+.+++|..|.|+|.|+++|.|++||+|+++..   ..+-. ...-++..
T Consensus         3 ~~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng---~~v~~-~~~~~~~~   78 (113)
T 2g5m_B            3 MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG---TSLVG-VTQSFAAS   78 (113)
T ss_dssp             CEEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETT---EECSS-CCHHHHHH
T ss_pred             eEEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EECCC-CCHHHHHH
Confidence            4567888864   58999887   2     345999999999999999999999999999763   22211 12445666


Q ss_pred             HhhccCCceEEEEeeccCC
Q 022783          153 TIRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       153 ai~~r~g~v~l~l~r~~~~  171 (292)
                      +++....++.|.+.|.--.
T Consensus        79 ~~~~~g~~v~l~v~R~~~~   97 (113)
T 2g5m_B           79 VLRNTKGRVRFMIGRERPG   97 (113)
T ss_dssp             HHHHSCSSCEEEEEECCCC
T ss_pred             HHhcCCCeEEEEEEeCCCC
Confidence            7776678899999986543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.23  E-value=3.2e-06  Score=79.58  Aligned_cols=67  Identities=12%  Similarity=0.095  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      .+..+|..+.+.|++++|++.|+++++++|++   ..+|++++.+|..+|++++|++.+++++++..++-
T Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTND---ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence            44689999999999999999999999999863   45799999999999999999999999999987653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.22  E-value=2.4e-06  Score=77.25  Aligned_cols=93  Identities=11%  Similarity=0.087  Sum_probs=71.3

Q ss_pred             HhhccccchhhHHHHHHHhhHHHHHhhHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          186 AERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea~Y~kkk~lk~~-~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      .++..|.+..++..++     +.....+. ...++.+|..++..|+|++|+..|+++++++|+.   ..+|+++|.+|..
T Consensus        35 ~~~~~g~~~~A~~~~~-----~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~  106 (450)
T 2y4t_A           35 KLLAAGQLADALSQFH-----AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF---TAARLQRGHLLLK  106 (450)
T ss_dssp             HHHHTTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHH-----HHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH
Confidence            3445555544433333     33332222 3445699999999999999999999999999974   5679999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCccCh
Q 022783          265 LNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~~Df  286 (292)
                      +|++++|+..+++++++..++.
T Consensus       107 ~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A          107 QGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             TTCHHHHHHHHHHHHTSCCCHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999999876543

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.22  E-value=4.1e-06  Score=69.33  Aligned_cols=86  Identities=20%  Similarity=0.310  Sum_probs=61.8

Q ss_pred             cccccceEEEEecC-------CceeEEeeeC--------------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccC
Q 022783           80 QEEKYEEYEVEIEQ-------PYGLKFAKGR--------------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG  138 (292)
Q Consensus        80 ~~~~~~~~~v~l~K-------PlGl~~~~~~--------------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg  138 (292)
                      ..+....+.|+|.|       +||+.+..+.              +.+++|..|.|++.|+++| |++||+|+++...  
T Consensus        18 ~~~~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~--   94 (139)
T 2vz5_A           18 LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGW--   94 (139)
T ss_dssp             ----CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTE--
T ss_pred             ccCCCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE--
Confidence            33444667888888       8999986532              3699999999999999999 9999999997631  


Q ss_pred             cccccccchhhHHHHhhccCC-ceEEEEeeccC
Q 022783          139 TEIWPAAEYGRTMYTIRQRVG-PLLMKMQKRYG  170 (292)
Q Consensus       139 ~e~w~a~~~g~~~~ai~~r~g-~v~l~l~r~~~  170 (292)
                        -.......++..+|+...| +|.|++.|.-.
T Consensus        95 --~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~  125 (139)
T 2vz5_A           95 --DMTMVTHDQARKRLTKRSEEVVRLLVTRQSL  125 (139)
T ss_dssp             --ECTTCCHHHHHHHHCCTTCSEEEEEEEECC-
T ss_pred             --EcCCCCHHHHHHHHHhCCCCEEEEEEEECCE
Confidence              1111135677788887654 58999998543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.22  E-value=2.9e-06  Score=68.28  Aligned_cols=99  Identities=11%  Similarity=0.044  Sum_probs=70.8

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHh------hH--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---ccc
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQ------KE--RREQDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEE  250 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~l------k~--~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~---~~d  250 (292)
                      ..++.+.|.+...+.+.+++  .|.+....      ..  ......+.|..+...|+|++|+..|++++++.+.   ...
T Consensus        66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  145 (203)
T 3gw4_A           66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA  145 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence            45556666666665555554  33333332      11  1233469999999999999999999999965332   122


Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          251 SSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       251 ~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ...+++|+|.+|..+|++++|+..+++|+++.
T Consensus       146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            35568999999999999999999999998873

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.21  E-value=8e-06  Score=63.88  Aligned_cols=82  Identities=24%  Similarity=0.415  Sum_probs=60.6

Q ss_pred             cccceEEEEecC---CceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhH
Q 022783           82 EKYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (292)
Q Consensus        82 ~~~~~~~v~l~K---PlGl~~~~~--------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~  150 (292)
                      ...+.+.|++.|   .||+.+..+        .+.+++|..|.+++.|+++| |++||+|+.+..   ..+-....+ +.
T Consensus        12 ~~~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing---~~v~~~~~~-~~   86 (110)
T 1x5q_A           12 IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNG---VALQGAEHH-EA   86 (110)
T ss_dssp             CCCEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETT---EECTTCCHH-HH
T ss_pred             CCcceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECC---EECCCcCHH-HH
Confidence            345778899877   688998754        34699999999999999999 999999999873   222222222 34


Q ss_pred             HHHhhccCCceEEEEeec
Q 022783          151 MYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus       151 ~~ai~~r~g~v~l~l~r~  168 (292)
                      ...++....+|.|++.|.
T Consensus        87 ~~~~~~~g~~v~l~v~R~  104 (110)
T 1x5q_A           87 VEALRGAGTAVQMRVWRE  104 (110)
T ss_dssp             HHHHHSCCSEEEEEEEEC
T ss_pred             HHHhhCCCCeEEEEEEEC
Confidence            445555566889999985

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.21  E-value=3.4e-06  Score=64.48  Aligned_cols=78  Identities=19%  Similarity=0.393  Sum_probs=58.5

Q ss_pred             EEEEecC----CceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           87 YEVEIEQ----PYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~--------G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      .+|+|.|    +||+.+..+.+        .+++|..|.+++.|+++|.|++||+|+++..   ..+-.. ...++..++
T Consensus         7 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing---~~v~~~-~~~~~~~~l   82 (98)
T 1ihj_A            7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG---KDVRNS-TEQAVIDLI   82 (98)
T ss_dssp             EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETT---EECTTC-CHHHHHHHH
T ss_pred             EEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EECCCC-CHHHHHHHH
Confidence            5688888    89999976532        2899999999999999999999999999763   222111 124556677


Q ss_pred             hccCCceEEEEeec
Q 022783          155 RQRVGPLLMKMQKR  168 (292)
Q Consensus       155 ~~r~g~v~l~l~r~  168 (292)
                      +....++.|++.|.
T Consensus        83 ~~~g~~v~l~v~R~   96 (98)
T 1ihj_A           83 KEADFKIELEIQTF   96 (98)
T ss_dssp             HHSCSEEEEEEEEC
T ss_pred             hcCCCeEEEEEEeC
Confidence            76566889999884

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=6.4e-06  Score=65.66  Aligned_cols=86  Identities=22%  Similarity=0.361  Sum_probs=63.9

Q ss_pred             ccccceEEEEecC---CceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhH
Q 022783           81 EEKYEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (292)
Q Consensus        81 ~~~~~~~~v~l~K---PlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~  150 (292)
                      .......+|+|.|   +||+.+..+.       +.+++|..|.+++.|+++|.|++||+|+.+-.   ..+-.. .+-++
T Consensus        13 ~~~~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng---~~v~~~-~~~~~   88 (120)
T 2eno_A           13 DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG---QDLKNL-LHQDA   88 (120)
T ss_dssp             CEEEEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETT---EECCSC-CHHHH
T ss_pred             CCCCceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECC---EECCCC-CHHHH
Confidence            3445667788876   5899998753       45999999999999999999999999999863   222111 23366


Q ss_pred             HHHhhccCCceEEEEeeccC
Q 022783          151 MYTIRQRVGPLLMKMQKRYG  170 (292)
Q Consensus       151 ~~ai~~r~g~v~l~l~r~~~  170 (292)
                      ...++.....|.|++.|...
T Consensus        89 ~~~~~~~g~~v~l~v~R~~~  108 (120)
T 2eno_A           89 VDLFRNAGYAVSLRVQHRLQ  108 (120)
T ss_dssp             HHHHHHHCSEEEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEeCCc
Confidence            67777656678999988654

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.21  E-value=8.5e-06  Score=62.01  Aligned_cols=79  Identities=22%  Similarity=0.411  Sum_probs=57.3

Q ss_pred             ceEEEEecC--CceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHH
Q 022783           85 EEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (292)
Q Consensus        85 ~~~~v~l~K--PlGl~~~~~~----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~  152 (292)
                      .+++|++.|  +||+.+..+.          +.+++|..|.|++.|++ | |++||+|+.+..   ..+ .....-++..
T Consensus         3 ~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng---~~v-~~~~~~~~~~   76 (95)
T 1mfg_A            3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANG---YSF-INIEHGQAVS   76 (95)
T ss_dssp             EEEEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETT---EEC-TTCBHHHHHH
T ss_pred             eEEEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECC---EEc-CCCCHHHHHH
Confidence            457777776  5888887643          34899999999999999 7 999999999763   212 1112334556


Q ss_pred             HhhccCCceEEEEeecc
Q 022783          153 TIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       153 ai~~r~g~v~l~l~r~~  169 (292)
                      .++....++.|++.|..
T Consensus        77 ~~~~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           77 LLKTFQNTVELIIVREV   93 (95)
T ss_dssp             HHHHCCSEEEEEEEEEC
T ss_pred             HhhcCCCeEEEEEEeCC
Confidence            66655677899999864

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.20  E-value=3.5e-06  Score=72.38  Aligned_cols=81  Identities=21%  Similarity=0.432  Sum_probs=63.0

Q ss_pred             ccceEEEEecC---CceeEEee---e-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHH
Q 022783           83 KYEEYEVEIEQ---PYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~---~-----~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~  151 (292)
                      ..+.++|+|.|   +||+.+..   +     .++++||..|.+||.|+++|.|++||+|+.+..   ..| ......++.
T Consensus        78 ~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG---~~v-~~~~~~~~~  153 (170)
T 3egg_C           78 RLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG---TSL-VGVTQSFAA  153 (170)
T ss_dssp             TSEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETT---EEC-TTBCHHHHH
T ss_pred             CceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHH
Confidence            45678888875   89999987   2     235899999999999999999999999999873   222 112334677


Q ss_pred             HHhhccCCceEEEEee
Q 022783          152 YTIRQRVGPLLMKMQK  167 (292)
Q Consensus       152 ~ai~~r~g~v~l~l~r  167 (292)
                      ..|+...+.|.|++.|
T Consensus       154 ~~l~~~g~~v~L~V~R  169 (170)
T 3egg_C          154 SVLRNTKGRVRFMIGR  169 (170)
T ss_dssp             HHHHHCCSEEEEEEEE
T ss_pred             HHHHcCCCEEEEEEEe
Confidence            7888777889999988

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.20  E-value=3.8e-06  Score=63.23  Aligned_cols=80  Identities=20%  Similarity=0.389  Sum_probs=57.3

Q ss_pred             ceEEEEecC---CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC-
Q 022783           85 EEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-  158 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~-  158 (292)
                      ++.+|+|.|   ++|+.+..+.  +.+++|..|.|+|.|+++|.+++||+|+.+..   ..+ ......++...|+... 
T Consensus         2 ~~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing---~~v-~~~~~~~~~~~l~~~~~   77 (90)
T 2q9v_A            2 MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDG---TPV-IGKSHQLVVQLMQQAAK   77 (90)
T ss_dssp             EEEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETT---EEC-TTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEEECCCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhCCC
Confidence            345666654   5788887653  23699999999999999999999999999763   222 1123446667777553 


Q ss_pred             -CceEEEEeec
Q 022783          159 -GPLLMKMQKR  168 (292)
Q Consensus       159 -g~v~l~l~r~  168 (292)
                       ++|.|++.|.
T Consensus        78 ~~~v~l~v~R~   88 (90)
T 2q9v_A           78 QGHVNLTVRQT   88 (90)
T ss_dssp             HTEEEEEEEEC
T ss_pred             CCeEEEEEEec
Confidence             3899999874

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.20  E-value=4.2e-06  Score=66.39  Aligned_cols=86  Identities=21%  Similarity=0.374  Sum_probs=62.8

Q ss_pred             ccccceEEEEecCC---ceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           81 EEKYEEYEVEIEQP---YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        81 ~~~~~~~~v~l~KP---lGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +...+..+|+|.|+   ||+.+....+ .+++|..|.+++.|+++|.|++||+|+++..   ..+-... .-.+...++.
T Consensus        10 ~~~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng---~~v~~~~-~~~~~~~~~~   85 (119)
T 1tp5_A           10 DIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNG---VDLRNAS-HEQAAIALKN   85 (119)
T ss_dssp             CCCCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETT---EECTTCC-HHHHHHHHHT
T ss_pred             CCCCccEEEEEEECCCCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EECCCCC-HHHHHHHHHc
Confidence            34556788999875   8999987644 5999999999999999998999999999863   2221111 1234445555


Q ss_pred             cCCceEEEEeeccC
Q 022783          157 RVGPLLMKMQKRYG  170 (292)
Q Consensus       157 r~g~v~l~l~r~~~  170 (292)
                      ...++.|.+.|+..
T Consensus        86 ~~~~v~l~v~r~~~   99 (119)
T 1tp5_A           86 AGQTVTIIAQYKPE   99 (119)
T ss_dssp             SCSEEEEEEEECHH
T ss_pred             CCCeEEEEEEECCc
Confidence            56678999988654

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=6.1e-06  Score=63.62  Aligned_cols=81  Identities=20%  Similarity=0.366  Sum_probs=60.0

Q ss_pred             eEEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC
Q 022783           86 EYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (292)
Q Consensus        86 ~~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g  159 (292)
                      ..+|+|.|    +||+.+....+  .+++|..|.+++.|+++| |++||+|+.+..   ..+-... +-.++..++. ..
T Consensus        11 ~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing---~~v~~~~-~~~~~~~~~~-~~   84 (100)
T 2eeh_A           11 IHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNG---LSLESTT-MGSAVKVLTS-SS   84 (100)
T ss_dssp             ECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETT---EECSSCC-HHHHHHHHHS-CS
T ss_pred             EEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECC---EECCCCC-HHHHHHhhcC-CC
Confidence            34456643    39999987643  589999999999999999 999999999763   2222222 5667777776 68


Q ss_pred             ceEEEEeeccCCc
Q 022783          160 PLLMKMQKRYGKM  172 (292)
Q Consensus       160 ~v~l~l~r~~~~~  172 (292)
                      ++.|++.|.--..
T Consensus        85 ~v~l~v~R~g~~p   97 (100)
T 2eeh_A           85 RLHMMVRRMGSGP   97 (100)
T ss_dssp             SEEEEEEECSCCC
T ss_pred             EEEEEEEECCcCC
Confidence            8999999864433

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.19  E-value=6.9e-06  Score=62.49  Aligned_cols=80  Identities=25%  Similarity=0.448  Sum_probs=58.1

Q ss_pred             cceEEEEecCC---ceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHH
Q 022783           84 YEEYEVEIEQP---YGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (292)
Q Consensus        84 ~~~~~v~l~KP---lGl~~~~~--------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~  152 (292)
                      ++++.|++.|.   ||+.+..+        .+++++|..|.|++.|+++| |++||+|+++..   ..+-....+ ..+.
T Consensus         2 ~~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing---~~v~~~~~~-~~~~   76 (97)
T 2w4f_A            2 MEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNG---VALQGAEHH-EAVE   76 (97)
T ss_dssp             -CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETT---EECTTCCHH-HHHH
T ss_pred             ceEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECC---EECCCcCHH-HHHH
Confidence            46688888774   78888764        34699999999999999999 999999999873   223222233 2334


Q ss_pred             HhhccCCceEEEEeec
Q 022783          153 TIRQRVGPLLMKMQKR  168 (292)
Q Consensus       153 ai~~r~g~v~l~l~r~  168 (292)
                      .++....++.|++.|.
T Consensus        77 ~~~~~g~~v~l~v~R~   92 (97)
T 2w4f_A           77 ALRGAGTAVQMRVWRE   92 (97)
T ss_dssp             HHHTSCSEEEEEEECC
T ss_pred             HHhCCCCeEEEEEEeC
Confidence            5555566789999884

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.19  E-value=6.6e-06  Score=64.45  Aligned_cols=81  Identities=19%  Similarity=0.324  Sum_probs=61.3

Q ss_pred             ceEEEEecC----CceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhcc
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQR  157 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r  157 (292)
                      +.++|+|.|    ++|+.+.... .++++|..|.+++.|+++|.|++||+|+++...      +...  +.++...|+..
T Consensus         1 n~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~------~v~~~~~~~~~~~l~~~   74 (112)
T 1qau_A            1 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDR------PLVDLSYDSALEVLRGI   74 (112)
T ss_dssp             CEEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTE------ECTTSCHHHHHHHHHHS
T ss_pred             CEEEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHhC
Confidence            357888843    5999998765 349999999999999999966999999997632      2222  55667777765


Q ss_pred             C-CceEEEEeeccCC
Q 022783          158 V-GPLLMKMQKRYGK  171 (292)
Q Consensus       158 ~-g~v~l~l~r~~~~  171 (292)
                      . .++.|.+.|.-..
T Consensus        75 ~g~~v~l~v~R~g~~   89 (112)
T 1qau_A           75 ASETHVVLILRGPEG   89 (112)
T ss_dssp             CSSSEEEEEEECCTT
T ss_pred             CCCcEEEEEEeCCcc
Confidence            4 6889999986443

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.18  E-value=7.3e-06  Score=61.03  Aligned_cols=77  Identities=10%  Similarity=0.231  Sum_probs=54.5

Q ss_pred             EEEEecC---CceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CC
Q 022783           87 YEVEIEQ---PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG  159 (292)
Q Consensus        87 ~~v~l~K---PlGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g  159 (292)
                      ++|+|.|   .+|+.+..+.++  +++|..|.|++.|+++|.+++||+|+.+-..   .+ ......++..+|+..  ..
T Consensus         2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~---~v-~~~~~~~~~~~l~~~~~g~   77 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT---CV-LGHTHAQVVKIFQSIPIGA   77 (85)
T ss_dssp             EEEEEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHTSCTTC
T ss_pred             EEEEEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCCCC
Confidence            4566654   578888765443  7999999999999999999999999997632   11 111234566777754  35


Q ss_pred             ceEEEEee
Q 022783          160 PLLMKMQK  167 (292)
Q Consensus       160 ~v~l~l~r  167 (292)
                      ++.|++.|
T Consensus        78 ~v~l~v~R   85 (85)
T 2i04_A           78 SVDLELCR   85 (85)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEC
Confidence            67888765

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.17  E-value=7.1e-06  Score=65.92  Aligned_cols=82  Identities=15%  Similarity=0.351  Sum_probs=60.9

Q ss_pred             ccceEEEEecC---CceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~~-----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      ..+++.|++.+   ++|+.+....+     .+++|..|.|++.|+++|.|++||+|+++...   .+ ....+.++...|
T Consensus        28 ~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~---~v-~~~~~~~~~~~l  103 (121)
T 2kom_A           28 IGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV---DL-VGKSQEEVVSLL  103 (121)
T ss_dssp             SCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTE---EC-TTSCHHHHHHHH
T ss_pred             CCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---Ec-CCCCHHHHHHHH
Confidence            45678888876   57888877643     58999999999999999989999999998632   11 111245666777


Q ss_pred             hcc--CCceEEEEeec
Q 022783          155 RQR--VGPLLMKMQKR  168 (292)
Q Consensus       155 ~~r--~g~v~l~l~r~  168 (292)
                      +..  ..+|.|++.|.
T Consensus       104 ~~~~~g~~v~l~v~R~  119 (121)
T 2kom_A          104 RSTKMEGTVSLLVFRQ  119 (121)
T ss_dssp             HHCCSSCEEEEEEEEC
T ss_pred             hcCCCCCEEEEEEEeC
Confidence            753  45789998874

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.17  E-value=2.6e-06  Score=66.01  Aligned_cols=85  Identities=20%  Similarity=0.321  Sum_probs=62.7

Q ss_pred             cccccceEEEEecCC---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           80 QEEKYEEYEVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        80 ~~~~~~~~~v~l~KP---lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      .+...+++.|+|.|.   +|+.+..  +.+++|..|.+++.|+++| |++||+|+.+-..   .+ ....+.++...|+.
T Consensus        10 ~~~~~~~~~v~l~~~~~g~G~~~~~--~~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~---~v-~~~~~~~~~~~l~~   82 (100)
T 1whd_A           10 DPENGEKLQITIRRGKDGFGFTICC--DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNER---PV-EHWKCVELAHEIRS   82 (100)
T ss_dssp             SCCCCEEEEEEEECCSSSSSCBCCC--SSSCBCCBCCTTSHHHHHT-CCSSCEEEEETTE---EC-TTCCHHHHHHHHHH
T ss_pred             CccccceEEEEEECCCCeeeEEEeC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHc
Confidence            345667888888765   6666654  3689999999999999999 9999999998642   11 11134556677776


Q ss_pred             cCCceEEEEeeccCC
Q 022783          157 RVGPLLMKMQKRYGK  171 (292)
Q Consensus       157 r~g~v~l~l~r~~~~  171 (292)
                      ..+.|.|++.|..++
T Consensus        83 ~~~~v~l~v~R~~~~   97 (100)
T 1whd_A           83 CPSEIILLVWRVSGP   97 (100)
T ss_dssp             CSSEEEEEEEECCSS
T ss_pred             CCCeEEEEEEECCCC
Confidence            677799999987553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.16  E-value=5.5e-06  Score=70.22  Aligned_cols=65  Identities=17%  Similarity=0.195  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHhCcc
Q 022783          216 EQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-N-----QVKAGLSALEDALLAGYE  284 (292)
Q Consensus       216 ~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL-g-----q~eeALe~LekAIelG~~  284 (292)
                      ...+++|..+..    .+++++|+.+|++|+++ |.+   ..++||++.+|..- |     ++++|+..+++|++.|+.
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            444566666666    56666666666666666 321   23566666666553 2     566666666666666654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.16  E-value=4.3e-06  Score=75.72  Aligned_cols=98  Identities=8%  Similarity=0.059  Sum_probs=71.0

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhH--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC---Cccc
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKE--------RREQDLREGLQLYRTGKYEVAREKFESVLGSKP---TPEE  250 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~--------~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP---~~~d  250 (292)
                      ..++++.|.+...+++...+  .|.++...-.        ......+.|..+...|+|++|++.|++||++.+   +...
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  220 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF  220 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            44555666665555555554  3333332211        123345999999999999999999999997643   2223


Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          251 SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       251 ~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ...+++|+|.||..+|++++|+..+++|+++
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~  251 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKV  251 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999985

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.16  E-value=5.8e-06  Score=61.97  Aligned_cols=78  Identities=24%  Similarity=0.443  Sum_probs=56.5

Q ss_pred             eEEEEe--cCCceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           86 EYEVEI--EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        86 ~~~v~l--~KPlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      .++|+|  +.|+|+.+..+.+  .+++|..|.|++.|+++| |++||+|+++..   ..+-.. .+.++...++....++
T Consensus         4 ~~~v~l~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing---~~v~~~-~~~~~~~~~~~~g~~v   78 (88)
T 2uzc_A            4 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDG---INAQGM-THLEAQNKIKGCTGSL   78 (88)
T ss_dssp             EEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETT---EECTTC-CHHHHHHHHHTCCSEE
T ss_pred             EEEEEEcCCCcccEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECC---EECCCC-CHHHHHHHHHhCCCeE
Confidence            344444  4567888876543  479999999999999999 999999999763   222111 1356667777666788


Q ss_pred             EEEEeec
Q 022783          162 LMKMQKR  168 (292)
Q Consensus       162 ~l~l~r~  168 (292)
                      .|++.|.
T Consensus        79 ~l~v~R~   85 (88)
T 2uzc_A           79 NMTLQRE   85 (88)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9999884

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.16  E-value=4e-06  Score=67.91  Aligned_cols=79  Identities=23%  Similarity=0.449  Sum_probs=59.3

Q ss_pred             eEEEEecC-----CceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhh
Q 022783           86 EYEVEIEQ-----PYGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (292)
Q Consensus        86 ~~~v~l~K-----PlGl~~~~~~-----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~  149 (292)
                      ...|+|.|     +||+.+..+.           +++++|..|.++|.|+++|.+++||+|+.+..   ..+ ....+.+
T Consensus        30 ~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng---~~v-~~~~~~~  105 (128)
T 1nf3_C           30 HRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNG---IEV-SGKSLDQ  105 (128)
T ss_dssp             CEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETT---EES-TTCCHHH
T ss_pred             cEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECC---EEC-CCCCHHH
Confidence            35566665     4899887542           24899999999999999998999999999863   222 1134556


Q ss_pred             HHHHhhccCCceEEEEeec
Q 022783          150 TMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus       150 ~~~ai~~r~g~v~l~l~r~  168 (292)
                      +...|+...+.|.|++.|.
T Consensus       106 ~~~~l~~~~~~v~l~v~r~  124 (128)
T 1nf3_C          106 VTDMMIANSRNLIITVRPA  124 (128)
T ss_dssp             HHHHHHHTTTSEEEEEECC
T ss_pred             HHHHHHcCCCeEEEEEEEC
Confidence            7778876677899999874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.16  E-value=8.4e-06  Score=72.37  Aligned_cols=82  Identities=11%  Similarity=0.039  Sum_probs=60.8

Q ss_pred             hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-------------------------------cch
Q 022783          204 NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTP-------------------------------EES  251 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~-------------------------------~d~  251 (292)
                      .|.+.....+...+ .+.+|..+.+.|++++|+..|++++..+|+.                               ++.
T Consensus       139 ~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~  218 (287)
T 3qou_A          139 LLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED  218 (287)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc
Confidence            55555555554433 4588888888888888887777776555531                               122


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          252 SVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       252 a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      ..+++|+|.+|..+|++++|+..|.++++...++
T Consensus       219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          219 AALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            4679999999999999999999999999987553

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.15  E-value=3.7e-06  Score=77.60  Aligned_cols=63  Identities=16%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      +..|..+...|+|++|+..|+++++++|+.   ..+|+++|.+|..+|++++|+..++++++...+
T Consensus       314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  376 (537)
T 3fp2_A          314 YHRGQMYFILQDYKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT  376 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            455666666666666666666666655542   234555666666666666666666666555443

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.15  E-value=6.7e-06  Score=61.96  Aligned_cols=73  Identities=19%  Similarity=0.409  Sum_probs=55.4

Q ss_pred             CCceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccC
Q 022783           93 QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG  170 (292)
Q Consensus        93 KPlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~  170 (292)
                      .++|+.+..+.+ .+++|..|.+++.|+++| |++||+|+++...   .+ ......++...|+...+.+.+.+.|+-+
T Consensus        14 ~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v-~~~~~~~~~~~l~~~~~~~~~~~~~r~~   87 (91)
T 1g9o_A           14 NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGE---NV-EKETHQQVVSRIRAALNAVRLLVVDPET   87 (91)
T ss_dssp             TBCCEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTE---EC-TTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred             CcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCcEEEEEEcCCc
Confidence            478999977654 599999999999999999 9999999998742   11 1112446778888877888777666544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.15  E-value=5.1e-06  Score=70.40  Aligned_cols=95  Identities=7%  Similarity=-0.011  Sum_probs=74.6

Q ss_pred             HHhhccccchhhHH----HHHHH-hhHHHHHhhHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHH
Q 022783          185 RAERNSGVISNRVR----EIQMQ-NYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVAS  255 (292)
Q Consensus       185 ~a~rN~GvI~~~l~----eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~  255 (292)
                      .+.++.|.+... .    ..+++ .|+++..........+++|..+..    .+++++|+.+|++|++..|.. ....++
T Consensus        51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-~~~~a~  128 (212)
T 3rjv_A           51 DALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-AAVDAQ  128 (212)
T ss_dssp             HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-HHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-chHHHH
Confidence            455555555544 3    44444 445555556677889999999988    899999999999999998831 124689


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 022783          256 YNVACCYSK----LNQVKAGLSALEDALLA  281 (292)
Q Consensus       256 YN~Accyak----Lgq~eeALe~LekAIel  281 (292)
                      +|++.+|..    .+++++|+..+++|+++
T Consensus       129 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          129 MLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            999999999    89999999999999998

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.15  E-value=6.7e-06  Score=63.60  Aligned_cols=83  Identities=22%  Similarity=0.402  Sum_probs=59.6

Q ss_pred             ccccceEEEEecC--CceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchh
Q 022783           81 EEKYEEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (292)
Q Consensus        81 ~~~~~~~~v~l~K--PlGl~~~~~~----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g  148 (292)
                      +...+.++|++.|  +||+.+..+.          +.+++|..|.+++.|++ | |++||+|+.+...   .+ .....-
T Consensus         7 ~~~~~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~---~v-~~~~~~   80 (103)
T 1n7t_A            7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGY---SF-INIEHG   80 (103)
T ss_dssp             SSSCCCEEEEEECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTE---EC-SSCCHH
T ss_pred             CcccEEEEEEEccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCE---EC-CCCCHH
Confidence            3445667777765  6888887643          45899999999999999 7 9999999998631   11 111234


Q ss_pred             hHHHHhhccCCceEEEEeecc
Q 022783          149 RTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       149 ~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      ++...++....++.|++.|..
T Consensus        81 ~~~~~~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           81 QAVSLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHHHHHHCCSEEEEEEECCC
T ss_pred             HHHHHhhcCCCeEEEEEEecC
Confidence            566677755677899999864

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.15  E-value=8.7e-06  Score=74.43  Aligned_cols=70  Identities=9%  Similarity=0.027  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC-YSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc-yakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .+++|..+.+.|+|++|++.|+++|+++|++.+...++++.+.+ +..+|++++|+..+++|+++..+.+.
T Consensus       337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~  407 (472)
T 4g1t_A          337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE  407 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred             hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence            46899999999999999999999999999865555667887754 56889999999999999999877544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.14  E-value=9.8e-06  Score=79.75  Aligned_cols=98  Identities=11%  Similarity=0.021  Sum_probs=72.3

Q ss_pred             HHHhhccccchhhHHHHHHHhhHHHHHhhHh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----CCCCccchhHH
Q 022783          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLG-----SKPTPEESSVA  254 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~----~~~~~n~G~~L~k~gdYeeAIe~fekALe-----ldP~~~d~a~a  254 (292)
                      ...++..|.+..++...+..--...+.+-..    ....-++|..|..+|+|++|+..|+++|+     +-|+.++.+..
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            4456677776655444443322111211111    13334999999999999999999999995     55776778889


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          255 SYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       255 ~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ++|+|.+|..+|++++|+..+++|+++
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.14  E-value=8.5e-07  Score=72.24  Aligned_cols=28  Identities=21%  Similarity=0.236  Sum_probs=15.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKP  246 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP  246 (292)
                      +.+|..+.+.|++++|+..|+++++.+|
T Consensus        44 ~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A           44 LAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            3555555555555555555555555555

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.13  E-value=1.2e-05  Score=71.16  Aligned_cols=94  Identities=11%  Similarity=0.023  Sum_probs=69.1

Q ss_pred             cccchhhHHHHHHH--hhHHHHH-hhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783          190 SGVISNRVREIQMQ--NYMKKKE-QKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (292)
Q Consensus       190 ~GvI~~~l~eiqea--~Y~kkk~-lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL  265 (292)
                      .|++.......+++  .|.++.. +.+.. .-+++.|..+.+.|++++|++.|+++|+++|+.  ...+|++.+.++..+
T Consensus        70 ~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~  147 (308)
T 2ond_A           70 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFARRA  147 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC--THHHHHHHHHHHHHH
T ss_pred             ccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC--ccHHHHHHHHHHHHh
Confidence            45554333333443  5555555 34433 334688999999999999999999999999873  223799999999999


Q ss_pred             CCHHHHHHHHHHHHHhCccC
Q 022783          266 NQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       266 gq~eeALe~LekAIelG~~D  285 (292)
                      |++++|+..+++|+++...+
T Consensus       148 ~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          148 EGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCC
T ss_pred             cCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999876543

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=4e-06  Score=64.92  Aligned_cols=84  Identities=17%  Similarity=0.370  Sum_probs=61.8

Q ss_pred             cccceEEEEecC--CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           82 EKYEEYEVEIEQ--PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        82 ~~~~~~~v~l~K--PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      ....+++|++.+  |+|+.+..+.+  .+++|..|.|++.|+++|.|++||+|+++-.   ..+...  +..++..++..
T Consensus         8 ~~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing---~~v~~~--~~~~~~~~~~~   82 (100)
T 2edp_A            8 GSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNING---TPLYGS--RQEALILIKGS   82 (100)
T ss_dssp             CCCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETT---EECCSC--SHHHHHHHHTC
T ss_pred             CCcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECC---EEccch--HHHHHHHHHhC
Confidence            345678888864  78888876533  3799999999999999944999999999763   222221  44566777766


Q ss_pred             CCceEEEEeeccC
Q 022783          158 VGPLLMKMQKRYG  170 (292)
Q Consensus       158 ~g~v~l~l~r~~~  170 (292)
                      ..++.|++.|.-.
T Consensus        83 ~~~v~l~v~R~~~   95 (100)
T 2edp_A           83 FRILKLIVRRRNS   95 (100)
T ss_dssp             CSSCEEEEEECCC
T ss_pred             CCeEEEEEEeCCC
Confidence            6788999998643

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.12  E-value=1.3e-05  Score=65.61  Aligned_cols=81  Identities=17%  Similarity=0.322  Sum_probs=59.5

Q ss_pred             EEEEecC----CceeEEeeeCCC--------------CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchh
Q 022783           87 YEVEIEQ----PYGLKFAKGRDG--------------GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~G--------------~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g  148 (292)
                      ..|+|.|    ++|+.+..+.+.              +++|..|.+++.|+++| |++||+|+++..   ..+ ......
T Consensus        29 r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng---~~v-~~~~~~  103 (132)
T 3l4f_D           29 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNG---QNV-VKVGHR  103 (132)
T ss_dssp             CEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESS---SBC-TTSCHH
T ss_pred             EEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECC---EEC-CCCCHH
Confidence            4666655    689999887552              69999999999999999 999999999863   111 112344


Q ss_pred             hHHHHhhccCCceEEEEeeccCCc
Q 022783          149 RTMYTIRQRVGPLLMKMQKRYGKM  172 (292)
Q Consensus       149 ~~~~ai~~r~g~v~l~l~r~~~~~  172 (292)
                      ++...|+.....+.|++.|...+.
T Consensus       104 ~~~~~l~~~g~~v~l~v~~~~~~~  127 (132)
T 3l4f_D          104 QVVNMIRQGGNTLMVKVVMVTRHP  127 (132)
T ss_dssp             HHHHHHHHTTTEEEEEEECCCC--
T ss_pred             HHHHHHHcCCCEEEEEEEECCCCC
Confidence            677788876678889888865443

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.12  E-value=5.6e-06  Score=66.65  Aligned_cols=84  Identities=18%  Similarity=0.314  Sum_probs=62.0

Q ss_pred             ccceEEEEecC----CceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783           83 KYEEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (292)
Q Consensus        83 ~~~~~~v~l~K----PlGl~~~~~~~-----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a  153 (292)
                      +.+..+|+|.|    ++|+.+..+.+     .+++|..|.|+|.|+++|.|++||+|+.+-..   .+ .....-+++..
T Consensus        22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~---~v-~~~~~~~~~~~   97 (120)
T 2iwo_A           22 SMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT---ST-EGMTHTQAVNL   97 (120)
T ss_dssp             ---CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTE---EC-TTCBHHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCE---EC-CCCCHHHHHHH
Confidence            33556777765    78999987643     38999999999999999559999999997632   22 11235567788


Q ss_pred             hhccCCceEEEEeeccC
Q 022783          154 IRQRVGPLLMKMQKRYG  170 (292)
Q Consensus       154 i~~r~g~v~l~l~r~~~  170 (292)
                      |+...+.|.|++.|..-
T Consensus        98 l~~~~~~v~l~v~r~g~  114 (120)
T 2iwo_A           98 LKNASGSIEMQVVAGGD  114 (120)
T ss_dssp             HHHCCSEEEEEEECCTT
T ss_pred             HHcCCCeEEEEEEECCc
Confidence            88778889999998643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.12  E-value=8.2e-07  Score=85.69  Aligned_cols=66  Identities=12%  Similarity=0.123  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ++++|..+++.|+|++|++.|++||+++|+.   ..+|+|+|.||..+|++++|++++++|+++..++.
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   74 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI   74 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence            3478889999999999999999999999974   56899999999999999999999999999976653

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.12  E-value=7.2e-06  Score=65.92  Aligned_cols=73  Identities=18%  Similarity=0.298  Sum_probs=57.7

Q ss_pred             CceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC-CceEEEEeec
Q 022783           94 PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKR  168 (292)
Q Consensus        94 PlGl~~~~~~~----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~-g~v~l~l~r~  168 (292)
                      .||+.+....+    ++++|..|.+++.|+++|.|++||+|+.+..   .   +...+.++..+|+... ..|.|++.|.
T Consensus        33 ~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing---~---~v~~~~~~~~~l~~~~g~~v~l~v~R~  106 (124)
T 1wh1_A           33 KLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQING---I---EVQNREEAVALLTSEENKNFSLLIARP  106 (124)
T ss_dssp             CCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESS---C---BCCSHHHHHHHHTCSSCCSCCEEEEEC
T ss_pred             cccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---E---ECCCHHHHHHHHHhCCCCEEEEEEEEC
Confidence            58999987653    7999999999999999998999999999763   2   2334567777888754 5789999986


Q ss_pred             cCCc
Q 022783          169 YGKM  172 (292)
Q Consensus       169 ~~~~  172 (292)
                      -..+
T Consensus       107 g~~~  110 (124)
T 1wh1_A          107 ELQL  110 (124)
T ss_dssp             SSCC
T ss_pred             CEEe
Confidence            5543

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.10  E-value=1e-05  Score=60.89  Aligned_cols=80  Identities=24%  Similarity=0.411  Sum_probs=57.0

Q ss_pred             ceEEEEec--CCceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           85 EEYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        85 ~~~~v~l~--KPlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      ++++|+++  .|+|+.+..+.  +.+++|..|.|++.|+++| |++||+|+.+-..   .+- ...+.++...++....+
T Consensus         3 ~~~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~-~~~~~~~~~~~~~~g~~   77 (89)
T 2q3g_A            3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGE---NAG-SLTHIEAQNKIRACGER   77 (89)
T ss_dssp             EEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---EGG-GCCHHHHHHHHHTCTTE
T ss_pred             cEEEEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCCCE
Confidence            34555555  45777776553  3489999999999999999 9999999997631   111 11345666777765667


Q ss_pred             eEEEEeecc
Q 022783          161 LLMKMQKRY  169 (292)
Q Consensus       161 v~l~l~r~~  169 (292)
                      +.|++.|.-
T Consensus        78 v~l~v~R~~   86 (89)
T 2q3g_A           78 LSLGLSRAI   86 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeCC
Confidence            899998853

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.10  E-value=1.1e-05  Score=65.39  Aligned_cols=79  Identities=19%  Similarity=0.373  Sum_probs=59.8

Q ss_pred             ceEEEEecC----CceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--h
Q 022783           85 EEYEVEIEQ----PYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--Y  147 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~-----------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~  147 (292)
                      ..++|++.|    .||+.+...           .+.+++|..|.|+|.|+++|.|++||+|+++...      +...  .
T Consensus        24 ~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~------~v~~~~~   97 (123)
T 2iwq_A           24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM------DLRDASH   97 (123)
T ss_dssp             CCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTE------ECTTCCH
T ss_pred             CCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE------ECCCCCH
Confidence            345566653    578887542           2358999999999999999999999999998632      2333  5


Q ss_pred             hhHHHHhhccCCceEEEEeecc
Q 022783          148 GRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       148 g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      .++..+|+...+++.|+++|.-
T Consensus        98 ~~~~~~l~~~~~~v~l~v~r~~  119 (123)
T 2iwq_A           98 EQAVEAIRKAGNPVVFMVQSII  119 (123)
T ss_dssp             HHHHHHHHHCCSSEEEEEECCC
T ss_pred             HHHHHHHHcCCCeEEEEEEECC
Confidence            6777888877779999998843

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.10  E-value=1e-05  Score=64.09  Aligned_cols=81  Identities=22%  Similarity=0.454  Sum_probs=57.7

Q ss_pred             EEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEE
Q 022783           88 EVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK  164 (292)
Q Consensus        88 ~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~  164 (292)
                      .|+|.|   ++|+.+....+++++|..|.+++.|+++| |++||+|+++..   ..+-....+ .....++....++.|+
T Consensus        22 ~v~l~~~~~~lG~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng---~~v~~~~~~-~~~~~~~~~g~~v~l~   96 (117)
T 1uit_A           22 HVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNG---INLRSATEQ-QARLIIGQQCDTITIL   96 (117)
T ss_dssp             EEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEETT---EETTTCCHH-HHHHHTTSCCSEEEEE
T ss_pred             EEEEEeCCCCccEEEEccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECC---EECCCCCHH-HHHHHHHcCCCeEEEE
Confidence            456555   89999988778899999999999999999 999999999863   222122222 1222334445678999


Q ss_pred             EeeccCCcc
Q 022783          165 MQKRYGKME  173 (292)
Q Consensus       165 l~r~~~~~~  173 (292)
                      +.|....+.
T Consensus        97 v~r~~~~~~  105 (117)
T 1uit_A           97 AQYNPHVHQ  105 (117)
T ss_dssp             ECCCSCCCC
T ss_pred             EEECCchhh
Confidence            998655443

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.09  E-value=9.8e-06  Score=61.18  Aligned_cols=73  Identities=18%  Similarity=0.348  Sum_probs=55.4

Q ss_pred             EecCCceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchh--hHHHHhhccCCceEEEE
Q 022783           90 EIEQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGPLLMKM  165 (292)
Q Consensus        90 ~l~KPlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g--~~~~ai~~r~g~v~l~l  165 (292)
                      .=+.|+|+.+..+.+  .+++|..|.|++.|+++| |++||+|+++..   .   +...+.  ++...|+....++.|.+
T Consensus        10 ~~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing---~---~v~~~~~~~~~~~l~~~g~~v~l~v   82 (91)
T 2pkt_A           10 QGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDG---E---NTSNMTHLEAQNRIKGCTDNLTLTV   82 (91)
T ss_dssp             ESSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETT---E---ECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred             CCCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECC---E---ECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            334578899887644  489999999999999999 999999999763   2   222333  56677777566789999


Q ss_pred             eecc
Q 022783          166 QKRY  169 (292)
Q Consensus       166 ~r~~  169 (292)
                      .|.-
T Consensus        83 ~R~g   86 (91)
T 2pkt_A           83 ARSE   86 (91)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            9854

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.09  E-value=1.5e-05  Score=63.91  Aligned_cols=76  Identities=13%  Similarity=0.065  Sum_probs=64.0

Q ss_pred             hhHHHHHhhHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCCHHHHHHHH
Q 022783          204 NYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSAL  275 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq~eeALe~L  275 (292)
                      .|+++..........+++|..|..    .+++++|+.+|++|.+..-     ..+++|++.+|..    .+++++|+..+
T Consensus        46 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~  120 (138)
T 1klx_A           46 QYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND-----QDGCLILGYKQYAGKGVVKNEKQAVKTF  120 (138)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence            444444444555677899999999    8999999999999998742     4579999999999    99999999999


Q ss_pred             HHHHHhCcc
Q 022783          276 EDALLAGYE  284 (292)
Q Consensus       276 ekAIelG~~  284 (292)
                      ++|.+.|..
T Consensus       121 ~~Aa~~g~~  129 (138)
T 1klx_A          121 EKACRLGSE  129 (138)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHCCCH
Confidence            999999965

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.09  E-value=1.4e-05  Score=64.01  Aligned_cols=82  Identities=16%  Similarity=0.207  Sum_probs=63.3

Q ss_pred             ceEEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      ...+|+|.|    .+|+.+..+.+  .+++|..|.++|.|+++|.+++||+|+++...   .+ ......++...|+...
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~---~v-~~~~~~~~~~~l~~~~   94 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR---SI-KGKTKVEVAKMIQEVK   94 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHSC
T ss_pred             CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCC
Confidence            445677777    68999987744  48999999999999999999999999998632   11 2224556778888777


Q ss_pred             CceEEEEeeccC
Q 022783          159 GPLLMKMQKRYG  170 (292)
Q Consensus       159 g~v~l~l~r~~~  170 (292)
                      +.|.|+++|.-+
T Consensus        95 ~~v~l~v~r~~~  106 (125)
T 3hpk_A           95 GEVTIHYNKLQA  106 (125)
T ss_dssp             SEEEEEEEEECS
T ss_pred             CeEEEEEEECCC
Confidence            889999998544

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.09  E-value=2.2e-06  Score=66.00  Aligned_cols=85  Identities=19%  Similarity=0.416  Sum_probs=62.6

Q ss_pred             ccceEEEEecC---CceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      ..+.+.|++.|   ++|+.+..+.+.  +++|..|.+++.|+++|.|++||+|+++..   ..+-. ....+++..|+..
T Consensus         9 ~~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng---~~v~~-~~~~~~~~~~~~~   84 (103)
T 1wfv_A            9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEING---ESTRD-MTHARAIELIKSG   84 (103)
T ss_dssp             CSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETT---EECSS-CCHHHHHHHHHHH
T ss_pred             CceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC---EECCC-CCHHHHHHHHHcC
Confidence            34567788864   589999877553  899999999999999999999999999863   22211 1244566677744


Q ss_pred             CCceEEEEeeccCC
Q 022783          158 VGPLLMKMQKRYGK  171 (292)
Q Consensus       158 ~g~v~l~l~r~~~~  171 (292)
                      ..+|.|++.|.-..
T Consensus        85 g~~v~l~v~R~~~~   98 (103)
T 1wfv_A           85 GRRVRLLLKRGTGS   98 (103)
T ss_dssp             CSEECEEEECTTCS
T ss_pred             CCeEEEEEEECCCC
Confidence            56789999986544

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.09  E-value=6.8e-06  Score=62.43  Aligned_cols=73  Identities=22%  Similarity=0.432  Sum_probs=57.4

Q ss_pred             CCceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783           93 QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus        93 KPlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      .+||+.+..+. +++++|..|.++|.|+++|.|++||+|+.+..   ..+ ......++...|+...+++.|++.|..
T Consensus        15 ~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing---~~v-~~~~~~~~~~~l~~~~~~v~l~v~~~~   88 (93)
T 3o46_A           15 EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNG---IPV-EDKRPEEIIQILAQSQGAITFKIIPGS   88 (93)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETT---EES-TTSCHHHHHHHHHHCCEEEEEEEECC-
T ss_pred             CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            48999998753 56999999999999999999999999999863   222 223455677888877788999988754

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.09  E-value=5.3e-06  Score=64.84  Aligned_cols=83  Identities=22%  Similarity=0.396  Sum_probs=62.5

Q ss_pred             ccceEEEEecC---CceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      ..+...|+|.|   ++|+.+..+.+ .+++|..|.+++.|+++|.|++||+|+++-..   .+-.. ....+...++...
T Consensus        13 ~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~---~v~~~-~~~~~~~~~~~~~   88 (113)
T 1um7_A           13 AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGV---NLRNA-THEQAAAALKRAG   88 (113)
T ss_dssp             CCSEEEEEEECCSSCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSC---BCTTC-CHHHHHHHHHSCC
T ss_pred             CCceEEEEEEECCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHhCC
Confidence            44678888877   68999887654 59999999999999999989999999998632   22111 2345556677656


Q ss_pred             CceEEEEeecc
Q 022783          159 GPLLMKMQKRY  169 (292)
Q Consensus       159 g~v~l~l~r~~  169 (292)
                      ..+.|.+.|..
T Consensus        89 ~~v~l~v~r~~   99 (113)
T 1um7_A           89 QSVTIVAQYRP   99 (113)
T ss_dssp             SEEEEEEECCH
T ss_pred             CcEEEEEEECc
Confidence            77899998854

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.09  E-value=7e-06  Score=69.31  Aligned_cols=63  Identities=16%  Similarity=0.103  Sum_probs=44.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ...|..+...|+|++|+..|++++++.|..   .....+++++|.+|..+|++++|+..+++|+++
T Consensus       267 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          267 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            477777777777777777777777654432   122446777777777778888888777777776

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.08  E-value=5.3e-06  Score=58.73  Aligned_cols=79  Identities=23%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc  261 (292)
                      .+.++.|.+....++.+++  .|.+.....+.. ...++.|..+++.|+|++|+..|+++++++|++   ..+++|++.+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~   86 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---HHHHHHHHHH
Confidence            3444455554444444443  444444433332 445699999999999999999999999999974   4579999999


Q ss_pred             HHhcC
Q 022783          262 YSKLN  266 (292)
Q Consensus       262 yakLg  266 (292)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98765

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.08  E-value=2.4e-05  Score=60.76  Aligned_cols=82  Identities=17%  Similarity=0.318  Sum_probs=57.2

Q ss_pred             cccceEEEEecCC----ceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhh
Q 022783           82 EKYEEYEVEIEQP----YGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (292)
Q Consensus        82 ~~~~~~~v~l~KP----lGl~~~~~~~--------G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~  149 (292)
                      +.++.++|+|.|.    +|+.+..+.+        .+++|..|.|++.|+ +| |++||+|+++..   ..+-....+ .
T Consensus         4 ~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng---~~v~~~~~~-~   77 (107)
T 2h2b_A            4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNG---VSMDNVEHA-F   77 (107)
T ss_dssp             CCEEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETT---EECTTCCHH-H
T ss_pred             ccceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECC---EECCCccHH-H
Confidence            3456788888775    8899886543        499999999999999 77 999999999863   222222222 2


Q ss_pred             HHHHhhccCCceEEEEeecc
Q 022783          150 TMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       150 ~~~ai~~r~g~v~l~l~r~~  169 (292)
                      .+..++....++.|++.|.-
T Consensus        78 ~~~~~~~~g~~v~l~v~R~~   97 (107)
T 2h2b_A           78 AVQQLRKSGKNAKITIRRKK   97 (107)
T ss_dssp             HHHHHHTCCSEEEEEEEEES
T ss_pred             HHHHhhCCCCEEEEEEEECC
Confidence            22334444567899998853

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.07  E-value=4.8e-06  Score=64.58  Aligned_cols=82  Identities=22%  Similarity=0.344  Sum_probs=59.8

Q ss_pred             ceEEEEec--CCceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           85 EEYEVEIE--QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        85 ~~~~v~l~--KPlGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      ++++|+|.  .|+|+.+..+.+.  +++|..|.+++.|+++| |++||+|+++..   ..+... ..-.++..++....+
T Consensus         5 ~~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing---~~v~~~-~~~~~~~~~~~~g~~   79 (103)
T 1wf7_A            5 SSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDG---ISAQGM-THLEAQNKIKACTGS   79 (103)
T ss_dssp             CCEEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETT---EECSSC-CHHHHHHHHHHCSSE
T ss_pred             CEEEEEEeCCCccCEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECC---EECCCC-CHHHHHHHHHcCCCe
Confidence            45777776  7788888876543  69999999999999999 999999999763   223222 223455666655667


Q ss_pred             eEEEEeeccCC
Q 022783          161 LLMKMQKRYGK  171 (292)
Q Consensus       161 v~l~l~r~~~~  171 (292)
                      +.|++.|.-..
T Consensus        80 v~l~v~R~g~~   90 (103)
T 1wf7_A           80 LNMTLQRASAA   90 (103)
T ss_dssp             EEEEECCCSCC
T ss_pred             EEEEEEeCCCc
Confidence            89999886443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.07  E-value=1.5e-05  Score=71.33  Aligned_cols=60  Identities=15%  Similarity=0.055  Sum_probs=53.4

Q ss_pred             HHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783          226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       226 ~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~  288 (292)
                      ...|+|++|+..|+++++.+|++   ..+|+|+|.||..+|++++|+..+++|+++..++...
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            34599999999999999999973   5689999999999999999999999999998876543

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.07  E-value=5.7e-06  Score=64.97  Aligned_cols=81  Identities=21%  Similarity=0.419  Sum_probs=60.7

Q ss_pred             EEEEec----CCceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHH
Q 022783           87 YEVEIE----QPYGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (292)
Q Consensus        87 ~~v~l~----KPlGl~~~~~~-----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~  151 (292)
                      .+|+|.    .+||+.+..+.           +.+++|..|.+++.|+++|.|++||+|+.+..   ..+- ...+.+++
T Consensus        11 ~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng---~~v~-~~~~~~~~   86 (111)
T 1uju_A           11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQ---QSLL-GLTHGEAV   86 (111)
T ss_dssp             SCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSS---CBCT-TSCHHHHH
T ss_pred             EEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EECC-CCCHHHHH
Confidence            445553    46899998754           23899999999999999999999999999763   2221 12455777


Q ss_pred             HHhhccCCceEEEEeeccCC
Q 022783          152 YTIRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       152 ~ai~~r~g~v~l~l~r~~~~  171 (292)
                      .+|+.....+.|++.|.+-.
T Consensus        87 ~~l~~~g~~v~l~v~r~~~~  106 (111)
T 1uju_A           87 QLLRSVGDTLTVLVCDGFES  106 (111)
T ss_dssp             HHHSSCSSEEEECCCCCCCC
T ss_pred             HHHHcCCCeEEEEEEECCCC
Confidence            88887667889999987643

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.07  E-value=1.6e-05  Score=62.72  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=59.3

Q ss_pred             ccceEEEEecC----CceeEEeeeC----CC-----CeEEEEeCCCCCccc-ccCcccCCEEEEeccccCcccccccchh
Q 022783           83 KYEEYEVEIEQ----PYGLKFAKGR----DG-----GTYIDAIAPGGSADK-TGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (292)
Q Consensus        83 ~~~~~~v~l~K----PlGl~~~~~~----~G-----~v~V~~v~~ggnA~k-~g~i~vGD~l~~~Sa~fg~e~w~a~~~g  148 (292)
                      ..+..+|+|.|    ++|+.+....    .|     .++|..|.+++.|++ +| |++||+|+++..   ..+.. ..+.
T Consensus         8 ~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing---~~v~~-~~~~   82 (114)
T 1uew_A            8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNG---QSIIN-MPHA   82 (114)
T ss_dssp             CCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETT---BCTTT-SCHH
T ss_pred             cccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECC---EECCC-CCHH
Confidence            34557788865    6899997542    23     569999999999999 77 999999999763   22221 1245


Q ss_pred             hHHHHhhccCCceEEEEeecc
Q 022783          149 RTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       149 ~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      ++..+|+.....|.|++.|.-
T Consensus        83 ~~~~~l~~~g~~v~l~v~r~~  103 (114)
T 1uew_A           83 DIVKLIKDAGLSVTLRIIPQE  103 (114)
T ss_dssp             HHHHHHHHTTTEEEEEECCCS
T ss_pred             HHHHHHHcCCCeEEEEEEeCC
Confidence            677778775667889998853

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.07  E-value=9.9e-06  Score=61.13  Aligned_cols=79  Identities=20%  Similarity=0.423  Sum_probs=58.1

Q ss_pred             EEEEec---CCceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           87 YEVEIE---QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        87 ~~v~l~---KPlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      ..|+|.   .++|+.+..+.  +.+++|..|.+++.|+++|.|++||+|+++..   ..+- ...+.++...++...+++
T Consensus         7 r~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng---~~v~-~~~~~~~~~~~~~~~~~v   82 (93)
T 2dkr_A            7 GVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNG---VSVE-GEQHEKAVELLKAAQGSV   82 (93)
T ss_dssp             CEEEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETT---EECT-TSCHHHHHHHHHHCCSEE
T ss_pred             EEEEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EECC-CCCHHHHHHHHHhCCCcE
Confidence            345554   57899997643  46999999999999999966999999999763   1121 113456667777666789


Q ss_pred             EEEEeecc
Q 022783          162 LMKMQKRY  169 (292)
Q Consensus       162 ~l~l~r~~  169 (292)
                      .|.+.|..
T Consensus        83 ~l~v~r~~   90 (93)
T 2dkr_A           83 KLVVRSGP   90 (93)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCC
Confidence            99998854

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.06  E-value=1e-05  Score=61.37  Aligned_cols=70  Identities=19%  Similarity=0.334  Sum_probs=53.5

Q ss_pred             CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccCC
Q 022783           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus        94 PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~~  171 (292)
                      ++|+.+.    +++||..|.++|.|+++|.+++||+|+.+...   .+ ......++...|+...+.+.|++.+....
T Consensus        14 ~~G~~~~----~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~---~v-~~~~~~~~~~~i~~~~~~v~L~v~~~~~~   83 (88)
T 3e17_A           14 EYGLRLG----SQIFVKEMTRTGLATKDGNLHEGDIILKINGT---VT-ENMSLTDARKLIEKSRGKLQLVVLRDLEH   83 (88)
T ss_dssp             CCCEEEE----EEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHTTTEEEEEECCC---
T ss_pred             CCCEEEe----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCeEEEEEeCCCcc
Confidence            5677664    48999999999999999999999999998742   11 11345577888998889999998876543

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.06  E-value=1.9e-05  Score=62.59  Aligned_cols=83  Identities=22%  Similarity=0.384  Sum_probs=60.5

Q ss_pred             ccccceEEEEec----CCceeEEeeeC--------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchh
Q 022783           81 EEKYEEYEVEIE----QPYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (292)
Q Consensus        81 ~~~~~~~~v~l~----KPlGl~~~~~~--------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g  148 (292)
                      +...+.++|+|.    .+||+.+..+.        +.+++|..|.|++.|+ +| |++||+|+.+..   ..+ .....-
T Consensus        10 ~~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng---~~v-~~~~~~   83 (117)
T 2csj_A           10 EVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNG---TPM-EDVLHS   83 (117)
T ss_dssp             CEEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESS---CBC-BTCCHH
T ss_pred             cccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECC---EEC-CCcCHH
Confidence            345677888885    46889988764        3389999999999997 66 999999999763   222 111233


Q ss_pred             hHHHHhhccCCceEEEEeecc
Q 022783          149 RTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       149 ~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      ++..+|+....++.|++.|+-
T Consensus        84 ~~~~~l~~~~~~v~l~v~R~~  104 (117)
T 2csj_A           84 FAVQQLRKSGKIAAIVVKRPR  104 (117)
T ss_dssp             HHHHHHHHSCSEEEEEEEEEE
T ss_pred             HHHHHHhcCCCeEEEEEEECC
Confidence            566677766678899998854

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.06  E-value=1.5e-05  Score=64.51  Aligned_cols=72  Identities=19%  Similarity=0.365  Sum_probs=55.2

Q ss_pred             EecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccch--hhHHHHhhc--cCCceEEEE
Q 022783           90 EIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQ--RVGPLLMKM  165 (292)
Q Consensus        90 ~l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~--g~~~~ai~~--r~g~v~l~l  165 (292)
                      .-..+||+.+..+.+++++|..|.|++.|+++| |++||+|+++..   .   +...+  .++..+|..  ...++.|.+
T Consensus        36 ~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng---~---~v~~~~~~~~~~~l~~~~~g~~v~l~v  108 (124)
T 3tsv_A           36 RKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNN---V---DFTNIIREEAVLFLLDLPKGEEVTILA  108 (124)
T ss_dssp             ECSSCCCEEEEECTTSCEEEEEECTTCHHHHTT-CCTTEEEEEETT---E---ECSSCCHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCceeEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECC---E---ECCCCCHHHHHHHHHhcCCCCEEEEEE
Confidence            334589999988778899999999999999999 999999999763   2   22222  455666663  345688999


Q ss_pred             eec
Q 022783          166 QKR  168 (292)
Q Consensus       166 ~r~  168 (292)
                      +|.
T Consensus       109 ~R~  111 (124)
T 3tsv_A          109 QKK  111 (124)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            884

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.06  E-value=7.9e-06  Score=66.25  Aligned_cols=82  Identities=11%  Similarity=0.215  Sum_probs=60.8

Q ss_pred             ceEEEEecC---CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--  157 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--  157 (292)
                      +.++|+|.|   .+|+.+..+.+  .+++|..|.++|.|+++|.|++||+|+.+-..    -.......++..+|+..  
T Consensus        18 ~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~----~v~~~~~~~~~~~l~~~~~   93 (129)
T 2kpk_A           18 KFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT----CVLGHTHAQVVKIFQSIPI   93 (129)
T ss_dssp             EEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTE----ECTTSCHHHHHHHHHHSCT
T ss_pred             cEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE----ECCCCCHHHHHHHHHhCCC
Confidence            556777765   68898876533  37999999999999999999999999997632    11111344667778765  


Q ss_pred             CCceEEEEeeccC
Q 022783          158 VGPLLMKMQKRYG  170 (292)
Q Consensus       158 ~g~v~l~l~r~~~  170 (292)
                      ...|.|++.|..-
T Consensus        94 g~~v~l~v~R~~~  106 (129)
T 2kpk_A           94 GASVDLELCRGYP  106 (129)
T ss_dssp             TEEEEEEEEECSC
T ss_pred             CCeEEEEEEeCCC
Confidence            4568999999753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.06  E-value=1.4e-05  Score=71.53  Aligned_cols=99  Identities=16%  Similarity=0.090  Sum_probs=73.2

Q ss_pred             HHHhhccccchhhHHH-----------------HHHH--hhHHHHHhhH-------hHHHHHHHHHHHHHcCCHHHHHHH
Q 022783          184 IRAERNSGVISNRVRE-----------------IQMQ--NYMKKKEQKE-------RREQDLREGLQLYRTGKYEVAREK  237 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~e-----------------iqea--~Y~kkk~lk~-------~~~~~~n~G~~L~k~gdYeeAIe~  237 (292)
                      ..++.+.|.+...+.+                 .+++  .|.+...+..       ......++|..++..|+|++|+..
T Consensus       166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  245 (411)
T 4a1s_A          166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH  245 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            4466777888877777                 6665  3333322211       112345899999999999999999


Q ss_pred             HHHHHcCCCCcc---chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          238 FESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       238 fekALeldP~~~---d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      |++++++.|...   ....+++|+|.+|..+|++++|+..+++|+++.
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  293 (411)
T 4a1s_A          246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA  293 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            999998776421   224479999999999999999999999998764

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.05  E-value=2.5e-05  Score=59.52  Aligned_cols=78  Identities=18%  Similarity=0.331  Sum_probs=56.4

Q ss_pred             ceEEEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      ....|+|.|   ++|+.+..  +.+++|..|.+++.|+++| |++||+|+++..   ..+-..... +++..++ ...++
T Consensus         8 ~~r~v~l~~~~~~~G~~l~~--~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing---~~v~~~~~~-~~~~~~~-~g~~v   79 (93)
T 2dls_A            8 VQRCVIIQKDQHGFGFTVSG--DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNG---TMVTNSSHL-EVVKLIK-SGAYV   79 (93)
T ss_dssp             CEEEEEEECSSSSCCEEEEC--SSSCEEEEECSSSTTTTTT-CCSSCEEEEETT---EECSSSCHH-HHHHHHT-SSSEE
T ss_pred             CCEEEEEEeCCCceeEEEeC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECC---EECCCCCHH-HHHHhhc-CCCEE
Confidence            345566655   57777754  5689999999999999999 999999999774   222222223 5666676 36788


Q ss_pred             EEEEeeccC
Q 022783          162 LMKMQKRYG  170 (292)
Q Consensus       162 ~l~l~r~~~  170 (292)
                      .|++.|...
T Consensus        80 ~l~v~R~~~   88 (93)
T 2dls_A           80 ALTLLGSSS   88 (93)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEECCC
Confidence            999998643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.05  E-value=1.5e-05  Score=70.14  Aligned_cols=64  Identities=16%  Similarity=0.085  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..+.|..+...|+|++|+..|++++++.+..   .....+++++|.+|..+|++++|+..+++|+++
T Consensus       270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3588888888888888888888888764432   123557888888888888888888888888776

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.05  E-value=8.3e-06  Score=66.61  Aligned_cols=71  Identities=21%  Similarity=0.334  Sum_probs=53.5

Q ss_pred             CceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC--CceEEEEe
Q 022783           94 PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV--GPLLMKMQ  166 (292)
Q Consensus        94 PlGl~~~~~~-----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~--g~v~l~l~  166 (292)
                      +||+.+..+.     +.++||..|.++|.|+++|.|++||+|+.+-..    -.....+.++...|+...  ..|.|++.
T Consensus        49 ~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~----~v~~~~~~~~~~~l~~~~~g~~v~l~v~  124 (131)
T 1wfg_A           49 MLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGR----LLQGATFEEVYNIILESKPEPQVELVVS  124 (131)
T ss_dssp             TTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTE----ECTTCCHHHHHHHHHHTSSSSEEEEEEE
T ss_pred             CCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE----ECCCCCHHHHHHHHHhcCCCCEEEEEEE
Confidence            4899996542     238999999999999999999999999997632    111123456777887653  67899998


Q ss_pred             ec
Q 022783          167 KR  168 (292)
Q Consensus       167 r~  168 (292)
                      |.
T Consensus       125 R~  126 (131)
T 1wfg_A          125 RS  126 (131)
T ss_dssp             EE
T ss_pred             cC
Confidence            85

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.05  E-value=8.4e-06  Score=60.54  Aligned_cols=77  Identities=23%  Similarity=0.393  Sum_probs=55.6

Q ss_pred             EEEEecCC---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEE
Q 022783           87 YEVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM  163 (292)
Q Consensus        87 ~~v~l~KP---lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l  163 (292)
                      .+|+|.|.   +|+.+..  +.+++|..|.+++.|+++| |++||+|+++..   ..+-.. .+.+++..|+.....+.|
T Consensus         4 r~v~l~~~~~g~G~~~~~--~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing---~~v~~~-~~~~~~~~l~~~~~~v~l   76 (83)
T 2kv8_A            4 RSVEVARGRAGYGFTLSG--QAPCVLSCVMRGSPADFVG-LRAGDQILAVNE---INVKKA-SHEDVVKLIGKCSGVLHM   76 (83)
T ss_dssp             EEEEECCCSSCCSCBCCC--SSSCBCCBCCTTSTTTTTT-CCTTCEEEEETT---EECSSC-CHHHHHHHHTTCSSCEEE
T ss_pred             EEEEEEeCCCcccEEEEc--CCCeEEEEeCCCChHHHcC-CCCCCEEEEECC---EECCCC-CHHHHHHHHHhCCCeEEE
Confidence            56666654   5555543  4479999999999999999 999999999763   222221 135677777766678999


Q ss_pred             EEeeccC
Q 022783          164 KMQKRYG  170 (292)
Q Consensus       164 ~l~r~~~  170 (292)
                      ++.|..|
T Consensus        77 ~v~R~~g   83 (83)
T 2kv8_A           77 VIAEGVG   83 (83)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCC
Confidence            9999754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.04  E-value=1.5e-05  Score=70.14  Aligned_cols=99  Identities=18%  Similarity=0.085  Sum_probs=69.7

Q ss_pred             HHHhhccccchhhHHH--------------------HHHH--hhHHHHHhhH------h-HHHHHHHHHHHHHcCCHHHH
Q 022783          184 IRAERNSGVISNRVRE--------------------IQMQ--NYMKKKEQKE------R-REQDLREGLQLYRTGKYEVA  234 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~e--------------------iqea--~Y~kkk~lk~------~-~~~~~n~G~~L~k~gdYeeA  234 (292)
                      ..++.+.|.+...+.+                    .+++  .|.+...+-.      . .....+.|..++..|+|++|
T Consensus       127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  206 (406)
T 3sf4_A          127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  206 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence            3466777777777777                    6665  3333322211      1 12345889999999999999


Q ss_pred             HHHHHHHHcCCCCcc---chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          235 REKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       235 Ie~fekALeldP~~~---d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +..|++++++.|+..   ....+|+|+|.+|..+|++++|+..+++|+++.
T Consensus       207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  257 (406)
T 3sf4_A          207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  257 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999997655422   234578999999999999999999999998763

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.04  E-value=1.6e-05  Score=60.88  Aligned_cols=76  Identities=12%  Similarity=0.245  Sum_probs=56.3

Q ss_pred             ceEEEEecC----CceeEEee-------eC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhh
Q 022783           85 EEYEVEIEQ----PYGLKFAK-------GR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGR  149 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~-------~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~  149 (292)
                      ...+|+|.|    ++|+.+..       +.  +.+++|..|.+++.|+++| |++||+|+.+...      +...  +.+
T Consensus         4 ~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~   76 (96)
T 2ego_A            4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGL------NVEGIRHRE   76 (96)
T ss_dssp             CEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTE------ECTTCCHHH
T ss_pred             ccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHH
Confidence            346677765    67888875       22  2389999999999999999 9999999998631      2222  456


Q ss_pred             HHHHhhccCCceEEEEee
Q 022783          150 TMYTIRQRVGPLLMKMQK  167 (292)
Q Consensus       150 ~~~ai~~r~g~v~l~l~r  167 (292)
                      +...|+...+++.|++.+
T Consensus        77 ~~~~l~~~~~~v~l~v~~   94 (96)
T 2ego_A           77 IVDIIKASGNVLRLETLY   94 (96)
T ss_dssp             HHHHHHHTTTEEEEEEEC
T ss_pred             HHHHHHhCCCeEEEEEEE
Confidence            777787777788888876

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.04  E-value=1.2e-05  Score=62.64  Aligned_cols=83  Identities=20%  Similarity=0.335  Sum_probs=61.0

Q ss_pred             EEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           87 YEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      ..|+|.|    ++|+.+.-+.+  .+++|..|.++|.|++++.|++||+|+.+..   ..+ ....+.++...|+...+.
T Consensus        11 ~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing---~~v-~~~~~~~~~~~l~~~~~~   86 (103)
T 2dc2_A           11 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNG---VNL-RDTKHKEAVTILSQQRGE   86 (103)
T ss_dssp             EEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETT---EES-TTSCHHHHHHHHHHCCSE
T ss_pred             EEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhCCCc
Confidence            5666654    78999986633  3899999999999999744999999999863   222 112466778888888889


Q ss_pred             eEEEEeeccCCcc
Q 022783          161 LLMKMQKRYGKME  173 (292)
Q Consensus       161 v~l~l~r~~~~~~  173 (292)
                      +.|++.|.+...+
T Consensus        87 v~l~v~~~~~~~~   99 (103)
T 2dc2_A           87 IEFEVVYVALEHH   99 (103)
T ss_dssp             EEEEEEECC----
T ss_pred             EEEEEEecCCcch
Confidence            9999999877643

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.04  E-value=1.3e-05  Score=61.73  Aligned_cols=70  Identities=20%  Similarity=0.468  Sum_probs=52.3

Q ss_pred             CceeEEeee--------------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC-
Q 022783           94 PYGLKFAKG--------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-  158 (292)
Q Consensus        94 PlGl~~~~~--------------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~-  158 (292)
                      +||+.+..+              .++|++|..|.|++.|+++| |++||+|+++..   ..+ ....+.++..+|+... 
T Consensus        20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing---~~v-~~~~~~~~~~~l~~~~g   94 (104)
T 3sfj_A           20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNG---WDM-TMVTHDQARKRLTKRSE   94 (104)
T ss_dssp             ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETT---EEC-TTCCHHHHHHHHTCTTC
T ss_pred             cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECC---EEC-CCCCHHHHHHHHHhCCC
Confidence            489988732              24589999999999999999 999999999762   222 1122556777887654 


Q ss_pred             CceEEEEeec
Q 022783          159 GPLLMKMQKR  168 (292)
Q Consensus       159 g~v~l~l~r~  168 (292)
                      .++.|.+.|+
T Consensus        95 ~~v~l~v~R~  104 (104)
T 3sfj_A           95 EVVRLLVTRQ  104 (104)
T ss_dssp             SEEEEEEEEC
T ss_pred             CEEEEEEEcC
Confidence            4788888874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.03  E-value=1.1e-05  Score=75.87  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=33.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcC------CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGS------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALel------dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..|..+.+.|++++|++.|++++++      +|+  ....+|++++.+|.++|++++|++.++++++++.+
T Consensus       480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  548 (597)
T 2xpi_A          480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK--PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN  548 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG--GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh--hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            4555555555555555555555544      221  11344555555555555566666555555555543

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.03  E-value=1.3e-05  Score=60.66  Aligned_cols=80  Identities=23%  Similarity=0.340  Sum_probs=57.5

Q ss_pred             EEEEecC---CceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           87 YEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        87 ~~v~l~K---PlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      -.|+|.|   .+|+.+..+.+ .+++|..|.+++.|+++| |++||+|+++...   .+ ....+.++...|+...+.+.
T Consensus         7 r~v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~---~v-~~~~~~~~~~~l~~~~~~~~   81 (95)
T 3r68_A            7 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK---SV-EALDHDGVVEMIRKGGDQTT   81 (95)
T ss_dssp             EEEEEECBTTBCSCEEEEC--CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTE---EC-TTCCHHHHHHHHHTTTTEEE
T ss_pred             EEEEEecCCCcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCCeEE
Confidence            3455544   68899887644 399999999999999999 9999999998631   11 11133567788888788888


Q ss_pred             EEEeeccCC
Q 022783          163 MKMQKRYGK  171 (292)
Q Consensus       163 l~l~r~~~~  171 (292)
                      +.+.|+-++
T Consensus        82 ~~~~r~~~~   90 (95)
T 3r68_A           82 LLVLDKELE   90 (95)
T ss_dssp             EEEEECC--
T ss_pred             EEEECCccc
Confidence            888776543

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.03  E-value=2.1e-05  Score=62.55  Aligned_cols=85  Identities=25%  Similarity=0.433  Sum_probs=62.3

Q ss_pred             cccceEEEEecC----------CceeEEeeeCC-------CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccc
Q 022783           82 EKYEEYEVEIEQ----------PYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPA  144 (292)
Q Consensus        82 ~~~~~~~v~l~K----------PlGl~~~~~~~-------G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a  144 (292)
                      ......+|+|.|          +||+.+..+.+       .+++|..|.+++.|+++|.|++||+|+.+..   ..+ ..
T Consensus         9 ~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng---~~v-~~   84 (117)
T 1ujd_A            9 YIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNG---IPL-TS   84 (117)
T ss_dssp             CSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETT---EEC-TT
T ss_pred             CCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEc-CC
Confidence            344445666655          47899876543       2799999999999999999999999999863   222 12


Q ss_pred             cchhhHHHHhhccCCceEEEEeeccC
Q 022783          145 AEYGRTMYTIRQRVGPLLMKMQKRYG  170 (292)
Q Consensus       145 ~~~g~~~~ai~~r~g~v~l~l~r~~~  170 (292)
                      ..+-++...|+...++|.|+++|...
T Consensus        85 ~~~~~~~~~l~~~~~~v~l~v~R~~~  110 (117)
T 1ujd_A           85 KTYEEVQSIISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             CCHHHHHHHHSCCSSCEEEEEESSCC
T ss_pred             CCHHHHHHHHhcCCCEEEEEEEECCc
Confidence            23456777888877889999998644

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.02  E-value=1.8e-05  Score=63.48  Aligned_cols=88  Identities=17%  Similarity=0.327  Sum_probs=65.3

Q ss_pred             cccccceEEEEecC----CceeEEeee------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhh
Q 022783           80 QEEKYEEYEVEIEQ----PYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (292)
Q Consensus        80 ~~~~~~~~~v~l~K----PlGl~~~~~------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~  149 (292)
                      .-...+.++|+|.|    .+|+.+..+      .+..++|..|.+++.|+++|.|++||+|+++..   ..+ ....+.+
T Consensus        10 ~~~~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing---~~v-~~~~~~~   85 (122)
T 1v5q_A           10 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING---IPT-EDSTFEE   85 (122)
T ss_dssp             CCCCEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETT---EES-SSSCHHH
T ss_pred             ccccceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECC---EEC-CCCCHHH
Confidence            34456788999975    488998754      235799999999999999999999999999763   222 1122556


Q ss_pred             HHHHhhcc--CCceEEEEeeccCC
Q 022783          150 TMYTIRQR--VGPLLMKMQKRYGK  171 (292)
Q Consensus       150 ~~~ai~~r--~g~v~l~l~r~~~~  171 (292)
                      +..+|+..  ..++.|+++|....
T Consensus        86 ~~~~l~~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           86 ANQLLRDSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECCC
T ss_pred             HHHHHHhCCCCCeEEEEEEECCcc
Confidence            77777765  35899999996543

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.02  E-value=8.2e-06  Score=59.53  Aligned_cols=67  Identities=27%  Similarity=0.418  Sum_probs=52.3

Q ss_pred             cCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCccccccc--chhhHHHHhhccCCceEEEEeec
Q 022783           92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus        92 ~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~--~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      .+++|+.+.    ++++|..|.+++.|+++|.|++||+|+++..   .   +..  .+..+..+|+...+++.|.+.|.
T Consensus        12 ~~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing---~---~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           12 NEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKING---T---VTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             TCCCCEEEE----EEEEEEEECTTSHHHHHSSCCTTCEEEEETT---E---ECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             CCCCCEEEe----CCEEEEEECCCChHHHCCCCCCCCEEEEECC---E---ECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            457787776    6899999999999999998999999999763   2   223  45566777876667888888873

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.02  E-value=1.1e-05  Score=64.14  Aligned_cols=86  Identities=17%  Similarity=0.268  Sum_probs=61.7

Q ss_pred             cccceEEEEecC----CceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           82 EKYEEYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        82 ~~~~~~~v~l~K----PlGl~~~~~~~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      ...+...|.|.|    ++|+.+..+.+   .+++|..|.|++.|+++|.|++||+|+++-.   ..+ ....+-++..+|
T Consensus        12 ~~~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing---~~v-~~~~~~~~~~~l   87 (119)
T 1x6d_A           12 QLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSING---KSL-KGTTHHDALAIL   87 (119)
T ss_dssp             SCTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETT---EEC-SSCCHHHHHHHH
T ss_pred             CCCCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHH
Confidence            344566777766    69999977643   5899999999999999999999999999763   222 222455677788


Q ss_pred             hccCCceE-EEEeeccCC
Q 022783          155 RQRVGPLL-MKMQKRYGK  171 (292)
Q Consensus       155 ~~r~g~v~-l~l~r~~~~  171 (292)
                      +...+.+. +.+.|..-.
T Consensus        88 ~~~~~~~~~l~v~R~~~~  105 (119)
T 1x6d_A           88 RQAREPRQAVIVTRKLTP  105 (119)
T ss_dssp             HHTTSSSEEEEEEECCCS
T ss_pred             HhCCCCeEEEEEEcCCCc
Confidence            76666654 677775433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.02  E-value=1.6e-05  Score=71.06  Aligned_cols=65  Identities=14%  Similarity=0.110  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~---a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ++.+|..++..|+|++|+..|++++++.....+.   ..+|+++|.+|..+|++++|+..+++|+++.
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A           89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            4588999999999999999999998775433233   4678899999999999999999999998874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.01  E-value=1.8e-05  Score=66.78  Aligned_cols=66  Identities=17%  Similarity=0.065  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~---a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ....|..++..|+|++|++.|++++++.+...+.   ..+|+++|.+|..+|++++|+..+++|+++..
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  114 (338)
T 3ro2_A           46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR  114 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            3477888888888888888888888765543222   45778888888888888888888888887753

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.01  E-value=1.5e-05  Score=62.48  Aligned_cols=75  Identities=27%  Similarity=0.461  Sum_probs=57.7

Q ss_pred             cCCceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEE
Q 022783           92 EQPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK  164 (292)
Q Consensus        92 ~KPlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~  164 (292)
                      ..++|+.+.-+.       +++++|..|.+++.|+++|.|++||+|+.+...   .+ ......+++.+++...++|.|+
T Consensus        12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~---~v-~~~~~~~~~~~l~~~~~~v~l~   87 (106)
T 4amh_A           12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV---AL-EEVTHEEAVTALKNTSDFVYLK   87 (106)
T ss_dssp             CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-SSCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHhCCCCeEEEE
Confidence            467899987653       348999999999999999999999999998642   12 1123446677888777899999


Q ss_pred             EeeccC
Q 022783          165 MQKRYG  170 (292)
Q Consensus       165 l~r~~~  170 (292)
                      +.|.-.
T Consensus        88 v~R~~~   93 (106)
T 4amh_A           88 VAKPGS   93 (106)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            999654

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.01  E-value=1.3e-05  Score=63.65  Aligned_cols=81  Identities=19%  Similarity=0.339  Sum_probs=59.8

Q ss_pred             ceEEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCcccc-cCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKT-GMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k~-g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      +...|+|.|    ++|+.+..+.+  .+++|..|.+++.|+++ |.|++||+|+++-..   .+ ....+-++...|+..
T Consensus        15 ~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~---~v-~~~~~~~~~~~~~~~   90 (119)
T 2cs5_A           15 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR---DI-AEHTHDQVVLFIKAS   90 (119)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTB---CT-TSSCHHHHHHHHHHH
T ss_pred             CeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhc
Confidence            457788887    69999987643  37999999999999999 349999999997631   11 112344566677755


Q ss_pred             C----CceEEEEeecc
Q 022783          158 V----GPLLMKMQKRY  169 (292)
Q Consensus       158 ~----g~v~l~l~r~~  169 (292)
                      .    .+|.|++.|..
T Consensus        91 ~~~~~~~v~l~v~R~~  106 (119)
T 2cs5_A           91 CERHSGELMLLVRPNA  106 (119)
T ss_dssp             HHCCSSCEEEEEECCC
T ss_pred             cccCCCEEEEEEEccc
Confidence            3    48999999863

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.99  E-value=1.9e-05  Score=67.47  Aligned_cols=71  Identities=13%  Similarity=0.113  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC-CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          215 REQDLREGLQLYRTG---KYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       215 ~~~~~n~G~~L~k~g---dYeeAIe~fekALeld-P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ....|+.|..|.+.+   ++++||..+++.+..+ |.  +...++||+|..|+++|+|++|+..|+++|++-+++.+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            466789999999988   8889999999999887 63  33567999999999999999999999999999887543

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=97.98  E-value=1.9e-05  Score=59.36  Aligned_cols=66  Identities=27%  Similarity=0.419  Sum_probs=52.1

Q ss_pred             CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCccccccc--chhhHHHHhhccCCceEEEEeec
Q 022783           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus        93 KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~--~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      +++|+.+.    ++++|..|.+++.|+++|.|++||+|+++..   .   +..  .+.++..+|+...+++.|.+.|.
T Consensus        15 ~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing---~---~v~~~~~~~~~~~l~~~~~~v~l~v~r~   82 (92)
T 3cyy_A           15 EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKING---T---VTENMSLTDAKTLIERSKGKLKMVVQRD   82 (92)
T ss_dssp             SCCCEEEE----EEEEEEEECTTCHHHHSCCCCTTCEEEEETT---E---ECTTCCHHHHHHHHHTTTTEEEEEEEC-
T ss_pred             CCCCEEEe----CCEEEEEECCCChHHhcCCCCCCCEEEEECC---E---ECCCCCHHHHHHHHHcCCCcEEEEEEeC
Confidence            36788775    6899999999999999998999999999763   2   223  55566778877667889999884

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=97.97  E-value=2e-05  Score=60.02  Aligned_cols=74  Identities=22%  Similarity=0.382  Sum_probs=55.3

Q ss_pred             CCceeEEeee--CCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783           93 QPYGLKFAKG--RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus        93 KPlGl~~~~~--~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      .++|+.+...  .++  +++|..|.+++.|+++| |++||+|+++...   .+ ....+.++..+|+....++.|.+.|.
T Consensus        14 ~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v-~~~~~~~~~~~l~~~g~~v~l~v~r~   88 (96)
T 2v90_A           14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGE---SV-EGLGHEETVSRIQGQGSCVSLTVVDP   88 (96)
T ss_dssp             TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTE---EC-TTCCHHHHHHHHHTTTTEEEEEEECC
T ss_pred             CcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCEEEEEEECC
Confidence            4788888774  222  79999999999999999 9999999997642   11 11225567777877667889999986


Q ss_pred             cCC
Q 022783          169 YGK  171 (292)
Q Consensus       169 ~~~  171 (292)
                      -..
T Consensus        89 ~~~   91 (96)
T 2v90_A           89 EAD   91 (96)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            543

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=97.95  E-value=1.2e-05  Score=64.50  Aligned_cols=81  Identities=19%  Similarity=0.314  Sum_probs=61.3

Q ss_pred             ceEEEEec----CCceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhcc
Q 022783           85 EEYEVEIE----QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQR  157 (292)
Q Consensus        85 ~~~~v~l~----KPlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r  157 (292)
                      +.++|+|.    ..+|+.+....+ ++++|..|.+++.|+++|.|++||+|+++...      +...  +.++...|+..
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~------~v~~~~~~~~~~~l~~~   81 (127)
T 1b8q_A            8 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDR------PLVDLSYDSALEVLRGI   81 (127)
T ss_dssp             CSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTE------ECSSSCHHHHHHHHHSC
T ss_pred             ceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHhC
Confidence            45677773    468888887644 59999999999999999966999999998632      2233  56677788765


Q ss_pred             C-CceEEEEeeccCC
Q 022783          158 V-GPLLMKMQKRYGK  171 (292)
Q Consensus       158 ~-g~v~l~l~r~~~~  171 (292)
                      . .++.|.+.|.-..
T Consensus        82 ~g~~v~l~v~R~g~~   96 (127)
T 1b8q_A           82 ASETHVVLILRGPEG   96 (127)
T ss_dssp             CSSCEEEEEECCCCS
T ss_pred             CCCeEEEEEEeCCce
Confidence            4 5789999986544

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=97.95  E-value=2.4e-05  Score=58.39  Aligned_cols=77  Identities=22%  Similarity=0.385  Sum_probs=55.0

Q ss_pred             EEEEecC----CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           87 YEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      ++|+|.|    ++|+.+..+.  +.+++|..|.|++.|++++.+++||+|+++..   ..+ ......++...|+...++
T Consensus         4 ~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng---~~v-~~~~~~~~~~~~~~~~~~   79 (87)
T 4e34_A            4 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNG---VNL-RDTKHKEAVTILSQQRGE   79 (87)
T ss_dssp             EEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETT---EEC-TTCCHHHHHHHHHHCCSE
T ss_pred             EEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHcCCCe
Confidence            5566655    6888887653  33799999999999999533999999999863   222 112445666777766667


Q ss_pred             eEEEEee
Q 022783          161 LLMKMQK  167 (292)
Q Consensus       161 v~l~l~r  167 (292)
                      +.|++++
T Consensus        80 v~l~v~~   86 (87)
T 4e34_A           80 IEFEVVY   86 (87)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888764

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=97.94  E-value=3.6e-05  Score=60.12  Aligned_cols=78  Identities=18%  Similarity=0.343  Sum_probs=56.2

Q ss_pred             EEEEec----CCceeEEeeeCC--------------CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchh
Q 022783           87 YEVEIE----QPYGLKFAKGRD--------------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (292)
Q Consensus        87 ~~v~l~----KPlGl~~~~~~~--------------G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g  148 (292)
                      ..|+|.    .++|+.+..+.+              .+++|..|.+++.|+++| |++||+|+++...   .+-. ....
T Consensus         9 ~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v~~-~~~~   83 (109)
T 1q3o_A            9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQ---NVVK-VGHR   83 (109)
T ss_dssp             EEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECTT-CCHH
T ss_pred             EEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCC-CCHH
Confidence            456664    478999877643              179999999999999999 9999999998642   1111 1235


Q ss_pred             hHHHHhhccCCceEEEEeecc
Q 022783          149 RTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       149 ~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      ++...|+.....+.|++.|.-
T Consensus        84 ~~~~~l~~~~~~v~l~v~~~~  104 (109)
T 1q3o_A           84 QVVNMIRQGGNTLMVKVVMVT  104 (109)
T ss_dssp             HHHHHHHHTTTEEEEEEEEEE
T ss_pred             HHHHHHHhCCCEEEEEEEECC
Confidence            666777765667888887753

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=1.5e-05  Score=60.78  Aligned_cols=77  Identities=17%  Similarity=0.222  Sum_probs=54.7

Q ss_pred             EEEEe--cCCceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           87 YEVEI--EQPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        87 ~~v~l--~KPlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      +.|+|  +.|+|+.+..+.  +.+++|..|.|++.|+++| |++||+|+++...   .+-.. .+-.+...++....++.
T Consensus        10 ~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~~~~~g~~v~   84 (94)
T 2eeg_A           10 HSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGE---STELM-THLEAQNRIKGCHDHLT   84 (94)
T ss_dssp             EEEEECCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTT-CCTTCEEEEETTE---ETTTC-CHHHHHHHHHTCCSCEE
T ss_pred             EEEEEeCCCccCEEEECccCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCeEE
Confidence            44444  456778776654  4589999999999999999 9999999998632   22111 23455566666556789


Q ss_pred             EEEeec
Q 022783          163 MKMQKR  168 (292)
Q Consensus       163 l~l~r~  168 (292)
                      |++.|.
T Consensus        85 l~v~R~   90 (94)
T 2eeg_A           85 LSVSSG   90 (94)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999884

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=97.93  E-value=3.5e-05  Score=60.81  Aligned_cols=78  Identities=22%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             eEEEEec----CCceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           86 EYEVEIE----QPYGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        86 ~~~v~l~----KPlGl~~~~~-~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      .|.+.|.    +.+|+.+.-. ...+++|..|.+++.|+++| |++||+|+++..   ..+-. ..+.++...|+....+
T Consensus        14 p~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing---~~v~~-~~~~~~~~~l~~~g~~   88 (114)
T 2edz_A           14 PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRING---VFVDK-EEHAQVVELVRKSGNS   88 (114)
T ss_dssp             CEEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGT-CCTTCEEEEESS---SBCSS-SCHHHHHHHHHHTCSE
T ss_pred             CEEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECC---EECCC-CCHHHHHHHHHcCCCE
Confidence            3555553    4688887654 34589999999999999999 999999999863   22222 2345667777765678


Q ss_pred             eEEEEeec
Q 022783          161 LLMKMQKR  168 (292)
Q Consensus       161 v~l~l~r~  168 (292)
                      |.|++.|.
T Consensus        89 v~l~v~R~   96 (114)
T 2edz_A           89 VTLLVLDG   96 (114)
T ss_dssp             EEEEEECH
T ss_pred             EEEEEEEC
Confidence            89999884

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.93  E-value=1.7e-05  Score=78.93  Aligned_cols=83  Identities=6%  Similarity=-0.043  Sum_probs=70.5

Q ss_pred             HhhHHHHHhhHhHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 022783          203 QNYMKKKEQKERREQDL-REGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-QVKAGLSALEDA  278 (292)
Q Consensus       203 a~Y~kkk~lk~~~~~~~-n~G~~L~k~g--dYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg-q~eeALe~LekA  278 (292)
                      ..|.+.....++.++++ .++..+.+.+  +|++|++.++++|+++|.+   ..+|++++.++.++| .++++++.++++
T Consensus        94 ~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~  170 (567)
T 1dce_A           94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN---FHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc---ccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            36666666666667765 8999999999  7799999999999999984   457999999999999 899999999999


Q ss_pred             HHhCccChhh
Q 022783          279 LLAGYEDFKV  288 (292)
Q Consensus       279 IelG~~Df~~  288 (292)
                      |+..+.|+..
T Consensus       171 I~~~p~n~sa  180 (567)
T 1dce_A          171 ITRNFSNYSS  180 (567)
T ss_dssp             TTTTCCCHHH
T ss_pred             HHHCCCCccH
Confidence            9999887653

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=97.92  E-value=1.4e-05  Score=61.90  Aligned_cols=71  Identities=24%  Similarity=0.369  Sum_probs=52.9

Q ss_pred             CCceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783           93 QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus        93 KPlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      .++|+.+.-..+ ++++|..|.|++.|+++| +++||+|+++..   ..+- .....++...|+....+|.|.+.|.
T Consensus        13 ~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing---~~v~-~~~~~~~~~~l~~~g~~v~l~v~r~   84 (106)
T 3ngh_A           13 QNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRING---VFVD-KEEHAQVVELVRKSGNSVTLLVLDG   84 (106)
T ss_dssp             CCCCCEEECCTTCCSCEEECCCTTSHHHHTT-CCTTCEEEEETT---EECT-TSCHHHHHHHHHHTTTEEEEEEECH
T ss_pred             CeeCEEEEEEeCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECC---EECC-CCCHHHHHHHHHhCCCEEEEEEEEC
Confidence            367888876543 489999999999999999 999999999863   2221 1123366677776667889999874

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=1.4e-05  Score=61.94  Aligned_cols=80  Identities=14%  Similarity=0.305  Sum_probs=58.5

Q ss_pred             EEEEecC---CceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           87 YEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        87 ~~v~l~K---PlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      ..|+|.|   ++|+.+.... +.+++|..|.+++.|+++| |++||+|+.+...   .+ ....+.++...++.....+.
T Consensus        10 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v-~~~~~~~~~~~~~~~~~~v~   84 (106)
T 2eei_A           10 RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGE---NV-EDASHEEVVEKVKKSGSRVM   84 (106)
T ss_dssp             EEEEEECCSSSCSCCEECCSSCCSCEECCCCTTSHHHHHT-CCSSEEEEEETTE---EC-TTCCHHHHHHHHHHHCSEEE
T ss_pred             EEEEEEECCCCCCEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCCeEE
Confidence            4566665   6888886543 4589999999999999999 9999999997631   11 12234456667766567889


Q ss_pred             EEEeeccCC
Q 022783          163 MKMQKRYGK  171 (292)
Q Consensus       163 l~l~r~~~~  171 (292)
                      |.+.|+-..
T Consensus        85 l~v~r~~~~   93 (106)
T 2eei_A           85 FLLVDKETD   93 (106)
T ss_dssp             EEECCTTTS
T ss_pred             EEEEcCchh
Confidence            999887654

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=97.92  E-value=3.8e-05  Score=65.55  Aligned_cols=84  Identities=14%  Similarity=0.241  Sum_probs=63.0

Q ss_pred             ceEEEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           85 EEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      ..++|++.|    .||+.+.. .+.+++|..|.++|.|+++|.|++||+|+++...   .|-. ...-++...++...++
T Consensus       113 ~~~~v~l~~~~~~~lG~~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~---~v~~-~~~~~~~~~l~~~~~~  187 (206)
T 3r0h_A          113 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD---ALEG-LPFQVCYALFKGANGK  187 (206)
T ss_dssp             EEEEEEEECCTTCCCCEEEEE-CSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTE---ECTT-CCHHHHHHHHHTCCSE
T ss_pred             cEEEEEEecCCCCccCeEEEc-CCceEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCCe
Confidence            456677643    57888885 3467999999999999999999999999998742   1211 1234567788877889


Q ss_pred             eEEEEeeccCCcc
Q 022783          161 LLMKMQKRYGKME  173 (292)
Q Consensus       161 v~l~l~r~~~~~~  173 (292)
                      +.|.+.|+....+
T Consensus       188 v~L~V~R~~~~~~  200 (206)
T 3r0h_A          188 VSMEVTRPKPTLR  200 (206)
T ss_dssp             EEEEEEEECCCCC
T ss_pred             EEEEEEeCCCCCC
Confidence            9999999776544

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=97.92  E-value=4e-05  Score=65.38  Aligned_cols=82  Identities=13%  Similarity=0.219  Sum_probs=60.5

Q ss_pred             cceEEEEecC---CceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCccc--ccccchhhHHHHh
Q 022783           84 YEEYEVEIEQ---PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMYTI  154 (292)
Q Consensus        84 ~~~~~v~l~K---PlGl~~~~~~~----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~--w~a~~~g~~~~ai  154 (292)
                      -++++|+|.|   +||+.+..+.+    .+++|..|.|++-|+++|.|++||+|+++..   ..+  |... .-.++.++
T Consensus        17 ~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng---~~v~~~~~~-~~~~~~~~   92 (206)
T 3r0h_A           17 NKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDING---TPIHVGSMT-TLKVHQLF   92 (206)
T ss_dssp             TSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETT---EECCGGGSC-HHHHHHHH
T ss_pred             CCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECC---EEcCCCccC-HHHHHHHH
Confidence            3567788855   89999976543    3799999999999999999999999999863   222  3233 23455677


Q ss_pred             hccCCc-eEEEEeecc
Q 022783          155 RQRVGP-LLMKMQKRY  169 (292)
Q Consensus       155 ~~r~g~-v~l~l~r~~  169 (292)
                      +...+. +.|++.|.-
T Consensus        93 ~~~~~~~v~l~v~R~~  108 (206)
T 3r0h_A           93 HTTYEKAVTLTVFRAD  108 (206)
T ss_dssp             HSCCSSEEEEEEECCS
T ss_pred             HhcCCCceEEEEEecc
Confidence            766666 888888753

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.91  E-value=1.4e-05  Score=60.92  Aligned_cols=77  Identities=21%  Similarity=0.431  Sum_probs=57.4

Q ss_pred             EEEEe--cCCceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           87 YEVEI--EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        87 ~~v~l--~KPlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      +.|++  ..+||+.+..+.+  .+++|..|.+++.|+++| |++||+|+.+-.   ..+-. ..+.++...|+....++.
T Consensus         8 ~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing---~~v~~-~~~~~~~~~l~~~~~~v~   82 (94)
T 1vb7_A            8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAING---QSAEN-MLHAEAQSKIRQSASPLR   82 (94)
T ss_dssp             EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETT---EECTT-CCHHHHHHHHHTCCSSEE
T ss_pred             EEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCC-CCCCCEEEEECC---EECCC-CCHHHHHHHHHhCCCcEE
Confidence            44554  4568888887644  389999999999999999 999999999763   11111 112566778876668999


Q ss_pred             EEEeec
Q 022783          163 MKMQKR  168 (292)
Q Consensus       163 l~l~r~  168 (292)
                      |++.|.
T Consensus        83 l~v~R~   88 (94)
T 1vb7_A           83 LQLDRS   88 (94)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            999985

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.91  E-value=2.6e-05  Score=75.15  Aligned_cols=63  Identities=11%  Similarity=-0.143  Sum_probs=57.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHc-----CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLG-----SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALe-----ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      -++|.+|..+|+|++|+..|+++|+     +-|+.++.+..++|+|..|..+|++++|+..+++|+++
T Consensus       333 ~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          333 DCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4899999999999999999999995     45666678889999999999999999999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.90  E-value=1.2e-05  Score=71.26  Aligned_cols=65  Identities=15%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ...+..|..+...|++++|+..|+++|+.+|++   ..+++++|.+|..+|++++|+..++++++...
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p  182 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ  182 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence            445799999999999999999999999999974   45799999999999999999999999877654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.90  E-value=1.8e-05  Score=59.57  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       232 eeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ++|++.|+++++.+|++   ..+|+++|.+|..+|++++|+..|++|+++..++.
T Consensus         2 ~~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   53 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS   53 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH
Confidence            46899999999999974   46899999999999999999999999999987643

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=97.90  E-value=1.4e-05  Score=60.51  Aligned_cols=78  Identities=18%  Similarity=0.303  Sum_probs=56.5

Q ss_pred             EEEEecC---CceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           87 YEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        87 ~~v~l~K---PlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      ..|+|.|   ++|+.+.... ..+++|..|.|++.|+++| |++||+|+++...    -.....+.++..+|+....++.
T Consensus         5 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~----~v~~~~~~~~~~~l~~~g~~v~   79 (91)
T 2vsp_A            5 KLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGV----NVLDEPYEKVVDRIQSSGKNVT   79 (91)
T ss_dssp             EEEEEECBTTBTSCCCBCCTTCSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTE----ECTTSCHHHHHHHHTTSCSEEE
T ss_pred             EEEEEEeCCCcccEEEEeccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE----ECCCCCHHHHHHHHHcCCCEEE
Confidence            4566665   5788887643 3589999999999999999 9999999997631    1111255677778886667889


Q ss_pred             EEEeecc
Q 022783          163 MKMQKRY  169 (292)
Q Consensus       163 l~l~r~~  169 (292)
                      |++.|.-
T Consensus        80 l~v~r~~   86 (91)
T 2vsp_A           80 LLVCGKK   86 (91)
T ss_dssp             EEEEC--
T ss_pred             EEEEeCC
Confidence            9998853

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=97.90  E-value=4.1e-05  Score=61.06  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             EEEEecC----CceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           87 YEVEIEQ----PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      -+|+|.|    .+|+.+..+.+.  +++|..|.+++.|+++|.|++||+|+++..   ..+ ....+.++...|+...+.
T Consensus        26 ~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing---~~v-~~~~~~~~~~~l~~~~~~  101 (114)
T 2gzv_A           26 GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNG---RSI-KGKTKVEVAKMIQEVKGE  101 (114)
T ss_dssp             EEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETT---EEC-TTCCHHHHHHHHHHCCSE
T ss_pred             EEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHcCCCe
Confidence            3455543    389999876543  799999999999999999999999999763   222 113455677788766677


Q ss_pred             eEEEEeec
Q 022783          161 LLMKMQKR  168 (292)
Q Consensus       161 v~l~l~r~  168 (292)
                      +.|++.+.
T Consensus       102 v~l~v~~~  109 (114)
T 2gzv_A          102 VTIHYNKL  109 (114)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEec
Confidence            88888764

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=97.90  E-value=6.3e-05  Score=56.31  Aligned_cols=77  Identities=16%  Similarity=0.303  Sum_probs=52.5

Q ss_pred             ceEEEEecC---CceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-C
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-V  158 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~  158 (292)
                      +.++|+|.|   .+|+.+....+ ++++|..| +++.|+ +| |++||+|+++..   ..+-. ..+.++...|+. . .
T Consensus         3 ~~~~v~l~k~~~g~G~~~~~~~~~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng---~~v~~-~~~~~~~~~l~~~~~g   75 (88)
T 3bpu_A            3 ELITVHIVKGPMGFGFTIADSPGGGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNK---KNVQA-LTHNQVVDMLVESPKG   75 (88)
T ss_dssp             EEEEEEEECBTTBSSCEEEECTTSSSEEEEEC-CC--CC-TT-CCTTCEEEEETT---EECTT-SCHHHHHHHHHTSCTT
T ss_pred             cEEEEEEEcCCCceeEEEEecCCCCcEEEEEe-cCChhH-hC-CCCCCEEEEECC---EEcCC-CCHHHHHHHHHhCCCC
Confidence            457788866   58889887644 58888887 899888 77 999999999863   22211 113566677773 3 3


Q ss_pred             CceEEEEeec
Q 022783          159 GPLLMKMQKR  168 (292)
Q Consensus       159 g~v~l~l~r~  168 (292)
                      .++.|++.|.
T Consensus        76 ~~v~l~v~R~   85 (88)
T 3bpu_A           76 SEVTLLVQRQ   85 (88)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEeC
Confidence            4788888874

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.89  E-value=6.3e-05  Score=69.72  Aligned_cols=112  Identities=7%  Similarity=-0.134  Sum_probs=87.3

Q ss_pred             cCCccccccccHHH-HHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHcC
Q 022783          169 YGKMEQTGELSEKE-IIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG--KYEVAREKFESVLGS  244 (292)
Q Consensus       169 ~~~~~~~~~~~e~~-~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~g--dYeeAIe~fekALel  244 (292)
                      .-++-...++.+.. .+++.+..|..+..    ....+.+...+.+..+.++ .+|.++..++  +|++||+.++++|..
T Consensus        23 ~~~i~y~~~y~~~~~~~~a~~~~~e~s~~----aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~   98 (306)
T 3dra_A           23 ICQILYDEDYKQIMGLLLALMKAEEYSER----ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD   98 (306)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHTTCCSHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             ceeeeeCHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence            33444555666665 47888888877631    2345555555555556654 8999999999  999999999999999


Q ss_pred             CCCccchhHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHhCccChh
Q 022783          245 KPTPEESSVASYNVACCY----SKL---NQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       245 dP~~~d~a~a~YN~Accy----akL---gq~eeALe~LekAIelG~~Df~  287 (292)
                      +|++   ..+|+++..++    ..+   ++++++++.|+++++....+|.
T Consensus        99 nPk~---y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~  145 (306)
T 3dra_A           99 NEKN---YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH  145 (306)
T ss_dssp             CTTC---CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH
T ss_pred             Cccc---HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH
Confidence            9984   46799999999    888   8999999999999999888774

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=97.88  E-value=3e-05  Score=59.28  Aligned_cols=73  Identities=18%  Similarity=0.429  Sum_probs=54.3

Q ss_pred             EEEecC---CceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhccCCce
Q 022783           88 EVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGPL  161 (292)
Q Consensus        88 ~v~l~K---PlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r~g~v  161 (292)
                      .|+|.|   .+|+.+..+. .++++|..|.+++.|+++| |++||+|+++...      +...  +.++..+|+...+.+
T Consensus        12 ~~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~~   84 (98)
T 2jxo_A           12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV------CMEGKQHGDVVSAIRAGGDET   84 (98)
T ss_dssp             EEEEECTTTCCCEEEECCCSSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHTTTTEE
T ss_pred             EEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCcE
Confidence            445554   4888887654 3599999999999999999 9999999997632      2233  667778888766655


Q ss_pred             -EEEEee
Q 022783          162 -LMKMQK  167 (292)
Q Consensus       162 -~l~l~r  167 (292)
                       .|++.|
T Consensus        85 ~~l~v~R   91 (98)
T 2jxo_A           85 KLLVVDR   91 (98)
T ss_dssp             EEEECCH
T ss_pred             EEEEEEC
Confidence             477766

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.88  E-value=5.6e-05  Score=71.13  Aligned_cols=93  Identities=16%  Similarity=0.124  Sum_probs=69.2

Q ss_pred             Hhhccccchhh---HHHHHHH-hhHHHHHhhHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHH
Q 022783          186 AERNSGVISNR---VREIQMQ-NYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYN  257 (292)
Q Consensus       186 a~rN~GvI~~~---l~eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN  257 (292)
                      +.++.|.+...   .+..+++ .++++..........+++|..+..    .+++++|+.+|++|++..+     ..+++|
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~  404 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL-----SAAQVQ  404 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----HHHHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-----HHHHHH
Confidence            34455555432   2244444 333333333445567799999999    8999999999999998753     457999


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHHhCc
Q 022783          258 VACCYSK----LNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       258 ~Accyak----Lgq~eeALe~LekAIelG~  283 (292)
                      ++.+|..    .+++++|+..+++|++.|.
T Consensus       405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            9999999    8999999999999999984

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=97.88  E-value=3.5e-05  Score=59.77  Aligned_cols=79  Identities=19%  Similarity=0.327  Sum_probs=57.2

Q ss_pred             ceEEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCcccccC-cccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGM-FQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~-i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      ....|+|.|    ++|+.+..+.+  .+++|..|.|++.|+++|. |++||+|+.+...   .+-. ...-++...|+..
T Consensus        17 ~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~---~v~~-~~~~~~~~~i~~~   92 (107)
T 3nfk_A           17 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR---DIAE-HTHDQVVLFIKAS   92 (107)
T ss_dssp             CCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTE---ECTT-CCHHHHHHHHHCG
T ss_pred             CEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCE---ECCC-CCHHHHHHHHHhc
Confidence            446777765    78888876544  3799999999999999995 9999999998632   2211 1223556677655


Q ss_pred             C----CceEEEEee
Q 022783          158 V----GPLLMKMQK  167 (292)
Q Consensus       158 ~----g~v~l~l~r  167 (292)
                      .    +.|.|+++|
T Consensus        93 ~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           93 CERHSGELMLLVRP  106 (107)
T ss_dssp             GGSBTTBEEEEEEC
T ss_pred             cccCCcEEEEEEEc
Confidence            4    489999887

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=97.87  E-value=3.7e-05  Score=58.23  Aligned_cols=76  Identities=18%  Similarity=0.302  Sum_probs=53.8

Q ss_pred             EEEecCC---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEE
Q 022783           88 EVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK  164 (292)
Q Consensus        88 ~v~l~KP---lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~  164 (292)
                      .|+|.|.   +|+.+..  +.+++|..|.+++.|+++| |++||+|+.+...   .+ ....+.++...|+...+.+.|.
T Consensus         6 ~v~l~~~~~g~G~~l~~--~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v-~~~~~~~~~~~l~~~~~~v~l~   78 (91)
T 2f5y_A            6 QITIPRGKDGFGFTICC--DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNER---PV-EHWKCVELAHEIRSCPSEIILL   78 (91)
T ss_dssp             EEEEECBTTBTSEEEEC--SSSCEEEEECTTSHHHHHT-CCTTCEEEEETTE---EC-TTCCHHHHHHHHHTCSSEEEEE
T ss_pred             EEEEEeCCCCccEEEec--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCeEEEE
Confidence            4555544   6666643  4579999999999999999 9999999998642   11 1113445667777656678999


Q ss_pred             EeeccC
Q 022783          165 MQKRYG  170 (292)
Q Consensus       165 l~r~~~  170 (292)
                      +.|...
T Consensus        79 v~R~~~   84 (91)
T 2f5y_A           79 VWRMVP   84 (91)
T ss_dssp             EEECC-
T ss_pred             EEeCCC
Confidence            998644

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=97.87  E-value=2.7e-05  Score=67.00  Aligned_cols=78  Identities=24%  Similarity=0.411  Sum_probs=59.5

Q ss_pred             ceEEEEecC----CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      +..+|+|.|    ++|+.+..+.  +++++|..|.|||.|+++| +++||+|+++...    -.....+..+...|+. .
T Consensus        84 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~----~v~~~~~~~~~~~l~~-~  157 (192)
T 3k1r_A           84 KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGY----SISSCTHEEVINLIRT-E  157 (192)
T ss_dssp             SCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTE----ECTTCCHHHHHHHHTS-S
T ss_pred             ceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE----ECCCCCHHHHHHHHcC-C
Confidence            446677765    5888887653  4489999999999999999 9999999998631    1112225567788888 7


Q ss_pred             CceEEEEeec
Q 022783          159 GPLLMKMQKR  168 (292)
Q Consensus       159 g~v~l~l~r~  168 (292)
                      ++|.|++.|.
T Consensus       158 ~~v~l~v~r~  167 (192)
T 3k1r_A          158 KTVSIKVRHI  167 (192)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEC
Confidence            8899999885

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.87  E-value=6e-05  Score=58.10  Aligned_cols=78  Identities=12%  Similarity=0.173  Sum_probs=56.2

Q ss_pred             cceEEEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--C
Q 022783           84 YEEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--V  158 (292)
Q Consensus        84 ~~~~~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~  158 (292)
                      .+.++|+|.|   .+|+.+....+ +++|..|.++  |+++| |++||+|+.+..   ..+ ....+.++...|+..  .
T Consensus         9 ~~~~~v~l~~~~~g~G~~i~~~~~-Gv~V~~v~~~--a~~aG-L~~GD~I~~vng---~~v-~~~~~~~~~~~l~~~~~g   80 (96)
T 1ujv_A            9 AELMTLTIVKGAQGFGFTIADSPT-GQRVKQILDI--QGCPG-LCEGDLIVEINQ---QNV-QNLSHTEVVDILKDCPIG   80 (96)
T ss_dssp             CCCEEEEEECCSSSSSEEEEEETT-EEEEEEESCG--GGSTT-CCSSCEEEEETT---EEC-SSCCHHHHHHHHHHSCTT
T ss_pred             ceEEEEEEEeCCCceeEEEEcCCC-CEEEEEEecc--cccCC-CCCCCEEEEECC---EEC-CCCCHHHHHHHHHcCCCC
Confidence            3568888876   58888865443 6999999994  77787 999999999863   222 111335677888864  4


Q ss_pred             CceEEEEeecc
Q 022783          159 GPLLMKMQKRY  169 (292)
Q Consensus       159 g~v~l~l~r~~  169 (292)
                      .+|.|++.|.-
T Consensus        81 ~~v~l~v~R~g   91 (96)
T 1ujv_A           81 SETSLIIHRGS   91 (96)
T ss_dssp             SEEEEEEECCS
T ss_pred             CEEEEEEEECC
Confidence            67899999854

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=97.86  E-value=3.4e-05  Score=57.89  Aligned_cols=69  Identities=17%  Similarity=0.361  Sum_probs=50.2

Q ss_pred             CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc--cCCceEEEEeec
Q 022783           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKR  168 (292)
Q Consensus        94 PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~--r~g~v~l~l~r~  168 (292)
                      .+|+.+... +++++|..|.|++.|+++| |++||+|+++-.   ..+ ....+..+..+|+.  ...++.|++.|.
T Consensus        18 ~lG~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing---~~v-~~~~~~~~~~~l~~~~~g~~v~l~v~R~   88 (90)
T 2eaq_A           18 DFGFTIKWD-IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINN---TKF-SYNDSKEWEEAMAKAQETGHLVMDVRRY   88 (90)
T ss_dssp             CCSEEEEEE-TTEEEEEEECTTSHHHHTT-CCTTCEEEEETT---EEC-CTTCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccEEEEec-CCCEEEEEECCCChHHHcC-CCCCCEEEEECC---EEc-cCCCHHHHHHHHHhcCCCCEEEEEEEeC
Confidence            489888754 5689999999999999999 999999999763   222 01234445556653  245788988874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.86  E-value=5.6e-05  Score=75.16  Aligned_cols=82  Identities=13%  Similarity=-0.031  Sum_probs=69.9

Q ss_pred             HhhHHHHHhhHhHHHHH-HHHHHHHHcCC----------HHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC--CHH
Q 022783          203 QNYMKKKEQKERREQDL-REGLQLYRTGK----------YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN--QVK  269 (292)
Q Consensus       203 a~Y~kkk~lk~~~~~~~-n~G~~L~k~gd----------YeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg--q~e  269 (292)
                      ..|.+..+..+..+.++ .++.++...++          |++|++.|+++|+.+|++   ..+|++++-++.+++  +++
T Consensus        50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---y~aW~hR~w~l~~l~~~~~~  126 (567)
T 1dce_A           50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---YGTWHHRCWLLSRLPEPNWA  126 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccccHH
Confidence            35656666666556665 88999998888          999999999999999984   568999999999999  779


Q ss_pred             HHHHHHHHHHHhCccChh
Q 022783          270 AGLSALEDALLAGYEDFK  287 (292)
Q Consensus       270 eALe~LekAIelG~~Df~  287 (292)
                      +|++.|++||++..++|.
T Consensus       127 ~el~~~~k~l~~d~~N~~  144 (567)
T 1dce_A          127 RELELCARFLEADERNFH  144 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHhhcccccc
Confidence            999999999999888764

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.85  E-value=6.3e-05  Score=59.36  Aligned_cols=78  Identities=19%  Similarity=0.365  Sum_probs=55.2

Q ss_pred             EEEEec--CCceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc---
Q 022783           87 YEVEIE--QPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR---  157 (292)
Q Consensus        87 ~~v~l~--KPlGl~~~~~~----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r---  157 (292)
                      ..|+|.  .+||+.+.-+.    +.++||..|.++|.|+++|.|++||+|+++-..   .+- ...+.++...|+..   
T Consensus        17 ~~v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~---~~~-~~~~~~~~~~l~~~~~r   92 (109)
T 1wi4_A           17 RVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKE---SMI-GVSFEEAKSIITRAKLR   92 (109)
T ss_dssp             EEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTS---CCT-TCCHHHHHHHHHHSCCS
T ss_pred             EEEEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHccccC
Confidence            444554  46777777542    227999999999999999999999999998742   221 12355677777744   


Q ss_pred             -CCceEEEEeec
Q 022783          158 -VGPLLMKMQKR  168 (292)
Q Consensus       158 -~g~v~l~l~r~  168 (292)
                       ..++.|.+.|.
T Consensus        93 ~~~~~~l~v~R~  104 (109)
T 1wi4_A           93 SESPWEIAFIRS  104 (109)
T ss_dssp             SSSCEEEEEECC
T ss_pred             CCceEEEEEEeC
Confidence             35778888874

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=97.85  E-value=5.3e-05  Score=63.45  Aligned_cols=82  Identities=22%  Similarity=0.416  Sum_probs=58.0

Q ss_pred             cceEEEEec---CCceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783           84 YEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (292)
Q Consensus        84 ~~~~~v~l~---KPlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a  153 (292)
                      ++..+|+|.   .+||+.+.-+.       +.+++|..|.|++-|+++|.|++||+|+++..   ..+-.... -..+.+
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng---~~v~~~~~-~~~~~~   79 (196)
T 3gsl_A            4 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE---VDVREVTH-SAAVEA   79 (196)
T ss_dssp             EEEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETT---EECTTCCH-HHHHHH
T ss_pred             cEEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECC---EECCCCCH-HHHHHH
Confidence            345566666   58999998764       45999999999999999999999999999863   22221111 133445


Q ss_pred             hhccCCceEEEEeecc
Q 022783          154 IRQRVGPLLMKMQKRY  169 (292)
Q Consensus       154 i~~r~g~v~l~l~r~~  169 (292)
                      ++.-..++.|++.|..
T Consensus        80 ~~~~g~~v~l~v~r~~   95 (196)
T 3gsl_A           80 LKEAGSIVRLYVMRRK   95 (196)
T ss_dssp             HHTSCSEEEEEEEEEC
T ss_pred             HHhCCCcEEEEEEecC
Confidence            5555567788887754

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.84  E-value=7.6e-05  Score=59.61  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=57.0

Q ss_pred             eEEEEecCCceeEEeeeC---CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc----C
Q 022783           86 EYEVEIEQPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR----V  158 (292)
Q Consensus        86 ~~~v~l~KPlGl~~~~~~---~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r----~  158 (292)
                      .+.+.-...+|+.+..+.   .|.++|..|.++|.|+++|.|++||+|+++..   ..+ ....+.++...|+..    .
T Consensus        21 ~~~~~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing---~~v-~~~~~~~~~~~l~~~~~~~g   96 (118)
T 1v6b_A           21 LLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAING---KIV-TDYTLAEAEAALQKAWNQGG   96 (118)
T ss_dssp             EEEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESS---CBC-TTCBHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHHhhhcCC
Confidence            344444567888887653   35799999999999999955999999999763   222 111244555556533    5


Q ss_pred             CceEEEEeeccCC
Q 022783          159 GPLLMKMQKRYGK  171 (292)
Q Consensus       159 g~v~l~l~r~~~~  171 (292)
                      .+|.|++.|....
T Consensus        97 ~~v~l~v~r~~~~  109 (118)
T 1v6b_A           97 DWIDLVVAVCPPK  109 (118)
T ss_dssp             SEEEEEEECCCSC
T ss_pred             CeEEEEEEeCCcc
Confidence            5799999996544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.84  E-value=5e-06  Score=60.66  Aligned_cols=70  Identities=11%  Similarity=0.125  Sum_probs=51.4

Q ss_pred             hhHHHHHhhHhH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          204 NYMKKKEQKERR-E-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       204 ~Y~kkk~lk~~~-~-~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .|.+.....+.. . -.+++|..++..|+|++|++.|+++++++|++   ..+|+|        +.+.+|+..++++++.
T Consensus        22 ~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~--------~~~~~a~~~~~~~~~~   90 (99)
T 2kc7_A           22 ALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS---PALQAR--------KMVMDILNFYNKDMYN   90 (99)
T ss_dssp             HHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---THHHHH--------HHHHHHHHHHCCTTHH
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHH--------HHHHHHHHHHHHHhcc
Confidence            344443333333 3 45699999999999999999999999999974   334554        6678888888888766


Q ss_pred             Ccc
Q 022783          282 GYE  284 (292)
Q Consensus       282 G~~  284 (292)
                      ..+
T Consensus        91 ~p~   93 (99)
T 2kc7_A           91 QLE   93 (99)
T ss_dssp             HHC
T ss_pred             Ccc
Confidence            543

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.80  E-value=8.2e-05  Score=59.78  Aligned_cols=80  Identities=19%  Similarity=0.401  Sum_probs=56.8

Q ss_pred             EEEEec--CCceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        87 ~~v~l~--KPlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      +.|++.  .++|+.+....+  .+++|..|.+++.|+++| |++||+|+++..   ..+-.... -.++..++. ..++.
T Consensus        24 v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng---~~v~~~~~-~~~~~~~~~-~~~v~   97 (128)
T 1uf1_A           24 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNG---RSFLNILH-DEAVRLLKS-SRHLI   97 (128)
T ss_dssp             EEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETT---EECSSCCH-HHHHHHHTT-CSEEE
T ss_pred             EEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECC---EECCCCCH-HHHHHHHhc-CCeEE
Confidence            445544  579999877543  389999999999999999 999999999863   22222212 345566665 46899


Q ss_pred             EEEeeccCCc
Q 022783          163 MKMQKRYGKM  172 (292)
Q Consensus       163 l~l~r~~~~~  172 (292)
                      |.+.|.--..
T Consensus        98 l~v~R~g~~~  107 (128)
T 1uf1_A           98 LTVKDVGRLP  107 (128)
T ss_dssp             EEEECCSCCS
T ss_pred             EEEEECCccc
Confidence            9998854443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.79  E-value=6.1e-05  Score=69.78  Aligned_cols=66  Identities=12%  Similarity=0.088  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSK--PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeld--P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      -.+++|.++..+|++++|+.+|++++.-.  |.  ....++||+|.|+.++|+.++|...|++++....+
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~--~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEA--CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            35799999999999999999999998543  43  24557999999999999999999999999998765

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=97.79  E-value=3e-05  Score=60.11  Aligned_cols=72  Identities=22%  Similarity=0.286  Sum_probs=53.9

Q ss_pred             EEEEecC----CceeEEeee---------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCccccccc--chhhHH
Q 022783           87 YEVEIEQ----PYGLKFAKG---------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTM  151 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~---------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~--~~g~~~  151 (292)
                      .+|+|.|    ++|+.+...         .+.+++|..|.+++.|+++| |++||+|+.+-..      +..  .+.++.
T Consensus        17 ~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~------~v~~~~~~~~~   89 (104)
T 2z17_A           17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGV------STEGFTYKQVV   89 (104)
T ss_dssp             CEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTE------ECTTCCHHHHH
T ss_pred             eEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE------EcCCCCHHHHH
Confidence            4555665    589998762         23599999999999999999 9999999997631      222  556777


Q ss_pred             HHhhccCCceEEEE
Q 022783          152 YTIRQRVGPLLMKM  165 (292)
Q Consensus       152 ~ai~~r~g~v~l~l  165 (292)
                      ..|+...++|.|++
T Consensus        90 ~~l~~~~~~v~l~v  103 (104)
T 2z17_A           90 DLIRSSGNLLTIET  103 (104)
T ss_dssp             HHHHHTTTEEEEEC
T ss_pred             HHHHhCCCcEEEEE
Confidence            88887766666653

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.76  E-value=4.2e-05  Score=58.87  Aligned_cols=77  Identities=19%  Similarity=0.409  Sum_probs=54.1

Q ss_pred             eEEEEecC-----CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           86 EYEVEIEQ-----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        86 ~~~v~l~K-----PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      ..+|+|.|     ++|+.+....  +.+++|..|.+++.|+++| |++||+|+++...   .+-.... -.++..++. .
T Consensus         9 ~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~~~-~~~~~~~~~-~   82 (101)
T 1uez_A            9 VRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDK---SLARVTH-AEAVKALKG-S   82 (101)
T ss_dssp             CEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTE---ECSSCCH-HHHHHHSSS-S
T ss_pred             cEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCcCH-HHHHHhhcC-C
Confidence            34566655     7999998764  3489999999999999999 9999999998632   2211122 234444443 4


Q ss_pred             CceEEEEeec
Q 022783          159 GPLLMKMQKR  168 (292)
Q Consensus       159 g~v~l~l~r~  168 (292)
                      .++.|++.|.
T Consensus        83 ~~v~l~v~R~   92 (101)
T 1uez_A           83 KKLVLSVYSA   92 (101)
T ss_dssp             SSCCEEECCC
T ss_pred             CeEEEEEEEC
Confidence            5788999875

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.76  E-value=2.2e-05  Score=60.86  Aligned_cols=76  Identities=21%  Similarity=0.293  Sum_probs=58.8

Q ss_pred             EEEecCCceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhccCCceEE
Q 022783           88 EVEIEQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGPLLM  163 (292)
Q Consensus        88 ~v~l~KPlGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r~g~v~l  163 (292)
                      .+.=..++|+.+..+.|.  +++|..|.+++.|+++| |++||+|+.+...      +...  +.++..+|+....++.|
T Consensus        10 ~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~~~~~l~~~g~~v~l   82 (103)
T 1v5l_A           10 VLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGF------GTESMTHADAQDRIKAASYQLCL   82 (103)
T ss_dssp             EEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTE------ECSSCCHHHHHHHHTTCCSEEEC
T ss_pred             EEcCCCCcCEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCeEEE
Confidence            334456899999877643  79999999999999999 9999999997631      2333  66777888876778899


Q ss_pred             EEeeccC
Q 022783          164 KMQKRYG  170 (292)
Q Consensus       164 ~l~r~~~  170 (292)
                      .+.|.--
T Consensus        83 ~v~R~g~   89 (103)
T 1v5l_A           83 KIDRAET   89 (103)
T ss_dssp             EECCCTT
T ss_pred             EEEECCe
Confidence            9988543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.76  E-value=1.4e-05  Score=68.56  Aligned_cols=58  Identities=21%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             HHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCccCh
Q 022783          226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV----------KAGLSALEDALLAGYEDF  286 (292)
Q Consensus       226 ~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~----------eeALe~LekAIelG~~Df  286 (292)
                      -+.++|++|++.|+++++++|++   ..+|+|++.|+..++++          ++|+..|++||++.+++.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~---aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~   80 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence            46788999999999999999974   56799999999999875          599999999999987754

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=97.76  E-value=0.00011  Score=57.74  Aligned_cols=71  Identities=15%  Similarity=0.405  Sum_probs=52.2

Q ss_pred             cCCceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783           92 EQPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus        92 ~KPlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      ..+||+.+....  +.+++|..|.+++.|+++| |++||+|+.+...   .+-... .-++...++.. +++.|++.|.
T Consensus        26 ~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~---~v~~~~-~~~~~~~~~~~-~~v~l~v~r~   98 (114)
T 1x5n_A           26 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGV---DFSNLD-HKEAVNVLKSS-RSLTISIVAA   98 (114)
T ss_dssp             SCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTE---ETTSCC-TTHHHHHHHHC-SSEEEEECSS
T ss_pred             CCceeEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHHHhcC-CeEEEEEEcC
Confidence            457899998653  3589999999999999999 9999999998632   221111 23455566644 6899999885

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=8.1e-05  Score=59.85  Aligned_cols=85  Identities=18%  Similarity=0.237  Sum_probs=61.1

Q ss_pred             cccccceEEEEecC------CceeEEeee-CC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhH
Q 022783           80 QEEKYEEYEVEIEQ------PYGLKFAKG-RD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (292)
Q Consensus        80 ~~~~~~~~~v~l~K------PlGl~~~~~-~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~  150 (292)
                      +-.+.+.++|+|.|      ++|+.+... .+  .+++|..|.+++.|+++| |++||+|+.+-.   ..+-.. .+.++
T Consensus        10 e~~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing---~~v~~~-~~~~~   84 (114)
T 2d8i_A           10 EICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINN---RAADAL-NSSML   84 (114)
T ss_dssp             CSSCCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEESS---CBGGGC-CHHHH
T ss_pred             EeccCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECC---EECCCc-CHHHH
Confidence            33455678888875      589888753 23  389999999999999999 999999999863   222111 23455


Q ss_pred             HHHhhccCCceEEEEeeccCC
Q 022783          151 MYTIRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       151 ~~ai~~r~g~v~l~l~r~~~~  171 (292)
                      ..+|+..  ++.|++.|....
T Consensus        85 ~~~l~~~--~v~l~v~R~p~~  103 (114)
T 2d8i_A           85 KDFLSQP--SLGLLVRTYPEL  103 (114)
T ss_dssp             HHHHTSS--EEEEEEEECCCS
T ss_pred             HHHHhCC--cEEEEEEECCCC
Confidence            6667653  899999997654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.72  E-value=0.00023  Score=62.93  Aligned_cols=82  Identities=11%  Similarity=-0.042  Sum_probs=65.5

Q ss_pred             HhhHHHHHhhHhHHH-HHHHHHHHH-------HcCCH-------HHHHHHHHHHHc-CCCCccchhHHHHHHHHHHHhcC
Q 022783          203 QNYMKKKEQKERREQ-DLREGLQLY-------RTGKY-------EVAREKFESVLG-SKPTPEESSVASYNVACCYSKLN  266 (292)
Q Consensus       203 a~Y~kkk~lk~~~~~-~~n~G~~L~-------k~gdY-------eeAIe~fekALe-ldP~~~d~a~a~YN~AccyakLg  266 (292)
                      ..|.+.-...+...+ +++.|..+.       +.|++       ++|+..|++||+ ++|++   ..+|++.|.++..+|
T Consensus        37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---~~~~~~~~~~~~~~~  113 (308)
T 2ond_A           37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEESRM  113 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcC
Confidence            366666555544433 457787775       46886       999999999999 79973   568999999999999


Q ss_pred             CHHHHHHHHHHHHHhCccChh
Q 022783          267 QVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       267 q~eeALe~LekAIelG~~Df~  287 (292)
                      ++++|+..+++||++...+..
T Consensus       114 ~~~~A~~~~~~al~~~p~~~~  134 (308)
T 2ond_A          114 KYEKVHSIYNRLLAIEDIDPT  134 (308)
T ss_dssp             CHHHHHHHHHHHHTSSSSCTH
T ss_pred             CHHHHHHHHHHHHhccccCcc
Confidence            999999999999999876653

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=97.71  E-value=7.9e-05  Score=68.50  Aligned_cols=85  Identities=18%  Similarity=0.298  Sum_probs=64.6

Q ss_pred             cccceEEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh
Q 022783           82 EKYEEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (292)
Q Consensus        82 ~~~~~~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~  155 (292)
                      ...+...|+|.|    +||+.+..+.+  .+++|..|.+||.|++++.|++||+|+.|-.   ..| ......++...|+
T Consensus        74 ~~~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG---~~v-~~~t~~e~v~~l~  149 (263)
T 1z87_A           74 LLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG---EDL-SSATHDEAVQALK  149 (263)
T ss_dssp             TSCSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESS---CBC-TTSCHHHHHHHHH
T ss_pred             CCCccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECC---EEC-CCcCHHHHHHHHh
Confidence            444678899877    58999987754  4899999999999999544999999999763   222 1223456778888


Q ss_pred             ccCCceEEEEeeccC
Q 022783          156 QRVGPLLMKMQKRYG  170 (292)
Q Consensus       156 ~r~g~v~l~l~r~~~  170 (292)
                      ...+.|.|++.|...
T Consensus       150 ~~g~~V~L~V~R~~~  164 (263)
T 1z87_A          150 KTGKEVVLEVKYMKE  164 (263)
T ss_dssp             HCCSCCCEEEECCSS
T ss_pred             cCCCeEEEEEEeCcc
Confidence            777889999999543

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.71  E-value=7.8e-05  Score=58.44  Aligned_cols=58  Identities=19%  Similarity=0.330  Sum_probs=46.1

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      .+|++|..|.+++.|+++| |++||+|+++..      .+...+.....+|+. ..++.|++.|.-
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing------~~v~~~~~~~~~l~~-~~~v~l~v~R~g   91 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGE------QMVQNAEDVYEAVRT-QSQLAVQIRRGR   91 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETT------EECCSHHHHHHHHHH-CSSEEEEEEETT
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHhC-CCeEEEEEEECC
Confidence            5699999999999999999 999999999863      233455566666765 578999998853

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.70  E-value=6.2e-05  Score=58.94  Aligned_cols=79  Identities=19%  Similarity=0.255  Sum_probs=57.2

Q ss_pred             eEEEEecC---CceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc---
Q 022783           86 EYEVEIEQ---PYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ---  156 (292)
Q Consensus        86 ~~~v~l~K---PlGl~~~~~~~G---~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~---  156 (292)
                      +..|+|.|   +||+.+.-+.+.   .++|..|.+++.|+++|.|++||+|+.+-.   ..+ ....+.++...|+.   
T Consensus         7 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng---~~v-~~~~~~~~~~~l~~~~~   82 (103)
T 1ufx_A            7 GTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG---LTL-RGKEHREAARIIAEAFK   82 (103)
T ss_dssp             SEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETT---EEC-TTCBHHHHHHHHHHHHH
T ss_pred             eEEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHHhcc
Confidence            35667766   789999876553   469999999999999999999999999863   212 11234456666664   


Q ss_pred             --cCCceEEEEeec
Q 022783          157 --RVGPLLMKMQKR  168 (292)
Q Consensus       157 --r~g~v~l~l~r~  168 (292)
                        ...++.|.+.|.
T Consensus        83 ~~~~~~i~l~v~r~   96 (103)
T 1ufx_A           83 TKDRDYIDFLVTEF   96 (103)
T ss_dssp             CSSCSEEEEEECCC
T ss_pred             cCCCCeEEEEEEEc
Confidence              356778888774

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=97.69  E-value=0.00011  Score=57.79  Aligned_cols=79  Identities=22%  Similarity=0.330  Sum_probs=54.1

Q ss_pred             cccceEEEEecCC------ceeEEeee-CCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHH
Q 022783           82 EKYEEYEVEIEQP------YGLKFAKG-RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (292)
Q Consensus        82 ~~~~~~~v~l~KP------lGl~~~~~-~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~  152 (292)
                      |.++.-.|.|.|+      +|+.+... .+|  +++|.+|.|++.|+++| +++||+|+.+...    -...-.+..+..
T Consensus         3 ~~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~----~v~~~~~~~l~~   77 (94)
T 3kzd_A            3 MGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNR----AADALNSSMLKD   77 (94)
T ss_dssp             -CCEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTE----EGGGCCHHHHHH
T ss_pred             cccceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE----ECCCCCHHHHHH
Confidence            4556666677665      88988774 343  89999999999999999 9999999997632    111123455666


Q ss_pred             HhhccCCceEEEEee
Q 022783          153 TIRQRVGPLLMKMQK  167 (292)
Q Consensus       153 ai~~r~g~v~l~l~r  167 (292)
                      +|+++  ++.|++..
T Consensus        78 ~l~~~--~l~ltV~~   90 (94)
T 3kzd_A           78 FLSQP--SLGLLVRT   90 (94)
T ss_dssp             HHHSS--EEEEEEEE
T ss_pred             HHhCC--eEEEEEEe
Confidence            77654  46665543

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=97.67  E-value=0.00014  Score=62.15  Aligned_cols=81  Identities=17%  Similarity=0.359  Sum_probs=59.4

Q ss_pred             ceEEEEecC----CceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      +.++|+|.|    .+|+.+..+.      +.+++|..|.|++-|+++|.|++||+|+++..   ..+ ....+..+...|
T Consensus         6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng---~~v-~~~~~~~~~~~l   81 (196)
T 1p1d_A            6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING---IPT-EDSTFEEANQLL   81 (196)
T ss_dssp             EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETT---BCS-TTSCHHHHHHHH
T ss_pred             EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHH
Confidence            567788766    4899998863      34799999999999999999999999999763   212 111334566777


Q ss_pred             hcc--CCceEEEEeecc
Q 022783          155 RQR--VGPLLMKMQKRY  169 (292)
Q Consensus       155 ~~r--~g~v~l~l~r~~  169 (292)
                      +..  ...+.|++.|.-
T Consensus        82 ~~~~~g~~v~l~v~R~~   98 (196)
T 1p1d_A           82 RDSSITSKVTLEIEFDV   98 (196)
T ss_dssp             HTCCSSSEEEEEEEECS
T ss_pred             HhCCCCCeEEEEEEecC
Confidence            755  346788888754

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.66  E-value=0.00018  Score=58.01  Aligned_cols=70  Identities=13%  Similarity=0.206  Sum_probs=52.3

Q ss_pred             CceeEEeeeC-----CCCeEEEEeCC--CCCcccccCcccCCEEEEeccccCcccccccch--hhHHHHhhccCCceEEE
Q 022783           94 PYGLKFAKGR-----DGGTYIDAIAP--GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRVGPLLMK  164 (292)
Q Consensus        94 PlGl~~~~~~-----~G~v~V~~v~~--ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~--g~~~~ai~~r~g~v~l~  164 (292)
                      ++|+.|.-..     ..+++|..|.+  ++.|+++| |++||+|+++..   .   +...+  .++..+|+....++.|+
T Consensus        28 ~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng---~---~v~~~~~~dl~~~l~~~g~~v~l~  100 (118)
T 2yub_A           28 RRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEING---T---PVRTLRVEEVEDAIKQTSQTLQLL  100 (118)
T ss_dssp             SCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESS---S---BTTTSCHHHHHHHHHCCSSCEEEE
T ss_pred             CceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECC---E---ECCCcCHHHHHHHHHhCCCEEEEE
Confidence            4677766432     35899999999  99999999 999999999863   2   23333  56677777665578999


Q ss_pred             EeeccC
Q 022783          165 MQKRYG  170 (292)
Q Consensus       165 l~r~~~  170 (292)
                      +.|.-.
T Consensus       101 v~R~g~  106 (118)
T 2yub_A          101 IEHDPV  106 (118)
T ss_dssp             EEECSS
T ss_pred             EEECCE
Confidence            988544

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.65  E-value=0.0001  Score=70.89  Aligned_cols=75  Identities=21%  Similarity=0.392  Sum_probs=57.7

Q ss_pred             EEecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCC-ceEEEEe
Q 022783           89 VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVG-PLLMKMQ  166 (292)
Q Consensus        89 v~l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g-~v~l~l~  166 (292)
                      +.-..+||+.+..++++|++|..|.+||.|+++| |++||+|+.+...   .+ ......++...|+. .+| +|.|++.
T Consensus        15 ~~k~~~lG~~i~gg~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~---~v-~~~~~~e~~~~l~~~~~g~~v~l~v~   89 (391)
T 3tsz_A           15 FRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV---DF-TNIIREEAVLFLLDLPKGEEVTILAQ   89 (391)
T ss_dssp             EECCSSCCEEEEEETTTEEEEEEECTTCHHHHTT-CCTTEEEEEETTE---EC-TTCCHHHHHHHHHHSCTTSEEEEEEE
T ss_pred             eecCCceeEEEEecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHhhcCCCeEEEEEe
Confidence            3334489999988888999999999999999999 9999999998741   11 11235667778875 455 6888888


Q ss_pred             ec
Q 022783          167 KR  168 (292)
Q Consensus       167 r~  168 (292)
                      |.
T Consensus        90 r~   91 (391)
T 3tsz_A           90 KK   91 (391)
T ss_dssp             EC
T ss_pred             eC
Confidence            75

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=97.64  E-value=0.00014  Score=60.93  Aligned_cols=81  Identities=26%  Similarity=0.461  Sum_probs=59.8

Q ss_pred             eEEEEec---CCceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh
Q 022783           86 EYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (292)
Q Consensus        86 ~~~v~l~---KPlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~  155 (292)
                      .++|++.   .++|+.+....       +.+++|..|.|+|.|+++|.+++||+|+++-..   .+ ....+.++...|+
T Consensus       101 ~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~---~v-~~~~~~~~~~~l~  176 (196)
T 3gsl_A          101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV---GL-EDVMHEDAVAALK  176 (196)
T ss_dssp             EEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-SSCBHHHHHHHHH
T ss_pred             cEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCC---cC-CCCCHHHHHHHHH
Confidence            3455543   46888886542       348999999999999999999999999998742   11 1122556778888


Q ss_pred             ccCCceEEEEeeccC
Q 022783          156 QRVGPLLMKMQKRYG  170 (292)
Q Consensus       156 ~r~g~v~l~l~r~~~  170 (292)
                      ....++.|.+.|+-.
T Consensus       177 ~~~~~v~l~v~R~~~  191 (196)
T 3gsl_A          177 NTYDVVYLKVAKPSN  191 (196)
T ss_dssp             SCCEEEEEEEEEESC
T ss_pred             cCCCeEEEEEeCCCC
Confidence            777889999998644

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.64  E-value=0.00024  Score=63.29  Aligned_cols=64  Identities=9%  Similarity=-0.032  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc--chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~--d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..++|..++..|+|++|+..|++++++.|...  ....+|+++|.++..+|++++|+..+++|+++
T Consensus       138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998877532  23467999999999999999999999999877

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.63  E-value=0.00011  Score=72.77  Aligned_cols=76  Identities=21%  Similarity=0.388  Sum_probs=58.1

Q ss_pred             EEEec--CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc--cCCceEE
Q 022783           88 EVEIE--QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLM  163 (292)
Q Consensus        88 ~v~l~--KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~--r~g~v~l  163 (292)
                      .|++.  ++||+.+.-++++|+||..|.+||.|+++| |++||+|+.+...   .| ......+++..|+.  -.++|.|
T Consensus         4 ~V~l~k~~~lG~~i~gg~~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~---~v-~~~t~~e~~~~L~~~~~g~~v~L   78 (468)
T 3shw_A            4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV---DF-TNIIREEAVLFLLDLPKGEEVTI   78 (468)
T ss_dssp             EEEEECCSSCCEEEEEETTTEEEEEEECSSSHHHHTT-CCTTEEEEEETTE---EC-TTCCHHHHHHHHHHSCTTSEEEE
T ss_pred             EEEEecCCccceEEEccCcCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHhcCCCCEEEE
Confidence            34554  589999988888999999999999999999 9999999998642   11 11235566778876  3467888


Q ss_pred             EEeec
Q 022783          164 KMQKR  168 (292)
Q Consensus       164 ~l~r~  168 (292)
                      ++.|.
T Consensus        79 ~V~r~   83 (468)
T 3shw_A           79 LAQKK   83 (468)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88883

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=97.62  E-value=0.00016  Score=57.66  Aligned_cols=76  Identities=14%  Similarity=0.193  Sum_probs=53.1

Q ss_pred             EEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc-eEE
Q 022783           88 EVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP-LLM  163 (292)
Q Consensus        88 ~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~-v~l  163 (292)
                      .|+|.|   ++|+.+.  .+.+++|..|.|++.|+++| |++||+|+++-..   .+ ......++...|+...+. |.|
T Consensus        26 ~v~l~k~~~~~G~~l~--~~~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~---~v-~~~~~~dv~~~i~~~~~~~v~l   98 (109)
T 2vsv_A           26 SIRFTAEEGDLGFTLR--GNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLV---DC-KWLTLSEVMKLLKSFGEDEIEM   98 (109)
T ss_dssp             EEEECCGGGCCCEEEE--SSSSCEEEEECTTSHHHHTT-CCTTCEEEEETTE---EC-TTCCHHHHHHHHHTTTTSCEEE
T ss_pred             EEEEEeCCCceeEEEe--CCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCCCeEEE
Confidence            455554   4666553  34579999999999999999 9999999998632   11 111345566777766554 999


Q ss_pred             EEeeccC
Q 022783          164 KMQKRYG  170 (292)
Q Consensus       164 ~l~r~~~  170 (292)
                      ++.|+..
T Consensus        99 ~V~~~~~  105 (109)
T 2vsv_A           99 KVVSLLD  105 (109)
T ss_dssp             EEESCC-
T ss_pred             EEEECCC
Confidence            9988653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.60  E-value=0.00022  Score=54.65  Aligned_cols=66  Identities=15%  Similarity=-0.017  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          216 EQDLREGLQLYRTGK---YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       216 ~~~~n~G~~L~k~gd---YeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .-.+..|..++..++   .++|...+++||+++|++   ..+++.+|..+...|+|++|+..++++++...+
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            345688999976655   799999999999999984   457999999999999999999999999998776

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.60  E-value=0.00019  Score=67.47  Aligned_cols=59  Identities=15%  Similarity=0.172  Sum_probs=27.9

Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 022783          219 LREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAG  282 (292)
Q Consensus       219 ~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq~eeALe~LekAIelG  282 (292)
                      +++|..+..    .+++++|+++|+++++...     ..++++++.+|..    .+++++|+..+++|++.|
T Consensus       151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~-----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  217 (490)
T 2xm6_A          151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN-----VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG  217 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence            344444444    4444445555544444321     2345555555554    455555555555555544

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=97.60  E-value=0.00021  Score=60.57  Aligned_cols=71  Identities=20%  Similarity=0.395  Sum_probs=53.4

Q ss_pred             CCceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           93 QPYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        93 KPlGl~~~~~~----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      +.||+.+.-+.          +.+++|..|.|++.|++ | |++||+|+.+..   ..+-. ...-+++.+++...+.|.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng---~~v~~-~~~~~~~~~~~~~~~~v~   75 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANG---YSFIN-IEHGQAVSLLKTFQNTVE   75 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETT---EECTT-CCHHHHHHHHHHCCSEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECC---EECCC-CCHHHHHHHHHcCCCeEE
Confidence            45788887653          35999999999999999 7 999999999752   22222 224466777877777899


Q ss_pred             EEEeecc
Q 022783          163 MKMQKRY  169 (292)
Q Consensus       163 l~l~r~~  169 (292)
                      |.+.|..
T Consensus        76 l~v~r~~   82 (195)
T 2qbw_A           76 LIIVREV   82 (195)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999953

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=97.57  E-value=9.4e-05  Score=56.54  Aligned_cols=72  Identities=14%  Similarity=0.199  Sum_probs=51.8

Q ss_pred             cCCceeEEeeeC----CC-----CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           92 EQPYGLKFAKGR----DG-----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        92 ~KPlGl~~~~~~----~G-----~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      ..++|+.+....    ++     +++|..|.+++.|+++| |++||+|+++..    .-.......++...|+.....+.
T Consensus        12 ~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing----~~v~~~~~~~~~~~l~~~g~~v~   86 (99)
T 3khf_A           12 GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHING----ESVLGLVHMDVVELLLKSGNKIS   86 (99)
T ss_dssp             CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETT----EECTTCCHHHHHHHHHHSCSEEE
T ss_pred             CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECC----EECCCCCHHHHHHHHhcCCCEEE
Confidence            346788776542    11     56899999999999999 999999999763    22222245567777875567788


Q ss_pred             EEEeec
Q 022783          163 MKMQKR  168 (292)
Q Consensus       163 l~l~r~  168 (292)
                      |++.|.
T Consensus        87 l~v~r~   92 (99)
T 3khf_A           87 LRTTAL   92 (99)
T ss_dssp             EEEECS
T ss_pred             EEEEEC
Confidence            888873

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.57  E-value=0.00012  Score=67.88  Aligned_cols=98  Identities=10%  Similarity=-0.044  Sum_probs=74.1

Q ss_pred             hccccchhhHH--HHHH--HhhHHHHHhhHhHHHHH-HHHHHH----HHc---CCHHHHHHHHHHHHcCCCCccchhHHH
Q 022783          188 RNSGVISNRVR--EIQM--QNYMKKKEQKERREQDL-REGLQL----YRT---GKYEVAREKFESVLGSKPTPEESSVAS  255 (292)
Q Consensus       188 rN~GvI~~~l~--eiqe--a~Y~kkk~lk~~~~~~~-n~G~~L----~k~---gdYeeAIe~fekALeldP~~~d~a~a~  255 (292)
                      ...|.+...+.  .+++  ..+.+.....++.+..+ .++.++    ...   ++++++++.++++|+.+|++   ..+|
T Consensus        71 n~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn---y~aW  147 (306)
T 3dra_A           71 IYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN---HHVW  147 (306)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---HHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---HHHH
Confidence            33444444433  3333  35555555555555554 777777    666   89999999999999999984   4689


Q ss_pred             HHHHHHHHhcCCHH--HHHHHHHHHHHhCccChhh
Q 022783          256 YNVACCYSKLNQVK--AGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       256 YN~AccyakLgq~e--eALe~LekAIelG~~Df~~  288 (292)
                      +++.-++.+++.++  ++++.++++|+..+.+|..
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA  182 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA  182 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999  9999999999999988753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.56  E-value=0.00016  Score=66.99  Aligned_cols=131  Identities=10%  Similarity=0.080  Sum_probs=89.5

Q ss_pred             ccchhhHHHHhhccCCceEEEEe-ec-cCCccccccccHHHH---H-HHhhccccchhhHHHHHHHhhHHHHHhhHhHHH
Q 022783          144 AAEYGRTMYTIRQRVGPLLMKMQ-KR-YGKMEQTGELSEKEI---I-RAERNSGVISNRVREIQMQNYMKKKEQKERREQ  217 (292)
Q Consensus       144 a~~~g~~~~ai~~r~g~v~l~l~-r~-~~~~~~~~~~~e~~~---~-~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~  217 (292)
                      .+.+|.-..+++-.++.+.-.+. -+ ||++++ .--+-.+.   | ..+...|.+..+...++....     ..+....
T Consensus        64 ~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~-~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~~  137 (282)
T 4f3v_A           64 RRNFGQLSGSVQISMSTLNARIAIGGLYGDITY-PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHLV  137 (282)
T ss_dssp             GGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE-ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHHH
T ss_pred             HHHHHHHHHHhcCChhhhhhhhccCCccccccc-ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchHH
Confidence            34566666777777788877776 44 566554 11121221   2 455666776666555554322     1111125


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .+..|+.+++.++|++|+..|++++...++ .....++||+++++..+|++++|+.+|++|+..
T Consensus       138 ~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g  200 (282)
T 4f3v_A          138 AWMKAVVYGAAERWTDVIDQVKSAGKWPDK-FLAGAAGVAHGVAAANLALFTEAERRLTEANDS  200 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhccCCc-ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence            579999999999999999999999876422 112457999999999999999999999999853

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.54  E-value=0.00033  Score=62.39  Aligned_cols=66  Identities=9%  Similarity=-0.044  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-----ccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPT-----PEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~-----~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ..++|..+...|+|++|+..|++++++.+.     ......+++|+|.+|..+|++++|+..+++|+++..
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            358999999999999999999999975431     123456799999999999999999999999998754

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=97.54  E-value=0.00023  Score=60.76  Aligned_cols=79  Identities=20%  Similarity=0.367  Sum_probs=61.0

Q ss_pred             ceEEEEec---CCceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCccccccc--chhhHHHH
Q 022783           85 EEYEVEIE---QPYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYT  153 (292)
Q Consensus        85 ~~~~v~l~---KPlGl~~~~~~------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~--~~g~~~~a  153 (292)
                      ..+.|++.   .++|+.+..+.      ..+++|..|.+++.|+++|.+++||+|+.+-.      .+..  .+.++..+
T Consensus       106 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing------~~v~~~~~~~~~~~  179 (200)
T 2qt5_A          106 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDG------IRLLGTTHAEAMSI  179 (200)
T ss_dssp             EEEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETT------EECTTCCHHHHHHH
T ss_pred             eEEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC------EECCCCCHHHHHHH
Confidence            44666654   45899987653      34899999999999999999999999999763      2333  56677788


Q ss_pred             hhccCCceEEEEeecc
Q 022783          154 IRQRVGPLLMKMQKRY  169 (292)
Q Consensus       154 i~~r~g~v~l~l~r~~  169 (292)
                      |+....++.|.++|.-
T Consensus       180 l~~~~~~v~l~v~R~~  195 (200)
T 2qt5_A          180 LKQCGQEATLLIEYDV  195 (200)
T ss_dssp             HHTTCSEEEEEEEEEE
T ss_pred             HHcCCCeEEEEEEECC
Confidence            8875668899999853

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=97.52  E-value=0.00017  Score=57.56  Aligned_cols=75  Identities=17%  Similarity=0.403  Sum_probs=55.9

Q ss_pred             EEEEec---CCceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhccCCc
Q 022783           87 YEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGP  160 (292)
Q Consensus        87 ~~v~l~---KPlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r~g~  160 (292)
                      ..|+|.   ..+|+.+..+. .++++|..|.+++.|+++| |++||+|+++...      +...  +.++..+|+...+.
T Consensus        11 r~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~   83 (128)
T 2kjd_A           11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV------CMEGKQHGDVVSAIRAGGDE   83 (128)
T ss_dssp             EEEEEECCSSSCCEEEEECSSSCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHTTCSE
T ss_pred             EEEEEecCCCcccEEEEecCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCC
Confidence            344444   45888887764 3599999999999999999 9999999998642      2333  66777888876554


Q ss_pred             -eEEEEeec
Q 022783          161 -LLMKMQKR  168 (292)
Q Consensus       161 -v~l~l~r~  168 (292)
                       +.|.+.|.
T Consensus        84 ~~~l~v~R~   92 (128)
T 2kjd_A           84 TKLLVVDRE   92 (128)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEEEEeC
Confidence             45888774

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.51  E-value=0.00012  Score=60.13  Aligned_cols=83  Identities=13%  Similarity=0.231  Sum_probs=59.4

Q ss_pred             ceEEEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cC-C
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-G  159 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~-g  159 (292)
                      ..++++|.|   -||+.+.. .+++++|..|.++|.|+++|.|++||+|+++-.   ..| ....+.++..+|+. .+ .
T Consensus        27 ~~~~~~l~k~~~glG~~i~~-~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG---~~v-~~~s~~d~~~~l~~~~~G~  101 (126)
T 1wif_A           27 KVIQTKLTVGNLGLGLVVIQ-NGPYLQISHLINKGAAASDGILQPGDVLISVGH---ANV-LGYTLREFLKLLQNITIGT  101 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEE-ETTEEEECCCCTTSSGGGCSSSCTTCBEEEESS---SCC-TTCCHHHHHHHHTSCCSSC
T ss_pred             ceEEEEEecCCceEeEEEEc-CCCcEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEc-CCCCHHHHHHHHhcCCCCC
Confidence            345666554   35555554 456899999999999999999999999999862   222 11245677788886 33 4


Q ss_pred             ceEEEEeeccCCc
Q 022783          160 PLLMKMQKRYGKM  172 (292)
Q Consensus       160 ~v~l~l~r~~~~~  172 (292)
                      +|.|++.|.|-.+
T Consensus       102 ~v~l~V~R~~~~i  114 (126)
T 1wif_A          102 VLQIKAYRGFLEI  114 (126)
T ss_dssp             EEEEEEESSSSCC
T ss_pred             EEEEEEEECCCcc
Confidence            6899999985443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.50  E-value=0.00041  Score=55.40  Aligned_cols=59  Identities=5%  Similarity=-0.097  Sum_probs=53.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCcc
Q 022783          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       221 ~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq~eeALe~LekAIelG~~  284 (292)
                      +|..+...+.+++|+++|++|.+...     ..++||++.+|..    .+++++|+..+++|.+.|..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~-----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~   93 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNS-----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQ   93 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCH
Confidence            99999999999999999999998743     4689999999999    89999999999999999854

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=0.00014  Score=55.79  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=56.3

Q ss_pred             ceEEEEecC-----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC
Q 022783           85 EEYEVEIEQ-----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (292)
Q Consensus        85 ~~~~v~l~K-----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g  159 (292)
                      ..++|+|.|     ++|+.+..  +.+++|..|.+++.|+ +| |++||+|+++..   ..+ ....+-+++..++....
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~--~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing---~~v-~~~~~~~~~~~~~~~g~   79 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISE--SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNN---EPA-EDLSWERAVDILREAED   79 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCS--SSSCBCCCBCSSSSST-TT-SCTTCBEEEESS---CBS-TTCCHHHHHHHHHHCSS
T ss_pred             ccEEEEEEECCCCCcccEEEec--CCCeEEEEECCCCchh-hC-CCCCCEEEEECC---EEC-CCCCHHHHHHHHHcCCC
Confidence            447788875     45666643  5689999999999996 66 999999999763   222 11234466677776677


Q ss_pred             ceEEEEeecc
Q 022783          160 PLLMKMQKRY  169 (292)
Q Consensus       160 ~v~l~l~r~~  169 (292)
                      +|.|.+.|..
T Consensus        80 ~v~l~v~R~~   89 (96)
T 2edv_A           80 SLSITVVRCT   89 (96)
T ss_dssp             CEEEEEEECC
T ss_pred             eEEEEEEECC
Confidence            8999999976

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.48  E-value=0.0004  Score=68.30  Aligned_cols=65  Identities=11%  Similarity=-0.091  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHc-----CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLG-----SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALe-----ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +.++++..+..+|+|++|+..|+++|+     +.|+..+....++|+|.+|..+|+|++|+..+++||++
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i  380 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG  380 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            445777788899999999999999995     44666677888999999999999999999999999876

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=97.47  E-value=0.00036  Score=59.49  Aligned_cols=78  Identities=19%  Similarity=0.362  Sum_probs=56.8

Q ss_pred             ceEEEEecC----CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccch--hhHHHHhhc
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQ  156 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~--g~~~~ai~~  156 (292)
                      ..+.|+|.|    +||+.+..+.  +++++|..|.+++.|+++|.|++||+|+++..   .   +...+  .+++.+++.
T Consensus         7 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng---~---~v~~~~~~~~~~~~~~   80 (200)
T 2qt5_A            7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNG---I---NLAKFRHDEIISLLKN   80 (200)
T ss_dssp             EEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETT---E---ECTTSCHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECC---E---ECCCCCHHHHHHHHHh
Confidence            446777754    7999998763  45899999999999999944999999999763   2   22222  445566665


Q ss_pred             cCCceEEEEeec
Q 022783          157 RVGPLLMKMQKR  168 (292)
Q Consensus       157 r~g~v~l~l~r~  168 (292)
                      -..+|.|++.|.
T Consensus        81 ~g~~v~l~v~R~   92 (200)
T 2qt5_A           81 VGERVVLEVEYE   92 (200)
T ss_dssp             CCSEEEEEEEEE
T ss_pred             CCCeEEEEEecc
Confidence            556788888875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.47  E-value=0.00054  Score=65.14  Aligned_cols=114  Identities=7%  Similarity=-0.065  Sum_probs=86.6

Q ss_pred             eccCCccccccccHHH-HHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHc
Q 022783          167 KRYGKMEQTGELSEKE-IIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLG  243 (292)
Q Consensus       167 r~~~~~~~~~~~~e~~-~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~g-dYeeAIe~fekALe  243 (292)
                      -+.-++....++.+.- .++++...+....    -....+.+...+.+..+..+ .++.++...+ +++++++.++++|.
T Consensus        42 ~~~~~i~y~~~y~~~~~~~r~~~~~~e~se----~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~  117 (349)
T 3q7a_A           42 NPVVPIMYSEEYKDAMDYFRAIAAKEEKSE----RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV  117 (349)
T ss_dssp             SCSSCBCCCHHHHHHHHHHHHHHHTTCCSH----HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CCeeeeeeCHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3444555656666665 4677777666543    12335555555555556654 8899999999 59999999999999


Q ss_pred             CCCCccchhHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHhCccChh
Q 022783          244 SKPTPEESSVASYNVACCYSKL-N-QVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       244 ldP~~~d~a~a~YN~AccyakL-g-q~eeALe~LekAIelG~~Df~  287 (292)
                      .+|++   ..+|+++..|+..+ + +++++|+.|+++|+....+|.
T Consensus       118 ~nPKn---y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~  160 (349)
T 3q7a_A          118 QNLKS---YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH  160 (349)
T ss_dssp             TTCCC---HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH
T ss_pred             hCCCc---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH
Confidence            99984   56899999999998 8 999999999999999887764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.45  E-value=0.00072  Score=63.69  Aligned_cols=82  Identities=6%  Similarity=-0.045  Sum_probs=68.6

Q ss_pred             hhHHHHHhhHhHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 022783          204 NYMKKKEQKERREQDL-REGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-VKAGLSALEDAL  279 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~~-n~G~~L~k~g--dYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq-~eeALe~LekAI  279 (292)
                      .+.......++.++.+ .++..+...+  +|++++++++++|+.+|.+   ..+|+++..+...+|. ++++++.++++|
T Consensus        96 ~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN---y~AW~~R~~vl~~l~~~~~eel~~~~~~I  172 (331)
T 3dss_A           96 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLI  172 (331)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            5555555555556665 8899999988  4999999999999999984   4589999999999999 699999999999


Q ss_pred             HhCccChhh
Q 022783          280 LAGYEDFKV  288 (292)
Q Consensus       280 elG~~Df~~  288 (292)
                      +..+.|+..
T Consensus       173 ~~~p~N~SA  181 (331)
T 3dss_A          173 TRNFSNYSS  181 (331)
T ss_dssp             HHCSCCHHH
T ss_pred             HHCCCCHHH
Confidence            999998764

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=97.41  E-value=0.0004  Score=53.12  Aligned_cols=73  Identities=11%  Similarity=0.157  Sum_probs=54.0

Q ss_pred             eEEEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           86 EYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        86 ~~~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      ...|+|.|    ++|+.+.   +|  +|..|.+++.|+++| +++||+|+.|-..    =.......++...||.-.+.|
T Consensus         5 ~r~v~l~k~~~g~~Gf~i~---~g--~I~~v~~gspA~~aG-l~~GD~Il~VNG~----~v~~~~~~evv~llr~~g~~V   74 (82)
T 1r6j_A            5 PRTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEINGQ----NVIGLKDSQIADILSTSGTVV   74 (82)
T ss_dssp             CEEEEEECCTTSCCCEEEE---TT--EEEEECTTSHHHHHT-CCSSEEEEEETTE----ECTTCCHHHHHHHHHHSCSEE
T ss_pred             eEEEEEEECCCCCeEEEEE---CC--EEEEecCCCHHHHcC-CCCCCEEEEECCE----EcCCCCHHHHHHHHhcCCCEE
Confidence            36788877    5777774   23  489999999999999 8899999998742    122234567888999656678


Q ss_pred             EEEEeec
Q 022783          162 LMKMQKR  168 (292)
Q Consensus       162 ~l~l~r~  168 (292)
                      .|++...
T Consensus        75 ~L~v~p~   81 (82)
T 1r6j_A           75 TITIMPA   81 (82)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            8887654

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=97.41  E-value=0.00034  Score=58.32  Aligned_cols=73  Identities=22%  Similarity=0.426  Sum_probs=53.0

Q ss_pred             EEEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhh--HHHHhhccCC-
Q 022783           87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR--TMYTIRQRVG-  159 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~--~~~ai~~r~g-  159 (292)
                      .+|+|.|    .||+.+... +++++|..|.|++.|+++| |++||+|+++...      +...+..  ....++...| 
T Consensus         6 r~v~l~k~~~~~lG~~~~~~-~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~~~~~~~~   77 (166)
T 1w9e_A            6 REVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVG-LRFGDQVLQINGE------NCAGWSSDKAHKVLKQAFGE   77 (166)
T ss_dssp             EEEEEECCTTSCCSEEEEEE-TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHHCCSS
T ss_pred             EEEEEEeCCCCcEeEEEEeC-CCCEEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhcCCCC
Confidence            5677766    689999874 5789999999999999999 9999999998632      2222222  3345555455 


Q ss_pred             ceEEEEee
Q 022783          160 PLLMKMQK  167 (292)
Q Consensus       160 ~v~l~l~r  167 (292)
                      ++.|++.|
T Consensus        78 ~v~l~vr~   85 (166)
T 1w9e_A           78 KITMTIRD   85 (166)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEc
Confidence            77888843

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=97.38  E-value=0.00046  Score=58.88  Aligned_cols=77  Identities=21%  Similarity=0.358  Sum_probs=59.9

Q ss_pred             eEEEEecC----CceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhh
Q 022783           86 EYEVEIEQ----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIR  155 (292)
Q Consensus        86 ~~~v~l~K----PlGl~~~~~~----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~  155 (292)
                      .+.|++++    .||+.+....    ..+++|..|.+++.|+++|.+++||+|+.+..      .+...  +..+..+|+
T Consensus       108 ~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng------~~v~~~~~~~~~~~l~  181 (196)
T 1p1d_A          108 TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDN------IRLDSCSMEDAVQILQ  181 (196)
T ss_dssp             CEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETT------EEGGGCCHHHHHHHHH
T ss_pred             cEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECC------EECCCCCHHHHHHHHH
Confidence            46777763    5899987642    35899999999999999998999999999763      12333  666777787


Q ss_pred             ccCCceEEEEeec
Q 022783          156 QRVGPLLMKMQKR  168 (292)
Q Consensus       156 ~r~g~v~l~l~r~  168 (292)
                      ....++.|.++|.
T Consensus       182 ~~~~~v~l~v~R~  194 (196)
T 1p1d_A          182 QCEDLVKLKIRKD  194 (196)
T ss_dssp             HCTTCEEEEEECC
T ss_pred             hCCCEEEEEEEeC
Confidence            6678899999885

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=97.38  E-value=0.00024  Score=56.94  Aligned_cols=70  Identities=19%  Similarity=0.350  Sum_probs=51.0

Q ss_pred             ecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc---cCCceEEEEe
Q 022783           91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ---RVGPLLMKMQ  166 (292)
Q Consensus        91 l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~---r~g~v~l~l~  166 (292)
                      -....|+.+.. .++++.|.+|.+|+.|+++| +++||+|+++-.   .. .....+.++...|+.   ..++|.|.+.
T Consensus        26 ~~~g~G~~l~~-~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing---~~-v~~~s~~dv~~~i~~~~~~g~~v~LLV~   98 (101)
T 3qik_A           26 QEEDYGFDIEE-KNKAVVVKSVQRGSLAEVAG-LQVGRKIYSINE---DL-VFLRPFSEVESILNQSFCSRRPLRLLVA   98 (101)
T ss_dssp             CSSSSSEEEEE-ETTEEEEEEECTTSHHHHHT-CCTTCBEEEETT---EE-STTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCcccEEEEc-cCCCeEEEEECCCCHHHHcC-CCCCCEEEEECC---EE-cCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence            34567777776 46689999999999999999 999999999862   22 222345555556654   5788887765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.38  E-value=0.00039  Score=71.32  Aligned_cols=83  Identities=22%  Similarity=0.404  Sum_probs=63.2

Q ss_pred             ceEEEEecC---CceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      +...|+|.|   +||+.+..+.+ .+++|..|.+||.|+++|.|++||+|+.+..   ..+ ......++..+|+...+.
T Consensus       307 ~~~~v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg---~~v-~~~~~~e~~~~l~~~~~~  382 (721)
T 2xkx_A          307 EPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNG---VDL-RNASHEQAAIALKNAGQT  382 (721)
T ss_pred             ceEEEEEEECCCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECC---EEC-CCCCHHHHHHHHHhcCCe
Confidence            455677665   58998876544 5999999999999999999999999999874   212 111355677888877888


Q ss_pred             eEEEEeeccCC
Q 022783          161 LLMKMQKRYGK  171 (292)
Q Consensus       161 v~l~l~r~~~~  171 (292)
                      |.|.+.|....
T Consensus       383 v~L~v~r~~~~  393 (721)
T 2xkx_A          383 VTIIAQYKPEE  393 (721)
T ss_pred             EEEEEEeCchh
Confidence            99999887654

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.35  E-value=0.00027  Score=54.15  Aligned_cols=64  Identities=22%  Similarity=0.449  Sum_probs=46.5

Q ss_pred             CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEee
Q 022783           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK  167 (292)
Q Consensus        94 PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r  167 (292)
                      ++|+.+.   .|  +|..|.++|.|+++| |++||+|+.+..   ..+ ......++...|+.....+.|++.+
T Consensus        25 ~lG~~~~---~G--~V~~V~~~spA~~aG-L~~GD~Il~Ing---~~v-~~~~~~~~~~~l~~~g~~v~l~v~p   88 (90)
T 1y7n_A           25 QLGFSVQ---NG--IICSLMRGGIAERGG-VRVGHRIIEING---QSV-VATPHEKIVHILSNAVGEIHMKTMP   88 (90)
T ss_dssp             CCCEEEE---TT--EEEEECTTSHHHHHT-CCSSCEEEEETT---EEC-TTSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             ccCeEec---CC--EEEEECCCCHHHHcC-CCCCCEEEEECC---EEC-CCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            4777663   23  999999999999999 999999999763   222 1134556777787656677777764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.35  E-value=0.00041  Score=65.75  Aligned_cols=80  Identities=19%  Similarity=0.306  Sum_probs=52.5

Q ss_pred             HHHHHH-hhHHHHHhhHhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCC
Q 022783          198 REIQMQ-NYMKKKEQKERREQDLREGLQLYRTG-----KYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQ  267 (292)
Q Consensus       198 ~eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k~g-----dYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq  267 (292)
                      +..+++ .|+++..........+++|..|. .|     ++++|+.+|++|+   |.   ...++||+|.+|..    ..+
T Consensus       265 ~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g---~~~A~~~Lg~~y~~G~g~~~d  337 (452)
T 3e4b_A          265 GDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR---EVAADYYLGQIYRRGYLGKVY  337 (452)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT---CHHHHHHHHHHHHTTTTSSCC
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC---CHHHHHHHHHHHHCCCCCCcC
Confidence            333443 33333333333455668887777 44     8888888888888   43   24578888888877    348


Q ss_pred             HHHHHHHHHHHHHhCcc
Q 022783          268 VKAGLSALEDALLAGYE  284 (292)
Q Consensus       268 ~eeALe~LekAIelG~~  284 (292)
                      +++|+..+++|.+.|..
T Consensus       338 ~~~A~~~~~~Aa~~g~~  354 (452)
T 3e4b_A          338 PQKALDHLLTAARNGQN  354 (452)
T ss_dssp             HHHHHHHHHHHHTTTCT
T ss_pred             HHHHHHHHHHHHhhChH
Confidence            88888888888887754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.00058  Score=61.57  Aligned_cols=65  Identities=12%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch--------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES--------------SVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~--------------a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..+++|..+.+.|+|++|++.|.++++..|+..+.              ..++++++.+|..+|++++|++.+.+++++
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34688999999999999999999999988874221              246899999999999999999999998775

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=96.36  E-value=4.1e-05  Score=61.01  Aligned_cols=74  Identities=23%  Similarity=0.442  Sum_probs=49.9

Q ss_pred             EEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCccc-ccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC
Q 022783           87 YEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADK-TGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k-~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g  159 (292)
                      .+|+|.|    ++|+.+..+.+  .+++|..|.++|.|++ +| |++||+|+++..   ..+ ....+.++..+|+...+
T Consensus        29 ~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING---~~v-~~~~~~~~~~~l~~~~~  103 (112)
T 2lob_A           29 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNG---VNL-RDTKHKEAVTILSQQRG  103 (112)
Confidence            4555544    57888776533  4799999999999999 66 999999999763   222 11234455666665555


Q ss_pred             ceEEEE
Q 022783          160 PLLMKM  165 (292)
Q Consensus       160 ~v~l~l  165 (292)
                      .+.|++
T Consensus       104 ~v~l~V  109 (112)
T 2lob_A          104 EIEFEV  109 (112)
Confidence            566554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.25  E-value=0.0011  Score=64.28  Aligned_cols=62  Identities=8%  Similarity=-0.135  Sum_probs=52.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHc-----CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          220 REGLQLYRTGKYEVAREKFESVLG-----SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALe-----ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +........|+|++|+..|+++|+     +.|+..+....++|+|.+|..+|+|++|+..+++||++
T Consensus       303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i  369 (433)
T 3qww_A          303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP  369 (433)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            333444567999999999999996     45666677888999999999999999999999999876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.25  E-value=0.00096  Score=64.21  Aligned_cols=65  Identities=11%  Similarity=-0.017  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALel-----dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +.++....++.+|+|++|++.|+++|++     .|+.......+.|+|.+|..+|+|++|+..+++||++
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i  358 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP  358 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            4456666788899999999999999964     4555666788999999999999999999999999876

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.25  E-value=7.9e-05  Score=59.95  Aligned_cols=60  Identities=15%  Similarity=0.352  Sum_probs=46.9

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      .+++|..|.+++.|+++| |++||+|+.+-..   .+ ....+.++..+|+.....|.|++.|.-
T Consensus        61 ~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v-~~~~~~~~~~~l~~~g~~v~l~v~r~~  120 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGE---SV-IGKTYSQVIALIQNSDTTLELSVMPKD  120 (126)
T ss_dssp             CCCCBCCCCSSSHHHHHT-CCSSCCCCEETTE---EC-SSCCHHHHHHHHHTCTTEEEEECCCCC
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            469999999999999999 9999999998632   11 112556777888876778899998854

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.22  E-value=0.0005  Score=65.15  Aligned_cols=59  Identities=17%  Similarity=0.137  Sum_probs=37.2

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCc
Q 022783          219 LREGLQLYRT----GKYEVAREKFESVLGSKPTPEESSVASYNVACC-Y--SKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       219 ~n~G~~L~k~----gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc-y--akLgq~eeALe~LekAIelG~  283 (292)
                      +++|..|...    +++++|+.+|+++.   |.   ...+++|+|.+ |  ...+++++|+..+++|++.|.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~  282 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ  282 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Confidence            4666666443    56666666666666   33   23457777776 3  456777777777777777663

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.19  E-value=0.0007  Score=69.46  Aligned_cols=82  Identities=23%  Similarity=0.440  Sum_probs=56.9

Q ss_pred             ccceEEEEecC---CceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHH
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~-------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~  152 (292)
                      .++.++|+|.|   +||+.+.-+.       +.+++|..|.|||-|+++|.|++||+|+.+...   .+ ......+++.
T Consensus        57 ~~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~---~v-~~~~~~~~~~  132 (721)
T 2xkx_A           57 EMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV---DV-REVTHSAAVE  132 (721)
T ss_pred             CceEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCE---EC-CCCCHHHHHH
Confidence            34567888865   7889887653       458999999999999999999999999998642   11 1111234455


Q ss_pred             HhhccCCceEEEEeec
Q 022783          153 TIRQRVGPLLMKMQKR  168 (292)
Q Consensus       153 ai~~r~g~v~l~l~r~  168 (292)
                      +|+.-...|.|++.|.
T Consensus       133 ~l~~~g~~v~l~v~R~  148 (721)
T 2xkx_A          133 ALKEAGSIVRLYVMRR  148 (721)
T ss_pred             HhhccccccceEEEec
Confidence            5654444566666554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.18  E-value=0.00047  Score=65.59  Aligned_cols=99  Identities=12%  Similarity=-0.019  Sum_probs=76.3

Q ss_pred             hhccccchhhHHH-HHH--HhhHHHHHhhHhHHHHH-HHHHHHHHc-C-CHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          187 ERNSGVISNRVRE-IQM--QNYMKKKEQKERREQDL-REGLQLYRT-G-KYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       187 ~rN~GvI~~~l~e-iqe--a~Y~kkk~lk~~~~~~~-n~G~~L~k~-g-dYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      ....|.+...++. +++  ..+.+.....++.++.+ .++..+... + +++++++.++++|+.+|++   ..+|+++.-
T Consensus        91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN---y~AW~~R~w  167 (349)
T 3q7a_A           91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN---YHTWAYLHW  167 (349)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence            3344444444442 333  35555555555556765 888888887 7 9999999999999999984   458999999


Q ss_pred             HHHhcCCHH--------HHHHHHHHHHHhCccChhh
Q 022783          261 CYSKLNQVK--------AGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       261 cyakLgq~e--------eALe~LekAIelG~~Df~~  288 (292)
                      ++.+++.++        ++|+.++++|+..+.||..
T Consensus       168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA  203 (349)
T 3q7a_A          168 LYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA  203 (349)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence            999999988        9999999999999888753

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.17  E-value=0.00036  Score=55.50  Aligned_cols=72  Identities=15%  Similarity=0.186  Sum_probs=52.0

Q ss_pred             CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC-ceEEEEeeccCC
Q 022783           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMKMQKRYGK  171 (292)
Q Consensus        93 KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g-~v~l~l~r~~~~  171 (292)
                      .++|+.+.  .+.+++|..|.+++.|+++| |++||+|+++-.   ..+- ...+.++...|+...+ ++.|++.|....
T Consensus        26 ~~~G~~l~--~~~~v~V~~V~~~spA~~aG-L~~GD~Il~InG---~~v~-~~~~~d~~~~i~~~~~~~v~l~V~~~~~~   98 (111)
T 1vae_A           26 GDLGFTLR--GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQG---VDCK-WLTVSEVMKLLKSFGGEEVEMKVVSLLDS   98 (111)
T ss_dssp             SCCSCCEE--SSSSCEECCCCTTSSHHHHH-CCTTCEEEEETT---EECS-SCCHHHHHHHHHHTTTSEECEEEECEECC
T ss_pred             CcccEEEe--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECC---EECC-CCCHHHHHHHHHhCCCceEEEEEEecCCC
Confidence            45676663  24579999999999999999 999999999863   2221 1245566777776555 489999887554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.06  E-value=0.0019  Score=60.78  Aligned_cols=80  Identities=14%  Similarity=-0.022  Sum_probs=63.3

Q ss_pred             hHHHHHhhHhHHHHH-HHHHHHHHcCC----------HHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC--HHHH
Q 022783          205 YMKKKEQKERREQDL-REGLQLYRTGK----------YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ--VKAG  271 (292)
Q Consensus       205 Y~kkk~lk~~~~~~~-n~G~~L~k~gd----------YeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq--~eeA  271 (292)
                      +.+.....+..+..+ .++.++...++          |++++..++++|..+|++   ..+|++++.++..+++  ++++
T Consensus        53 t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn---y~aW~hR~wlL~~l~~~~~~~E  129 (331)
T 3dss_A           53 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---YGTWHHRCWLLSRLPEPNWARE  129 (331)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHCSSCCHHHH
T ss_pred             HHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHhccCcccHHHH
Confidence            333344444445554 67777766655          799999999999999984   5689999999999994  9999


Q ss_pred             HHHHHHHHHhCccChh
Q 022783          272 LSALEDALLAGYEDFK  287 (292)
Q Consensus       272 Le~LekAIelG~~Df~  287 (292)
                      ++.|++++++...+|.
T Consensus       130 L~~~~k~l~~dprNy~  145 (331)
T 3dss_A          130 LELCARFLEADERNFH  145 (331)
T ss_dssp             HHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhCCCCHH
Confidence            9999999999888774

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.03  E-value=0.0046  Score=58.60  Aligned_cols=80  Identities=11%  Similarity=-0.036  Sum_probs=56.2

Q ss_pred             hhHHHHHhhHhHHH-HHHHHHHHHH-------cCCHH-------HHHHHHHHHHc-CCCCccchhHHHHHHHHHHHhcCC
Q 022783          204 NYMKKKEQKERREQ-DLREGLQLYR-------TGKYE-------VAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQ  267 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~-~~n~G~~L~k-------~gdYe-------eAIe~fekALe-ldP~~~d~a~a~YN~AccyakLgq  267 (292)
                      .|.++....+...+ +++.|..+.+       .|+++       +|++.|++|++ ++|++   ..+|++.+.++..+|+
T Consensus       260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~  336 (530)
T 2ooe_A          260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEESRMK  336 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCC
Confidence            45555444443333 3477777664       68876       88888888886 77753   4578888888888888


Q ss_pred             HHHHHHHHHHHHHhCccCh
Q 022783          268 VKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       268 ~eeALe~LekAIelG~~Df  286 (292)
                      +++|...+++|+++...++
T Consensus       337 ~~~A~~~~~~al~~~p~~~  355 (530)
T 2ooe_A          337 YEKVHSIYNRLLAIEDIDP  355 (530)
T ss_dssp             HHHHHHHHHHHHHSSSSCH
T ss_pred             HHHHHHHHHHHhCccccCc
Confidence            8888888888888766553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.98  E-value=0.0018  Score=61.47  Aligned_cols=67  Identities=10%  Similarity=0.015  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .-++..|..+.+.|++++|++.|+++|+++|+.  ...+|.+.+.++.++|++++|+..+++|++....
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            334588888888999999999999999998863  2347888888888888888888888888876543

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=96.96  E-value=0.0019  Score=50.43  Aligned_cols=58  Identities=21%  Similarity=0.488  Sum_probs=44.4

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      ..|++|..|.+++.|+++| |++||+|+++..   .   +...+.....+++ ...++.|++.|.-
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing---~---~v~~~~~~~~~l~-~g~~v~l~v~R~g   91 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNG---R---PLVDSSELQEAVL-TESPLLLEVRRGN   91 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETT---E---ECCSHHHHHHHHH-HCSSEEEEEEETT
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECC---E---ECCCHHHHHHHHh-CCCeEEEEEEECC
Confidence            4689999999999999999 999999999863   2   3334555556664 3457899998853

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=96.94  E-value=0.0023  Score=52.20  Aligned_cols=57  Identities=9%  Similarity=0.157  Sum_probs=43.4

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-CC-ceEEEEeec
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VG-PLLMKMQKR  168 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g-~v~l~l~r~  168 (292)
                      ..+++|..|.+++.|+ +| |++||+|+++..   .   +..++.....+|... +| ++.|++.|.
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG---~---~v~~~~~l~~~l~~~~~g~~v~l~v~R~  114 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDD---K---EIASSTDLQSALYNHSIGDTIKITYYRN  114 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEETT---E---ECCCHHHHHHHHHHSSTTCEEEEEEEET
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEECC---E---EcCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            4689999999999999 98 999999999763   2   333445566666654 44 689999884

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=96.93  E-value=0.00066  Score=60.36  Aligned_cols=76  Identities=16%  Similarity=0.413  Sum_probs=54.0

Q ss_pred             EEEEecC---CceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce-
Q 022783           87 YEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL-  161 (292)
Q Consensus        87 ~~v~l~K---PlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v-  161 (292)
                      ..|+|.|   .+|+.+..+.+ ++++|..|.+|+.|+++| |++||+|+.|-.   ..+ ....+..+...|+.....| 
T Consensus        11 r~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG---~~V-~~~s~~dl~~~l~~~g~~v~   85 (216)
T 2krg_A           11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNG---VCM-EGKQHGDVVSAIRAGGDETK   85 (216)
T ss_dssp             EEEEEECCSSSSCEEECCCSSSCSCBEEEECTTSHHHHHT-CCTTCBCCEETT---EEC-TTCCTHHHHHHHHHHCSEEE
T ss_pred             EEEEEEeCCCCceEEEEecCCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECC---EEC-CCCCHHHHHHHHHhcCCeEE
Confidence            4455544   47888876543 399999999999999999 999999999863   111 1124556677777655567 


Q ss_pred             EEEEee
Q 022783          162 LMKMQK  167 (292)
Q Consensus       162 ~l~l~r  167 (292)
                      .|++.|
T Consensus        86 ~l~V~R   91 (216)
T 2krg_A           86 LLVVDR   91 (216)
T ss_dssp             EEECCH
T ss_pred             EEEEEE
Confidence            777766

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=96.92  E-value=0.00069  Score=64.69  Aligned_cols=78  Identities=18%  Similarity=0.331  Sum_probs=55.7

Q ss_pred             EEEEecC----CceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeccccCccc--ccccchhhHHHHhhc
Q 022783           87 YEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMYTIRQ  156 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~G----~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~--w~a~~~g~~~~ai~~  156 (292)
                      -+|+|.|    +||+.+....+|    +++|..|.|||-|+++|.|++||+|+++..   ..+  |+..   .+...|+.
T Consensus       206 ~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG---~~v~~~~~~---~~~~~l~~  279 (388)
T 3suz_A          206 KELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSING---TSLVGLPLA---TCQGIIKG  279 (388)
T ss_dssp             EEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETT---EECSSCCST---THHHHTTT
T ss_pred             eEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECC---EEccCCCHH---HHHHHHHh
Confidence            4566655    699999886656    799999999999999999999999999873   222  3323   34456664


Q ss_pred             c--CCceEEEEeeccC
Q 022783          157 R--VGPLLMKMQKRYG  170 (292)
Q Consensus       157 r--~g~v~l~l~r~~~  170 (292)
                      .  ..++.|++.|...
T Consensus       280 ~~~~~~v~l~v~r~~~  295 (388)
T 3suz_A          280 LKNQTQVKLNIVSCPP  295 (388)
T ss_dssp             CTTCSCEEEEEEECCS
T ss_pred             ccCCCccccccccccc
Confidence            3  3458999988643

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=96.91  E-value=0.0028  Score=55.14  Aligned_cols=70  Identities=11%  Similarity=0.152  Sum_probs=51.8

Q ss_pred             CceeEEeee-----CCCCeEEEEeCCCCCcccccCccc-CCEEEEeccccCcccccccchhhHHHHhhcc-CCceEEEEe
Q 022783           94 PYGLKFAKG-----RDGGTYIDAIAPGGSADKTGMFQV-GDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQ  166 (292)
Q Consensus        94 PlGl~~~~~-----~~G~v~V~~v~~ggnA~k~g~i~v-GD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g~v~l~l~  166 (292)
                      -||+.+..-     ...|++|.+|.+++.|+++| +++ ||+|+.+.    ..+-..+++   ..+|+.. ..++.|.+.
T Consensus        96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~in----g~v~~~~~l---~~~l~~~~g~~v~l~v~  167 (209)
T 3rle_A           96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGAD----TVMNESEDL---FSLIETHEAKPLKLYVY  167 (209)
T ss_dssp             SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEES----SCCCSSSCH---HHHHHHTTTSCEEEEEE
T ss_pred             ccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECC----CEeCCHHHH---HHHHHhCCCCeEEEEEE
Confidence            478888742     23689999999999999999 999 99999984    334444444   4455543 456899999


Q ss_pred             eccCC
Q 022783          167 KRYGK  171 (292)
Q Consensus       167 r~~~~  171 (292)
                      |.-++
T Consensus       168 r~~~~  172 (209)
T 3rle_A          168 NTDTD  172 (209)
T ss_dssp             ETTTT
T ss_pred             ECCce
Confidence            97664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.81  E-value=0.0068  Score=50.21  Aligned_cols=72  Identities=14%  Similarity=0.106  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHH---HHHHHHHHHcCC-CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          214 RREQDLREGLQLYRTGKYEV---AREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       214 ~~~~~~n~G~~L~k~gdYee---AIe~fekALeld-P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .....|+.|..|.+...-.+   +|..++..+..+ |.  .....+|++|..|+++|+|++|+..|+..|+.-+++-+
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~--~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            34667899999988877766   999999999876 53  34567999999999999999999999999999887644

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=96.78  E-value=0.004  Score=47.97  Aligned_cols=59  Identities=10%  Similarity=0.131  Sum_probs=43.6

Q ss_pred             CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeecc
Q 022783          103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKRY  169 (292)
Q Consensus       103 ~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~~  169 (292)
                      ...|++|..|.+++.|++ | |++||+|+++-.   .   +...+.....++.. + ..++.|++.|.-
T Consensus         5 ~~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing---~---~v~~~~dl~~~l~~~~~g~~v~l~v~R~g   65 (100)
T 3i18_A            5 TYDGVYVMSVKDDVPAAD-V-LHAGDLITEIDG---N---AFKSSQEFIDYIHSKKVGDTVKINYKHGD   65 (100)
T ss_dssp             CCCCEEEEEECTTSGGGG-T-CCTTCEEEEETT---B---CCSSHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             eCCCEEEEEeCCCCchHH-C-CCCCCEEEEECC---E---ECCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            357999999999999995 7 999999999763   2   33444555666664 2 356888888853

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.76  E-value=0.0006  Score=50.85  Aligned_cols=64  Identities=6%  Similarity=-0.065  Sum_probs=46.3

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~  248 (292)
                      .+.++.|.+...+++.+++  .|.+...+.+.. .-++++|..+.+.|+|++|++.|+++|++.|+.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            3455666666666666664  454555444443 445799999999999999999999999988754

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=96.76  E-value=0.003  Score=58.12  Aligned_cols=68  Identities=21%  Similarity=0.321  Sum_probs=51.1

Q ss_pred             ceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cC-Cce
Q 022783           95 YGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPL  161 (292)
Q Consensus        95 lGl~~~~~-----------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~-g~v  161 (292)
                      |||.+..-           ...+++|..|.|++.|+++| |++||+|+++..   .   +...+.+...+|+. ++ .++
T Consensus       223 lGi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing---~---~v~~~~~l~~~l~~~~~g~~v  295 (318)
T 1te0_A          223 IGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDN---K---PAISALETMDQVAEIRPGSVI  295 (318)
T ss_dssp             CCEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTC-CCTTCCEEEETT---E---ECCCHHHHHHHHHTSCTTCEE
T ss_pred             ceeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCC-CCCCCEEEEECC---E---EcCCHHHHHHHHHhcCCCCEE
Confidence            68877652           24689999999999999999 999999999763   2   33344566677775 44 468


Q ss_pred             EEEEeecc
Q 022783          162 LMKMQKRY  169 (292)
Q Consensus       162 ~l~l~r~~  169 (292)
                      .|++.|.-
T Consensus       296 ~l~v~R~g  303 (318)
T 1te0_A          296 PVVVMRDD  303 (318)
T ss_dssp             EEEEESSS
T ss_pred             EEEEEECC
Confidence            99998853

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=96.74  E-value=0.0022  Score=49.05  Aligned_cols=58  Identities=16%  Similarity=0.321  Sum_probs=44.3

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CCceEEEEeecc
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKRY  169 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g~v~l~l~r~~  169 (292)
                      ..|++|..|.+++.|++ | |++||+|+++..   .   +...+.+...+|+..  ..++.|.+.|.-
T Consensus         4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG---~---~v~~~~~l~~~l~~~~~g~~v~l~v~R~g   63 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDG---Q---PINTSEQIVSYVREKQAGDRVRVTFIRDR   63 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-T-BCTTCEEEEETT---B---CCCCHHHHHHHHHHSCTTCCEEEEEEETT
T ss_pred             CCcEEEEEECCCChHHh-C-CCCCCEEEEECC---E---ECCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            45799999999999998 8 999999999863   2   333445666777754  457899998853

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=96.72  E-value=0.0015  Score=66.17  Aligned_cols=66  Identities=17%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeec
Q 022783           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (292)
Q Consensus        94 PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~  168 (292)
                      -||+.+.+. +||+.|..|.++|.|+++| |++||+|+++.   |..+ ..+++   ..+|+. + ..+|.|++.|.
T Consensus       486 ~lG~~~~~~-~~gv~V~~V~~~spA~~AG-L~~GD~I~aIn---G~~v-~~~~l---~~~l~~~~~g~~v~l~v~R~  553 (597)
T 4fgm_A          486 NFGAKYKAS-PQGLDVLNVYHDESAYHAG-LSAGDKIIAID---HLQA-TEQSV---KRILERYIPGDTVTIHAFRR  553 (597)
T ss_dssp             CCSEEEEEE-TTEEEEEEECTTSHHHHHT-CCTTCEEEEET---TEEC-CTTTH---HHHHTTCCTTCEEEEEEEET
T ss_pred             ccceEEecc-CCeEEEEEeCCCChHHHCC-CCCCCEEEEEC---CEEC-CHHHH---HHHHHhcCCCCEEEEEEEEC
Confidence            488888775 4689999999999999999 99999999986   3333 33444   444543 3 34678888885

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.72  E-value=0.0029  Score=60.92  Aligned_cols=60  Identities=8%  Similarity=0.013  Sum_probs=52.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       221 ~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      .|..+...|++++|+..+++||.++|+    ..+|.-++.++...|++++|++.+++|+.+.+.
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            455566689999999999999999985    356788899999999999999999999999865

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.0091  Score=53.70  Aligned_cols=65  Identities=14%  Similarity=0.127  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---ccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~---~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ..++|..+...|+|++|+..+++++.....   ......+|.+.+.+|..+|++++|...+++|+..-
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            358999999999999999999999843221   12345689999999999999999999999997763

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=96.60  E-value=0.0018  Score=48.65  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=46.7

Q ss_pred             cCCceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEe
Q 022783           92 EQPYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQ  166 (292)
Q Consensus        92 ~KPlGl~~~~~~~G---~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~  166 (292)
                      -+-+|+.-... +|   |+.|..+.|++.|+++| |++||+|+.+..   ..+   .++...+.++.. + ..++.|.+.
T Consensus         4 ~~~~~~~p~~~-~g~~~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing---~~v---~~~~d~~~~~~~~~~g~~v~l~v~   75 (87)
T 2i6v_A            4 FQYVRLSQVKR-DDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNG---LDL---TDPNVMNTLFQSMNEMTEMSLTVE   75 (87)
T ss_dssp             GGTEEEEEEEE-TTEEEEEEEEECSCHHHHHHTT-CCTTCEEEEETT---EET---TCHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             HhccceEEEee-CCeEEEEEEEeCCCCCHHHHCC-CCCCCEEEEECC---EEC---CCHHHHHHHHHhcCCCCEEEEEEE
Confidence            34466665543 44   67788888888889999 999999999863   333   334444455543 2 357899998


Q ss_pred             ec
Q 022783          167 KR  168 (292)
Q Consensus       167 r~  168 (292)
                      |.
T Consensus        76 R~   77 (87)
T 2i6v_A           76 RD   77 (87)
T ss_dssp             ET
T ss_pred             EC
Confidence            84

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=96.60  E-value=0.0012  Score=50.62  Aligned_cols=56  Identities=16%  Similarity=0.309  Sum_probs=42.7

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CCceEEEEeecc
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKRY  169 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g~v~l~l~r~~  169 (292)
                      |++|..|.|++.|++ | |++||+|+++..   .   +...+.+...+|+..  ..++.|++.|.-
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG---~---~v~~~~~l~~~l~~~~~g~~v~l~v~R~g   59 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADG---K---NYQSAEKLIDYISSKKAGDKVTLKIEREE   59 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETT---B---CCSSHHHHHHHHSSCCSSCEECEEEESSS
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECC---E---ECCCHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            688999999999999 8 999999999763   2   223445667777755  346899998853

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=96.58  E-value=0.0048  Score=56.69  Aligned_cols=70  Identities=20%  Similarity=0.329  Sum_probs=52.2

Q ss_pred             ceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCC-ceEEEEeeccCC
Q 022783           95 YGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVG-PLLMKMQKRYGK  171 (292)
Q Consensus        95 lGl~~~~~-~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g-~v~l~l~r~~~~  171 (292)
                      |||.+... ...+++|..|.+++.|+++| |++||+|+++..   .   +...+......|.. ++| ++.|++.|.-|+
T Consensus       231 lGi~~~~~~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing---~---~v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          231 LGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDD---R---PINSADALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             CCEEEESCSSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETT---E---ECCSHHHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             cceEeeeccCCCceEEEEECCCChHHHcC-CCCCCEEEEECC---E---ECCCHHHHHHHHHhcCCCCEEEEEEEECCCC
Confidence            78888764 35689999999999999999 999999999763   2   33344556666764 344 589999884444

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=96.52  E-value=0.0028  Score=48.69  Aligned_cols=57  Identities=9%  Similarity=0.155  Sum_probs=43.4

Q ss_pred             eEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC--CceEEEEeeccC
Q 022783          107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV--GPLLMKMQKRYG  170 (292)
Q Consensus       107 v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~--g~v~l~l~r~~~  170 (292)
                      .+|.+|.+++-|+++| |++||+|+++..   .   +...+..+..+|....  .++.|.+.|.-+
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing---~---~v~~~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDG---I---ETPDWDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETT---E---ECSSHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECC---E---ECCCHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            4689999999999999 999999999863   2   3344555666676543  478999999764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.42  E-value=0.012  Score=65.61  Aligned_cols=59  Identities=10%  Similarity=-0.005  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .-+++.|.++.+.|+|++||++|.+|  -+|      ..|++++-|+.++|++++|++.|..|++..
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA--dD~------say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDP------SSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc--CCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            44569999999999999999999997  222      469999999999999999999999998765

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=96.39  E-value=0.0062  Score=57.70  Aligned_cols=71  Identities=15%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             ceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC-ceEEEEeeccC
Q 022783           95 YGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMKMQKRYG  170 (292)
Q Consensus        95 lGl~~~~~--~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g-~v~l~l~r~~~  170 (292)
                      +|+.|...  .+++++|..|.+++.|+++| |++||+|+++-..   .+-. .....+...|+...| +|.|++.|.-.
T Consensus        87 iG~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~---~v~~-~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGT---AVKG-MSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             CSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECTT-CCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            67777654  36799999999999999999 9999999998642   1111 112345566765544 47888887644

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.33  E-value=0.012  Score=49.41  Aligned_cols=72  Identities=7%  Similarity=0.067  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783          215 REQDLREGLQLYRTG---KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       215 ~~~~~n~G~~L~k~g---dYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~  288 (292)
                      ...-|+.|..|.+..   +..++|..++..+..+|.  .....+|.+|..|.++|+|++|+..++..++.-+++-+.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            456688888887764   456899999999988775  346679999999999999999999999999998776543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.31  E-value=0.0073  Score=52.41  Aligned_cols=61  Identities=23%  Similarity=0.357  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCC---CCc-------------------cchhHHHHHHHHHHHhcCCHHHHHHH
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSK---PTP-------------------EESSVASYNVACCYSKLNQVKAGLSA  274 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeld---P~~-------------------~d~a~a~YN~AccyakLgq~eeALe~  274 (292)
                      ..+..|..+|..++|..|+..|.+||.+.   ++.                   .....+-|-+|.||.+++++++||..
T Consensus        65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~  144 (167)
T 3ffl_A           65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI  144 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence            34699999999999999999999998421   110                   00124689999999999999999999


Q ss_pred             HHH
Q 022783          275 LED  277 (292)
Q Consensus       275 Lek  277 (292)
                      |+.
T Consensus       145 Le~  147 (167)
T 3ffl_A          145 LDG  147 (167)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            874

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.26  E-value=0.019  Score=43.61  Aligned_cols=72  Identities=10%  Similarity=-0.001  Sum_probs=47.6

Q ss_pred             HHhhccccchhhHHHHHHHhhHHHHH--h-hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQNYMKKKE--Q-KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea~Y~kkk~--l-k~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~A  259 (292)
                      +..++.|+...+..-++++.-.....  . .....-..++|..++++|++++|+..|+++|.++|++   ..+.+|++
T Consensus        13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~n~~   87 (104)
T 2v5f_A           13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRANGNLK   87 (104)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHH
T ss_pred             HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHhhHH
Confidence            45566666666555555542111100  0 0112234599999999999999999999999999984   34588887

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=96.26  E-value=0.0032  Score=47.05  Aligned_cols=56  Identities=16%  Similarity=0.433  Sum_probs=42.3

Q ss_pred             eEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC-CceEEEEeecc
Q 022783          107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRY  169 (292)
Q Consensus       107 v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~-g~v~l~l~r~~  169 (292)
                      ++|..|.+++.|+++| +++||+|+++..      .+...+.++..++.... .++.|++.|.-
T Consensus         6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing------~~v~~~~~~~~~l~~~~g~~v~l~v~R~g   62 (91)
T 2zpm_A            6 PVLENVQPNSAASXAG-LQAGDRIVXVDG------QPLTQWVTFVMLVRDNPGXSLALEIERQG   62 (91)
T ss_dssp             CBCSEECTTSHHHHTT-CCTTCEEEEETT------EECCCHHHHHHHHHHCTTCCEEEEEEETT
T ss_pred             eEEEEECCCChHHhcC-CCCCCEEEEECC------eEcCCHHHHHHHHhcCCCCeEEEEEEECC
Confidence            5788999999999999 999999999863      23344556666676554 47889998853

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.22  E-value=0.034  Score=47.18  Aligned_cols=73  Identities=5%  Similarity=0.050  Sum_probs=60.7

Q ss_pred             HhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          213 ERREQDLREGLQLYRTGK---YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       213 ~~~~~~~n~G~~L~k~gd---YeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ......|+.|..|.+..+   -.++|..++..+..+|.  .....+|.+|..|+++|+|++|+..|+..|+.-+++-+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            344567899999977654   45799999999988785  34567999999999999999999999999999887644

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=96.21  E-value=0.023  Score=45.97  Aligned_cols=78  Identities=12%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             ceEEEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CC
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG  159 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g  159 (292)
                      +.++|+|.|   .+|+.+..+.. +.+|..|.+.  +..+| |++||+|+.+..    +-.......++..+|+..  ..
T Consensus        12 ~~~~V~L~Kg~~G~GFsI~~~~~-g~~V~~I~~~--~~~aG-L~~GD~Il~VNG----~~v~~~~h~evv~~lk~~~~G~   83 (113)
T 3soe_A           12 LLVTIPLIKGPKGFGFAIADSPT-GQKVKMILDS--QWCQG-LQKGDIIKEIYH----QNVQNLTHLQVVEVLKQFPVGA   83 (113)
T ss_dssp             EEEEEEEECBTTBSSEEEEEETT-EEEEEEESCG--GGSTT-CCTTCEEEEETT----EECTTSCHHHHHHHHHHSCTTC
T ss_pred             CEEEEEEEECCCcccEEEeCCCC-CcEEEEecCh--HHhCC-CCCCCEEEEECC----EECCCCCHHHHHHHHHcCCCCC
Confidence            557888875   68888865443 5679899883  55566 999999999862    222222345677888864  34


Q ss_pred             ceEEEEeeccC
Q 022783          160 PLLMKMQKRYG  170 (292)
Q Consensus       160 ~v~l~l~r~~~  170 (292)
                      +|.|++.|.-.
T Consensus        84 ~v~L~V~R~g~   94 (113)
T 3soe_A           84 DVPLLILRGGP   94 (113)
T ss_dssp             EEEEEEEESSC
T ss_pred             EEEEEEEECCc
Confidence            78999999543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.20  E-value=0.025  Score=42.97  Aligned_cols=52  Identities=6%  Similarity=-0.057  Sum_probs=40.1

Q ss_pred             HHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhH
Q 022783          202 MQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV  253 (292)
Q Consensus       202 ea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~  253 (292)
                      ...+.+...+.++. ...+.+|+.+++.|+|++||..|+++|+.+|.......
T Consensus        29 ~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~   81 (93)
T 3bee_A           29 SLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT   81 (93)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred             HHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            34566666666665 44569999999999999999999999999998434433

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=96.17  E-value=0.0099  Score=54.97  Aligned_cols=58  Identities=19%  Similarity=0.365  Sum_probs=45.5

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      ..|++|.+|.+++.|+++| |++||+|+++..   ..+   ..+.+...+|+. ..++.|++.|.-
T Consensus       255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~ing---~~v---~~~~~l~~~l~~-~~~v~l~v~R~g  312 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGE---QMV---QNAEDVYEAVRT-QSQLAVQIRRGR  312 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETT---EEC---CSHHHHHHHHTT-CSSEEEEEEETT
T ss_pred             CCCeEEEEeCcCChHHHCC-CCCCCEEEEECC---EEc---CCHHHHHHHHhC-CCeEEEEEEECC
Confidence            3589999999999999999 999999999763   333   344555666765 478999998853

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=96.16  E-value=0.0052  Score=57.71  Aligned_cols=69  Identities=17%  Similarity=0.372  Sum_probs=51.4

Q ss_pred             ceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-CC-ce
Q 022783           95 YGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VG-PL  161 (292)
Q Consensus        95 lGl~~~~~-----------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g-~v  161 (292)
                      ||+.+..-           ...|++|.+|.+++.|+++| |++||+|+++-.   .   +.....+....|+.. +| .|
T Consensus       242 lGv~~~~~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing---~---~v~~~~~l~~~l~~~~~g~~v  314 (345)
T 3stj_A          242 LGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNG---K---PLNSFAELRSRIATTEPGTKV  314 (345)
T ss_dssp             CCEEEEECCHHHHHHTTCSCCSSEEEEEECTTSHHHHHT-CCTTCEECEETT---E---ECSCHHHHHHHHHTSCTTCEE
T ss_pred             cceeeEeecHHHHHhcCCCCCceEEEEEeccCChHHHcC-CCCCCEEEEECC---E---ECCCHHHHHHHHHhcCCCCEE
Confidence            67777542           23589999999999999999 999999999763   1   344556667777653 44 67


Q ss_pred             EEEEeeccC
Q 022783          162 LMKMQKRYG  170 (292)
Q Consensus       162 ~l~l~r~~~  170 (292)
                      .|++.|.--
T Consensus       315 ~l~v~R~g~  323 (345)
T 3stj_A          315 KLGLLRNGK  323 (345)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEECCE
Confidence            899988543

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=96.09  E-value=0.0088  Score=46.40  Aligned_cols=56  Identities=13%  Similarity=0.168  Sum_probs=38.6

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeec
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~  168 (292)
                      |+.|..+.|++.|+++| |++||+|+.+-   |..+-   ++.....++.. + ..++.|.+.|.
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~in---g~~v~---~~~d~~~~~~~~~~g~~v~l~v~R~   95 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALN---GLDLT---DPNVMNTLFQSMNEMTEMSLTVERD   95 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEET---TEETT---STTHHHHHHHHHTTCSEEEEEEEET
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEEC---CEECC---CHHHHHHHHHhcCCCCeEEEEEEEC
Confidence            56677777777779999 99999999986   33333   33334444542 3 45789999884

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=95.98  E-value=0.009  Score=57.67  Aligned_cols=59  Identities=14%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccC
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG  170 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~  170 (292)
                      .+++|.+|.+++.|+++| |++||+|+.+..      .+...+.+...+|+...+++.|+++|.-.
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng------~~v~~~~~~~~~l~~~~~~v~l~v~R~g~  421 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNR------DRVNSIAEMRKVLAAKPAIIALQIVRGNE  421 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHhCCCeEEEEEEECCE
Confidence            489999999999999999 999999999863      24456677778888888899999999643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.93  E-value=0.033  Score=52.31  Aligned_cols=88  Identities=15%  Similarity=-0.031  Sum_probs=68.4

Q ss_pred             hhHHHHHHH--hhHHHHHhhHhHHH---HHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          195 NRVREIQMQ--NYMKKKEQKERREQ---DLREGLQLYRT-----GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       195 ~~l~eiqea--~Y~kkk~lk~~~~~---~~n~G~~L~k~-----gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      ..+.....+  ...++.++.++..+   +.-+|..|++.     |+.++|..+|++||+++|+.  ....+|..|-.++.
T Consensus       174 ~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~--~id~~v~YA~~l~~  251 (301)
T 3u64_A          174 ALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH--DPDHHITYADALCI  251 (301)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT--CSHHHHHHHHHTTT
T ss_pred             HHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHH
Confidence            344555443  66677777776422   35889998884     99999999999999999962  13458888999988


Q ss_pred             -cCCHHHHHHHHHHHHHhCcc
Q 022783          265 -LNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       265 -Lgq~eeALe~LekAIelG~~  284 (292)
                       +|++++|...|++|+.+..+
T Consensus       252 ~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          252 PLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TTTCHHHHHHHHHHHHHCCGG
T ss_pred             hcCCHHHHHHHHHHHHcCCCC
Confidence             49999999999999998755

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=95.67  E-value=0.024  Score=45.90  Aligned_cols=57  Identities=18%  Similarity=0.315  Sum_probs=41.2

Q ss_pred             eCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cC-CceEEEEee
Q 022783          102 GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQK  167 (292)
Q Consensus       102 ~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~-g~v~l~l~r  167 (292)
                      ...+++.|..|.+++.|+++  |++||+|+++-.   .   +...+.+...++.. +. .++.|++ |
T Consensus        22 ~~~~gv~V~~V~~~spA~~a--L~~GD~Il~InG---~---~v~~~~dl~~~l~~~~~g~~v~l~V-R   80 (125)
T 2hga_A           22 HQPDGVQIDSVVPGSPASKV--LTPGLVIESING---M---PTSNLTTYSAALKTISVGEVINITT-D   80 (125)
T ss_dssp             -CCCCEEEEEECSSSGGGGT--SCTTCEEEEETT---E---ECSSHHHHHHHHTTCCTTCEEEEEE-T
T ss_pred             CCCCceEEEEECCCChHHHh--cCCCCEEEEECC---E---EcCCHHHHHHHHHhcCCCCEEEEEE-E
Confidence            35678999999999999988  999999999863   2   33344455556663 43 4678888 5

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=95.64  E-value=0.014  Score=54.55  Aligned_cols=69  Identities=25%  Similarity=0.428  Sum_probs=50.7

Q ss_pred             ceeEEeeeCC------CCeEEEEeCCCCCcccccCccc-----------CCEEEEeccccCcccccccchhhHHHHhhc-
Q 022783           95 YGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQV-----------GDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-  156 (292)
Q Consensus        95 lGl~~~~~~~------G~v~V~~v~~ggnA~k~g~i~v-----------GD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-  156 (292)
                      |||.+.....      .|++|.+|.+++.|+++| |++           ||+|+++-.   .   +...+.+.+.+|.. 
T Consensus       235 lGi~~~~~~~~~~~~~~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing---~---~v~~~~dl~~~l~~~  307 (348)
T 3qo6_A          235 LGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNG---T---KVSNGSDLYRILDQC  307 (348)
T ss_dssp             CCCEECCTTTTTTTTCSSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETT---B---CCSSSHHHHHHHTTC
T ss_pred             cCcEEccchhhhhcCCceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECC---E---EeCCHHHHHHHHHhC
Confidence            7887754321      489999999999999999 888           999999753   2   33445566777754 


Q ss_pred             cCC-ceEEEEeeccC
Q 022783          157 RVG-PLLMKMQKRYG  170 (292)
Q Consensus       157 r~g-~v~l~l~r~~~  170 (292)
                      ++| .|.|++.|.--
T Consensus       308 ~~g~~v~l~v~R~g~  322 (348)
T 3qo6_A          308 KVGDEVTVEVLRGDH  322 (348)
T ss_dssp             CTTCEEEEEEECSSS
T ss_pred             CCcCEEEEEEEECCE
Confidence            444 67999988543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=95.51  E-value=0.0095  Score=58.67  Aligned_cols=50  Identities=18%  Similarity=0.229  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA  278 (292)
                      +.+.|..+++.|+|++|+..|+++    +       .|.++|-|+.++|++++|++++.+|
T Consensus       125 ~~~IGd~~~~~g~yeeA~~~Y~~a----~-------n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          125 IQQVGDRCYDEKMYDAAKLLYNNV----S-------NFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             ------------CTTTHHHHHHHT----T-------CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh----h-------hHHHHHHHHHHhccHHHHHHHHHHc
Confidence            346666666666666666666655    2       1666666666666666666666666

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=95.37  E-value=0.016  Score=56.31  Aligned_cols=57  Identities=12%  Similarity=0.241  Sum_probs=48.0

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      +|++|.+|.+++.|+++| |++||+|+.+..      .+..++.+...+|+....++.|.+.|.
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng------~~v~~~~~~~~~l~~~~~~v~l~v~R~  442 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANK------KPVTDVKSLQTIAQEKKKELLVQVLRG  442 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETT------EECCSHHHHHHHTTSSCSCEEEEEEET
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHhcCCCeEEEEEEEC
Confidence            489999999999999999 999999999863      345566677788887777899999885

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=95.21  E-value=0.022  Score=49.32  Aligned_cols=58  Identities=9%  Similarity=0.138  Sum_probs=39.0

Q ss_pred             CCeEEEEeCCCCCcccccCcccC-CEEEEeccccCcccccccchhhHHHHhhcc-CCceEEEEeec
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVG-DKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR  168 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vG-D~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g~v~l~l~r~  168 (292)
                      .|++|..|.|++-|+++| |++| |+|+++...   .+-...++  ....++.. ..++.|++.|.
T Consensus        16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~---~v~~~~~~--~~~~~~~~~g~~v~l~v~R~   75 (209)
T 3rle_A           16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSINGS---RLNKDNDT--LKDLLKANVEKPVKMLIYSS   75 (209)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTTEEEEEETTE---ECCSSSSH--HHHHHHHTTTSCEEEEEEET
T ss_pred             CEEEEEEECCCCHHHHCC-CCcCCeEEEEECCE---ECcCHHHH--HHHHHhcCCCCEEEEEEEec
Confidence            389999999999999999 9999 999997642   22111122  11223333 35678888774

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=95.17  E-value=0.02  Score=47.43  Aligned_cols=45  Identities=20%  Similarity=0.347  Sum_probs=36.7

Q ss_pred             ceEEEEec----CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783           85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (292)
Q Consensus        85 ~~~~v~l~----KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa  135 (292)
                      .+.+++|.    ..||+.+.   +|  +|..|.+++.|+++| +++||+|+.+..
T Consensus        88 ~~~~v~l~~~~~~~lG~~~~---~g--~v~~v~~~s~a~~aG-l~~GD~I~~ing  136 (166)
T 1w9e_A           88 FERTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEING  136 (166)
T ss_dssp             TCEEEEEECCTTSCCSEEEE---TT--EEEEECTTSHHHHTT-CCSSEEEEEETT
T ss_pred             CcEEEEEecCCCCcEeEEEe---CC--EEEEEccCCHHHHcC-CCCCCEEEEECC
Confidence            34667776    45888776   34  899999999999999 999999999764

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=95.16  E-value=0.033  Score=53.79  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=40.1

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      .++|..|.|++.|+++| |++||+|+++-..   .+-.. .   +...|+....+|.|++.|.-
T Consensus        91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~---~v~~~-~---~~~~l~~~g~~v~l~v~R~g  146 (403)
T 3k50_A           91 NALISYVVPGSPAEEAG-LQRGHWIMMMNGD---YITKK-V---ESELLQGSTRQLQIGVYKEV  146 (403)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTCEEEEETTB---CBCTT-T---GGGGTSCSCEEEEEEEEEEE
T ss_pred             eEEEEEeCCCChHHHcC-CCCCCEEEEECCE---Eccch-h---HHHHhhCCCCEEEEEEEeCC
Confidence            48899999999999999 9999999998742   22111 1   33456553446788887753

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=95.09  E-value=0.032  Score=54.28  Aligned_cols=70  Identities=19%  Similarity=0.321  Sum_probs=51.3

Q ss_pred             ceeEEeee-----------CC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cC-Cc
Q 022783           95 YGLKFAKG-----------RD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GP  160 (292)
Q Consensus        95 lGl~~~~~-----------~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~-g~  160 (292)
                      ||+.+..-           .. .|++|..|.|++.|+++| |++||+|+++-.   .   +.........+|.. ++ ..
T Consensus       260 lGv~~~~~~~~~a~~~gl~~~~~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG---~---~v~~~~~l~~~l~~~~~g~~  332 (451)
T 3pv2_A          260 MGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAG-LKAGDIITQIND---T---KITQATQVKTTISLLRVGST  332 (451)
T ss_dssp             CCEEEEECCHHHHHHTTSCTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETT---E---ECCSHHHHHHHHHTSCTTCE
T ss_pred             ccceEEeccHHHHHhcCCCcCCceEEEEecCCCChHHHcC-CCCCCEEEEECC---E---EcCCHHHHHHHHHhcCCCCE
Confidence            78877642           12 689999999999999999 999999999763   2   33445556666664 33 46


Q ss_pred             eEEEEeeccCC
Q 022783          161 LLMKMQKRYGK  171 (292)
Q Consensus       161 v~l~l~r~~~~  171 (292)
                      +.|++.|.-..
T Consensus       333 v~l~V~R~g~~  343 (451)
T 3pv2_A          333 VKIIVERDNKP  343 (451)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCEE
Confidence            78999885433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=94.88  E-value=0.028  Score=55.33  Aligned_cols=65  Identities=18%  Similarity=0.141  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-cchhHHHH-----------------------HHHHHHHhcCCHHHH
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-EESSVASY-----------------------NVACCYSKLNQVKAG  271 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~-~d~a~a~Y-----------------------N~AccyakLgq~eeA  271 (292)
                      ..+..+|..|+++|+|++|++.|.+|.  +|.. .....++.                       .+..+|.+.|++++|
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEa  226 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL  226 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHH
Confidence            345689999999999999999999993  4410 00001111                       122468889999999


Q ss_pred             HHHHHHHHHhC
Q 022783          272 LSALEDALLAG  282 (292)
Q Consensus       272 Le~LekAIelG  282 (292)
                      +..|++|+.+-
T Consensus       227 i~lLe~aL~le  237 (449)
T 1b89_A          227 ITMLEAALGLE  237 (449)
T ss_dssp             HHHHHHHTTST
T ss_pred             HHHHHHHhCCc
Confidence            99999998664

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.72  E-value=0.033  Score=47.32  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE  250 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d  250 (292)
                      ++-.+++|+.+++.|+|++|+.+++++|+++|++..
T Consensus        71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            444579999999999999999999999999998643

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=94.70  E-value=0.042  Score=52.99  Aligned_cols=59  Identities=15%  Similarity=0.360  Sum_probs=44.1

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeeccC
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKRYG  170 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~~~  170 (292)
                      .|++|.+|.+++.|+++| |++||+|+++..   .   +...+.....++.. . ...+.|++.|.--
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG---~---~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~  323 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNG---K---PLNSFAELRSRIATTEPGTKVKLGLLRNGK  323 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEECC---E---ECCCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 999999999763   2   33344555566653 2 3467888888543

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=94.55  E-value=0.0063  Score=59.19  Aligned_cols=67  Identities=15%  Similarity=0.347  Sum_probs=0.0

Q ss_pred             ceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783           95 YGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus        95 lGl~~~~~-~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      +|+.+..- ...+++|.+|.+++.|+++| |++||+|+.+-.      ++...+.+...+|+...+++.|.+.|.
T Consensus       372 ~G~~l~~~~~~~gv~V~~V~~gspA~~aG-L~~GDiI~~vng------~~v~~~~~l~~~l~~~~~~v~l~v~R~  439 (448)
T 1ky9_A          372 EGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQ------QAVKNIAELRKVLDSKPSVLALNIQRG  439 (448)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             cceEeeccCCCCeEEEEEecCCCHHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            36666431 34589999999999999999 999999998763      233445555667777777888888885

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.39  E-value=0.12  Score=49.65  Aligned_cols=71  Identities=10%  Similarity=0.016  Sum_probs=49.3

Q ss_pred             HhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCccch--------------------------------------
Q 022783          213 ERREQDLREGLQLYRT---GKYEVAREKFESVLGSKPTPEES--------------------------------------  251 (292)
Q Consensus       213 ~~~~~~~n~G~~L~k~---gdYeeAIe~fekALeldP~~~d~--------------------------------------  251 (292)
                      ..+++.+-+|..+...   .++.+|+.+|++||+++|++...                                      
T Consensus       194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~  273 (372)
T 3ly7_A          194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL  273 (372)
T ss_dssp             GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccC
Confidence            3457777777777654   34578999999999999975211                                      


Q ss_pred             ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          252 ---SVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       252 ---a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                         +.+|-=.|.++...|++++|+..+++|+.++.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~  308 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM  308 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence               01111134455568999999999999999984

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=94.33  E-value=0.0075  Score=55.79  Aligned_cols=57  Identities=18%  Similarity=0.332  Sum_probs=0.0

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      ..|++|.+|.+++.|+++| |++||+|+++-.   ..+   ..+.++..+|+. ..+|.|++.|.
T Consensus       253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing---~~v---~~~~~~~~~l~~-~~~v~l~v~R~  309 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGG-LKENDVIISING---QSV---VSANDVSDVIKR-ESTLNMVVRRG  309 (332)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcC-CCCCCEEEEECC---EEC---CCHHHHHHHHhC-CCeEEEEEEEC
Confidence            3589999999999999999 999999999753   222   334444455553 45688888884

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.29  E-value=0.12  Score=57.72  Aligned_cols=79  Identities=15%  Similarity=0.042  Sum_probs=48.1

Q ss_pred             hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc----------------------cchhHHHHHHHHH
Q 022783          204 NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP----------------------EESSVASYNVACC  261 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~----------------------~d~a~a~YN~Acc  261 (292)
                      .|..+++.-.+...+..+|..|.++|+|++|++++.+|...++=.                      ...+.-+..+..+
T Consensus      1210 ~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~y 1289 (1630)
T 1xi4_A         1210 MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY 1289 (1630)
T ss_pred             CHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHH
Confidence            444444444444556677777777788888888887774433200                      0001124455667


Q ss_pred             HHhcCCHHHHHHHHHHHHHhC
Q 022783          262 YSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG  282 (292)
                      |..+|.+++||..|++||.+.
T Consensus      1290 Ye~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A         1290 YQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred             HHHcCCHHHHHHHHHHHhccC
Confidence            777888888888888877654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=94.09  E-value=0.22  Score=46.55  Aligned_cols=67  Identities=7%  Similarity=-0.124  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ...+-.|.++...|++++|+..+.++|+.+|+. +...++.-.+-+|.++|+.+.|.+.+++..+.-.
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAE-GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            345689999999999999999999999998832 3345688889999999999999999999877743

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.55  E-value=0.11  Score=48.90  Aligned_cols=53  Identities=11%  Similarity=0.016  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCcc
Q 022783          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-----NQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       231 YeeAIe~fekALeldP~~~d~a~a~YN~AccyakL-----gq~eeALe~LekAIelG~~  284 (292)
                      ..+|...+++||+++|+. ..+.+|.-++..|...     |+.++|..++++||++...
T Consensus       179 l~~A~a~lerAleLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~  236 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA  236 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC
Confidence            578999999999999984 2356899999999996     9999999999999999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=93.31  E-value=0.12  Score=53.56  Aligned_cols=69  Identities=9%  Similarity=0.124  Sum_probs=50.3

Q ss_pred             CceeEEeeeCCCCeEEEEeCCC--------CCcccccC-cccCCEEEEeccccCcccccccchhhHHHHhhccCC-ceEE
Q 022783           94 PYGLKFAKGRDGGTYIDAIAPG--------GSADKTGM-FQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLM  163 (292)
Q Consensus        94 PlGl~~~~~~~G~v~V~~v~~g--------gnA~k~g~-i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g-~v~l  163 (292)
                      -+|+.|.. .+|+++|..|.+|        +.|+++|. |+ ||+|+++-..   .+   .....+...|+...| .|.|
T Consensus       738 g~G~~~~~-~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~---~~---~~~~~~~~~~~~~~g~~v~l  809 (1045)
T 1k32_A          738 RIACDFKL-DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGE---TV---GAGSNIYRVLSEKAGTSARI  809 (1045)
T ss_dssp             BCSEEEEE-ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTE---EC---BTTBCHHHHHHTTTTSEEEE
T ss_pred             eecEEEEE-eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCE---Ec---cchhhHHHhhcCCCCCEEEE
Confidence            46788876 4688999999998        99999994 89 9999998642   22   222245567776655 6799


Q ss_pred             EEeeccC
Q 022783          164 KMQKRYG  170 (292)
Q Consensus       164 ~l~r~~~  170 (292)
                      ++.|.-+
T Consensus       810 ~v~r~~~  816 (1045)
T 1k32_A          810 RLSGKGG  816 (1045)
T ss_dssp             EEECSSS
T ss_pred             EEECCCC
Confidence            9988653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.31  E-value=0.13  Score=53.61  Aligned_cols=54  Identities=22%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (292)
Q Consensus       222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA  278 (292)
                      +.-|...|+|+-|+++-.+|...-|.  + -..||++|-||.++|+|+.||-.|+-+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPs--e-F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALD--S-FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSS--C-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCch--h-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            33346789999999999999999997  3 457999999999999999999998876

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=92.33  E-value=0.025  Score=53.93  Aligned_cols=55  Identities=22%  Similarity=0.425  Sum_probs=0.0

Q ss_pred             EEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEee
Q 022783          108 YIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK  167 (292)
Q Consensus       108 ~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r  167 (292)
                      +|..|.+||.|+++| +++||+|+++...   .+ .......+..+|+...+.+.|++..
T Consensus       318 ~I~~V~~gs~A~~aG-L~~GD~Il~VNg~---~v-~~~s~~~~~~~l~~~~~~v~L~V~p  372 (388)
T 3suz_A          318 IICSLMRGGIAERGG-VRVGHRIIEINGQ---SV-VATAHEKIVQALSNSVGEIHMKTMP  372 (388)
T ss_dssp             ------------------------------------------------------------
T ss_pred             EEEEeecCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCCeEEEEEEe
Confidence            899999999999999 9999999997632   22 1112245566777777778777643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.95  E-value=0.22  Score=41.11  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch
Q 022783          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (292)
Q Consensus       214 ~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~  251 (292)
                      +++-.+.+|+.+|+.|+|++|+..++..|+++|++...
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            34445799999999999999999999999999986443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=91.93  E-value=0.6  Score=43.52  Aligned_cols=58  Identities=12%  Similarity=0.032  Sum_probs=44.6

Q ss_pred             HHHHH--HHHcC--CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          220 REGLQ--LYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       220 n~G~~--L~k~g--dYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +++..  ....|  +|++|+..|+++++..|+. ....+++|   |+..+|++++|...|++.+++
T Consensus       179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~-~~~~lLln---~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          179 NLAESYIKFATNKETATSNFYYYEELSQTFPTW-KTQLGLLN---LHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH-HHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc-ccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence            55444  44444  9999999999998888852 12456788   899999999999999976665

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=91.82  E-value=0.33  Score=48.65  Aligned_cols=39  Identities=21%  Similarity=0.417  Sum_probs=31.6

Q ss_pred             ceeEEeee------------CCCCeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783           95 YGLKFAKG------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (292)
Q Consensus        95 lGl~~~~~------------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa  135 (292)
                      ||+.+..-            .+.|++|.+|.|++.|+++  |++||+|+.+-.
T Consensus       255 LGv~~~~~~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~a--l~~GDvI~~idg  305 (539)
T 4fln_A          255 LGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASKV--LKEGDVIVSFDD  305 (539)
T ss_dssp             CCEEEEECCCHHHHHHHTCSSSBCEEEEEECTTSGGGGT--CCTTCEEEEETT
T ss_pred             cceEEEecCCHHHHHhcCCCCcCceeeecccCCChHHhC--ccCCCEEEEECC
Confidence            78877653            2359999999999999864  999999999653

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=91.77  E-value=0.13  Score=49.96  Aligned_cols=58  Identities=17%  Similarity=0.373  Sum_probs=43.5

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeecc
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKRY  169 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~~  169 (292)
                      .+++|.+|.+++.|+++| |++||+|+++-.   .   +...+..+..+|.. + ...+.|++.|.-
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG---~---~v~~~~~l~~~l~~~~~g~~v~l~v~R~g  345 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNG---K---PISSFAALRAQVGTMPVGSKLTLGLLRDG  345 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSS---S---BCCSSHHHHHHTTSSBTTCCCEEEEESSS
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECC---E---EcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999999 999999998753   2   23334455666664 3 346788888853

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.56  E-value=0.65  Score=38.81  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~  251 (292)
                      ++-.+.+|+.+|+.|+|++|+.+-+..|+++|++...
T Consensus        78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            4445799999999999999999999999999987443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.66  E-value=0.87  Score=39.33  Aligned_cols=64  Identities=13%  Similarity=-0.026  Sum_probs=52.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcC---CCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGS---KPTP---EESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALel---dP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ++....++..|.|+.|+-..+.++.+   +|+.   .....++++.|-.+...++|..|+..|++||...
T Consensus        24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            47778889999999999999997744   3331   2235578999999999999999999999998764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.64  E-value=1.1  Score=37.80  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~  251 (292)
                      ++-.+.+|+.+|++|+|++|..+-+..|+++|++...
T Consensus        77 RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           77 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            3444699999999999999999999999999987444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=87.48  E-value=4.3  Score=39.36  Aligned_cols=61  Identities=10%  Similarity=-0.035  Sum_probs=49.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--cCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekAL--eldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      -.-..+.+.|+.++|++.|++..  .+.|+    ...|.-+-.+|.+.|++++|++.|++--+.|..
T Consensus       145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd----~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~  207 (501)
T 4g26_A          145 PALFGFCRKGDADKAYEVDAHMVESEVVPE----EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQ  207 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCC
Confidence            34455678999999999999988  46676    345777788899999999999999998888754

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=86.52  E-value=3.8  Score=34.97  Aligned_cols=65  Identities=15%  Similarity=0.173  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc--cc-h--hHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP--EE-S--SVAS-YNVACCYSKLNQVKAGLSALEDALL  280 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~--~d-~--a~a~-YN~AccyakLgq~eeALe~LekAIe  280 (292)
                      ...|..|+.+|..|+|=+|-+.++.+....+..  +. .  +.+. .=.|+.|...|+..-|...+.+|+.
T Consensus        33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~  103 (161)
T 2ijq_A           33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ  103 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            456789999999999999999999999776543  11 1  4455 6677888889999999999999977

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=85.78  E-value=1.1  Score=45.73  Aligned_cols=76  Identities=7%  Similarity=-0.021  Sum_probs=60.2

Q ss_pred             hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHH-HHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAR-EKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAI-e~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      .|.++-.......+. +.-+.-+...|+.++|+ +.|++|+..+|..   ..+|...|...-..|+++.|-+.++++++.
T Consensus       331 ~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          331 VYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS---AVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            455554444444444 46666667788999998 9999999999973   457999999999999999999999999986


Q ss_pred             C
Q 022783          282 G  282 (292)
Q Consensus       282 G  282 (292)
                      .
T Consensus       408 l  408 (679)
T 4e6h_A          408 I  408 (679)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=85.68  E-value=3.5  Score=38.64  Aligned_cols=57  Identities=12%  Similarity=0.082  Sum_probs=49.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI  279 (292)
                      ..+..+...|+|++|+....+++..+|-. +  .+|.-+-.+|...|+..+|+..|++.-
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~-E--~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYR-E--PLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC-H--HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55666788999999999999999999974 2  268899999999999999999998873

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.70  E-value=1.6  Score=33.21  Aligned_cols=31  Identities=13%  Similarity=0.176  Sum_probs=25.9

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          213 ERREQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       213 ~~~~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      .++-+.+.+|+..-+.|+|++|+.+|.+||+
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3345667889999999999999999999885

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=84.00  E-value=2.7  Score=41.49  Aligned_cols=60  Identities=8%  Similarity=-0.038  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +.+|........++.|..+|.+|+.++|+.   +..|+.+|..+...|+.-+|+-+|.+|+-.
T Consensus       156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~---G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          156 VHLGDIARYRNQTSQAESYYRHAAQLVPSN---GQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---SHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHhCCCC---CchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            588999988889999999999999999974   677999999999999999999999999754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.60  E-value=1.3  Score=42.07  Aligned_cols=63  Identities=13%  Similarity=-0.026  Sum_probs=52.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      ..+|.-+++.|+|++|+++|.++.+........-.++.++..++...++|..+...+++|-.+
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            488999999999999999999999765554455567888888888899999999999999544

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=82.77  E-value=1.6  Score=32.97  Aligned_cols=30  Identities=13%  Similarity=0.097  Sum_probs=25.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          214 RREQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       214 ~~~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      ++-+.+.+|+..-+.|+|++|+.+|.+||+
T Consensus        10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           10 MARKYAILAVKADKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344567889999999999999999999885

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=81.98  E-value=10  Score=33.76  Aligned_cols=67  Identities=13%  Similarity=0.132  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH--c--CCCCc-----------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVL--G--SKPTP-----------EESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekAL--e--ldP~~-----------~d~a~a~YN~AccyakLgq~eeALe~LekAIe  280 (292)
                      -+-+-+.+.+.+.++|..|+.+.++.|  .  -+|+.           .|.-.-+.-.|..+...|+.++||.++.....
T Consensus        63 Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A           63 TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence            445678899999999999999999999  2  33442           23334466678999999999999999988766


Q ss_pred             hC
Q 022783          281 AG  282 (292)
Q Consensus       281 lG  282 (292)
                      .-
T Consensus       143 ~~  144 (242)
T 3kae_A          143 KS  144 (242)
T ss_dssp             HC
T ss_pred             Cc
Confidence            53

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=81.93  E-value=2  Score=37.03  Aligned_cols=64  Identities=16%  Similarity=0.047  Sum_probs=54.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      +-+.- .+.+|.++|-+.|+.++.+...+   +.+|.-.|-.-..+|+...|...|.+||..|..+-+
T Consensus        66 rYA~~-~ei~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           66 RFAEL-KAIQEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHHH-HHHHCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHHH-HHhcCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            55533 56699999999999999886654   788999999999999999999999999999987544

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=81.50  E-value=3.4  Score=32.86  Aligned_cols=50  Identities=26%  Similarity=0.355  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHH-HHHHHHHHhc
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS-YNVACCYSKL  265 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~-YN~AccyakL  265 (292)
                      ....+.+|-.+|+.++|.+|+..|+++..+-.+. +...++ +.+.-|-.++
T Consensus        53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~-~i~ki~~fyl~ec~kkl  103 (106)
T 2vkj_A           53 ARSLIAEGKDLFETANYGEALVFFEKALNLSDNE-EIKKIASFYLEECRKKL  103 (106)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHccccCH-HHHHHHHHHHHHHHHHh
Confidence            3556789999999999999999999999544332 332333 6777775543

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=81.14  E-value=2.5  Score=31.76  Aligned_cols=33  Identities=18%  Similarity=0.441  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE  250 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d  250 (292)
                      .+.+|..|...|++++|+.+|-+||...|++.+
T Consensus        20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            358899999999999999999999999998643

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=80.67  E-value=11  Score=41.25  Aligned_cols=97  Identities=12%  Similarity=0.050  Sum_probs=66.1

Q ss_pred             HHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--cCCCCccchhHHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACC  261 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekAL--eldP~~~d~a~a~YN~Acc  261 (292)
                      +..+-..|.+..++.-+++-.-...+-..++...+--+-..|.+.|+.++|++.|++..  .+.|+    ...|.-+=.|
T Consensus       134 IdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD----vvTYntLI~g  209 (1134)
T 3spa_A          134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD----LLSYAAALQC  209 (1134)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHH
Confidence            44555667777666555442211122223333333355667789999999999999998  57787    3445556668


Q ss_pred             HHhcCCH-HHHHHHHHHHHHhCcc
Q 022783          262 YSKLNQV-KAGLSALEDALLAGYE  284 (292)
Q Consensus       262 yakLgq~-eeALe~LekAIelG~~  284 (292)
                      +.+.|+. ++|.+.+++-.+.|+.
T Consensus       210 lcK~G~~~e~A~~Ll~EM~~kG~~  233 (1134)
T 3spa_A          210 MGRQDQDAGTIERCLEQMSQEGLK  233 (1134)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHTCC
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCC
Confidence            8888985 7899999999999975

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=80.58  E-value=2.3  Score=32.43  Aligned_cols=29  Identities=14%  Similarity=0.226  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      +.+.+..|+.+-+.|+|++|+.+|.+|++
T Consensus        16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie   44 (86)
T 4a5x_A           16 AATVLKRAVELDSESRYPQALVCYQEGID   44 (86)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34556888999999999999999999885

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=80.21  E-value=5.5  Score=38.58  Aligned_cols=61  Identities=7%  Similarity=-0.010  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--cCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekAL--eldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..-..+.+.|++++|++.|++..  .+.|+    ...|.-+=.+|++.|++++|++.+++-.+.|..
T Consensus       110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~  172 (501)
T 4g26_A          110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV  172 (501)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            44556788999999999999987  46676    345666677899999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-06
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	8e-06
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	4e-05
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	6e-05
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	6e-05
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	2e-04
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	2e-04
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-04
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	4e-04
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	4e-04
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	5e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-04
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	8e-04
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	8e-04
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	0.001
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	0.001
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	0.002
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	0.002
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	0.002
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	0.002
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	0.003
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	0.003
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	0.004

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 73  AESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVG 127
             SGS  Q+  ++ + V++E   + +G     GR+     Y+  +A  G A + G  +VG
Sbjct: 1   GSSGSSGQD--FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVG 58

Query: 128 DKVL 131
           D+++
Sbjct: 59  DQII 62

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 87  YEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVL 131
           Y VE++    P G+  +   +      I ++  GG A++TG   +GD++L
Sbjct: 5   YTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRIL 54

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 78  EEQEEKYEEYEVEIEQPYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            +++  +    V  E   GLK   G +       YI  + PGG   K G  + GD++++
Sbjct: 3   LDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 61

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 75  SGSEEQEEKYEEYEVEI---EQPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDK 129
           SGS      Y+E +V +   E  +G +   G + G    I A+   GSAD+ G    GD+
Sbjct: 3   SGSSG----YKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDE 58

Query: 130 VLA 132
           ++ 
Sbjct: 59  LVY 61

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 89  VEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           V+ +    +P G+           +  I  GG   + G   VGD++  
Sbjct: 5   VQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIRE 52

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 60  AKASETEAQASPEAESGSEEQEEKYEEYEVEIEQ-PYGLKFA-KGRDGGTYIDAIAPGGS 117
           +  S        +            +  + ++     GL            I  +   G+
Sbjct: 2   SSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGA 61

Query: 118 ADKTGMFQVGDKVLA 132
           A   G+ Q GD +++
Sbjct: 62  AASDGILQPGDVLIS 76

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 73  AESGSEEQEEK---YEEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQV 126
             SG E ++++    E   V+++   +P G+    G  GG Y+  +  G  A + G+ + 
Sbjct: 4   GSSGGERRKDRPYVEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGL-EY 62

Query: 127 GDKVLAT 133
           GD++L  
Sbjct: 63  GDQLLEF 69

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 77  SEEQEEKYEEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVL 131
            +  + K       ++     +G     G +      + ++ P G A + G  + GD ++
Sbjct: 11  RDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIV 70

Query: 132 A 132
            
Sbjct: 71  Y 71

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE---QPYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +   + +E      G     G          Y+  +   G+A + G  + GD+++A
Sbjct: 2   QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIA 57

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 6/61 (9%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278
           +    + Y+ G +E A      +   +P   +++     ++  + +  ++         A
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEP---DNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

Query: 279 L 279
           +
Sbjct: 60  I 60

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEI---EQPYGLKFAKGRD----GGTYIDAIAPGGSADKT 121
           +S +     + +E + EE ++     +   GL      D     G YI  I P   A K 
Sbjct: 5   SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD 64

Query: 122 GMFQVGDKVLA 132
           G  + GD+++ 
Sbjct: 65  GRIREGDRIIQ 75

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 80  QEEKYEEYEVEIEQPYGLKFAKGRDG-----GTYIDAIAPGGSADKTGMFQVGDKVLAT 133
           +E +     ++ +   GL     +       G Y+ ++  GG+AD  G    GD++L+ 
Sbjct: 1   KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 59

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 15/62 (24%)

Query: 85  EEYEVEIE----QPYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDK 129
           +   VE+     +  G+    GR             G +I  +     A K G  + GD+
Sbjct: 1   QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 60

Query: 130 VL 131
           ++
Sbjct: 61  IV 62

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275
            Q   EGL+  + G    A   FE+ +   P   +   A   +    ++  Q    +SAL
Sbjct: 20  PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP---KHMEAWQYLGTTQAENEQELLAISAL 76

Query: 276 EDAL 279
              L
Sbjct: 77  RRCL 80

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 88  EVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133
           EV +    +  G   A G        D   YI  I  GG+A K G  Q+GD++LA 
Sbjct: 4   EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 59

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 75  SGSEEQEEKYEEYEVEI----EQPYGLKFAKGRD------GGTYIDAIAPGGSADKTGMF 124
           S    Q    E  EV +       +G++                I  I     A++ G+ 
Sbjct: 5   SSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64

Query: 125 QVGDKVLA 132
           Q+GD+V+A
Sbjct: 65  QIGDRVMA 72

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 85  EEYEVEIE---QPYGLKFAKGRDG--------GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E + VE+E      G+       G        G ++  +  GG+A + G  QV D+++ 
Sbjct: 2   ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 60

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 88  EVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +V IE    +  G+   +   G       I  +  GG A+K+G   +GD++++
Sbjct: 1   DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMS 53

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 67  AQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRD---GGTYIDAIAPGGSADKTGM 123
           ++ +    S  +   +      ++ E    L    G D   G   + A+  GG+A++ G 
Sbjct: 2   SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGG 61

Query: 124 FQVGDKV 130
              GD++
Sbjct: 62  VVKGDEI 68

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 85  EEYEVEI----EQPYGLKFA------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E  EV +       +GL+        +       +  I P   A++ G+ QVGD+VL+
Sbjct: 8   ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLS 65

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 92  EQPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               G+    G +       I  I  GGSA   G  +VG  +L 
Sbjct: 16  AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILE 59

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 71  PEAESGSEEQEEKYEEYEVEI-------EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGM 123
           P  +    E    Y    V+I       + P G    +       I  I  GG+A+K+G+
Sbjct: 1   PITDERVYESIGHYGGETVKIVRIEKARDIPLGATV-RNEMDSVIISRIVKGGAAEKSGL 59

Query: 124 FQVGDKVLA 132
              GD+VL 
Sbjct: 60  LHEGDEVLE 68

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + V++        G+  +            I  I  G  A +TG  ++GDK+LA
Sbjct: 10  GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLA 65

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 85  EEYEVEIE---QPYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVL 131
           E  E+ +E      G   A G D          +I  I PGG+A + G  +V D +L
Sbjct: 1   EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 92  EQPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLA 132
              YG      +   G YI  + PG  A+K G+   GD+++ 
Sbjct: 13  PNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGL-LAGDRLVE 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.24
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.22
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.18
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.13
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.11
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.09
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.09
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.04
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.02
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.97
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.94
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.92
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.91
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.91
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.84
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.84
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.82
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	98.82
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.81
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.8
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.76
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.76
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	98.73
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	98.72
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	98.71
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.68
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	98.67
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.66
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.66
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	98.63
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	98.61
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.61
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.6
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.6
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.59
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.58
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.58
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.54
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.53
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.53
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.52
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	98.52
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	98.51
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.49
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	98.49
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	98.44
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.44
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.42
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.41
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.4
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.39
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	98.34
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	98.31
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.3
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.29
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.29
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	98.28
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.27
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.26
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.25
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.25
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.23
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.18
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	98.18
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.17
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.17
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.17
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.16
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	98.15
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.14
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.14
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.09
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.03
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.0
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.99
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.99
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	97.98
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.97
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	97.96
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	97.93
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	97.91
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.9
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	97.86
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.84
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.83
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.83
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.8
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.78
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.77
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.73
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.72
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	97.52
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.46
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.41
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	97.28
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.27
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	97.19
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.14
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.1
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	96.98
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	96.91
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	96.76
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.7
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	96.32
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.19
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.86
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.72
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	94.42
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	94.15
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.76
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	83.31
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	82.42

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=7.4e-12  Score=101.09  Aligned_cols=93  Identities=11%  Similarity=0.033  Sum_probs=72.7

Q ss_pred             HHHhhccccchhhHHHHHHHhhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      -..++..|++..++     ..|.++-.+.+.... +.++|..|.+.|+|++|+..|++||+++|++   ..+|+|+|.||
T Consensus        11 Gn~~~~~g~~~~Ai-----~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~---~~a~~~lg~~~   82 (201)
T d2c2la1          11 GNRLFVGRKYPEAA-----ACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQ   82 (201)
T ss_dssp             HHHHHHTTCHHHHH-----HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHH-----HHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc---HHHHHHHHHHH
Confidence            34455555544432     245555555555444 4599999999999999999999999999974   45799999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCcc
Q 022783          263 SKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~~  284 (292)
                      ..+|++++|+.++++|+++..+
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999988643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=1.4e-11  Score=99.42  Aligned_cols=68  Identities=24%  Similarity=0.295  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      .+..++|+.+++.|+|++|+..|++||+++|++   +.+|+|+|.||.++|++++|+.+|++||++...+.
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~---~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~   72 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH
Confidence            456699999999999999999999999999974   56899999999999999999999999999987654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.8e-11  Score=94.84  Aligned_cols=95  Identities=16%  Similarity=0.112  Sum_probs=74.2

Q ss_pred             HHHhhccccchhhHHHHHHHhhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy  262 (292)
                      -..+++.|.+.+++     ..|.+.....+.... +.++|..+.+.|+|++|+..|+++|+++|++   ..+|+|+|.||
T Consensus        10 g~~~~~~g~~~eAi-----~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~   81 (117)
T d1elwa_          10 GNKALSVGNIDDAL-----QCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---GKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHTTCHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHH-----HHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch---hhHHHHHHHHH
Confidence            33445555544433     255555444454444 4599999999999999999999999999974   46799999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCccCh
Q 022783          263 SKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       263 akLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+|++++|+.++++|+++.+++.
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999987754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.8e-11  Score=101.48  Aligned_cols=92  Identities=14%  Similarity=0.174  Sum_probs=73.9

Q ss_pred             HhhccccchhhHHHHHHH--hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          186 AERNSGVISNRVREIQMQ--NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      .++|.|+.....++++.+  .|.  ++..+...-++++|..++++|+|++|++.|++||+++|++   ..+|+|+|.||.
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~--~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---~~a~~~~g~~~~   81 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFS--AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH--TSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh---hhhHHHHHHHHH
Confidence            345666666665556555  332  2333444556799999999999999999999999999974   678999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhC
Q 022783          264 KLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG  282 (292)
                      ++|++++|+++|++||+..
T Consensus        82 ~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTT
T ss_pred             hhccHHHHHHHHHHHHHhC
Confidence            9999999999999999863

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=5.3e-11  Score=99.09  Aligned_cols=108  Identities=19%  Similarity=0.160  Sum_probs=89.7

Q ss_pred             cccHHHHHHHhhccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhH
Q 022783          177 ELSEKEIIRAERNSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV  253 (292)
Q Consensus       177 ~~~e~~~~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~  253 (292)
                      ++++.+.-.++++.|.+...+++.+++  .|.+...+.+.... +.++|..+.+.|+|++|++.|+++|+++|++   ..
T Consensus        30 ~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~  106 (259)
T d1xnfa_          30 ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NY  106 (259)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TH
T ss_pred             hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh---hh
Confidence            345666667888999999888888886  66666666555444 4599999999999999999999999999974   45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          254 ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       254 a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      +|+|+|.||..+|++++|++.+++|+++...+..
T Consensus       107 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  140 (259)
T d1xnfa_         107 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF  140 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH
Confidence            7999999999999999999999999999876543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.4e-11  Score=94.64  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ....++|+.++..|+|++|+.+|+++|+++|++   ..+|+|+|.||..+|++++|+.+|++||++...
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~   70 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc
Confidence            344589999999999999999999999999974   468999999999999999999999999998654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.1e-11  Score=89.27  Aligned_cols=73  Identities=12%  Similarity=0.060  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc----cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~----~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .+++|+.|..+++.|+|++|+.+|++||++.|..    .+...+|+|+|.||.++|++++|++++++||++.+++-.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~   81 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence            4678999999999999999999999999876543    233678999999999999999999999999999877543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.2e-11  Score=90.74  Aligned_cols=70  Identities=13%  Similarity=0.058  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~  288 (292)
                      .+..+.|+.+++.|+|++|+.+|+++|+++|++   ..+|+|+|.||.++|++++|+.+|++||++..++...
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~   73 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG   73 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---hhhhhcccccccccccccccchhhhhHHHhccchhhH
Confidence            345689999999999999999999999999974   5689999999999999999999999999998876543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=3.9e-10  Score=91.44  Aligned_cols=100  Identities=16%  Similarity=0.109  Sum_probs=75.0

Q ss_pred             HHHhhccccchhhHHHHHHH-hhHH----------HHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch
Q 022783          184 IRAERNSGVISNRVREIQMQ-NYMK----------KKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea-~Y~k----------kk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~  251 (292)
                      -...++.|.+..++...+++ .+..          .....+.. .-+.++|..+.++|+|++||..|++||+++|++   
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---  110 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---  110 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh---
Confidence            34456666666666655543 1111          11111222 223589999999999999999999999999974   


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          252 SVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       252 a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ..+|+++|.||..+|++++|+.++++|+++..++-
T Consensus       111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1         111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            56899999999999999999999999999987653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-10  Score=92.76  Aligned_cols=98  Identities=14%  Similarity=0.058  Sum_probs=76.6

Q ss_pred             hhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          187 ERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      ++..|+..-..+.++++  .|.+...+.+.. .-++++|..+++.|+|++|+..|+++|+++|++   ..+|+++|.||.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~---~~a~~~~g~~~~   89 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc---hHHHHHHHHHHH
Confidence            33445544444444444  565665555554 334699999999999999999999999999974   467999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCccChh
Q 022783          264 KLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .+|++++|+.++++|+++...+..
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~  113 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKD  113 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHH
Confidence            999999999999999999877654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.8e-10  Score=92.31  Aligned_cols=71  Identities=14%  Similarity=0.136  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~  288 (292)
                      +.....+|+.+++.|+|++|+.+|+++|+++|++   ..+|+|+|.||..+|++++|+.+|++||++...+...
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a   80 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG   80 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh---hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHH
Confidence            3456689999999999999999999999999974   5689999999999999999999999999998876543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.09  E-value=5.2e-10  Score=90.19  Aligned_cols=99  Identities=11%  Similarity=0.097  Sum_probs=74.9

Q ss_pred             HHhhccccchhhHHHHHHH-hhHHH---------HH-hhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchh
Q 022783          185 RAERNSGVISNRVREIQMQ-NYMKK---------KE-QKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESS  252 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea-~Y~kk---------k~-lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a  252 (292)
                      ..+|..|++..++...+++ .+...         .. ..... .-..|+|..++++|+|++|++.|++||+++|++   .
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~---~  101 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---V  101 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---H
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh---h
Confidence            3556677777777666653 11110         00 00001 123489999999999999999999999999974   5


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          253 VASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       253 ~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      .+||++|+||..+|++++|+.+|++|+++.+++-
T Consensus       102 ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1         102 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            6899999999999999999999999999988754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=8.8e-10  Score=90.30  Aligned_cols=66  Identities=9%  Similarity=0.011  Sum_probs=60.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .++|..+++.|+|++|+..+++||.++|++   ..+|+++|.||..+|++++|+.+|++|+++.+.+..
T Consensus        66 ~nla~~y~k~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~  131 (170)
T d1p5qa1          66 LNLAMCHLKLQAFSAAIESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  131 (170)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHhhhhcccccchhhhhhhccccc---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            489999999999999999999999999974   568999999999999999999999999999876543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=3.6e-10  Score=93.90  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      .-.+++|..+++.|+|++|++.|++||+++|++   ..+|+|+|.||..+|++++|++++++|+++..++.
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  105 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  105 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh
Confidence            445699999999999999999999999999974   56799999999999999999999999999987644

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.97  E-value=3.8e-09  Score=85.87  Aligned_cols=64  Identities=16%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      .|+|..++++|+|++||..|+++|.++|++   ..+||++|-||..+|++++|+.+|++|+++.+++
T Consensus        68 ~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~---~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1          68 LNLAMCYLKLREYTKAVECCDKALGLDSAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HhHHHHHHHhhhcccchhhhhhhhhcccch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            389999999999999999999999999974   5689999999999999999999999999998765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.94  E-value=4.5e-10  Score=86.29  Aligned_cols=87  Identities=14%  Similarity=0.060  Sum_probs=66.9

Q ss_pred             HHhhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      ..+++.|.+..++.     .|.+.-...+.. .-++.+|..+.+.+++++|+..|+++|+++|++   ..+|+++|.||.
T Consensus        24 ~~~~~~g~~~~A~~-----~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~la~~y~   95 (112)
T d1hxia_          24 LSMLKLANLAEAAL-----AFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHT   95 (112)
T ss_dssp             HHHHHTTCHHHHHH-----HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHH-----HHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc---ccchHHHHHHHH
Confidence            44555666555433     444444444443 334599999999999999999999999999974   467999999999


Q ss_pred             hcCCHHHHHHHHHHHH
Q 022783          264 KLNQVKAGLSALEDAL  279 (292)
Q Consensus       264 kLgq~eeALe~LekAI  279 (292)
                      .+|++++|++++++.|
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.5e-09  Score=90.72  Aligned_cols=100  Identities=19%  Similarity=0.243  Sum_probs=82.9

Q ss_pred             HHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc-----------
Q 022783          185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-----------  250 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d-----------  250 (292)
                      ++.+|.|.+...++.++++  .|.++..+.+.. ..++++|..++++|+|++|++.|++||...|.+..           
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~  116 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK  116 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcc
Confidence            3578999999999999997  666666665554 44569999999999999999999999987665321           


Q ss_pred             --hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          251 --SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       251 --~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                        ...++||+|.||..+|++++|++.+++|+++-.+
T Consensus       117 ~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         117 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence              1357999999999999999999999999988655

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.3e-09  Score=86.24  Aligned_cols=84  Identities=13%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             HhhHHHHHhhHhH-HHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783          203 QNYMKKKEQKERR-EQDLREGLQLYRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (292)
Q Consensus       203 a~Y~kkk~lk~~~-~~~~n~G~~L~k~---gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA  278 (292)
                      ..|.+...+.+.. .-.||.|..|.+.   +++++||..|+++|..+|++ ....+|||+|.||..+|++++|+.++++|
T Consensus        20 ~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~-~~~~~~~~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          20 KKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc-hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4777776666655 5568999999864   56678999999999999864 23458999999999999999999999999


Q ss_pred             HHhCccChh
Q 022783          279 LLAGYEDFK  287 (292)
Q Consensus       279 IelG~~Df~  287 (292)
                      |++.+++.+
T Consensus        99 L~~~P~~~~  107 (122)
T d1nzna_          99 LQTEPQNNQ  107 (122)
T ss_dssp             HHHCTTCHH
T ss_pred             HHhCcCCHH
Confidence            999987654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.91  E-value=4.3e-09  Score=84.69  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc-------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-------------SSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d-------------~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      .+..++|+.+|+.|+|++|+..|++||.+-|...+             ...+|+|+|.||.++|++++|+++|++||++.
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            45568999999999999999999999987665311             13578999999999999999999999999998


Q ss_pred             ccChh
Q 022783          283 YEDFK  287 (292)
Q Consensus       283 ~~Df~  287 (292)
                      ..+.+
T Consensus        98 p~~~k  102 (153)
T d2fbna1          98 KNNVK  102 (153)
T ss_dssp             TTCHH
T ss_pred             chhhh
Confidence            87654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.87  E-value=4.1e-09  Score=80.75  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ..++.|..+++.|+|++|+..|++++.++|++   ..+|+++|.||..+|++++|+.++++||++..++..
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   85 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA   85 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc---chhhhhhhhhhhhhhhHHHhhccccccccccccccc
Confidence            45799999999999999999999999999974   568999999999999999999999999999877543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2e-09  Score=92.18  Aligned_cols=93  Identities=16%  Similarity=0.130  Sum_probs=70.8

Q ss_pred             ccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783          189 NSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (292)
Q Consensus       189 N~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL  265 (292)
                      +.|.+...+++.+++  .|.+.....+.. .-++++|..+.+.|+|++|++.|+++|+++|++   ..+|+|+|.||.++
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~  253 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---IRSRYNLGISCINL  253 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc---HHHHHHHHHHHHHC
Confidence            344444444444443  333333333333 345699999999999999999999999999974   56799999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcc
Q 022783          266 NQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       266 gq~eeALe~LekAIelG~~  284 (292)
                      |++++|++.+++||++-.+
T Consensus       254 g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         254 GAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             TCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCc
Confidence            9999999999999998544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.3e-09  Score=84.64  Aligned_cols=72  Identities=19%  Similarity=0.247  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d------------~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ...++|+.+|+.|+|++|+..|++||.+.|....            ...+|+|+|.||.++|++++|+.+|++||++.+.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~   94 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN   94 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence            3458999999999999999999999987775311            1457899999999999999999999999999887


Q ss_pred             Chhh
Q 022783          285 DFKV  288 (292)
Q Consensus       285 Df~~  288 (292)
                      +...
T Consensus        95 ~~~a   98 (170)
T d1p5qa1          95 NEKG   98 (170)
T ss_dssp             CHHH
T ss_pred             chhh
Confidence            6543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.84  E-value=3.4e-09  Score=84.99  Aligned_cols=66  Identities=15%  Similarity=0.168  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc---------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d---------~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +..+..|..++..|+|++||..|++||+++|+..+         .+.+|+|+|.||.++|++++|+.++++||++
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            44567799999999999999999999998887533         2568999999999999999999999999986

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.9e-09  Score=84.35  Aligned_cols=95  Identities=17%  Similarity=0.205  Sum_probs=71.9

Q ss_pred             ccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch----hHHHHHHHHH
Q 022783          189 NSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVACC  261 (292)
Q Consensus       189 N~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~----a~a~YN~Acc  261 (292)
                      |.|+..-..+++.++  .|.+...+.+.. ....++|..+++.|+|++|+..|++||+++|+....    +.+|+++|.+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            444444333434443  555555555554 334599999999999999999999999999875332    4578999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCc
Q 022783          262 YSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       262 yakLgq~eeALe~LekAIelG~  283 (292)
                      +..++++++|++++++|+....
T Consensus        89 ~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCC
Confidence            9999999999999999998753

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=4.2e-09  Score=82.01  Aligned_cols=84  Identities=21%  Similarity=0.330  Sum_probs=68.8

Q ss_pred             cccceEEEEecC---CceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           82 EKYEEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        82 ~~~~~~~v~l~K---PlGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      ++.+...|+|.|   ||||.|..+.+ .++||..|.|+|-|+++|.|++||+|+.+..    .-.....+.+++..|+..
T Consensus         6 ~~~~~r~V~l~k~~~glG~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg----~~v~~~~~~ev~~~l~~~   81 (102)
T d1tp5a1           6 IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNG----VDLRNASHEQAAIALKNA   81 (102)
T ss_dssp             CCCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETT----EECTTCCHHHHHHHHHTS
T ss_pred             CCCCCEEEEEEeCCCcccEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEECC----eEcCCCCHHHHHHHHHcC
Confidence            444557888876   79999987754 4999999999999999999999999999763    334445677899999988


Q ss_pred             CCceEEEEeecc
Q 022783          158 VGPLLMKMQKRY  169 (292)
Q Consensus       158 ~g~v~l~l~r~~  169 (292)
                      .+++.|+++|..
T Consensus        82 ~~~v~L~v~~~~   93 (102)
T d1tp5a1          82 GQTVTIIAQYKP   93 (102)
T ss_dssp             CSEEEEEEEECH
T ss_pred             CCeEEEEEEECC
Confidence            889999998843

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4e-09  Score=89.14  Aligned_cols=68  Identities=15%  Similarity=0.074  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      ......|..+.+.|+|++|++.|+++|+++|++   ..+|+|+|.+|..+|++++|++++++||++.+++.
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            344689999999999999999999999999974   56799999999999999999999999999976653

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=6.5e-09  Score=79.63  Aligned_cols=81  Identities=28%  Similarity=0.484  Sum_probs=64.9

Q ss_pred             ceEEEEecC---CceeEEeee----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHH
Q 022783           85 EEYEVEIEQ---PYGLKFAKG----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~----------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~  151 (292)
                      +.|+|+|.|   +||+.+...          .++++||..|.|+|.|+++|.|++||+|+.+..    .-..-..+-+++
T Consensus         4 ~~~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~s~~~a~   79 (99)
T d1ozia_           4 DTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG----VSLEGATHKQAV   79 (99)
T ss_dssp             CEEEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETT----EECSSCCHHHHH
T ss_pred             CEEEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECC----EEcCCCCHHHHH
Confidence            678999976   689988643          235799999999999999999999999999863    222223556888


Q ss_pred             HHhhccCCceEEEEeecc
Q 022783          152 YTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       152 ~ai~~r~g~v~l~l~r~~  169 (292)
                      .+|+.-...|.|++.|..
T Consensus        80 ~~lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          80 ETLRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHHHHSCSEEEEEEECCC
T ss_pred             HHHHCCCCeEEEEEEeCC
Confidence            999987788999999964

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.81  E-value=9.9e-09  Score=83.37  Aligned_cols=73  Identities=21%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc------------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~------------d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      ....++|+.+++.|+|++|+..|++||.+-|...            ....+|.|+|.||.++|++++|+.+|++||++..
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            3445899999999999999999999996444321            1246799999999999999999999999999987


Q ss_pred             cChhh
Q 022783          284 EDFKV  288 (292)
Q Consensus       284 ~Df~~  288 (292)
                      .+.+.
T Consensus        96 ~~~~a  100 (168)
T d1kt1a1          96 ANEKG  100 (168)
T ss_dssp             TCHHH
T ss_pred             chHHH
Confidence            76543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.7e-09  Score=96.37  Aligned_cols=101  Identities=8%  Similarity=-0.007  Sum_probs=75.7

Q ss_pred             HHHhhccccchhhHHH-HHHH--hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHH
Q 022783          184 IRAERNSGVISNRVRE-IQMQ--NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~e-iqea--~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~A  259 (292)
                      +.+..|.|.+...++. .+++  .|.+..+..++..+. .++|..+.+.|+|++|++.|+++|+++|++   ..+|+|++
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n---~~a~~~~~  153 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---YHAWQHRQ  153 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc---hHHHHHHH
Confidence            4466677777666543 4443  555555555554444 488999888999999999999999998874   45799999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          260 CCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       260 ccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      .|+..+|++++|++++++||++...++.
T Consensus       154 ~~~~~~~~~~~Al~~~~~al~~~p~n~~  181 (315)
T d2h6fa1         154 WVIQEFKLWDNELQYVDQLLKEDVRNNS  181 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHCCccHH
Confidence            9999999999999999999998877653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.4e-08  Score=86.86  Aligned_cols=94  Identities=16%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             HHhhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783          185 RAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (292)
Q Consensus       185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya  263 (292)
                      ..++..|++..++.     .|.+..+..+.. ..++.+|..+.+.|+|++|+..|+++++++|++   ..+|+++|.+|.
T Consensus        27 ~~~~~~g~~~~A~~-----~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~   98 (323)
T d1fcha_          27 LRRLQEGDLPNAVL-----LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN---QTALMALAVSFT   98 (323)
T ss_dssp             HHHHHTTCHHHHHH-----HHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc---cccccccccccc
Confidence            34455555544433     333333434433 344688888888888888888888888888863   456888888888


Q ss_pred             hcCCHHHHHHHHHHHHHhCccCh
Q 022783          264 KLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       264 kLgq~eeALe~LekAIelG~~Df  286 (292)
                      .+|++++|++.+++++.+..++.
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             ccccccccccchhhHHHhccchH
Confidence            88888888888888888765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=7.4e-09  Score=83.17  Aligned_cols=93  Identities=14%  Similarity=0.099  Sum_probs=73.7

Q ss_pred             ccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCccchhHHH
Q 022783          189 NSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRT----------GKYEVAREKFESVLGSKPTPEESSVAS  255 (292)
Q Consensus       189 N~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~----------gdYeeAIe~fekALeldP~~~d~a~a~  255 (292)
                      +++....++..++++  .|.++.++.++..+ .++.|.+++..          +++++|++.|++||+++|++   ..+|
T Consensus         2 d~~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~---~~a~   78 (145)
T d1zu2a1           2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---DEAV   78 (145)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHH
T ss_pred             ChhHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh---hHHH
Confidence            345556677777775  66666666666544 45999999754          56689999999999999974   5689


Q ss_pred             HHHHHHHHhcCC-----------HHHHHHHHHHHHHhCcc
Q 022783          256 YNVACCYSKLNQ-----------VKAGLSALEDALLAGYE  284 (292)
Q Consensus       256 YN~AccyakLgq-----------~eeALe~LekAIelG~~  284 (292)
                      ||+|.+|..+|+           +++|++++++||++.+.
T Consensus        79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~  118 (145)
T d1zu2a1          79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  118 (145)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence            999999998764           69999999999999865

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8e-09  Score=78.05  Aligned_cols=76  Identities=17%  Similarity=0.301  Sum_probs=64.1

Q ss_pred             EEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEE
Q 022783           88 EVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM  163 (292)
Q Consensus        88 ~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l  163 (292)
                      .|+|.|    |||+.+..+.++++||..|.|||-|+++|.|++||.|+.+-    +.-..-..+.+++..|++-+++|.|
T Consensus         4 ~V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~IN----g~~v~~~~~~~~~~ll~~~~~~v~L   79 (88)
T d1kwaa_           4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREIN----GISVANQTVEQLQKMLREMRGSITF   79 (88)
T ss_dssp             EEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEET----TEEGGGSCHHHHHHHHHHCCEEEEE
T ss_pred             EEEEEeCCCCCccEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEEC----CEECCCCCHHHHHHHHHcCCCcEEE
Confidence            577777    99999998888899999999999999999999999999975    3334445666888999988888999


Q ss_pred             EEee
Q 022783          164 KMQK  167 (292)
Q Consensus       164 ~l~r  167 (292)
                      ++-.
T Consensus        80 ~i~p   83 (88)
T d1kwaa_          80 KIVP   83 (88)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8853

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.9e-08  Score=78.50  Aligned_cols=81  Identities=25%  Similarity=0.412  Sum_probs=67.5

Q ss_pred             ceEEEEecC---CceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~-----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +.|+|+|.|   +||+.+..+.+     .++||..|.|+|-|+++|.|++||+|+.+.    +.-+.-....+++..|+.
T Consensus         8 ~~~~V~l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~IN----g~~v~~~~~~ev~~llk~   83 (110)
T d1um1a_           8 YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN----GSSLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             CEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEES----SCBCSSCCHHHHHHHHHT
T ss_pred             CEEEEEEEECCCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEEC----CEECCCCCHHHHHHHHHc
Confidence            469999987   79999976533     379999999999999999999999999975    344445566789999998


Q ss_pred             cCCceEEEEeecc
Q 022783          157 RVGPLLMKMQKRY  169 (292)
Q Consensus       157 r~g~v~l~l~r~~  169 (292)
                      -.+.+.|++.|+.
T Consensus        84 ~~~~v~l~v~r~~   96 (110)
T d1um1a_          84 GGKKMRFLVAKSD   96 (110)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEeCC
Confidence            8899999998853

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=2e-08  Score=76.77  Aligned_cols=82  Identities=21%  Similarity=0.409  Sum_probs=67.7

Q ss_pred             ceEEEEecC---CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC
Q 022783           85 EEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g  159 (292)
                      .-|+|+|+|   +||+.|..+.  .+++||..|.|+|.|+++|.+++||+|+.+-    +.-..-..+.+++..|+.-.+
T Consensus         3 ~i~tV~l~k~~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~IN----g~~v~~~~~~ev~~~l~~~~~   78 (95)
T d1n7ea_           3 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN----SSSLKGKPLSEAIHLLQMAGE   78 (95)
T ss_dssp             CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEET----TEECTTCCHHHHHHHHHTCCS
T ss_pred             EEEEEEEEECCCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC----CEECCCCCHHHHHHHHHcCCC
Confidence            568999999   8999998653  4589999999999999999999999999975    333344456678889998888


Q ss_pred             ceEEEEeeccC
Q 022783          160 PLLMKMQKRYG  170 (292)
Q Consensus       160 ~v~l~l~r~~~  170 (292)
                      .+.|++.|+..
T Consensus        79 ~v~l~v~r~~~   89 (95)
T d1n7ea_          79 TVTLKIKKQTD   89 (95)
T ss_dssp             EEEEEEECCCC
T ss_pred             eEEEEEEECCC
Confidence            99999998644

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.3e-08  Score=75.80  Aligned_cols=79  Identities=27%  Similarity=0.444  Sum_probs=63.9

Q ss_pred             EEEEecC---CceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           87 YEVEIEQ---PYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        87 ~~v~l~K---PlGl~~~~~-------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      ++|+|.|   +||+.+.-+       .+.++||..|.|||-|+++|.+++||+|+.+..    .-+.-..+.+++..|+.
T Consensus         3 ~~V~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~~~~e~~~~lk~   78 (92)
T d2fe5a1           3 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN----TNLQDVRHEEAVASLKN   78 (92)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETT----EECTTCBHHHHHHHHHT
T ss_pred             EEEEEEECCCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCC----eecCCCCHHHHHHHHHc
Confidence            5677754   588888643       235899999999999999999999999999753    44444577789999998


Q ss_pred             cCCceEEEEeecc
Q 022783          157 RVGPLLMKMQKRY  169 (292)
Q Consensus       157 r~g~v~l~l~r~~  169 (292)
                      -.+.|.|++.|+-
T Consensus        79 ~~~~v~L~v~Rpg   91 (92)
T d2fe5a1          79 TSDMVYLKVAKPG   91 (92)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCEEEEEEECCC
Confidence            8888999999874

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.3e-08  Score=77.22  Aligned_cols=84  Identities=18%  Similarity=0.297  Sum_probs=68.2

Q ss_pred             ceEEEEecC---CceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~-----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      ..+.|+|+|   +||+.+.-+.     +.++||..|.|||-|+++|.|++||+|+.|..    .-+....+.+++.+|+.
T Consensus        29 ~~~~V~l~k~~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg----~~~~~~t~~eav~~l~~  104 (130)
T d1i16a_          29 TVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGG----TAMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             EEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSS----CBGGGSCHHHHHHHHHT
T ss_pred             eEEEEEEEeCCCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECC----eecCCCcHHHHHHHHHc
Confidence            457788887   4999997542     34899999999999999999999999999763    44555677788999986


Q ss_pred             -cCCceEEEEeeccCCc
Q 022783          157 -RVGPLLMKMQKRYGKM  172 (292)
Q Consensus       157 -r~g~v~l~l~r~~~~~  172 (292)
                       ..+.|.|++.|+...-
T Consensus       105 ~~~~~v~l~v~r~~~~~  121 (130)
T d1i16a_         105 LPDGPVTIVIRRKSLQS  121 (130)
T ss_dssp             SCSSEEEEEEEEESSCC
T ss_pred             CCCCeEEEEEEcCCCCC
Confidence             5678999999986654

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.7e-08  Score=76.90  Aligned_cols=80  Identities=19%  Similarity=0.363  Sum_probs=63.7

Q ss_pred             ceEEEEecC---CceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783           85 EEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~--------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a  153 (292)
                      +.|+|+|.|   +||+.+.-+        .+.++||..|.|+|-|+++|.+++||+|+.+..    .-..-....+++.+
T Consensus         2 e~~~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~~~~~~~~~   77 (94)
T d1wf8a1           2 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDG----ISLVGVTQNFAATV   77 (94)
T ss_dssp             EEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETT----EECBSCCHHHHHHH
T ss_pred             eEEEEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECC----EECCCCCHHHHHHH
Confidence            568888875   589988532        223799999999999999999999999999863    22223456688899


Q ss_pred             hhccCCceEEEEeec
Q 022783          154 IRQRVGPLLMKMQKR  168 (292)
Q Consensus       154 i~~r~g~v~l~l~r~  168 (292)
                      |+.-.+.+.|++.|.
T Consensus        78 l~~~~~~v~L~V~R~   92 (94)
T d1wf8a1          78 LRNTKGNVRFVIGRE   92 (94)
T ss_dssp             HHHCCSEEEEEEEEE
T ss_pred             HHcCCCeEEEEEEeC
Confidence            998889999999885

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=2.9e-08  Score=76.21  Aligned_cols=80  Identities=20%  Similarity=0.338  Sum_probs=64.4

Q ss_pred             ceEEEEecC----CceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      ..+.|+|.|    +|||.+..+.    +.++||..|.|||.|+++|.+++||+|+.+-.    .-..-..+-+++..|+.
T Consensus        10 ~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~s~~e~~~ll~~   85 (99)
T d1p1da2          10 GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDN----IRLDSCSMEDAVQILQQ   85 (99)
T ss_dssp             SCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETT----EEGGGCCHHHHHHHHHH
T ss_pred             CcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCC----EECCCCCHHHHHHHHHc
Confidence            348888876    5999997642    23799999999999999999999999999763    22233456689999998


Q ss_pred             cCCceEEEEeec
Q 022783          157 RVGPLLMKMQKR  168 (292)
Q Consensus       157 r~g~v~l~l~r~  168 (292)
                      ..+.|.|++.|.
T Consensus        86 ~~~~v~L~V~r~   97 (99)
T d1p1da2          86 CEDLVKLKIRKD   97 (99)
T ss_dssp             CTTCEEEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            888999999883

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=2.7e-08  Score=75.34  Aligned_cols=80  Identities=21%  Similarity=0.344  Sum_probs=63.3

Q ss_pred             eEEEEec---CCceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh
Q 022783           86 EYEVEIE---QPYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (292)
Q Consensus        86 ~~~v~l~---KPlGl~~~~~-------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~  155 (292)
                      ..+|+|.   ++||+.+..+       .+.++||..|.|||-|+++|.+++||+|+.+..    .-+.-..+-+++.+|+
T Consensus         2 ~~~V~l~k~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~s~~e~~~~l~   77 (93)
T d1rgra_           2 YEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE----VDVREVTHSAAVEALK   77 (93)
T ss_dssp             EEEEEEECCSSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETT----EECSSSCHHHHHHHHH
T ss_pred             CEEEEEEeCCCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECC----EECCCCCHHHHHHHHH
Confidence            3467776   4689999643       234899999999999999999999999999763    3333345678899999


Q ss_pred             ccCCceEEEEeecc
Q 022783          156 QRVGPLLMKMQKRY  169 (292)
Q Consensus       156 ~r~g~v~l~l~r~~  169 (292)
                      .-.+.|.|++.|.-
T Consensus        78 ~~~~~v~L~v~R~~   91 (93)
T d1rgra_          78 EAGSIVRLYVMRRK   91 (93)
T ss_dssp             HTTTEEEEEEECSC
T ss_pred             cCCCEEEEEEEeCC
Confidence            88889999999853

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=4.9e-08  Score=74.11  Aligned_cols=81  Identities=20%  Similarity=0.303  Sum_probs=65.5

Q ss_pred             ccceEEEEecC-----CceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           83 KYEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        83 ~~~~~~v~l~K-----PlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +.+..+|+|.|     .+|+.+..+. +.++||.+|.++|-|+++| |++||+|+.+-    ++-..-...-+++..|+.
T Consensus         4 p~e~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~~g~A~~~g-L~~GD~Il~VN----g~~v~~~t~~~~~~~l~~   78 (91)
T d1m5za_           4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVN----HVRTRDFDCCLVVPLIAE   78 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEET----TEECTTCCHHHHHHHHHT
T ss_pred             CCceEEEEEEECCCCCceeEEEeccCCCCCEEEEEECCCChhHhCc-CCCCCEEEEEC----CEECCCCCHHHHHHHHHC
Confidence            44667777776     5899998764 5599999999999999999 99999999965    333444455688899998


Q ss_pred             cCCceEEEEeec
Q 022783          157 RVGPLLMKMQKR  168 (292)
Q Consensus       157 r~g~v~l~l~r~  168 (292)
                      ..+.+.|++.|.
T Consensus        79 ~~~~v~L~v~R~   90 (91)
T d1m5za_          79 SGNKLDLVISRN   90 (91)
T ss_dssp             STTEEEEEEEEC
T ss_pred             CCCEEEEEEEEC
Confidence            889999999985

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.63  E-value=4.2e-08  Score=74.65  Aligned_cols=78  Identities=23%  Similarity=0.482  Sum_probs=60.0

Q ss_pred             EEEEecC----CceeEEeee----CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh---
Q 022783           87 YEVEIEQ----PYGLKFAKG----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR---  155 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~----~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~---  155 (292)
                      ++|+|.|    +||+.+.-+    .|+++||..|.|||-|+++|.+++||+|+++...    =..-..+.+++..|+   
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~----~l~~~s~~eav~llk~~~   78 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDI----NFENMSNDDAVRVLRDIV   78 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTE----ECTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCE----ECCCCCHHHHHHHHHhcc
Confidence            5677777    499999754    3469999999999999999999999999998642    111224456666665   


Q ss_pred             ccCCceEEEEeec
Q 022783          156 QRVGPLLMKMQKR  168 (292)
Q Consensus       156 ~r~g~v~l~l~r~  168 (292)
                      .++++|.|++.|.
T Consensus        79 ~~~~~v~L~V~R~   91 (92)
T d2f0aa1          79 HKPGPIVLTVAKL   91 (92)
T ss_dssp             HSSSCEEEEEECC
T ss_pred             CCCCcEEEEEEeC
Confidence            4688999999883

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=4.5e-08  Score=74.26  Aligned_cols=77  Identities=19%  Similarity=0.370  Sum_probs=62.4

Q ss_pred             EEEEecC----CceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHh
Q 022783           87 YEVEIEQ----PYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~--------G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai  154 (292)
                      +.|+|.|    +||+.+..+.+        .++||..|.|+|-|+++|.+++||+|+++..    .-+.-..+.+++..|
T Consensus         5 ~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg----~~v~~~~~~~~~~ll   80 (94)
T d1ihja_           5 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG----KDVRNSTEQAVIDLI   80 (94)
T ss_dssp             EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETT----EECTTCCHHHHHHHH
T ss_pred             EEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECC----EECCCCCHHHHHHHH
Confidence            5678876    69999975421        2699999999999999999999999999763    333444667899999


Q ss_pred             hccCCceEEEEee
Q 022783          155 RQRVGPLLMKMQK  167 (292)
Q Consensus       155 ~~r~g~v~l~l~r  167 (292)
                      ++..++|.|+++|
T Consensus        81 ~~~~~~v~L~V~R   93 (94)
T d1ihja_          81 KEADFKIELEIQT   93 (94)
T ss_dssp             HHSCSEEEEEEEE
T ss_pred             HcCCCEEEEEEEe
Confidence            9888999999987

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.2e-08  Score=79.29  Aligned_cols=85  Identities=20%  Similarity=0.409  Sum_probs=70.0

Q ss_pred             ccceEEEEecC---CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      .++.++|+|.|   +||+.+.-+.  +.++||..|.|+|.|+++|.|++||.|+.+..    .-..-..+-+++.+|+.-
T Consensus         9 ~~e~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg----~~v~~~s~~ev~~~l~~~   84 (103)
T d1wfva_           9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEING----ESTRDMTHARAIELIKSG   84 (103)
T ss_dssp             CSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETT----EECSSCCHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCCccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECC----EECCCCcHHHHHHHHHcC
Confidence            56789999986   7999998653  44899999999999999999999999999864    333345666889999988


Q ss_pred             CCceEEEEeeccCC
Q 022783          158 VGPLLMKMQKRYGK  171 (292)
Q Consensus       158 ~g~v~l~l~r~~~~  171 (292)
                      +..|.|++.|+.+.
T Consensus        85 ~~~v~l~v~R~~~s   98 (103)
T d1wfva_          85 GRRVRLLLKRGTGS   98 (103)
T ss_dssp             CSEECEEEECTTCS
T ss_pred             CCEEEEEEEECCCC
Confidence            88999999997653

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=9.4e-08  Score=75.55  Aligned_cols=82  Identities=21%  Similarity=0.407  Sum_probs=65.4

Q ss_pred             EEEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEE
Q 022783           87 YEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM  163 (292)
Q Consensus        87 ~~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l  163 (292)
                      -.|+|.|   ||||.+..+.++++||..|.|+|-|+++| |++||+|+++-..    -......-++...|+.-...|.|
T Consensus        21 r~v~l~k~~~glG~~i~gg~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~----~v~~~~~~~~~~~l~~~~~~v~l   95 (117)
T d1uita_          21 RHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGI----NLRSATEQQARLIIGQQCDTITI   95 (117)
T ss_dssp             EEEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEETTE----ETTTCCHHHHHHHTTSCCSEEEE
T ss_pred             EEEEEEeCCCccCEEEEccCCCCEEEEEEecCChHHhCC-CCCCCEeeeECCc----ccCCCCHHHHHHHHHCCCCeEEE
Confidence            5677776   89999998889999999999999999887 9999999998742    12223455788889877888999


Q ss_pred             EEeeccCCcc
Q 022783          164 KMQKRYGKME  173 (292)
Q Consensus       164 ~l~r~~~~~~  173 (292)
                      ++.|.....+
T Consensus        96 ~v~~~p~~~~  105 (117)
T d1uita_          96 LAQYNPHVHQ  105 (117)
T ss_dssp             EECCCSCCCC
T ss_pred             EEEECCccee
Confidence            9988655443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=6e-08  Score=81.70  Aligned_cols=92  Identities=14%  Similarity=0.100  Sum_probs=71.4

Q ss_pred             hhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783          187 ERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (292)
Q Consensus       187 ~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL  265 (292)
                      .+..|++..++.     .|.+..+..+.. .-.+.+|..+++.|+|++|+..|+++++++|+.   ..+|+++|.||..+
T Consensus         9 ~~~~G~~~~A~~-----~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~   80 (388)
T d1w3ba_           9 EYQAGDFEAAER-----HCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL---AEAYSNLGNVYKER   80 (388)
T ss_dssp             HHHHTCHHHHHH-----HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHhhhh
Confidence            344566554433     333333333333 345699999999999999999999999999974   56799999999999


Q ss_pred             CCHHHHHHHHHHHHHhCccCh
Q 022783          266 NQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       266 gq~eeALe~LekAIelG~~Df  286 (292)
                      |++++|+..+.++++....+.
T Consensus        81 g~~~~A~~~~~~~~~~~~~~~  101 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKPDFI  101 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccccccccccccccccccccc
Confidence            999999999999999876544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.59  E-value=8e-08  Score=76.75  Aligned_cols=65  Identities=11%  Similarity=-0.004  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc--------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP--------EESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~--------~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      +.+.|..|.++|+|++|++.|+++|.+.|..        .....+|+|+|.||..+|++++|++++++|+++-
T Consensus        58 ~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          58 HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3499999999999999999999999765431        1224579999999999999999999999999983

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.3e-08  Score=88.85  Aligned_cols=96  Identities=8%  Similarity=-0.013  Sum_probs=77.2

Q ss_pred             ccccchhhHHHHHH--HhhHHHHHhhHhHHHH-HHHHHHHHHcC-CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          189 NSGVISNRVREIQM--QNYMKKKEQKERREQD-LREGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       189 N~GvI~~~l~eiqe--a~Y~kkk~lk~~~~~~-~n~G~~L~k~g-dYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      +.|.+..+....++  ..|.++.++.+....+ .++|.++...| +|++|++.|+++|+++|++   ..+|+|+|.++..
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~---~~a~~~~~~~~~~  124 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---YQVWHHRRVLVEW  124 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh---hhHHHHHhHHHHh
Confidence            34444444433334  4677777777766665 59999999986 5999999999999999974   5689999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCccChh
Q 022783          265 LNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~~Df~  287 (292)
                      +|++++|++.+++||++..+++.
T Consensus       125 l~~~~eAl~~~~kal~~dp~n~~  147 (315)
T d2h6fa1         125 LRDPSQELEFIADILNQDAKNYH  147 (315)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTCHH
T ss_pred             hccHHHHHHHHhhhhhhhhcchH
Confidence            99999999999999999877654

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=7.9e-08  Score=77.45  Aligned_cols=85  Identities=14%  Similarity=0.164  Sum_probs=66.4

Q ss_pred             ceEEEEecC-C--ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CC
Q 022783           85 EEYEVEIEQ-P--YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG  159 (292)
Q Consensus        85 ~~~~v~l~K-P--lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g  159 (292)
                      +.++|+|.| +  ||+.+.++ +.++||..|.|+|.|+++|.|++||+|+++-.    .-.....+.+++..||..  ..
T Consensus        27 ~~~~v~l~~g~~GlG~~i~~~-~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing----~~v~~~~~~e~~~llr~~~~g~  101 (126)
T d1wifa_          27 KVIQTKLTVGNLGLGLVVIQN-GPYLQISHLINKGAAASDGILQPGDVLISVGH----ANVLGYTLREFLKLLQNITIGT  101 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEEE-TTEEEECCCCTTSSGGGCSSSCTTCBEEEESS----SCCTTCCHHHHHHHHTSCCSSC
T ss_pred             cEEEEEEeeCCCcEEEEEEec-CCcEEEEEECCCChHHHcCCCCCCCEEEEECC----EEeEeccHHHHHHHHhCCCCCC
Confidence            578899987 3  55666553 44799999999999999999999999999753    333445666888999964  36


Q ss_pred             ceEEEEeeccCCccc
Q 022783          160 PLLMKMQKRYGKMEQ  174 (292)
Q Consensus       160 ~v~l~l~r~~~~~~~  174 (292)
                      .|.|++.|.+.++..
T Consensus       102 ~v~L~v~R~~~~~p~  116 (126)
T d1wifa_         102 VLQIKAYRGFLEIPQ  116 (126)
T ss_dssp             EEEEEEESSSSCCCT
T ss_pred             EEEEEEEeCCCCCCC
Confidence            899999999877643

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=6.3e-08  Score=73.45  Aligned_cols=80  Identities=19%  Similarity=0.291  Sum_probs=63.5

Q ss_pred             ceEEEEecC----CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      +.-+|+|.|    |||+.+..+.  +.++||..|.|+|-|+++|.+++||.|+.+...    =..-...-+++..|+...
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~----~v~~~~~~~~~~~l~~~~   79 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE----DLSSATHDEAVQALKKTG   79 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTE----ECTTCCHHHHHHHHHTCC
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCE----ECCCCCHHHHHHHHHhCC
Confidence            345677776    6999998653  448999999999999999999999999998642    112235567889999888


Q ss_pred             CceEEEEeec
Q 022783          159 GPLLMKMQKR  168 (292)
Q Consensus       159 g~v~l~l~r~  168 (292)
                      +.|.|+++|.
T Consensus        80 ~~v~l~v~~~   89 (90)
T d1qava_          80 KEVVLEVKYM   89 (90)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEe
Confidence            9999999873

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.54  E-value=7e-08  Score=77.75  Aligned_cols=70  Identities=17%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-------------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP-------------EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~-------------~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..+.|+.+++.|+|++|++.|++||.+.+..             +....+|+|+|.||.++|++++||.+|++||++...
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            3478999999999999999999999654321             123567999999999999999999999999999876


Q ss_pred             Chh
Q 022783          285 DFK  287 (292)
Q Consensus       285 Df~  287 (292)
                      +..
T Consensus       110 ~~~  112 (169)
T d1ihga1         110 NTK  112 (169)
T ss_dssp             CHH
T ss_pred             hhh
Confidence            543

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.7e-07  Score=72.65  Aligned_cols=83  Identities=23%  Similarity=0.406  Sum_probs=65.4

Q ss_pred             ceEEEEecC---CceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783           85 EEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~--------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a  153 (292)
                      ....|+|.|   +||+.+.-+        .+.++||..|.|+|.|+++|.+++||+|+.+..    .-..-..+.+++.+
T Consensus         7 ~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg----~~v~~~~~~ev~~~   82 (105)
T d1whaa_           7 GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSING----VDVTEARHDHAVSL   82 (105)
T ss_dssp             EEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESS----CBCTTCCHHHHHHH
T ss_pred             CCEEEEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECC----EEcCCCcHHHHHHH
Confidence            346677755   699999743        244899999999999999999999999999753    22334456688999


Q ss_pred             hhccCCceEEEEeeccCC
Q 022783          154 IRQRVGPLLMKMQKRYGK  171 (292)
Q Consensus       154 i~~r~g~v~l~l~r~~~~  171 (292)
                      |+.-.+.|.|++.|+.+.
T Consensus        83 l~~~~~~v~l~v~R~~~~  100 (105)
T d1whaa_          83 LTAASPTIALLLEREAGS  100 (105)
T ss_dssp             HTSCCSCEEEEEEECCCC
T ss_pred             HHcCCCeEEEEEEECCCC
Confidence            998888999999997653

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.6e-07  Score=72.87  Aligned_cols=81  Identities=19%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             eEEEEecC----CceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           86 EYEVEIEQ----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        86 ~~~v~l~K----PlGl~~~~~~-~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      .++|+|.|    .||+.+..+. ++++||..|.+||-|+++|.+++||+|+.+..    .-..-..+-++...|+.-.+.
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg----~~v~~~s~~e~~~~l~~~~~~   77 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVND----RPLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETT----EECTTSCHHHHHHHHHHSCSS
T ss_pred             eEEEEEEECCCCcEeEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEECC----cCccCCCHHHHHHHHHcCCCC
Confidence            46777765    5889998764 45899999999999999999999999999853    222223556788899876666


Q ss_pred             eEEEEeeccC
Q 022783          161 LLMKMQKRYG  170 (292)
Q Consensus       161 v~l~l~r~~~  170 (292)
                      +.+.+.++.+
T Consensus        78 ~~~~l~~~~~   87 (112)
T d1qaua_          78 THVVLILRGP   87 (112)
T ss_dssp             SEEEEEEECC
T ss_pred             cEEEEEEeCC
Confidence            6666555443

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.3e-07  Score=70.64  Aligned_cols=76  Identities=21%  Similarity=0.382  Sum_probs=58.8

Q ss_pred             EEEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC-ce
Q 022783           87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PL  161 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g-~v  161 (292)
                      .+|+|.|    +||+.|+.. ++++||..|.+||-|+++| |++||+|+++-..    -.......++...|+..++ .+
T Consensus         4 r~v~l~k~~~~~lG~~l~~~-~~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~----~v~~~~~~~v~~~lk~~~~~~v   77 (85)
T d1w9ea1           4 REVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVG-LRFGDQVLQINGE----NCAGWSSDKAHKVLKQAFGEKI   77 (85)
T ss_dssp             EEEEEECCTTSCCSEEEEEE-TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTE----ECTTCCHHHHHHHHHHCCSSEE
T ss_pred             EEEEEEeCCCCCEeEEEEeC-CCCEEEEEECCCCHHHHcC-CCCccEEEEECCE----EeCCCCHHHHHHHHhcCCCCEE
Confidence            3566666    899999876 5689999999999999999 9999999997542    2223355678888986654 58


Q ss_pred             EEEEeec
Q 022783          162 LMKMQKR  168 (292)
Q Consensus       162 ~l~l~r~  168 (292)
                      .|+++++
T Consensus        78 ~l~v~~r   84 (85)
T d1w9ea1          78 TMTIRDR   84 (85)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            8888764

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.6e-07  Score=71.69  Aligned_cols=79  Identities=27%  Similarity=0.442  Sum_probs=62.8

Q ss_pred             cceEEEEecCC---ceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHH
Q 022783           84 YEEYEVEIEQP---YGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (292)
Q Consensus        84 ~~~~~v~l~KP---lGl~~~~~--------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~  152 (292)
                      .++++|+|.|-   +|+.+.-+        .+.++||..|.|||-|+++| +++||+|+.+..    .-...-.+.+++.
T Consensus         7 ~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg----~~v~~~~~~~~~~   81 (97)
T d1x5qa1           7 EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNG----VALQGAEHHEAVE   81 (97)
T ss_dssp             CEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETT----EECTTCCHHHHHH
T ss_pred             CeEEEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECC----EECCCCCHHHHHH
Confidence            36788998886   88998643        23389999999999999999 999999999763    2223344568889


Q ss_pred             HhhccCCceEEEEee
Q 022783          153 TIRQRVGPLLMKMQK  167 (292)
Q Consensus       153 ai~~r~g~v~l~l~r  167 (292)
                      +|+.....+.|++.|
T Consensus        82 ~l~~~~~~v~l~v~R   96 (97)
T d1x5qa1          82 ALRGAGTAVQMRVWR   96 (97)
T ss_dssp             HHHSCCSEEEEEEEE
T ss_pred             HHhCCCCEEEEEEEE
Confidence            999877888999987

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.4e-07  Score=71.86  Aligned_cols=78  Identities=21%  Similarity=0.346  Sum_probs=58.2

Q ss_pred             EEEEecC----CceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHH
Q 022783           87 YEVEIEQ----PYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~-----------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~  151 (292)
                      .+|+|.|    +||+.+.-+           ...++||..|.|+|-|+++|.+++||+|+++-.    .-..-....+++
T Consensus         3 r~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg----~~v~~~t~~ea~   78 (96)
T d2fcfa1           3 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDG----MDLRDASHEQAV   78 (96)
T ss_dssp             EEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETT----EECTTCCHHHHH
T ss_pred             EEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECC----EECCCCCHHHHH
Confidence            4566655    488887532           123899999999999999999999999999863    222334566888


Q ss_pred             HHhhccCCceEEEEeec
Q 022783          152 YTIRQRVGPLLMKMQKR  168 (292)
Q Consensus       152 ~ai~~r~g~v~l~l~r~  168 (292)
                      .+|+.-.+.|.|+++|-
T Consensus        79 ~~lk~~~~~v~L~V~r~   95 (96)
T d2fcfa1          79 EAIRKAGNPVVFMVQSI   95 (96)
T ss_dssp             HHHHTCCSSEEEEEECC
T ss_pred             HHHHcCCCeEEEEEEEc
Confidence            99998888999999884

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=8.5e-08  Score=71.81  Aligned_cols=77  Identities=23%  Similarity=0.355  Sum_probs=61.3

Q ss_pred             EEEEecC--CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           87 YEVEIEQ--PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        87 ~~v~l~K--PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      |+|+|.+  |+|+.+.-+.  +.++||..|.||+-|+++| +++||+|+.+..    +-..-..+.+++..|+.....+.
T Consensus         3 ~~V~l~~~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg----~~v~~~s~~ev~~~i~~~~~~v~   77 (85)
T d1rgwa_           3 YSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDG----VNTDTMTHLEAQNKIKSASYNLS   77 (85)
T ss_dssp             EEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETT----EECTTCCHHHHHHHHTTCSSCEE
T ss_pred             EEEEecCCCCCCEEEEeecCCCCCEEEEEecCCChHHhCC-CCCCCEEEEECC----EECCCCCHHHHHHHHHcCCCEEE
Confidence            6777755  6788887653  3479999999999999877 999999999753    33334566789999998888999


Q ss_pred             EEEeec
Q 022783          163 MKMQKR  168 (292)
Q Consensus       163 l~l~r~  168 (292)
                      |+++|.
T Consensus        78 L~V~R~   83 (85)
T d1rgwa_          78 LTLQKS   83 (85)
T ss_dssp             EEEESC
T ss_pred             EEEEEC
Confidence            999884

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.8e-07  Score=70.81  Aligned_cols=80  Identities=20%  Similarity=0.387  Sum_probs=62.4

Q ss_pred             ceEEEEecCC--ceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           85 EEYEVEIEQP--YGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        85 ~~~~v~l~KP--lGl~~~~~~~-----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      +.++|+++|+  ||+.+..+.+     .++||..|.|||-|+++|.+++||+|+.+-.    .-..-..+.+++..|+.-
T Consensus         4 ei~~v~l~~~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~s~~ea~~~l~~~   79 (92)
T d1t2ma1           4 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG----RSLVGLSQERAAELMTRT   79 (92)
T ss_dssp             EEEEEEEECSSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETT----EECTTCCHHHHHHHHHSC
T ss_pred             eEEEEEEeCCCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCC----eecCCCCHHHHHHHHHcC
Confidence            4567777765  6666654422     2799999999999999999999999999763    222234567889999988


Q ss_pred             CCceEEEEeec
Q 022783          158 VGPLLMKMQKR  168 (292)
Q Consensus       158 ~g~v~l~l~r~  168 (292)
                      .++|.|++.|.
T Consensus        80 ~~~v~L~v~R~   90 (92)
T d1t2ma1          80 SSVVTLEVAKQ   90 (92)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEeC
Confidence            89999999985

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.5e-07  Score=71.85  Aligned_cols=84  Identities=15%  Similarity=0.363  Sum_probs=66.5

Q ss_pred             ceEEEEecC---CceeEEeee----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHH
Q 022783           85 EEYEVEIEQ---PYGLKFAKG----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~----------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~  151 (292)
                      +.++|+|.|   +||+.+.-+          .+.++||..|.|+|.|+++|.+++||+|+.+-.    .-..-..+-++.
T Consensus         8 ~~~~V~l~k~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg----~~v~~~t~~eav   83 (107)
T d1uhpa_           8 KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNG----RDLSRATHDQAV   83 (107)
T ss_dssp             EEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETT----EECTTCCHHHHH
T ss_pred             CEEEEEEEECCCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECC----EECCCCCHHHHH
Confidence            458899975   578999643          244899999999999999999999999999763    222334566888


Q ss_pred             HHhhccCCceEEEEeeccCCc
Q 022783          152 YTIRQRVGPLLMKMQKRYGKM  172 (292)
Q Consensus       152 ~ai~~r~g~v~l~l~r~~~~~  172 (292)
                      .+|+.-...+.|++.|.....
T Consensus        84 ~~lk~~~~~v~l~v~r~~~~P  104 (107)
T d1uhpa_          84 EAFKTAKEPIVVQVLRRTSGP  104 (107)
T ss_dssp             HHHHHCCSSEEEEEEECCSSC
T ss_pred             HHHHhCCCcEEEEEEECCCCc
Confidence            999988889999998875543

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.1e-07  Score=71.66  Aligned_cols=77  Identities=16%  Similarity=0.348  Sum_probs=63.6

Q ss_pred             ceEEEEecC---CceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc
Q 022783           85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~-----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~  156 (292)
                      +..+|+|.|   +||+.+..+.     +.++||..|.++|.|+++|.+++||+|+.+-    ++-+....+.++..+|++
T Consensus         2 ~~~~V~l~K~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~IN----g~~v~~~~~~~v~~~l~~   77 (88)
T d2fnea1           2 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVN----GQSLEGVTHEEAVAILKR   77 (88)
T ss_dssp             EEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEET----TEECTTCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEEC----CEECCCCCHHHHHHHHHc
Confidence            357888887   7999997541     2389999999999999999999999999964    555566677789999999


Q ss_pred             cCCceEEEE
Q 022783          157 RVGPLLMKM  165 (292)
Q Consensus       157 r~g~v~l~l  165 (292)
                      ..+++.|++
T Consensus        78 ~~~~v~L~V   86 (88)
T d2fnea1          78 TKGTVTLMV   86 (88)
T ss_dssp             CCSSEEEEE
T ss_pred             CCCcEEEEE
Confidence            889998875

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.3e-07  Score=72.22  Aligned_cols=81  Identities=16%  Similarity=0.230  Sum_probs=65.7

Q ss_pred             EEEEecC----CceeEEeeeC---CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC
Q 022783           87 YEVEIEQ----PYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (292)
Q Consensus        87 ~~v~l~K----PlGl~~~~~~---~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g  159 (292)
                      +.|+|.|    +|||.+..+.   .+++||..|.|+|.|+++|.|++||.|+.+-.    .-.....+.+++..|+.-.+
T Consensus        17 ~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~~~~~v~~~l~~~~~   92 (117)
T d1v62a_          17 LMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDG----TSMEHCSLLEATKLLASISE   92 (117)
T ss_dssp             EEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETT----EETTSCCHHHHHHHHHSCSS
T ss_pred             EEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECC----EecCCCCHHHHHHHHHcCCC
Confidence            6688876    5999998753   34899999999999999999999999999753    33344566788999998888


Q ss_pred             ceEEEEeeccCC
Q 022783          160 PLLMKMQKRYGK  171 (292)
Q Consensus       160 ~v~l~l~r~~~~  171 (292)
                      .|.|++.|....
T Consensus        93 ~v~l~v~~~~~~  104 (117)
T d1v62a_          93 KVRLEILPVPQS  104 (117)
T ss_dssp             EEEEEECCBTTB
T ss_pred             cEEEEEEECCCC
Confidence            999999876553

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=1.8e-07  Score=75.17  Aligned_cols=84  Identities=24%  Similarity=0.424  Sum_probs=63.4

Q ss_pred             cceEEEEecCC----ceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783           84 YEEYEVEIEQP----YGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (292)
Q Consensus        84 ~~~~~v~l~KP----lGl~~~~~~------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a  153 (292)
                      ...++|+|.|.    |||.+.-+.      +.++||..|.|+|-|+++|.|++||+|++|..    +-..-..+-+++..
T Consensus        24 ~~~~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~~~~e~~~~   99 (127)
T d1wg6a_          24 QLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNG----ETLLGKSNHEAMET   99 (127)
T ss_dssp             EEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETT----EESTTSCHHHHHHH
T ss_pred             cEEEEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECC----EECCCCCHHHHHHH
Confidence            34577788664    999997431      34899999999999999999999999999753    22333445577777


Q ss_pred             hhcc-------CCceEEEEeeccCC
Q 022783          154 IRQR-------VGPLLMKMQKRYGK  171 (292)
Q Consensus       154 i~~r-------~g~v~l~l~r~~~~  171 (292)
                      ||.-       .++|.|++.|..++
T Consensus       100 lr~a~~~~~~~~~~V~L~V~R~~~p  124 (127)
T d1wg6a_         100 LRRSMSMEGNIRGMIQLVILRRSGP  124 (127)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEECSCS
T ss_pred             HHhcccccCCCCCEEEEEEeeCCCC
Confidence            7742       67899999997654

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.4e-07  Score=71.60  Aligned_cols=83  Identities=18%  Similarity=0.351  Sum_probs=64.3

Q ss_pred             ccceEEEEecC---CceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~--~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      .+++++|+|.|   +||+.+.-+  .++++||..|.|+|-|+++|.|++||+|++|-.    .-..-..+.+++.+|+.-
T Consensus         7 ~~~~~~V~l~k~~~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg----~~v~~~t~~e~~~~l~~~   82 (103)
T d1uepa_           7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDG----IPVAGKTHRYVIDLMHHA   82 (103)
T ss_dssp             SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETT----EECTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEEEEeCCceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECC----EECCCCCHHHHHHHHHhC
Confidence            45778888876   589999754  345799999999999999999999999999863    222334566788899853


Q ss_pred             --CCceEEEEeecc
Q 022783          158 --VGPLLMKMQKRY  169 (292)
Q Consensus       158 --~g~v~l~l~r~~  169 (292)
                        .+.|.|++.|..
T Consensus        83 ~~~~~v~l~v~r~~   96 (103)
T d1uepa_          83 ARNGQVNLTVRRKV   96 (103)
T ss_dssp             HHHTEEEEEEEEEC
T ss_pred             CCCCEEEEEEEeCC
Confidence              456889888854

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.5e-07  Score=68.73  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             CceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEE
Q 022783           94 PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM  165 (292)
Q Consensus        94 PlGl~~~~~~~----G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l  165 (292)
                      +|||.+.++.+    +++||..|.|+|-|+++|.+++||.|+.+.    ++-..-..+-+++..|+.-...+.++|
T Consensus        11 ~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VN----g~~v~~~s~~e~~~~l~~~~~~~~v~L   82 (85)
T d1x45a1          11 ILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSIN----GTSLVGLPLSTCQSIIKGLKNQSRVKL   82 (85)
T ss_dssp             CCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEET----TEECTTCCHHHHHHHHHTTTTCSEEEE
T ss_pred             ccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEEC----CEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            79999976533    379999999999999999999999999965    344445566788899996555554444

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=6.4e-07  Score=69.24  Aligned_cols=81  Identities=22%  Similarity=0.404  Sum_probs=61.5

Q ss_pred             ceEEEEecC----CceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      ...+|+|.|    +||+.+..+.  +-++||..|.++|-|+++| +++||+|+++-..    -.......+++..|+. +
T Consensus        15 ~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~----~v~~~~~~ev~~llk~-~   88 (104)
T d1wi2a_          15 LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDV----DFQDIEHSKAVEILKT-A   88 (104)
T ss_dssp             CCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTE----ECSSCCHHHHHHHHHH-S
T ss_pred             cCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcc-cccCCEEEEECCE----ECCCCCHHHHHHHHhc-C
Confidence            345677766    4889997653  3489999999999999999 9999999998642    1222345678889986 4


Q ss_pred             CceEEEEeeccCC
Q 022783          159 GPLLMKMQKRYGK  171 (292)
Q Consensus       159 g~v~l~l~r~~~~  171 (292)
                      +.+.|+++|..++
T Consensus        89 ~~v~l~V~~~~~P  101 (104)
T d1wi2a_          89 REISMRVRFFSGP  101 (104)
T ss_dssp             SSEEEEEECCCCS
T ss_pred             CeEEEEEEECCCC
Confidence            6899999886654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.9e-07  Score=86.69  Aligned_cols=96  Identities=9%  Similarity=-0.025  Sum_probs=63.0

Q ss_pred             HhhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783          186 AERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak  264 (292)
                      +..|.|.+..+......+.....+.++... ...+++|..+...++|++|+.+|.+|++++|++   +.+|+|+|.+|..
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~---~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN---GQPYNQLAILASS  198 (497)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---SHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHH
Confidence            345667777776666665222222233333 345699999999999999999999999999974   5679999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCcc
Q 022783          265 LNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       265 Lgq~eeALe~LekAIelG~~  284 (292)
                      .|++.+|+.+|.+||.+..+
T Consensus       199 ~~~~~~A~~~y~ral~~~~~  218 (497)
T d1ya0a1         199 KGDHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             TTCHHHHHHHHHHHHSSSBC
T ss_pred             cCCHHHHHHHHHHHHhCCCC
Confidence            99999999999999988644

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.9e-07  Score=72.08  Aligned_cols=73  Identities=29%  Similarity=0.456  Sum_probs=59.7

Q ss_pred             CceeEEeee-----CCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEe
Q 022783           94 PYGLKFAKG-----RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ  166 (292)
Q Consensus        94 PlGl~~~~~-----~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~  166 (292)
                      .||+.+.-+     .+|  ++||..|.|+|-|+++|.|++||+|+.+.    +.-+.-..+.+++.+|+...+.+.|+++
T Consensus        31 glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~IN----g~~v~~~s~~e~~~~i~~~~~~v~l~v~  106 (117)
T d1ujda_          31 GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWN----GIPLTSKTYEEVQSIISQQSGEAEICVR  106 (117)
T ss_dssp             SCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEET----TEECTTCCHHHHHHHHSCCSSCEEEEEE
T ss_pred             ccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEEC----CEECCCCcHHHHHHHHHcCCCeEEEEEE
Confidence            399999633     223  79999999999999999999999999965    3444556777899999988889999999


Q ss_pred             eccC
Q 022783          167 KRYG  170 (292)
Q Consensus       167 r~~~  170 (292)
                      |...
T Consensus       107 r~~~  110 (117)
T d1ujda_         107 LDLN  110 (117)
T ss_dssp             SSCC
T ss_pred             ECCC
Confidence            8653

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.34  E-value=3.5e-07  Score=70.12  Aligned_cols=71  Identities=21%  Similarity=0.451  Sum_probs=56.3

Q ss_pred             CCceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           93 QPYGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        93 KPlGl~~~~~~-----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      +|||+.+..+.           +.++||..|.|||.|+++|.+++||+|+.+..    .-..-..+.+++..|+.-.+.+
T Consensus        15 ~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg----~~v~~~~~~~~~~~l~~~~~~v   90 (98)
T d1rzxa_          15 KPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNG----IEVAGKTLDQVTDMMVANSSNL   90 (98)
T ss_dssp             SCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETT----EECTTCCHHHHHHHHHHTCTEE
T ss_pred             CcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECC----EECCCCCHHHHHHHHHcCCCeE
Confidence            48999987542           22799999999999999999999999999753    2223345668889999888889


Q ss_pred             EEEEee
Q 022783          162 LMKMQK  167 (292)
Q Consensus       162 ~l~l~r  167 (292)
                      .|++..
T Consensus        91 ~l~v~p   96 (98)
T d1rzxa_          91 IITVKP   96 (98)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            988764

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.2e-06  Score=68.28  Aligned_cols=82  Identities=17%  Similarity=0.242  Sum_probs=63.9

Q ss_pred             cceEEEEecC----CceeEEeeeC---------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhH
Q 022783           84 YEEYEVEIEQ----PYGLKFAKGR---------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (292)
Q Consensus        84 ~~~~~v~l~K----PlGl~~~~~~---------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~  150 (292)
                      .+.++|+|.|    +||+.+.-+.         ..++||..|.|||-|+++|.+++||.|+.+-.    .-.....+-++
T Consensus         9 ~~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~~~~ev   84 (114)
T d1uewa_           9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNG----QSIINMPHADI   84 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETT----BCTTTSCHHHH
T ss_pred             ceeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCC----cccCCCcHHHH
Confidence            3567888866    5888886542         23699999999999999999999999999753    33333455688


Q ss_pred             HHHhhccCCceEEEEeecc
Q 022783          151 MYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       151 ~~ai~~r~g~v~l~l~r~~  169 (292)
                      +..|+.-.+.|.|++.|..
T Consensus        85 ~~ll~~~~~~v~l~V~r~~  103 (114)
T d1uewa_          85 VKLIKDAGLSVTLRIIPQE  103 (114)
T ss_dssp             HHHHHHTTTEEEEEECCCS
T ss_pred             HHHHHcCCCeEEEEEEeCC
Confidence            9999977788999998853

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2e-06  Score=68.51  Aligned_cols=85  Identities=13%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             ccceEEEEecC---CceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           83 KYEEYEVEIEQ---PYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        83 ~~~~~~v~l~K---PlGl~~~~~--~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      .-+.++|+|.|   +||+.+.-+  .++++||..|.|+|-|+++|.|++||+|+.+-.    .-..-..+-++...|+.-
T Consensus        17 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg----~~v~~~t~~eav~~l~~~   92 (123)
T d1ueqa_          17 KGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINE----VCVLGHTHADVVKLFQSV   92 (123)
T ss_dssp             CSEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETT----EECTTSCHHHHHHHHHTS
T ss_pred             CCeEEEEEEEECCCeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECC----EECCCCCHHHHHHHHHcC
Confidence            34667888764   799999875  356899999999999999999999999999763    223334556788888854


Q ss_pred             -C-CceEEEEeeccCC
Q 022783          158 -V-GPLLMKMQKRYGK  171 (292)
Q Consensus       158 -~-g~v~l~l~r~~~~  171 (292)
                       . ..|.|++.|+...
T Consensus        93 ~~g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          93 PIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             CTTCEEEEEEEESCCC
T ss_pred             CCCCEEEEEEEcCCCC
Confidence             3 4589999996544

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=5.2e-07  Score=69.56  Aligned_cols=68  Identities=22%  Similarity=0.371  Sum_probs=56.8

Q ss_pred             CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEE
Q 022783           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM  165 (292)
Q Consensus        93 KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l  165 (292)
                      .|||+.|.. .++++||..|.|||-|+++|.|++||.|+.+..    .-.....+.++...|+...++|.|++
T Consensus        30 ~~lG~~v~~-~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg----~~v~~~~~~~~~~ll~~~~~~v~L~v   97 (100)
T d1va8a1          30 IPLGATVRN-EMDSVIISRIVKGGAAEKSGLLHEGDEVLEING----IEIRGKDVNEVFDLLSDMHGTLTFVL   97 (100)
T ss_dssp             CCCCEEEEE-CSSSEEEEEECTTSHHHHHTCCCTTCEEEEETT----EECTTCCHHHHHHHHHHCCEEEEEEE
T ss_pred             CCccEEEEe-cCCCEEEEEECCCChhhhhcccCccCEEEEECC----EEEcCCCHHHHHHHHHcCCCeEEEEE
Confidence            479999976 456899999999999999999999999999863    33334567789999998888888876

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1.4e-06  Score=69.07  Aligned_cols=79  Identities=18%  Similarity=0.228  Sum_probs=59.4

Q ss_pred             EEecCCceeEEeeeC---CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc----CCce
Q 022783           89 VEIEQPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR----VGPL  161 (292)
Q Consensus        89 v~l~KPlGl~~~~~~---~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r----~g~v  161 (292)
                      +.-+.+|||.+.-+.   .|++||..|.|+|-|+++|.|++||+|+.+...    -..-....+++..|++-    ...|
T Consensus        24 ~~~~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~----~v~~~s~~e~~~~l~~~~~~~~~~V   99 (118)
T d1v6ba_          24 IKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGK----IVTDYTLAEAEAALQKAWNQGGDWI   99 (118)
T ss_dssp             EESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSC----BCTTCBHHHHHHHHHHHHHHTCSEE
T ss_pred             ecCCCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCE----ECCCCcHHHHHHHHHhcccCCCCEE
Confidence            333568999998764   368999999999999999999999999998642    22223455677777743    4458


Q ss_pred             EEEEeeccCC
Q 022783          162 LMKMQKRYGK  171 (292)
Q Consensus       162 ~l~l~r~~~~  171 (292)
                      .|++.|...+
T Consensus       100 ~L~v~r~pp~  109 (118)
T d1v6ba_         100 DLVVAVCPPK  109 (118)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEEeCCCC
Confidence            9999987544

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=4.7e-07  Score=68.91  Aligned_cols=81  Identities=21%  Similarity=0.413  Sum_probs=64.4

Q ss_pred             eEEEEec--CCceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           86 EYEVEIE--QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        86 ~~~v~l~--KPlGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      .++|++.  .|+|+.+.-+.|.  .+||..|.|++-|+++| +++||+|+.+..    +-..-...-+++..|+.-.++|
T Consensus         7 ~~tv~~~g~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg----~~v~~~~~~~~~~~l~~~~~~v   81 (94)
T d1vb7a_           7 GLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAING----QSAENMLHAEAQSKIRQSASPL   81 (94)
T ss_dssp             CEEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETT----EECTTCCHHHHHHHHHTCCSSE
T ss_pred             eEEEEEECCCcCCEEEEeeccCCCCEEEEeccCCChhhhCC-CCCCCEEEEECC----EECCCCCHHHHHHHHHcCCCeE
Confidence            3666665  5899999877654  78999999999999987 999999999763    3333345568899999888999


Q ss_pred             EEEEeeccCC
Q 022783          162 LMKMQKRYGK  171 (292)
Q Consensus       162 ~l~l~r~~~~  171 (292)
                      .|+++|+.++
T Consensus        82 ~L~V~R~~~p   91 (94)
T d1vb7a_          82 RLQLDRSSGP   91 (94)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEECCCC
Confidence            9999997654

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2e-06  Score=68.88  Aligned_cols=78  Identities=22%  Similarity=0.459  Sum_probs=60.1

Q ss_pred             ceEEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~  158 (292)
                      +++.|+|.|    +||+.+.-+.|  -++||..|.|+|.|+++| +++||+|+.|-.    .-..-..+-+++..|+. +
T Consensus        20 ~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg----~~v~~~s~~evv~~lr~-~   93 (128)
T d1uf1a_          20 DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNG----RSFLNILHDEAVRLLKS-S   93 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETT----EECSSCCHHHHHHHHTT-C
T ss_pred             CeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcC-CCCCCEEEEECC----EECCCCCHHHHHHHHhc-C
Confidence            557777744    68999986543  389999999999999999 999999999753    22223355678899975 5


Q ss_pred             CceEEEEeec
Q 022783          159 GPLLMKMQKR  168 (292)
Q Consensus       159 g~v~l~l~r~  168 (292)
                      +.+.|++.+.
T Consensus        94 ~~v~l~v~~~  103 (128)
T d1uf1a_          94 RHLILTVKDV  103 (128)
T ss_dssp             SEEEEEEECC
T ss_pred             CcEEEEEEEC
Confidence            6888988775

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.2e-06  Score=67.85  Aligned_cols=83  Identities=18%  Similarity=0.236  Sum_probs=61.7

Q ss_pred             ceEEEEecC----CceeEEeee---CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc
Q 022783           85 EEYEVEIEQ----PYGLKFAKG---RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~---~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r  157 (292)
                      ..+.|+|.|    +||+.+..+   .++++||..|.|||-|+++|.+++||+|++|..    .-......-+++..|+.-
T Consensus         8 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg----~~v~~~~~~ea~~~l~~~   83 (107)
T d1x6da1           8 GIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSING----KSLKGTTHHDALAILRQA   83 (107)
T ss_dssp             TEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETT----EECSSCCHHHHHHHHHHT
T ss_pred             CcEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECC----EecCCCCHHHHHHHHHcC
Confidence            345666654    689999754   356999999999999999999999999999863    223334566888999977


Q ss_pred             CCceEEEEeeccCC
Q 022783          158 VGPLLMKMQKRYGK  171 (292)
Q Consensus       158 ~g~v~l~l~r~~~~  171 (292)
                      .+.+.+.+.|+...
T Consensus        84 ~~~~~l~v~~r~~~   97 (107)
T d1x6da1          84 REPRQAVIVTRKLT   97 (107)
T ss_dssp             TSSSEEEEEEECCC
T ss_pred             CCCEEEEEEECCCC
Confidence            66666665554433

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.7e-06  Score=66.74  Aligned_cols=80  Identities=23%  Similarity=0.429  Sum_probs=62.5

Q ss_pred             ccceEEEEecC----CceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhH
Q 022783           83 KYEEYEVEIEQ----PYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (292)
Q Consensus        83 ~~~~~~v~l~K----PlGl~~~~~~~--------G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~  150 (292)
                      -.+.++|+|.|    ++|+.+..+.+        .++||..|.|||-|+  +.+++||+|+.+.    +.-+....+-++
T Consensus         5 ~~e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~IN----g~~v~~~~~~ev   78 (104)
T d2csja1           5 IWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVN----GTPMEDVLHSFA   78 (104)
T ss_dssp             EEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEES----SCBCBTCCHHHH
T ss_pred             cCccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEEC----CEECCCCCHHHH
Confidence            34678899877    58899975532        379999999999886  4499999999975    344444566678


Q ss_pred             HHHhhccCCceEEEEeec
Q 022783          151 MYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus       151 ~~ai~~r~g~v~l~l~r~  168 (292)
                      ...|+.....+.|+++|+
T Consensus        79 ~~ll~~~~~~v~l~V~R~   96 (104)
T d2csja1          79 VQQLRKSGKIAAIVVKRP   96 (104)
T ss_dssp             HHHHHHSCSEEEEEEEEE
T ss_pred             HHHHHcCCCEEEEEEEeC
Confidence            899997778899999885

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.1e-06  Score=69.92  Aligned_cols=83  Identities=18%  Similarity=0.310  Sum_probs=62.1

Q ss_pred             cccceEEEEecC-C---ceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHH
Q 022783           82 EKYEEYEVEIEQ-P---YGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (292)
Q Consensus        82 ~~~~~~~v~l~K-P---lGl~~~~~~------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~  151 (292)
                      ...+..+|+|.| |   ||+.+.-+.      ..++||..|.|+|-|+++|.|++||+|+.+-.    .=.....+-+++
T Consensus        12 ~~~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg----~~v~~~~~~e~~   87 (122)
T d1v5qa_          12 VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING----IPTEDSTFEEAN   87 (122)
T ss_dssp             CCEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETT----EESSSSCHHHHH
T ss_pred             ccceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECC----CcCCCCCHHHHH
Confidence            344778999977 3   899997542      23799999999999999999999999999853    222233455788


Q ss_pred             HHhhccCCceEEEEeec
Q 022783          152 YTIRQRVGPLLMKMQKR  168 (292)
Q Consensus       152 ~ai~~r~g~v~l~l~r~  168 (292)
                      .+|++-+..+.|+|.+.
T Consensus        88 ~~lk~~~~~~~l~l~~~  104 (122)
T d1v5qa_          88 QLLRDSSITSKVTLEIE  104 (122)
T ss_dssp             HHHHHHTTTTCEEEEEE
T ss_pred             HHHHcCCCceEEEEEEe
Confidence            89997666666666553

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.9e-06  Score=65.45  Aligned_cols=78  Identities=17%  Similarity=0.375  Sum_probs=60.5

Q ss_pred             EEEEe----cCCceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783           87 YEVEI----EQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (292)
Q Consensus        87 ~~v~l----~KPlGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~  160 (292)
                      ..|.|    .++||+.+.-+.++  ++||..|.++|-|+++| +++||.|+.+..    +-+.-..+.+++..|+.. ++
T Consensus        10 ~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg----~~v~~~~~~~v~~~lk~~-~~   83 (101)
T d1x5na1          10 KKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNG----VDFSNLDHKEAVNVLKSS-RS   83 (101)
T ss_dssp             EEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETT----EETTSCCTTHHHHHHHHC-SS
T ss_pred             EEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhCC-CCcccEEEEECC----EECCCCCHHHHHHHHhCC-CC
Confidence            44555    45899999877554  89999999999999998 999999999763    344445677888999864 57


Q ss_pred             eEEEEeeccC
Q 022783          161 LLMKMQKRYG  170 (292)
Q Consensus       161 v~l~l~r~~~  170 (292)
                      +.|.+.+.-|
T Consensus        84 ~~l~v~~~~g   93 (101)
T d1x5na1          84 LTISIVAAAG   93 (101)
T ss_dssp             EEEEECSSTT
T ss_pred             EEEEEEECCC
Confidence            8888877544

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.5e-06  Score=68.99  Aligned_cols=84  Identities=20%  Similarity=0.341  Sum_probs=63.6

Q ss_pred             ceEEEEecC-----CceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh
Q 022783           85 EEYEVEIEQ-----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (292)
Q Consensus        85 ~~~~v~l~K-----PlGl~~~~~~----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~  155 (292)
                      +..+|+|.|     .|||.+.-+.    +.+|||..|.|||-|+++|.+++||+|+.+-.   ..|   ..+-++...++
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg---~~v---~~~~~~~~~l~   92 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQING---IEV---QNREEAVALLT   92 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESS---CBC---CSHHHHHHHHT
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECC---EEC---CCHHHHHHHHh
Confidence            445677766     4999997643    34899999999999999999999999999874   222   24445666677


Q ss_pred             c-cCCceEEEEeeccCCccc
Q 022783          156 Q-RVGPLLMKMQKRYGKMEQ  174 (292)
Q Consensus       156 ~-r~g~v~l~l~r~~~~~~~  174 (292)
                      . +.+.|.|.+.|+......
T Consensus        93 ~~~~~~v~l~v~r~~~~~~~  112 (124)
T d1wh1a_          93 SEENKNFSLLIARPELQLDE  112 (124)
T ss_dssp             CSSCCSCCEEEEECSSCCCC
T ss_pred             hCCCCcEEEEEEeCCCcccc
Confidence            5 567899999998777543

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.1e-06  Score=64.67  Aligned_cols=83  Identities=22%  Similarity=0.427  Sum_probs=62.4

Q ss_pred             ccccceEEEEecC--CceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchh
Q 022783           81 EEKYEEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (292)
Q Consensus        81 ~~~~~~~~v~l~K--PlGl~~~~~~----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g  148 (292)
                      +...+++.|+++|  .||+.+.-+.          +.+|||..|.|+|.|++  .+++||+|+++..    .-..-....
T Consensus         7 ~~~~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg----~~v~~~t~~   80 (103)
T d2h3la1           7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANG----YSFINIEHG   80 (103)
T ss_dssp             CCEEEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETT----EECSSCCHH
T ss_pred             ccccEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECC----EECCCCCHH
Confidence            3445667777765  4788887542          45899999999999986  4999999999864    222233556


Q ss_pred             hHHHHhhccCCceEEEEeecc
Q 022783          149 RTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       149 ~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      +++..|+.-.+.+.|++.|+.
T Consensus        81 eav~~l~~~~~~v~L~V~R~~  101 (103)
T d2h3la1          81 QAVSLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHHHHHHCCSEEEEEEEEEE
T ss_pred             HHHHHHHhCCCeEEEEEEEEC
Confidence            788999988889999999964

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.8e-06  Score=63.35  Aligned_cols=68  Identities=19%  Similarity=0.267  Sum_probs=55.1

Q ss_pred             CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus        94 PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      ++|+.+.  .+.++||..|.+||.|+++| +++||+|+.+-..    -......-+++..|++..+++.|.+.|.
T Consensus         9 g~Gf~l~--~~~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~----~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1           9 GFGFTIC--CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNER----PVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             BTSEEEE--CSSSCEEEEECTTSHHHHHT-CCTTCEEEEETTE----ECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             cccEEEE--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE----ECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            5777775  35689999999999999999 9999999997642    2222334578899999999999999985

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.6e-06  Score=64.49  Aligned_cols=73  Identities=21%  Similarity=0.379  Sum_probs=58.3

Q ss_pred             cCCceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783           92 EQPYGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus        92 ~KPlGl~~~~~-~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      +.++|+.+..+ .+.++||..|.|||.|+++| |++||+|+.+-.    .-...-..-++...|+.-.+.+.|++.++-
T Consensus        13 ~~g~Gf~i~~~~~~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg----~~v~~~t~~e~~~ll~~~~~~v~L~v~~~~   86 (91)
T d1g9oa_          13 PNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNG----ENVEKETHQQVVSRIRAALNAVRLLVVDPE   86 (91)
T ss_dssp             TTBCCEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEETT----EECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred             CCeeeEEEEecCCCCCEEEEEEcCCCHHHHcC-CCCCCEEEEECC----EECCCCCHHHHHHHHHcCCCeEEEEEECCC
Confidence            35789999766 45599999999999999999 999999999763    333334455788999988889999887743

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.6e-06  Score=67.47  Aligned_cols=72  Identities=25%  Similarity=0.384  Sum_probs=57.4

Q ss_pred             CCceeEEeeeC---CC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc--cCCceEEEE
Q 022783           93 QPYGLKFAKGR---DG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKM  165 (292)
Q Consensus        93 KPlGl~~~~~~---~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~--r~g~v~l~l  165 (292)
                      .+||+.+.-+.   .|  ++||..|.|||-|+++|.+++||+|+.+-    +.-+.-..+.+++..|+.  ....+.|.+
T Consensus        30 ~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VN----g~~~~~~t~~ea~~~l~~~~~~~~v~l~v  105 (108)
T d2cssa1          30 ALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWN----GKPLPGATNEEVYNIILESKSEPQVEIIV  105 (108)
T ss_dssp             SCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEES----SCBCTTSCHHHHHHHHHHGGGCSCEEEEE
T ss_pred             CCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEEC----CEECCCCCHHHHHHHHHhCCCCCEEEEEE
Confidence            46999996542   22  89999999999999999999999999976    344445677789999984  345789988


Q ss_pred             eec
Q 022783          166 QKR  168 (292)
Q Consensus       166 ~r~  168 (292)
                      .||
T Consensus       106 ~RP  108 (108)
T d2cssa1         106 SRP  108 (108)
T ss_dssp             EEC
T ss_pred             eCc
Confidence            886

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=2.6e-06  Score=64.91  Aligned_cols=75  Identities=24%  Similarity=0.389  Sum_probs=55.8

Q ss_pred             EEecCCceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc----cCCc
Q 022783           89 VEIEQPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ----RVGP  160 (292)
Q Consensus        89 v~l~KPlGl~~~~~~----~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~----r~g~  160 (292)
                      +.=.-+||+.+..+.    +.++||..|.|||.|+++|.+++||.|+.+..    .-..-..+.+++..|++    ...+
T Consensus        14 ~~~~~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~~~~ea~~~l~~~~~~~~~~   89 (96)
T d1wi4a1          14 VTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINK----ESMIGVSFEEAKSIITRAKLRSESP   89 (96)
T ss_dssp             ECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETT----SCCTTCCHHHHHHHHHHSCCSSSSC
T ss_pred             ecCCCccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECC----EECCCCCHHHHHHHHHhccCCCCCe
Confidence            333446788887542    34899999999999999999999999999864    22233456677788874    2577


Q ss_pred             eEEEEee
Q 022783          161 LLMKMQK  167 (292)
Q Consensus       161 v~l~l~r  167 (292)
                      +.|.+.|
T Consensus        90 vel~~~R   96 (96)
T d1wi4a1          90 WEIAFIR   96 (96)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            8888866

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.2e-06  Score=68.26  Aligned_cols=74  Identities=20%  Similarity=0.408  Sum_probs=58.8

Q ss_pred             CCceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           93 QPYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        93 KPlGl~~~~~-----------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      .+||+.+.-+           .+.++||..|.|+|-|+++|.+++||+|++|..    .-..-....+++.+|+.-...|
T Consensus        21 ~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg----~~v~~~t~~ea~~~lk~~~~~v   96 (111)
T d1ujua_          21 ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQ----QSLLGLTHGEAVQLLRSVGDTL   96 (111)
T ss_dssp             CCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSS----CBCTTSCHHHHHHHHSSCSSEE
T ss_pred             CccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCC----cccCCCCHHHHHHHHHcCCCeE
Confidence            3688999643           234899999999999999999999999999763    2223335567889999878899


Q ss_pred             EEEEeeccC
Q 022783          162 LMKMQKRYG  170 (292)
Q Consensus       162 ~l~l~r~~~  170 (292)
                      .|++.|++.
T Consensus        97 ~L~V~r~~~  105 (111)
T d1ujua_          97 TVLVCDGFE  105 (111)
T ss_dssp             EECCCCCCC
T ss_pred             EEEEEECCC
Confidence            999998765

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=3.1e-06  Score=64.70  Aligned_cols=79  Identities=19%  Similarity=0.329  Sum_probs=59.1

Q ss_pred             ceEEEEecC----CceeEEeeeC--------------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc
Q 022783           85 EEYEVEIEQ----PYGLKFAKGR--------------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE  146 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~--------------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~  146 (292)
                      ++.+|+|.|    ++|+.+.-+.              .+++||..|.|||.|+++| |++||+|+++-..    =..-..
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~----~v~~~~   79 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQ----NVVKVG   79 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTE----ECTTCC
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCe----EcCCCC
Confidence            467788877    6888885432              2368999999999999999 9999999997642    111223


Q ss_pred             hhhHHHHhhccCCceEEEEeec
Q 022783          147 YGRTMYTIRQRVGPLLMKMQKR  168 (292)
Q Consensus       147 ~g~~~~ai~~r~g~v~l~l~r~  168 (292)
                      .-++..+|+.-...|.|++.+.
T Consensus        80 h~evv~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          80 HRQVVNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCeEEEEEEec
Confidence            3478889998778888887663

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.14  E-value=7.5e-07  Score=71.09  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=52.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCccChh
Q 022783          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL----------NQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       224 ~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL----------gq~eeALe~LekAIelG~~Df~  287 (292)
                      .+-++++|++|+..|++||+++|++   ..+|+|+|.||..+          +++++|+.++++||++.+++..
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~---~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~   76 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE   76 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcc---hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH
Confidence            4566788999999999999999985   56799999999854          5568999999999999988654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.6e-06  Score=64.43  Aligned_cols=80  Identities=9%  Similarity=-0.049  Sum_probs=53.3

Q ss_pred             HHHhhccccchhhHHHHHHHhhHHHHHh--hH-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783          184 IRAERNSGVISNRVREIQMQNYMKKKEQ--KE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea~Y~kkk~l--k~-~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac  260 (292)
                      -+..++.|+...++.-++++--......  .. ...-..++|..+++.|+|++|++.|+++|+++|++   ..+++|++.
T Consensus        12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~---~~a~~Nl~~   88 (95)
T d1tjca_          12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRANGNLKY   88 (95)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC---HHHHHHHHH
Confidence            3555666666666555555421111100  01 12334599999999999999999999999999985   457999987


Q ss_pred             HHHhcC
Q 022783          261 CYSKLN  266 (292)
Q Consensus       261 cyakLg  266 (292)
                      +...++
T Consensus        89 ~~~~l~   94 (95)
T d1tjca_          89 FEYIMA   94 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            765543

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.8e-06  Score=66.09  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=60.8

Q ss_pred             ccceEEEEecC----CceeEEeee------CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHH
Q 022783           83 KYEEYEVEIEQ----PYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (292)
Q Consensus        83 ~~~~~~v~l~K----PlGl~~~~~------~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~  152 (292)
                      ..+.++|+|.|    ++|+.+.-+      ...++||..|.++|-|+++|.+++||+|+++-.    .-..-..+-+++.
T Consensus         6 ~~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg----~~v~~~t~~e~~~   81 (99)
T d1x5ra1           6 HTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSING----IATEDGTMEEANQ   81 (99)
T ss_dssp             SSEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETT----EESTTSBHHHHHH
T ss_pred             eeeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC----EECCCCCHHHHHH
Confidence            45667888865    799999743      234899999999999999999999999999763    2233445667889


Q ss_pred             HhhccCCceEEEEee
Q 022783          153 TIRQRVGPLLMKMQK  167 (292)
Q Consensus       153 ai~~r~g~v~l~l~r  167 (292)
                      .||.-...+.|+|..
T Consensus        82 ~lr~~~~~~~l~l~v   96 (99)
T d1x5ra1          82 LLRDAALAHKVVLEV   96 (99)
T ss_dssp             HHHHHHTTTCEEEEE
T ss_pred             HHHhCCCCCEEEEEE
Confidence            998665555555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.1e-06  Score=68.97  Aligned_cols=62  Identities=18%  Similarity=0.263  Sum_probs=53.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg---q~eeALe~LekAIelG~~  284 (292)
                      ++.+.+...++|++|.+.|+++|.++|++   ..++||.|+|+.+.+   ++++|+..|+++++....
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~---~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~   68 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC
Confidence            67788999999999999999999999974   457999999998755   556799999999987643

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=4.4e-06  Score=64.46  Aligned_cols=83  Identities=20%  Similarity=0.328  Sum_probs=64.8

Q ss_pred             eEEEEecCCceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEE
Q 022783           86 EYEVEIEQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM  163 (292)
Q Consensus        86 ~~~v~l~KPlGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l  163 (292)
                      ++.+.=++|+|+.+.-+.|.  .+||..|.|++.|++.+ |++||+|+.+-..    =..-...-+++..|+.-...|.|
T Consensus         8 ~v~~~g~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~----~v~~~t~~eav~li~~~~~~v~L   82 (103)
T d1wf7a_           8 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGI----SAQGMTHLEAQNKIKACTGSLNM   82 (103)
T ss_dssp             EEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTE----ECSSCCHHHHHHHHHHCSSEEEE
T ss_pred             EEEEECCCCccEEEEcccCCCCCEEEEecCCCChHHHCC-CCCCCEEEEECCE----ECCCCCHHHHHHHHHcCCCeEEE
Confidence            35666678899999887664  79999999999888655 9999999997632    22334555788889988889999


Q ss_pred             EEeeccCCcc
Q 022783          164 KMQKRYGKME  173 (292)
Q Consensus       164 ~l~r~~~~~~  173 (292)
                      +++|.....+
T Consensus        83 ~v~R~~~~~~   92 (103)
T d1wf7a_          83 TLQRASAAAK   92 (103)
T ss_dssp             EECCCSCCCC
T ss_pred             EEEECCCCCC
Confidence            9999876544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=2e-05  Score=67.79  Aligned_cols=101  Identities=9%  Similarity=-0.127  Sum_probs=73.0

Q ss_pred             HHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-------HHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCC---ccc
Q 022783          184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-------EQDLREGLQLYR-TGKYEVAREKFESVLGSKPT---PEE  250 (292)
Q Consensus       184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-------~~~~n~G~~L~k-~gdYeeAIe~fekALeldP~---~~d  250 (292)
                      ...+.|.|.+...+.+.+++  .|.+...+-...       ....+.|..+.. .|+|++|++.|++|+++.+.   ...
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~  156 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            45667777777777666664  444433322221       223478888866 59999999999999976443   223


Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          251 SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       251 ~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ...+++|+|.+|..+|+|++|++.++++++.-..
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~  190 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence            4667999999999999999999999999987533

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=9.4e-06  Score=66.63  Aligned_cols=61  Identities=11%  Similarity=0.016  Sum_probs=33.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCCccc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       221 ~G~~L~k~gdYeeAIe~fekALeldP~~~d--~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +|.++...|+|++|+..|+++|+..|+...  ...+++++|.||..+|++++|+..+++|+++
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   80 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM   80 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            455555556666666666666655554321  1234555566666666666666666655544

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=97.98  E-value=7.8e-06  Score=61.52  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             ceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC-ceEEEEeeccC
Q 022783           95 YGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMKMQKRYG  170 (292)
Q Consensus        95 lGl~~~~~~--~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g-~v~l~l~r~~~  170 (292)
                      +||.+..+.  ..+++|..|.+++.|+++| |++||+|+++-..    -......-.+...|+..+| .|.|++.|+-.
T Consensus         7 iGi~i~~~~~~~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~----~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3           7 VGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGT----AVKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             CSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTE----ECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEcCCCCceEEEEEecCCCChhHHh-hHcCCcceecCce----EcCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            466665543  3489999999999999999 9999999998642    1122234467778886666 59999999643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.97  E-value=4.2e-05  Score=63.19  Aligned_cols=59  Identities=10%  Similarity=0.045  Sum_probs=54.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIe  280 (292)
                      .+++..+.+.|+|++|+..++++|+++|.+   -.+|+++..+|..+|++++|+..|+++.+
T Consensus        71 ~~la~~~~~~g~~~~Al~~~~~al~~~P~~---e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          71 TAKAEAEIACGRASAVIAELEALTFEHPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            488999999999999999999999999984   34799999999999999999999999843

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=1.4e-05  Score=59.39  Aligned_cols=71  Identities=20%  Similarity=0.332  Sum_probs=53.4

Q ss_pred             ceeEEeeeCCC-CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCC-ceEEEEeeccCC
Q 022783           95 YGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVG-PLLMKMQKRYGK  171 (292)
Q Consensus        95 lGl~~~~~~~G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g-~v~l~l~r~~~~  171 (292)
                      ||+.+....+. |++|.+|.|++.|+++| |++||+|+.+-.   ..   .+.....+.+|+. ++| .+.|.+.|+-|+
T Consensus         5 LGv~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing---~~---i~~~~~~~~~i~~~~~g~~v~l~v~r~~g~   77 (88)
T d2z9ia1           5 LGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDD---RP---INSADALVAAVRSKAPGATVALTFQDPSGG   77 (88)
T ss_dssp             CCEEEECCC-CCSEEEEEECTTSTTGGGT-CCTTCEEEEETT---EE---CCSHHHHHHHHHTSCTTCEEEEEEEETTTE
T ss_pred             EeEEEEecCCCCcEEEEEECCCCHHHHcC-CCCCCEEEEeCC---Cc---CCcHHHHHHHHHhCCCCCEEEEEEEECCCC
Confidence            68888776554 99999999999999999 999999999763   22   2344455667764 444 679999997665


Q ss_pred             c
Q 022783          172 M  172 (292)
Q Consensus       172 ~  172 (292)
                      .
T Consensus        78 ~   78 (88)
T d2z9ia1          78 S   78 (88)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2e-05  Score=60.67  Aligned_cols=79  Identities=18%  Similarity=0.313  Sum_probs=56.7

Q ss_pred             ceEEEEecC----CceeEEeeeCC--CCeEEEEeCCCCCcccc-cCcccCCEEEEeccccCcccccccchhhHHHHhhc-
Q 022783           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKT-GMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-  156 (292)
Q Consensus        85 ~~~~v~l~K----PlGl~~~~~~~--G~v~V~~v~~ggnA~k~-g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-  156 (292)
                      +..+|+|.|    +||+.+.-+.|  .++||..|.|||-|+++ |.|++||.|+++-.    .-..-..+.+++..|+. 
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg----~~v~~~~~~e~~~ll~~~   83 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING----RDIAEHTHDQVVLFIKAS   83 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETT----BCTTSSCHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECC----EECCCCCHHHHHHHHHhC
Confidence            456788876    59999986643  37999999999999995 77999999999763    22333455577777773 


Q ss_pred             ---cCCceEEEEee
Q 022783          157 ---RVGPLLMKMQK  167 (292)
Q Consensus       157 ---r~g~v~l~l~r  167 (292)
                         ....|.|+..+
T Consensus        84 ~~~~~~~v~L~vrp   97 (106)
T d2cs5a1          84 CERHSGELMLLVRP   97 (106)
T ss_dssp             HHCCSSCEEEEEEC
T ss_pred             CCCCCcEEEEEECC
Confidence               23345555543

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=4.8e-06  Score=64.35  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=63.2

Q ss_pred             EEEEecCCceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEE
Q 022783           87 YEVEIEQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK  164 (292)
Q Consensus        87 ~~v~l~KPlGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~  164 (292)
                      +.+.=.+|+|+.+.-+.|.  ++||..|.|++-|++++ +++||+|+.+..    .-..-..+-++...|+.-..+|.|+
T Consensus         9 v~~~g~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg----~~v~~~~~~e~v~ll~~~~~~v~l~   83 (103)
T d1v5la_           9 VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDG----FGTESMTHADAQDRIKAASYQLCLK   83 (103)
T ss_dssp             CEEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETT----EECSSCCHHHHHHHHTTCCSEEECE
T ss_pred             EEEECCCCCCEEEEeecCCCCCEEEEEccCCChHHhCC-CCCCCEEEEECC----EECCCCCHHHHHHHHHcCCCEEEEE
Confidence            5567789999999988655  69999999999998776 999999999753    2223334447788899878899999


Q ss_pred             EeeccCC
Q 022783          165 MQKRYGK  171 (292)
Q Consensus       165 l~r~~~~  171 (292)
                      +.|....
T Consensus        84 V~R~~~~   90 (103)
T d1v5la_          84 IDRAETR   90 (103)
T ss_dssp             ECCCTTT
T ss_pred             EEECCcc
Confidence            9996543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=8.8e-06  Score=70.05  Aligned_cols=64  Identities=11%  Similarity=0.152  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCC---CccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSKP---TPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeldP---~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel  281 (292)
                      +.+.|+.+...++|++|+++|++|+++.+   +..+.+.+|.|+|.||..+|++++|++++++|+++
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~  106 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI  106 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH
Confidence            34778899999999999999999997632   22345778999999999999999999999999886

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.1e-05  Score=59.30  Aligned_cols=68  Identities=25%  Similarity=0.464  Sum_probs=51.6

Q ss_pred             EEEecCC-----ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783           88 EVEIEQP-----YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (292)
Q Consensus        88 ~v~l~KP-----lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~  162 (292)
                      .|.|.||     ||+.+..    + +|..|.|||-|+++| +++||+|+.+..    +-..-..+.+++..|++-.+.+.
T Consensus         3 tv~l~r~~~~~~lGf~i~~----g-~V~~V~~gs~A~~~g-L~~GD~Il~INg----~~v~~~~~~~~~~ll~~~~~~v~   72 (79)
T d1y7na1           3 TVLIRRPDLRYQLGFSVQN----G-IICSLMRGGIAERGG-VRVGHRIIEING----QSVVATPHEKIVHILSNAVGEIH   72 (79)
T ss_dssp             EEEEEESSTTSCCCEEEET----T-EEEEECTTSHHHHHT-CCSSCEEEEETT----EECTTSCHHHHHHHHHHCCEEEE
T ss_pred             EEEEEcCCCCCCcCEEEEC----C-EEEEEcCCCHHHHCC-CCCCCEEEEECC----EEeCCCCHHHHHHHHHcCCCEEE
Confidence            4455554     7877742    2 899999999999977 999999999764    33334466788899998888888


Q ss_pred             EEE
Q 022783          163 MKM  165 (292)
Q Consensus       163 l~l  165 (292)
                      |++
T Consensus        73 l~v   75 (79)
T d1y7na1          73 MKT   75 (79)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=3.5e-05  Score=66.58  Aligned_cols=104  Identities=6%  Similarity=-0.013  Sum_probs=74.8

Q ss_pred             HHHHhhccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCccchhHHHHH
Q 022783          183 IIRAERNSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYN  257 (292)
Q Consensus       183 ~~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~g--dYeeAIe~fekALeldP~~~d~a~a~YN  257 (292)
                      .+.++.+.+.+......+.++  .|.+.-...++... ++.+|..+...+  ++++|+..++++|+++|+.  ....+++
T Consensus        72 ~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~~  149 (334)
T d1dcea1          72 VLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN--FHCWDYR  149 (334)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchh--hhhhhhH
Confidence            345566777777777777665  44444443333333 357888887765  4899999999999999873  3334577


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783          258 VACCYSKLNQVKAGLSALEDALLAGYEDFKV  288 (292)
Q Consensus       258 ~AccyakLgq~eeALe~LekAIelG~~Df~~  288 (292)
                      .++++...+++++|+..++++|++...++..
T Consensus       150 ~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a  180 (334)
T d1dcea1         150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (334)
T ss_dssp             HHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHcCCCCHHH
Confidence            8899999999999999999999998876653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=4.5e-05  Score=62.97  Aligned_cols=69  Identities=17%  Similarity=0.187  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-------------------cchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP-------------------EESSVASYNVACCYSKLNQVKAGLSALED  277 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~-------------------~d~a~a~YN~AccyakLgq~eeALe~Lek  277 (292)
                      ..++.|..+...|++++|+..|.+||++.|..                   .....++.++|-++..+|++++|+.+|++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            34589999999999999999999999998753                   11235799999999999999999999999


Q ss_pred             HHHhCccC
Q 022783          278 ALLAGYED  285 (292)
Q Consensus       278 AIelG~~D  285 (292)
                      ++++...+
T Consensus        93 al~~~P~~  100 (179)
T d2ff4a2          93 LTFEHPYR  100 (179)
T ss_dssp             HHHHSTTC
T ss_pred             HHHhCCcc
Confidence            99997654

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.6e-05  Score=61.22  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=56.1

Q ss_pred             EEEEecC---CceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc---
Q 022783           87 YEVEIEQ---PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR---  157 (292)
Q Consensus        87 ~~v~l~K---PlGl~~~~~~~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r---  157 (292)
                      ..|+++|   +|||.+.-+.|   +.+||..|.|+|-|+++|.|++||+|+++-..    =..-..+-+++..|++-   
T Consensus         8 ~vv~~~k~~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~----~v~~~s~~e~~~~l~~a~~~   83 (103)
T d1ufxa_           8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGL----TLRGKEHREAARIIAEAFKT   83 (103)
T ss_dssp             EEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTE----ECTTCBHHHHHHHHHHHHHC
T ss_pred             EEEEEEeCCCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCE----ECCCCcHHHHHHHHHHccCC
Confidence            4567766   69999986533   36999999999999999999999999998642    22223455677777742   


Q ss_pred             --CCceEEEEeec
Q 022783          158 --VGPLLMKMQKR  168 (292)
Q Consensus       158 --~g~v~l~l~r~  168 (292)
                        -.++.|...+.
T Consensus        84 ~~~~~~~l~v~~~   96 (103)
T d1ufxa_          84 KDRDYIDFLVTEF   96 (103)
T ss_dssp             SSCSEEEEEECCC
T ss_pred             CccceEEEEEeCC
Confidence              25566666554

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.3e-05  Score=61.43  Aligned_cols=70  Identities=20%  Similarity=0.430  Sum_probs=53.3

Q ss_pred             CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783           94 PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus        94 PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      ++|+.+..+.+  .++||..|.++|-|+++| |++||.|+.+-.    .-......-+++..|+.. +.+.|.+.|+.
T Consensus        22 glG~~i~gg~~~~~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING----~~v~~~~~~~v~~ll~~~-~~~~l~V~~~~   93 (101)
T d1ueza_          22 GLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVND----KSLARVTHAEAVKALKGS-KKLVLSVYSAG   93 (101)
T ss_dssp             CSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETT----EECSSCCHHHHHHHSSSS-SSCCEEECCCC
T ss_pred             eeCEEEEecccCCCCEEEEEECCCChHHhcC-CCCCcEEEEECC----EECCCCCHHHHHHHHhcC-CCEEEEEEECC
Confidence            59999986533  389999999999999999 999999999763    222223445788899864 56777777654

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.8e-05  Score=57.60  Aligned_cols=73  Identities=10%  Similarity=0.129  Sum_probs=55.4

Q ss_pred             eEEEEecC----CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783           86 EYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (292)
Q Consensus        86 ~~~v~l~K----PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v  161 (292)
                      ..+|+|.|    ++|+.+.    | .+|..|.+||.|+++| +++||+|+.+..    +-..-....+++..|+.-.+.|
T Consensus         5 pr~V~l~k~~~g~~Gf~i~----~-g~V~~v~~g~~A~~~G-l~~GD~Il~INg----~~v~~~t~~~~~~ll~~~~~~v   74 (82)
T d1r6ja_           5 PRTITMHKDSTGHVGFIFK----N-GKITSIVKDSSAARNG-LLTEHNICEING----QNVIGLKDSQIADILSTSGTVV   74 (82)
T ss_dssp             CEEEEEECCTTSCCCEEEE----T-TEEEEECTTSHHHHHT-CCSSEEEEEETT----EECTTCCHHHHHHHHHHSCSEE
T ss_pred             CEEEEEEeCCCCCcCEEEE----E-EEEEEECCCChHHhcC-cCCCCEEEEeCC----eEEeeCCHHHHHHHHHcCCCEE
Confidence            35788877    5787774    2 2799999999999999 999999999763    2223334557888999878888


Q ss_pred             EEEEeec
Q 022783          162 LMKMQKR  168 (292)
Q Consensus       162 ~l~l~r~  168 (292)
                      .|++--.
T Consensus        75 ~l~v~p~   81 (82)
T d1r6ja_          75 TITIMPA   81 (82)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            8887543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=2.6e-05  Score=63.88  Aligned_cols=65  Identities=14%  Similarity=0.004  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCC---CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783          218 DLREGLQLYRTGKYEVAREKFESVLGSK---PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (292)
Q Consensus       218 ~~n~G~~L~k~gdYeeAIe~fekALeld---P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG  282 (292)
                      ..++|..+...|+|++|+..|++++...   ....+...+|+++|-+|..+|++++|++.+++|+++.
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            4578999999999999999999998432   1222456789999999999999999999999999874

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=6.6e-05  Score=60.29  Aligned_cols=70  Identities=6%  Similarity=0.071  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783          216 EQDLREGLQLYRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (292)
Q Consensus       216 ~~~~n~G~~L~k~---gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~  287 (292)
                      ...|+-|..|.+.   .+.++||..+++++..+|.  .....|||+|.+|.++|+|++|+.+++++|++.+++..
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~--~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q  108 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  108 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence            4568899999766   4557999999999988885  34568999999999999999999999999999887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.73  E-value=2.8e-05  Score=68.35  Aligned_cols=61  Identities=10%  Similarity=-0.032  Sum_probs=54.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (292)
Q Consensus       222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D  285 (292)
                      +..+++.|++++|+..|+++++.+|++   ..++++++.+|..+|++++|+..|++|+++..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d---~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~   63 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKD---ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   63 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Confidence            345678899999999999999999984   5679999999999999999999999999997664

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=9.2e-06  Score=60.53  Aligned_cols=60  Identities=15%  Similarity=0.336  Sum_probs=49.7

Q ss_pred             CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783          103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       103 ~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      .+.|++|..|.|++.|+++| |++||+|+.+-.      ++..++.+...+++...+.+.|++.|.-
T Consensus        23 ~~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing------~~v~~~~~~~~~l~~~~~~v~l~v~R~~   82 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQ------QAVKNIAELRKVLDSKPSVLALNIQRGD   82 (88)
T ss_dssp             TTSCCCBCCCCSSCTTGGGT-CCSSCEEEEETT------EECSSHHHHHHHTTTCCSCCCEEEESSS
T ss_pred             CCCeEEEEEECCCCHHHHcC-CCCCcEEEEECC------EEcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence            44589999999999999999 999999999762      3456677777888877788999999853

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=3.7e-05  Score=59.79  Aligned_cols=70  Identities=14%  Similarity=0.129  Sum_probs=52.6

Q ss_pred             CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC-CceEEEEeecc
Q 022783           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRY  169 (292)
Q Consensus        93 KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~-g~v~l~l~r~~  169 (292)
                      ..+|+.+.  .+.++||..|.|+|-|+++| |++||+|+.+-.    +-..-....+++..|+... ..|.|++.++.
T Consensus        26 ~g~Gf~i~--g~~~v~V~~V~~~spA~~~G-L~~GD~Il~INg----~~v~~~~~~ev~~llk~~~~~~v~l~v~~~~   96 (111)
T d1vaea_          26 GDLGFTLR--GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQG----VDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL   96 (111)
T ss_dssp             SCCSCCEE--SSSSCEECCCCTTSSHHHHH-CCTTCEEEEETT----EECSSCCHHHHHHHHHHTTTSEECEEEECEE
T ss_pred             CccCEEEE--CCccEEEEEEcCCChHHhcc-cCcccEEEEECC----EEcCCCCHHHHHHHHHcCCCCeEEEEEECCC
Confidence            45777774  35579999999999999999 999999999764    2223335567889998654 45788777654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.46  E-value=0.00022  Score=59.18  Aligned_cols=76  Identities=9%  Similarity=0.099  Sum_probs=61.1

Q ss_pred             hHHHHHhhHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCCHHHHHHHHH
Q 022783          205 YMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALE  276 (292)
Q Consensus       205 Y~kkk~lk~~~~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq~eeALe~Le  276 (292)
                      +.+...........+++|..++.    .+++++|+.+|+++.+...     ..++||+|.+|..    ..++++|++.++
T Consensus       168 ~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-----~~a~~~LG~~y~~G~g~~~n~~~A~~~~~  242 (265)
T d1ouva_         168 SYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----GGGCFNLGAMQYNGEGVTRNEKQAIENFK  242 (265)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred             hhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC-----HHHHHHHHHHHHcCCCCccCHHHHHHHHH
Confidence            33333333345567899999987    7899999999999999864     4589999999987    458999999999


Q ss_pred             HHHHhCccC
Q 022783          277 DALLAGYED  285 (292)
Q Consensus       277 kAIelG~~D  285 (292)
                      +|.+.|..+
T Consensus       243 kAa~~g~~~  251 (265)
T d1ouva_         243 KGCKLGAKG  251 (265)
T ss_dssp             HHHHHTCHH
T ss_pred             HHHHCcCHH
Confidence            999999763

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.41  E-value=0.00033  Score=58.04  Aligned_cols=62  Identities=19%  Similarity=0.284  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCc
Q 022783          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq~eeALe~LekAIelG~  283 (292)
                      .++++|..+++.+||++|+++|++|.+.+.     ..++||+|.+|..    ..++..|+..++++.+.|+
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-----~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~   69 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLKE-----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY   69 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc
Confidence            445666666666666666666666655432     2346666666554    4455666666666655553

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00022  Score=53.39  Aligned_cols=58  Identities=19%  Similarity=0.344  Sum_probs=45.7

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (292)
Q Consensus       104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~  169 (292)
                      +.|++|.+|.|++.|+++| |++||+|+.+-.   .   +.....+.+.+|+ ...++.+.+.|.-
T Consensus        30 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing---~---~V~s~~dl~~~l~-~g~~v~l~v~R~g   87 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGE---Q---MVQNAEDVYEAVR-TQSQLAVQIRRGR   87 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETT---E---ECCSHHHHHHHHT-TCSSEEEEEEETT
T ss_pred             CCcEEEEEECCCchHhhcC-CCCCcEEEEECC---E---EcCCHHHHHHHhc-CCCEEEEEEEECC
Confidence            4589999999999999999 999999999753   2   3344556677776 3567899999854

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=9.1e-05  Score=63.85  Aligned_cols=62  Identities=5%  Similarity=-0.181  Sum_probs=56.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                      ..|..+...+++++|+..|.+++..+|+   ...+|+++|-||..+|++++|+++|++|+++.+.
T Consensus       247 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~  308 (334)
T d1dcea1         247 LSVEKSTVLQSELESCKELQELEPENKW---CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  308 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhCch---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence            5678888899999999999999999996   4578999999999999999999999999999875

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00081  Score=50.48  Aligned_cols=79  Identities=10%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             ceEEEEecC---CceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CC
Q 022783           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG  159 (292)
Q Consensus        85 ~~~~v~l~K---PlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g  159 (292)
                      +.++|+|.|   .||+.+..+.++..++..+.    ++..+.+++||+|++|-.    +-..-...-+++..||.-  ..
T Consensus        10 e~~~v~l~k~~~glGf~i~g~~~~~~~~~~~~----~~~~~~L~~GD~Il~VNg----~~v~~~t~~evv~~lk~~~~g~   81 (96)
T d1ujva_          10 ELMTLTIVKGAQGFGFTIADSPTGQRVKQILD----IQGCPGLCEGDLIVEINQ----QNVQNLSHTEVVDILKDCPIGS   81 (96)
T ss_dssp             CCEEEEEECCSSSSSEEEEEETTEEEEEEESC----GGGSTTCCSSCEEEEETT----EECSSCCHHHHHHHHHHSCTTS
T ss_pred             eEEEEEEEeCCCcccEEEEeeCCCceEeeccC----cccccCCCCCCEEEEECC----EECCCCCHHHHHHHHHcCCCCC
Confidence            557888876   47899988777665555544    444456999999999763    333344566888999953  35


Q ss_pred             ceEEEEeeccCC
Q 022783          160 PLLMKMQKRYGK  171 (292)
Q Consensus       160 ~v~l~l~r~~~~  171 (292)
                      .|.|.+.|+.++
T Consensus        82 ~v~l~v~R~~~P   93 (96)
T d1ujva_          82 ETSLIIHRGSGP   93 (96)
T ss_dssp             EEEEEEECCSSC
T ss_pred             EEEEEEEECCCC
Confidence            789999998775

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.0015  Score=50.12  Aligned_cols=77  Identities=14%  Similarity=0.084  Sum_probs=61.5

Q ss_pred             hhHHHHHhhHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCCHHHHHHHH
Q 022783          204 NYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSAL  275 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq~eeALe~L  275 (292)
                      .++++..........+++|..+..    ..++++|+++|+++.+...     ..+.++++.+|..    ..++++|+..+
T Consensus        44 ~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-----~~a~~~Lg~~y~~G~gv~~d~~~A~~~~  118 (133)
T d1klxa_          44 QYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND-----QDGCLILGYKQYAGKGVVKNEKQAVKTF  118 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc-----chHHHHHHHHHHcCCccCCCHHHHHHHH
Confidence            344444444445667899999876    6789999999999998764     3579999999987    56899999999


Q ss_pred             HHHHHhCccC
Q 022783          276 EDALLAGYED  285 (292)
Q Consensus       276 ekAIelG~~D  285 (292)
                      ++|.++|+.+
T Consensus       119 ~~Aa~~G~~~  128 (133)
T d1klxa_         119 EKACRLGSED  128 (133)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHCCCHH
Confidence            9999999753

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.10  E-value=0.00097  Score=58.14  Aligned_cols=94  Identities=11%  Similarity=-0.036  Sum_probs=71.6

Q ss_pred             HhhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc----------------
Q 022783          186 AERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP----------------  248 (292)
Q Consensus       186 a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~----------------  248 (292)
                      .....|.+..++.     .|.+.-+.++.. .-..++|..|...|+|++|+..|+++++++|+.                
T Consensus         5 ~aL~~G~l~eAl~-----~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           5 NALSEGQLQQALE-----LLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHTTTTCHHHHHH-----HHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHH-----HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence            3444566555433     444444445444 445699999999999999999999999999984                


Q ss_pred             ----------------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783          249 ----------------EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (292)
Q Consensus       249 ----------------~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~  284 (292)
                                      ++....+.+.|.++...|++++|++.+++|+++-..
T Consensus        80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence                            112356788899999999999999999999998654

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.98  E-value=0.0012  Score=49.38  Aligned_cols=70  Identities=7%  Similarity=0.049  Sum_probs=52.4

Q ss_pred             ceeEEeeeCCCCeEEEEeCCC--------CCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-CCceEEEE
Q 022783           95 YGLKFAKGRDGGTYIDAIAPG--------GSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKM  165 (292)
Q Consensus        95 lGl~~~~~~~G~v~V~~v~~g--------gnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g~v~l~l  165 (292)
                      ||+.|.-. ++++.|..|-+|        +-|+++|..++||+|+++-.      ++....-.+...|+.+ ..+|.|++
T Consensus         3 lG~d~~~~-~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG------~~v~~~~~~~~~l~g~~G~~V~L~i   75 (91)
T d1k32a1           3 IACDFKLD-GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDG------ETVGAGSNIYRVLSEKAGTSARIRL   75 (91)
T ss_dssp             CSEEEEEE-TTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETT------EECBTTBCHHHHHHTTTTSEEEEEE
T ss_pred             ccEEEEEE-CCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECC------EeecCcceeEEEEecCCCCEEEEEE
Confidence            68888875 677889999988        88999994489999999863      2333444566777755 45679999


Q ss_pred             eeccCC
Q 022783          166 QKRYGK  171 (292)
Q Consensus       166 ~r~~~~  171 (292)
                      .|.-+.
T Consensus        76 ~R~g~~   81 (91)
T d1k32a1          76 SGKGGD   81 (91)
T ss_dssp             ECSSSC
T ss_pred             EeCCCC
Confidence            996554

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00032  Score=52.36  Aligned_cols=57  Identities=19%  Similarity=0.441  Sum_probs=44.7

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cC-CceEEEEeec
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQKR  168 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~-g~v~l~l~r~  168 (292)
                      .|++|.+|.|++.|+++| +++||+|+.+..   .   +..++...+..|.. ++ ..+.|++.|.
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g---~---~v~~~~~l~~~l~~~~~g~~v~l~v~R~   85 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNG---K---PISSFAALRAQVGTMPVGSKLTLGLLRD   85 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSS---S---BCCSSHHHHHHTTSSBTTCCCEEEEESS
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECC---E---EeCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            489999999999999999 999999999753   2   45555566667763 44 4579999985

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00029  Score=53.18  Aligned_cols=60  Identities=23%  Similarity=0.382  Sum_probs=41.3

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh-ccCC-ceEEEEeeccCC
Q 022783          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR-QRVG-PLLMKMQKRYGK  171 (292)
Q Consensus       105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~-~r~g-~v~l~l~r~~~~  171 (292)
                      -|++|.+|.+++.|+++| |++||+|+.+..      .+..+..+.+..|. .++| .+.|++.|.--.
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing------~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~   87 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDN------KPAISALETMDQVAEIRPGSVIPVVVMRDDKQ   87 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSS------SBCCCSHHHHHHHHHSCTTCEEEECC-----C
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECC------EecccHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            489999999999999999 999999998653      24445556666664 4444 478888885433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0011  Score=61.52  Aligned_cols=82  Identities=12%  Similarity=-0.014  Sum_probs=66.6

Q ss_pred             HHHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHH
Q 022783          183 IIRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (292)
Q Consensus       183 ~~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~A  259 (292)
                      -++++.+.|++.....+.+++  .|.++..+.+.. ..+.++|+++...|++.+|+.+|.+||.++|.+   ..++.|++
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~---~~a~~nL~  227 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF---PAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC---HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHH
Confidence            367899999999888888886  566666655554 455699999999999999999999999999874   56799999


Q ss_pred             HHHHhcCC
Q 022783          260 CCYSKLNQ  267 (292)
Q Consensus       260 ccyakLgq  267 (292)
                      ..+.+..+
T Consensus       228 ~~~~~~~~  235 (497)
T d1ya0a1         228 KALSKALE  235 (497)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhh
Confidence            88876553

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.32  E-value=0.003  Score=47.82  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=43.8

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCCc-eEEEEeecc
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVGP-LLMKMQKRY  169 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g~-v~l~l~r~~  169 (292)
                      ||+|.+|.+++.|++ + |++||+|+.+..   .   +...+.+.+.+|+. ++|. |.|.++|.-
T Consensus         4 Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing---~---~v~~~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           4 GVQIDSVVPGSPASK-V-LTPGLVIESING---M---PTSNLTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CEEEEEECSSSGGGG-T-SCTTCEEEEETT---E---ECSSHHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             cEEEEEECCCChHHh-c-CCCCCEEEEECC---E---EcCCHHHHHHHHhhCCCCCEEEEEEEECC
Confidence            699999999999986 6 999999999763   2   23456677888886 4454 789998853

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.018  Score=48.87  Aligned_cols=66  Identities=11%  Similarity=0.067  Sum_probs=48.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (292)
Q Consensus       219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df  286 (292)
                      +..+..+...|++++|...|+++|+.+|.  +...+|...+-+....|+++.|.+.+++|++.+..+.
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~~--~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~  168 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAIEDI--DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Confidence            45666677778888888888888887776  2344577777777777888888888888887776544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.009  Score=47.42  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~  248 (292)
                      ++-.+++|+.++++|+|++|+.+++++|+++|++
T Consensus        73 rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          73 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            3445799999999999999999999999999986

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.72  E-value=0.024  Score=42.96  Aligned_cols=74  Identities=7%  Similarity=-0.099  Sum_probs=54.0

Q ss_pred             hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 022783          204 NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDAL  279 (292)
Q Consensus       204 ~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak----Lgq~eeALe~LekAI  279 (292)
                      .|+++..........+++|.  ....++++|++.|+++.+.+-     ..++|++|.+|..    ..++++|++.+++|.
T Consensus        14 ~~~~kaa~~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~-----~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa   86 (133)
T d1klxa_          14 QYYVKACELNEMFGCLSLVS--NSQINKQKLFQYLSKACELNS-----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC   86 (133)
T ss_dssp             HHHHHHHHTTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCChhhhhhhcc--ccccCHHHHHHHHhhhhcccc-----hhhhhhHHHhhhhccccchhhHHHHHHHhhhh
Confidence            44444433333334455553  345789999999999998753     4579999999986    567899999999999


Q ss_pred             HhCcc
Q 022783          280 LAGYE  284 (292)
Q Consensus       280 elG~~  284 (292)
                      +.|..
T Consensus        87 ~~g~~   91 (133)
T d1klxa_          87 GLNDQ   91 (133)
T ss_dssp             HTTCH
T ss_pred             ccCcc
Confidence            99854

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=94.42  E-value=0.02  Score=41.84  Aligned_cols=56  Identities=11%  Similarity=0.116  Sum_probs=42.6

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeec
Q 022783          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (292)
Q Consensus       106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~  168 (292)
                      |.+|..+.+++-|+++| +++||+|+++-.      -+..+....+..++. + ..++.+.+.|.
T Consensus        20 G~~v~~v~~~s~~~~aG-l~~GDiI~~ing------~~v~~~~~~~~~~~~~~~~~~~~l~v~R~   77 (87)
T d2i6va1          20 GYRVSPGKDPVLFESIG-LQDGDMAVALNG------LDLTDPNVMNTLFQSMNEMTEMSLTVERD   77 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETT------EETTCHHHHHHHHHTGGGCSEEEEEEEET
T ss_pred             EEEEecCCCCCHHHHCC-CCCCCEEEEECC------EEeecHHHHHHHHHhhccccccEEEEEEC
Confidence            88899999999999999 999999999763      233445555666653 3 44588999984

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.085  Score=44.46  Aligned_cols=64  Identities=20%  Similarity=0.075  Sum_probs=47.5

Q ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783          217 QDLREGLQLY-RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (292)
Q Consensus       217 ~~~n~G~~L~-k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~  283 (292)
                      .++..|...+ ..|+++.|..+|++++..+|++   ..+|-..+-.+..+|+++.|...+++||+...
T Consensus       170 ~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~---~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            3446665543 4578888888888888888863   34577778888888888888888888888653

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.76  E-value=0.6  Score=34.27  Aligned_cols=28  Identities=14%  Similarity=0.238  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          216 EQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       216 ~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      -+.+.+|+.+-+.|+|++|+.+|.+||+
T Consensus        16 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          16 VAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456889999999999999999999974

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=83.31  E-value=4  Score=32.32  Aligned_cols=68  Identities=15%  Similarity=0.199  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-ccch----hHHHHHHHHHH-HhcCCHHHHHHHHHHHHHh
Q 022783          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPT-PEES----SVASYNVACCY-SKLNQVKAGLSALEDALLA  281 (292)
Q Consensus       214 ~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~-~~d~----a~a~YN~Accy-akLgq~eeALe~LekAIel  281 (292)
                      ..+.+|..|+.||..|+|=+|-+.++......+. .++.    +.+..=.|+.+ ...|+..-|...+.+|+..
T Consensus        16 t~~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al~~   89 (145)
T d2ijqa1          16 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY   89 (145)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3457789999999999999999999999965433 2222    33344455563 7889999999999999765

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.42  E-value=0.98  Score=31.81  Aligned_cols=29  Identities=17%  Similarity=0.201  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783          215 REQDLREGLQLYRTGKYEVAREKFESVLG  243 (292)
Q Consensus       215 ~~~~~n~G~~L~k~gdYeeAIe~fekALe  243 (292)
                      +.+.++.|+.+-+.|+|++|+.+|.+|++
T Consensus        11 A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~   39 (77)
T d1wr0a1          11 AIDLASKAAQEDKAGNYEEALQLYQHAVQ   39 (77)
T ss_dssp             HHHHHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44567889999999999999999999885