Citrus Sinensis ID: 022787

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--

MSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL

cccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHccEEcccccccEEEEcccccccccccccccccHHHEEEccccccc

cccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHcccEEEccccccEEEEcccccccccccccccEEEEEEEEcccEEEc

msakevrasdvrplpvLEETLNYLLSLldstehpfevIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVIShhklrsscssssisplhyLNLEQLTKALTSLYNLyeanrsskpihekeaEFRSFYVLLHldsngqpvgeSLSLWFrhvpspiiksKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCcihnccyklhpyplghlskVLMMEESDVELFCNAYGLQTCIDevgnkllptkqttfcrpkgglqnysflgFQQLGRQIEL

msakevrasdvrplpvLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFcrpkgglqnysflgfqqlgrqiel

MSAKEVRASDVRPLPVleetlnyllslldsteHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRsscssssisPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL

*************LPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEAN*********EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQL******

*SAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLP*****************FLGFQQLGR****

**********VRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISH***********ISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL

*****VRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIE*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		292	2.2.26 [Sep-21-2011]
O60318		1980	80 kDa MCM3-associated pr	yes	no	0.849	0.125	0.287	5e-21
Q9WUU9		1971	80 kDa MCM3-associated pr	yes	no	0.849	0.125	0.287	1e-20
O74889		1024	SAC3 family protein 1 OS=	yes	no	0.804	0.229	0.303	1e-18
Q9USI4		458	SAC3 family protein 2 OS=	no	no	0.863	0.550	0.299	7e-16
Q9U3V9		1370	Protein xmas-2 OS=Drosoph	yes	no	0.832	0.177	0.293	7e-14
P46674		1301	Nuclear mRNA export prote	yes	no	0.791	0.177	0.282	1e-12

>sp\|O60318\|MCM3A_HUMAN 80 kDa MCM3-associated protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2	Back alignment and function desciption

 Score =  102 bits (253), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 135/271 (49%), Gaps = 23/271 (8%)

Query: 10  DVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFE 68
           ++RPLPVL  T++YL++ ++D  E      +DFV++RTR +R+D+  Q++ +   +++ E
Sbjct: 690 ELRPLPVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIE 749

Query: 69  KIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEF 128
           K  +FH+   H +   C     S    +N E +TK L SL  +Y+  R+       EAEF
Sbjct: 750 KCTRFHIHCAHFM---CEEPMSSFDAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAEF 806

Query: 129 RSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVA 188
           + + VLL L+      G+ L    +  P+ +  S E+ FA QA       N+ RF   V 
Sbjct: 807 QGYNVLLSLNK-----GDILREVQQFHPA-VRNSSEVKFAVQAFAALNSNNFVRFFKLVQ 860

Query: 189 AEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMMEE-SDVEL 242
           + ASYL  C++  Y  ++R  AL  + N  Y +       +PL  + ++L+  +  +   
Sbjct: 861 S-ASYLNACLLHCYFSQIRKDALRAL-NFAYTVSTQRSTIFPLDGVVRMLLFRDCEEATD 918

Query: 243 FCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 273
           F   +GL      V +  +   ++ F  P+G
Sbjct: 919 FLTCHGLT-----VSDGCVELNRSAFLEPEG 944

May be involved in the nuclear localization pathway of MCM3.
Homo sapiens (taxid: 9606)

>sp\|Q9WUU9\|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2	Back alignment and function description

>sp\|O74889\|SAC31_SCHPO SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.05 PE=1 SV=1	Back alignment and function description

>sp\|Q9USI4\|SAC32_SCHPO SAC3 family protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC70.06 PE=3 SV=1	Back alignment and function description

>sp\|Q9U3V9\|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster GN=xmas-2 PE=1 SV=3	Back alignment and function description

>sp\|P46674\|SAC3_YEAST Nuclear mRNA export protein SAC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAC3 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		292
224057204		357	predicted protein [Populus trichocarpa]	0.979	0.801	0.713	1e-117
255569219		440	leng8 protein, putative [Ricinus communi	0.986	0.654	0.677	1e-113
357515593		403	80 kDa MCM3-associated protein [Medicago	0.986	0.714	0.684	1e-110
388497576		403	unknown [Medicago truncatula]	0.986	0.714	0.670	1e-107
296084674		421	unnamed protein product [Vitis vinifera]	0.979	0.679	0.664	1e-106
298205116		424	unnamed protein product [Vitis vinifera]	0.979	0.674	0.667	1e-106
225449759		407	PREDICTED: SAC3 family protein 1-like [V	0.979	0.702	0.664	1e-106
359494990		407	PREDICTED: LOW QUALITY PROTEIN: SAC3 fam	0.979	0.702	0.667	1e-106
359494933		407	PREDICTED: SAC3 family protein 1-like [V	0.979	0.702	0.667	1e-106
356548802		405	PREDICTED: 80 kDa MCM3-associated protei	0.986	0.711	0.656	1e-105

>gi\|224057204\|ref\|XP_002299171.1\| predicted protein [Populus trichocarpa] gi\|222846429\|gb\|EEE83976.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/286 (71%), Positives = 244/286 (85%)

Query: 1   MSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVN 60
           +SAK ++ASDVRPLPVLE+TL YLL+LLDST+HPFEV+HDF+FDRTRS+RQDL MQNIV+
Sbjct: 71  ISAKHMQASDVRPLPVLEDTLAYLLNLLDSTDHPFEVVHDFIFDRTRSIRQDLSMQNIVD 130

Query: 61  DKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKP 120
           DK+I M+EK+VKFHVISH KL+   SSS IS +HYLN+EQLTKALTSLYNLY+ANR S  
Sbjct: 131 DKSIYMYEKMVKFHVISHLKLQRCRSSSDISSVHYLNMEQLTKALTSLYNLYDANRDSGT 190

Query: 121 IHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNY 180
           ++  EAEFRS YVLLHLDSN QP+GESLSLWFR V  PII+SKEM FAR  LR++QMGNY
Sbjct: 191 VYGNEAEFRSLYVLLHLDSNTQPMGESLSLWFRFVLHPIIRSKEMCFARSVLRFYQMGNY 250

Query: 181 RRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDV 240
            RF ST++AEASYLQYCI+E YI++VR+L+L  I+N  YKLHPYPL HLSK+L M+ESD+
Sbjct: 251 MRFFSTISAEASYLQYCILERYINKVRALSLSYINNAGYKLHPYPLVHLSKLLKMKESDL 310

Query: 241 ELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQL 286
           E+ CNA GL+TC D++GNKLLPTKQTTFC PK G Q+Y F G +Q 
Sbjct: 311 EVLCNACGLETCADDMGNKLLPTKQTTFCCPKEGFQSYIFTGLEQF 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255569219\|ref\|XP_002525578.1\| leng8 protein, putative [Ricinus communis] gi\|223535157\|gb\|EEF36837.1\| leng8 protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|357515593\|ref\|XP_003628085.1\| 80 kDa MCM3-associated protein [Medicago truncatula] gi\|355522107\|gb\|AET02561.1\| 80 kDa MCM3-associated protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388497576\|gb\|AFK36854.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|296084674\|emb\|CBI25811.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|298205116\|emb\|CBI40637.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225449759\|ref\|XP_002269431.1\| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359494990\|ref\|XP_003634893.1\| PREDICTED: LOW QUALITY PROTEIN: SAC3 family protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359494933\|ref\|XP_003634875.1\| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356548802\|ref\|XP_003542788.1\| PREDICTED: 80 kDa MCM3-associated protein-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		292
TAIR\|locus:2096189		406	SAC3C "AT3G54380" [Arabidopsis	0.989	0.711	0.506	1.7e-75
TAIR\|locus:2082485		1697	SAC3B "AT3G06290" [Arabidopsis	0.835	0.143	0.296	1.2e-24
UNIPROTKB\|F1NVG3		1659	MCM3AP "Uncharacterized protei	0.678	0.119	0.319	2.3e-18
ZFIN\|ZDB-GENE-040715-1		2118	mcm3ap "MCM3 minichromosome ma	0.678	0.093	0.305	4.5e-17
MGI\|MGI:1930089		1971	Mcm3ap "minichromosome mainten	0.75	0.111	0.278	2.3e-16
RGD\|1306834		1908	Mcm3ap "minichromosome mainten	0.75	0.114	0.273	4.6e-16
UNIPROTKB\|E1BJE7		1979	MCM3AP "Uncharacterized protei	0.75	0.110	0.269	6.2e-16
UNIPROTKB\|I3LCF4		1990	MCM3AP "Uncharacterized protei	0.743	0.109	0.288	6.2e-16
UNIPROTKB\|O60318		1980	MCM3AP "80 kDa MCM3-associated	0.849	0.125	0.258	2.1e-15
WB\|WBGene00017642		1116	F20D12.2 [Caenorhabditis elega	0.688	0.180	0.291	9.4e-15

TAIR\|locus:2096189 SAC3C "AT3G54380" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 147/290 (50%), Positives = 198/290 (68%)

Query:     1 MSAKEVRASDVRPLPVXXXXXXXXXXXXXXXXHPFEVIHDFVFDRTRSVRQDLIMQNIVN 60
             +SA +V+ASDVRPLPV                HPFEV+HDF+FDRTRS+RQDL +QN+ N
Sbjct:   118 LSAADVQASDVRPLPVLEETLRYLLSLLDSKEHPFEVVHDFIFDRTRSIRQDLSIQNLAN 177

Query:    61 DKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKP 120
             ++ I ++E++VKFHVISH +L+          +H+LN+EQL K LTSLYN+Y+ANR    
Sbjct:   178 ERVIYLYEEMVKFHVISHERLQSCSGTSISS-MHHLNMEQLAKTLTSLYNIYDANRKPDY 236

Query:   121 IHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNY 180
             I+E EAEFRS YVLLHL+ +   +GE LSLWFR +   ++KSKE+ F R  LR ++MGNY
Sbjct:   237 IYENEAEFRSLYVLLHLNPSSGVMGEPLSLWFRKLTFALVKSKEICFVRNLLRLYRMGNY 296

Query:   181 RRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDV 240
             + FLS  A+EA+YLQYCI E +I E+R +A+  I+N CYKL PYPL  LS+ L M+E DV
Sbjct:   297 KNFLSRTASEATYLQYCISEHHIREMRLVAVQYINNVCYKLQPYPLLRLSQNLKMKELDV 356

Query:   241 ELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQI 290
             E  C+  GL+TC D  G  +LP KQ+TF  P+   + Y  +G +++   I
Sbjct:   357 ESLCHECGLETCTDPDGFTVLPVKQSTFRSPEDKFKVYDLIGIERIKMSI 406

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR\|locus:2082485 SAC3B "AT3G06290" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NVG3 MCM3AP "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040715-1 mcm3ap "MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1930089 Mcm3ap "minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1306834 Mcm3ap "minichromosome maintenance complex component 3 associated protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BJE7 MCM3AP "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LCF4 MCM3AP "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|O60318 MCM3AP "80 kDa MCM3-associated protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

WB\|WBGene00017642 F20D12.2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.6900.1	hypothetical protein (357 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		292
COG5079		646	COG5079, SAC3, Nuclear protein export factor [Intr	4e-30
pfam03399		155	pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p2	2e-11

>gnl\|CDD\|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]	Back alignment and domain information

 Score =  118 bits (298), Expect = 4e-30
 Identities = 83/268 (30%), Positives = 119/268 (44%), Gaps = 33/268 (12%)

Query: 9   SDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFE 68
           SDVRP  VL +T++YL+ L          +H FV DRTR+VRQD  +QN     A+   E
Sbjct: 129 SDVRPPEVLVKTIDYLVKLCAG--DQLIEMHRFVRDRTRAVRQDFTIQNEKGKDAVECHE 186

Query: 69  KIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEF 128
           +I +FH++  H L      S         LEQL K+L SL  LY+  R+ K     EAEF
Sbjct: 187 RIARFHILFLHLLHDHPHFSK-----QQELEQLKKSLASLIELYDDGRAGKKECPNEAEF 241

Query: 129 RSFYVLLHLDSNGQP-VGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYR------ 181
           R++ +L  L   G P     +  W    P  I     +  A + ++  Q  N+R      
Sbjct: 242 RAYAILASL---GDPRYVAGIQGW----PGGIFCDLPVQIALKLMQLAQSNNFRLLGRRN 294

Query: 182 ---------RFLSTVAAEA-SYLQYCIIEPYIDEVRSLALCCIHNCCYKLH-PYPLGHLS 230
                    RF   + + +  YL  C++E +   +R  AL  +       H   P   LS
Sbjct: 295 TEACFNLYTRFFKLIQSPSVQYLMGCLLEKHNISIRGGALKAMEKEIESAHKNIPFVDLS 354

Query: 231 KVLMMEESD-VELFCNAYGLQTCIDEVG 257
            +L  EE    E FC  YGL+  I++  
Sbjct: 355 GILDFEEKGEGEEFCKYYGLEIRIEDSV 382

Length = 646

>gnl\|CDD\|217534 pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p25 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		292
KOG1860		927	consensus Nuclear protein export factor [Intracell	100.0
COG5079		646	SAC3 Nuclear protein export factor [Intracellular	100.0
PF03399		204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	100.0
KOG1861		540	consensus Leucine permease transcriptional regulat	100.0
PF10075		143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	99.28
KOG3151		260	consensus 26S proteasome regulatory complex, subun	98.39
KOG4414		197	consensus COP9 signalosome, subunit CSN8 [Posttran	98.16
PF01399		105	PCI: PCI domain; InterPro: IPR000717 A homology do	96.58
KOG3252		217	consensus Uncharacterized conserved protein [Funct	96.3
KOG1464		440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.46
smart00753		88	PAM PCI/PINT associated module.	89.17
smart00088		88	PINT motif in proteasome subunits, Int-6, Nip-1 an	89.17
KOG2908		380	consensus 26S proteasome regulatory complex, subun	88.61
KOG0687		393	consensus 26S proteasome regulatory complex, subun	86.05
COG5187		412	RPN7 26S proteasome regulatory complex component,	84.31

>KOG1860 consensus Nuclear protein export factor [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=2.8e-51  Score=407.61  Aligned_cols=243  Identities=35%  Similarity=0.595  Sum_probs=216.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH-HHcCCCCChhhHHHhhhhhHHHHHhhhhhhhcCChhhHHHHHHHHHHHHHHHhhhhh
Q 022787            5 EVRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRS   83 (292)
Q Consensus         5 ~~~P~~vRP~~vL~kT~~yL~~-~~~~~~~~~~~~y~Fi~DRlRaIRQDltvQ~i~~~~~i~v~E~~~Rf~i~~~~~l~~   83 (292)
                      .|.|++||||+||.+||+||+. ++...+.++..+|+|+|||+||||||+|+||+.+..||.++|+|+||||++.|+||+
T Consensus       157 ~pLPsdvRP~~VL~~T~dYLl~~v~~~~~~sl~~~y~FvwDRtRAVR~D~t~Q~~~d~~Av~llE~i~RfhI~~~h~Lce  236 (927)
T KOG1860|consen  157 RPLPSDVRPPPVLVKTVDYLLGKVLCDKDISLREMYDFVWDRTRAVRQDFTIQNYSDQEAVELLERIARFHILFRHRLCE  236 (927)
T ss_pred             CCCccccCCHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc
Confidence            5699999999999999999997 445566689999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHhhhCChhhhcCH
Q 022787           84 SCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK  163 (292)
Q Consensus        84 ~~~~~~f~~~~~~n~~ql~qcl~~L~~lY~~~~~~~~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~sp  163 (292)
                      .+  +.|  +.++|+|||++|+.+|.++|++++++|++|+||+||+||++|++|++++.  .+..    +.+|+++++++
T Consensus       237 ~~--~~F--da~~nlEQL~K~l~sL~elYdD~r~~g~~cpnE~EFR~Y~vLl~Lgd~~~--~~~i----q~~~~evr~~~  306 (927)
T KOG1860|consen  237 EP--EQF--DAQQNLEQLQKCLQSLGELYDDLRKGGIPCPNEPEFRGYYVLLSLGDPQV--VRDI----QAWPDEVRQDS  306 (927)
T ss_pred             Cc--ccC--ChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhcCCchH--HHHH----HhcCcccccch
Confidence            64  356  47899999999999999999999999999999999999999999998762  3223    45699999999


Q ss_pred             hHHHHHHHHHHHHhCcHHHHHH------------------HHHh-cchHHHHHHHhhhHHHHHHHHHHHHHhhhcC--CC
Q 022787          164 EMWFARQALRYFQMGNYRRFLS------------------TVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYK--LH  222 (292)
Q Consensus       164 ~v~~Al~v~~a~~~~Ny~rfFk------------------ll~~-~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk--~~  222 (292)
                      +|++|+.++.|+++|||.+||+                  +... ..++|+.|+++.||+.+|..|++.|.+ +|+  ..
T Consensus       307 ~Vk~al~~~~a~~~nn~~~~~r~~~~~t~a~~~l~~~~~~l~q~p~~~~L~~~v~~~~f~~ir~~al~~~~~-~~~~~~~  385 (927)
T KOG1860|consen  307 EVKLALCLRRAFQSNNFRRFFRLSSLRTEALQNLYTRFFKLMQSPALPYLMGCVLELFFPDIRWAALRAMSH-AYNSKHV  385 (927)
T ss_pred             hHHHHHHHHHHhccCCeeeeeeccchhHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCC
Confidence            9999999999999999988874                  3322 468899999999999999999999999 574  46


Q ss_pred             CcCHHHHHHHhcCCc-hHHHHHHHHhCCeecccCCCc
Q 022787          223 PYPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGN  258 (292)
Q Consensus       223 ~ipl~~l~~~L~f~~-~e~~~f~~~~Gl~~~~d~~g~  258 (292)
                      +||+..+..+|+|+. ++...+|..|||+++.|..+.
T Consensus       386 ~vp~~~l~~~l~f~~~e~~~~~~~~y~Leis~~~~~~  422 (927)
T KOG1860|consen  386 PVPLGKLDRILLFDGEEELKVVCNYYGLEISVDDKIV  422 (927)
T ss_pred             CcchhHHHHHHhcCChhhhHhhhhheeeEeecccccc
Confidence            899999999999995 679999999999997655444

>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]	Back alignment and domain information

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]	Back alignment and domain information

>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]	Back alignment and domain information

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8	Back alignment and domain information

>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins	Back alignment and domain information

>KOG3252 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>smart00753 PAM PCI/PINT associated module	Back alignment and domain information

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	Back alignment and domain information

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		292
3t5v_A		316	Sac3:thp1:sem1 Complex Length = 316		5e-10

>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex Length = 316

Back alignment and structure

Iteration: 1

Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 24/226 (10%) Query: 41 FVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQ 100 F++DR RS+RQD QN +A++ E+IV+ H++ H + LEQ Sbjct: 35 FLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQ----ELEQ 90 Query: 101 LTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-----DSNGQPVGE--------S 147 L K+L +L +Y+ RSS EAEFR++ +L + D N Q + + Sbjct: 91 LHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHIFQDKLVQ 150 Query: 148 LSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEV 206 ++L FR V S ++ + + F Y RF + + + L ++ ++ ++ Sbjct: 151 MALCFRRVISNSAYTERGFVKTENCLNF----YARFFQLMQSPSLPLLMGFFLQMHLTDI 206 Query: 207 RSLALCCIHNCCYKLH-PYPLGHLSKVLMMEE-SDVELFCNAYGLQ 250 R AL + + K H P P +L +L+ ++ FCN Y ++ Sbjct: 207 RFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIE 252

PyMOL of 3t5v

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		292
3t5v_A		316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	5e-49
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 316	Back alignment and structure

 Score =  164 bits (416), Expect = 5e-49
 Identities = 68/283 (24%), Positives = 118/283 (41%), Gaps = 31/283 (10%)

Query: 8   ASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF 67
            SDVRP  +L +TL+Y++  L +T         F++DR RS+RQD   QN    +A++  
Sbjct: 5   PSDVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCN 61

Query: 68  EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAE 127
           E+IV+ H++  H +  S    S        LEQL K+L +L  +Y+  RSS      EAE
Sbjct: 62  ERIVRIHLLILHIMVKSNVEFS----LQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAE 117

Query: 128 FRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQ----------- 176
           FR++ +L  +               + +P  I + K +  A    R              
Sbjct: 118 FRAYALLSKIRDP------QYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVK 171

Query: 177 ----MGNYRRFLSTV-AAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH-PYPLGHLS 230
               +  Y RF   + +     L    ++ ++ ++R  AL  + +   K H P P  +L 
Sbjct: 172 TENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLE 231

Query: 231 KVLMME-ESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPK 272
            +L+     ++  FCN Y ++    +  +       +      
Sbjct: 232 NMLLFNNRQEIIEFCNYYSIEIINGDAADLKTLQHYSHKLSET 274

PyMOL of 3t5v

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		292
3t5v_A		316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	100.0
4b0z_A		229	RPN12, 26S proteasome regulatory subunit RPN12; pr	99.97
4b4t_T		274	26S proteasome regulatory subunit RPN12; hydrolase	99.96
1rz4_A		226	Eukaryotic translation initiation factor 3 subuni;	98.93
3txn_A		394	26S proteasome regulatory complex subunit P42B; PC	96.43
4b4t_O		393	26S proteasome regulatory subunit RPN9; hydrolase,	94.39
3t5x_A		203	PCI domain-containing protein 2; PCI, mRNA nuclear	94.05
4b4t_R		429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.01
3t5v_B		455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	89.6
4b4t_Q		434	26S proteasome regulatory subunit RPN6; hydrolase,	88.04
3chm_A		169	COP9 signalosome complex subunit 7; heat/ARM repea	86.63

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=2.7e-65  Score=471.40  Aligned_cols=259  Identities=26%  Similarity=0.380  Sum_probs=220.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHcCCCCChhhHHHhhhhhHHHHHhhhhhhhcCChhhHHHHHHHHHHHHHHHhhhhh
Q 022787            4 KEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRS   83 (292)
Q Consensus         4 ~~~~P~~vRP~~vL~kT~~yL~~~~~~~~~~~~~~y~Fi~DRlRaIRQDltvQ~i~~~~~i~v~E~~~Rf~i~~~~~l~~   83 (292)
                      ++|+|++||||+||++||+||++++...   +..+|+|||||||||||||||||+.++++|.|||+|+||||+|.|+||+
T Consensus         1 ~~P~P~~vRP~~vL~~Tl~yL~~~~~~~---~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~   77 (316)
T 3t5v_A            1 GSPLPSDVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVK   77 (316)
T ss_dssp             -----CCCCCHHHHHHHHHHHHHHTGGG---TTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhcCCHHHHHHHHHHHHHHHHhc---chhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999999988653   3468999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHhhhCChhhhcCH
Q 022787           84 SCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK  163 (292)
Q Consensus        84 ~~~~~~f~~~~~~n~~ql~qcl~~L~~lY~~~~~~~~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~sp  163 (292)
                      ..  .+|  ++++|.+|+++|+++|+++|++.++.|..++||+||+||+||+++++.+      +...+.++|++++++|
T Consensus        78 ~~--~~f--~~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~~------~~~~l~~Lp~~i~~~p  147 (316)
T 3t5v_A           78 SN--VEF--SLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQ------YDENIQRLPKHIFQDK  147 (316)
T ss_dssp             SC--CCC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCTH------HHHHHTTSCHHHHTSH
T ss_pred             CC--Ccc--chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccch------HHHHHHhCCHHHhcCH
Confidence            53  245  5799999999999999999999887778899999999999999998753      2345678999999999


Q ss_pred             hHHHHHHHHHHHH---------------hCcHHHHHHHHHh-cchHHHHHHHhhhHHHHHHHHHHHHHhhhcC--CCCcC
Q 022787          164 EMWFARQALRYFQ---------------MGNYRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYK--LHPYP  225 (292)
Q Consensus       164 ~v~~Al~v~~a~~---------------~~Ny~rfFkll~~-~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk--~~~ip  225 (292)
                      .|++|+++..|+.               .|||++||+++++ ++|||++|+|+.|++++|..||++|++ +|+  ..++|
T Consensus       148 ~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~k-ay~~k~~~~p  226 (316)
T 3t5v_A          148 LVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSH-TLNKKHKPIP  226 (316)
T ss_dssp             HHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHH-HSCTTCCCEE
T ss_pred             HHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCcC
Confidence            9999999999996               4899999998753 389999999999999999999999999 574  24799


Q ss_pred             HHHHHHHhcCCc-hHHHHHHHHhCCeecccCCCccc-cccCCCcccCCcCcccc
Q 022787          226 LGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKL-LPTKQTTFCRPKGGLQN  277 (292)
Q Consensus       226 l~~l~~~L~f~~-~e~~~f~~~~Gl~~~~d~~g~~~-l~~k~~~f~~~~~~~~~  277 (292)
                      +++|+++|+|++ +|+.+||++|||+++++ +|... ..+.++.|.+++..+.+
T Consensus       227 l~~L~~~L~Fds~ee~~~F~~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~p~~~  279 (316)
T 3t5v_A          227 FIYLENMLLFNNRQEIIEFCNYYSIEIING-DAADLKTLQHYSHKLSETQPLKK  279 (316)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHTTCCEETT-TEECGGGCCCSSSSCTTSCCCCC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHCCCeEeCC-CCchHHhhcchhccccccCCCcc
Confidence            999999999985 78999999999999753 34432 24567777766655443

PyMOL of 3t5v

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}	Back alignment and structure

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18	Back alignment and structure

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A	Back alignment and structure

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}	Back alignment and structure

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		292
d1rz4a1		85	Eukaryotic translation initiation factor 3 subunit	97.01
d1ufma_		84	COP9 signalosome complex subunit 4, GSN4 {Mouse (M	84.35

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00092  Score=47.40  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCC-chHHHHHHHHhCCeecccCCCccccccCCCcccCCcCccccc
Q 022787          202 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMME-ESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNY  278 (292)
Q Consensus       202 ~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f~-~~e~~~f~~~~Gl~~~~d~~g~~~l~~k~~~f~~~~~~~~~~  278 (292)
                      |-+.+|..+...+.. +|.  .||.+.|++|||.. +.+...+++.+||+..  ++|.. ++.++-...-|+...-+-
T Consensus         3 FedsIR~~i~~vv~i-Tyq--~I~~~~L~e~LG~~~d~~L~~~i~~~gW~~~--~~g~v-~v~nqe~~iK~kni~EkI   74 (85)
T d1rz4a1           3 FEDSVRKFICHVVGI-TYQ--HIDRWLLAEMLGDLSDSQLKVWMSKYGWSAD--ESGQI-FICSQEESIKPKNIVEKI   74 (85)
T ss_dssp             HHHHHHHHHHHHHHH-HCS--EECHHHHHHHTTSCCHHHHHHHHHHHTCEEC--C--CE-ECCCHHHHTSCCCSSCCC
T ss_pred             HHHHHHHHHHhheee-eee--EEcHHHHHHHhCCCCHHHHHHHHHHcCCEEc--CCCEE-EecChhhhcCccceeeec
Confidence            456799999999988 587  79999999999976 5779999999999984  34544 556666666664433333

PyMOL of d1rz4a1

>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure