Citrus Sinensis ID: 022801

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRDCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPKDNNGTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcEEEEEccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHcccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccEEcccccccccEEcccccccccccccEEEcccccccccccccEEccccccHHHHHHHHHHHHHccccccccccHHHHHHHccccEEEEEc
Coil and Loop (DISEMBL)
mdddalnmrnwgyyepsfkghlglqlmstmpmvdrdtkpflpgrdpnimigangafhprdcvvseasipmnymrdswiSQRDKFlnmlpsnptfgvlpetsgahslqmlqpppnmsrddrlapdrvapdrivpkveepvvktegapvkkrqgggaskmpkakkpkkpkdnngtavqrvkpakksMDVVINGidmdisgipipvcsctgapqqcyrwgcggwqsaccttnvsmyplpmstkrrgariagrkMSQGAFKKVLEKLAAEgynfanpidlrthwarhgtnkfvtir
Flexible Loop (DISEMBL)
MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRDCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDDRLAPDRVApdrivpkveepvvktegapvkkrqgggaskmpkakkpkkpkdnngtavqrvkpakksMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNfanpidlrthwarhgtnkfvtir
Low Complexity Region (SEG)
MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRDCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDDRLAPDRVAPDRIvpkveepvvkTEGAPVKKRQGGGASkmpkakkpkkpkDNNGTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Disordered region (IsUnstruct)
*******MRNWGYYEPSFKGHLGLQLMSTMPMVDR*TKPFLPGRDPNIMIGANGAFHPRDCVVSEASIPMNYMRDSWISQRDKFLNML************************************************************************************************MDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPM***************QGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFV***
Disordered Region (DISOPRED)
**DDALNMRNWGYYEPSFKGHLGLQLMST**********************************SEASIPMNYMRDSWISQRDKFLNMLPSNP**********************************************************************************************VVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPM*************MSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Disordered Region (DISEMBL)
MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRDCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDDRLAPDRVAPDRIVPKVEEPVV****************************************AKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Disordered Region (DISPRO)
****ALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRDCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPN*********************************************************************SMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRDCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPKDNNGTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
Q9SKD0	283	Protein BASIC PENTACYSTEI	yes	no	0.917	0.946	0.592	2e-91
Q9LDE2	279	Protein BASIC PENTACYSTEI	no	no	0.917	0.960	0.590	4e-89
Q9C9X6	269	Protein BASIC PENTACYSTEI	no	no	0.866	0.940	0.5	4e-70
Q8GUC3	350	Protein Barley B recombin	N/A	no	0.890	0.742	0.437	2e-66
P0DH89	341	Barley B recombinant-like	yes	no	0.982	0.841	0.471	1e-62
P0DH88	341	Barley B recombinant-like	yes	no	0.982	0.841	0.471	1e-62
Q7XH85	290	Barley B recombinant-like	no	no	0.948	0.955	0.478	3e-53
O82286	226	Protein BASIC PENTACYSTEI	no	no	0.458	0.592	0.547	1e-40
Q5VSA8	331	Barley B recombinant-like	no	no	0.921	0.812	0.324	9e-37
Q8S8C6	296	Protein BASIC PENTACYSTEI	no	no	0.811	0.800	0.347	9e-36

>sp|Q9SKD0|BPC1_ARATH Protein BASIC PENTACYSTEINE1 OS=Arabidopsis thaliana GN=BPC1 PE=1 SV=1

 Score =  335 bits (860), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/307 (59%), Positives = 217/307 (70%), Gaps = 39/307 (12%)

Query: 1   MDDDALNMRNWGYYEP----SFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAF 56
           MDDD    RNWGYYEP    SFKG+LGLQLMST   +DR+TKPFLPGR+ N+MIG+NG++
Sbjct: 1   MDDDGF--RNWGYYEPAAASSFKGNLGLQLMST---IDRNTKPFLPGRESNLMIGSNGSY 55

Query: 57  HPRDCVVSEASIPMNYMRDSWISQ--RDKFLNMLP-SNPTFG-VLPETSGAHSLQMLQPP 112
           H R+         MNY   SWI+Q   +KF NMLP S P++  VL ETSG++S+QM+  P
Sbjct: 56  HSRE-------QDMNY---SWINQPKDNKFFNMLPISTPSYSNVLSETSGSNSIQMIHQP 105

Query: 113 PNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPKD--- 169
                   L   R   + I P    P  +  G   K R       +PKAKK +KPK+   
Sbjct: 106 V-------LNSSRFEENPIPPPA--PCEEQTGKKRKMRGSIATPTVPKAKKMRKPKEERD 156

Query: 170 ----NNGTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSAC 225
               N     QRVKP KKS+D+VING+ MDISG+P+PVC+CTG PQQCYRWGCGGWQSAC
Sbjct: 157 VTNNNVQQQQQRVKPVKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSAC 216

Query: 226 CTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGT 285
           CTTN+S+YPLPMSTKRRGARI+GRKMSQGAFKKVLEKL+ EGY+F N IDL++HWARHGT
Sbjct: 217 CTTNISVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKSHWARHGT 276

Query: 286 NKFVTIR 292
           NKFVTIR
Sbjct: 277 NKFVTIR 283

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDE2|BPC2_ARATH Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thaliana GN=BPC2 PE=1 SV=1

 Score =  327 bits (839), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/303 (59%), Positives = 216/303 (71%), Gaps = 35/303 (11%)

Query: 1   MDDDALNMRNWGYYEP---SFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFH 57
           MDDD    RNWGYYEP   +FKG+LGLQLMST   +DR+TKPFLPGRDPN+M+G NG++H
Sbjct: 1   MDDDGF--RNWGYYEPAAATFKGNLGLQLMST---IDRNTKPFLPGRDPNLMMGPNGSYH 55

Query: 58  PRDCVVSEASIPMNYMRDSWISQ-RDKFLNMLP---SNPTFG-VLPETSGAHSLQMLQPP 112
            +     E  I M+Y   +WI+Q +DKF NMLP   + P +G VLPETS A S+QM    
Sbjct: 56  HQ-----EPPIHMSY---NWINQQKDKFFNMLPVTTATPNYGNVLPETSSAPSMQM---- 103

Query: 113 PNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAK---KPKKPKD 169
                   L       +  V   EE VV+T+      + G         K   +     +
Sbjct: 104 -------NLHHHLQTEENPVKLEEEIVVQTKKRKTNAKAGSTPKAKKPRKPKDENSNNNN 156

Query: 170 NNGTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTN 229
           NN T V RVKPAKKS+D+VING+ MDISG+P+P+C+CTGAPQQCYRWGCGGWQSACCTTN
Sbjct: 157 NNNTNVTRVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTN 216

Query: 230 VSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFV 289
           +SM+PLPMSTKRRGARI+GRKMSQGAFKKVLEKLA++G+NF NPIDL++HWARHGTNKFV
Sbjct: 217 ISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFV 276

Query: 290 TIR 292
           TIR
Sbjct: 277 TIR 279

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9X6|BPC3_ARATH Protein BASIC PENTACYSTEINE3 OS=Arabidopsis thaliana GN=BPC3 PE=1 SV=1

 Score =  265 bits (676), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 154/308 (50%), Positives = 200/308 (64%), Gaps = 55/308 (17%)

Query: 1   MDDDALNMRNWGYYEPS-FKGHLGLQLMSTMPMVDRDTKPFLPGRDPNI-MIGANGAF-- 56
           M++D LN RNWGYYEPS F+ +LG QL+ ++  +DR+ KPFL     N+  I  +  +  
Sbjct: 1   MEEDGLNNRNWGYYEPSQFRPNLGFQLIPSI--LDRNEKPFLSPHSQNLNFITPSNVYGG 58

Query: 57  -------HPRDCVVSEASIPMNYMRDSWISQR--DKFLNMLPSNPTFGVLPETSG-AHSL 106
                  +PRD  VS+A     +M  SW++Q    KF         F  +PE S    S+
Sbjct: 59  GSSSVVSYPRDYTVSDAP----FMSYSWLNQHKDSKF---------FSNVPEVSRMTQSM 105

Query: 107 QMLQPPPNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKK 166
           Q+LQP                   +V +V+E V +   +      GG    +PK KK KK
Sbjct: 106 QLLQP------------------EVVTEVDESVKRRHCS------GGQRGGVPKVKKEKK 141

Query: 167 PKDNNGTAVQRVKP--AKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSA 224
            KDNN   VQR +    +K +++VING+ MDI G+P+PVCSCTG PQQCYRWGCGGWQSA
Sbjct: 142 LKDNNMPRVQRERSPLLRKCIEMVINGVSMDIGGLPVPVCSCTGMPQQCYRWGCGGWQSA 201

Query: 225 CCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHG 284
           CCTTNVSMYPLP++TKRRGARIAGRKMSQGAF+KVLEKL+++G++F+NPIDL++HWA+HG
Sbjct: 202 CCTTNVSMYPLPVNTKRRGARIAGRKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHG 261

Query: 285 TNKFVTIR 292
           TNKFVTIR
Sbjct: 262 TNKFVTIR 269

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUC3|BBR_HORVU Protein Barley B recombinant OS=Hordeum vulgare GN=BBR PE=1 SV=1

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/382 (43%), Positives = 204/382 (53%), Gaps = 122/382 (31%)

Query: 1   MDDD-ALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAF--- 56
           MDDD +L++RNWG+YE + KG+LGLQLM ++    RDTKP LP          NG F   
Sbjct: 1   MDDDGSLSIRNWGFYE-TMKGNLGLQLMPSVTGGHRDTKPLLP----------NGTFLQH 49

Query: 57  -----------HPRDCVVSEAS---------IPMNYMR-DSWI----------------- 78
                      HPRD    E S         I M+++R ++W+                 
Sbjct: 50  HTPPHHPPHSHHPRDYGNGEPSGGMPAEPPAIHMDFVRNEAWMHPSQHQHQHQHQHQHQH 109

Query: 79  --------------SQRDKFLNMLPSNPT----------------FGVLPETSGAHSLQM 108
                         S+  K LN +P  P                 FG++P+  GAH+LQM
Sbjct: 110 QHQHQLQHQHQHQHSRELKVLNAVPVGPAPHIGHPGHAVHHHPTGFGMMPDARGAHTLQM 169

Query: 109 LQP-PPNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGG-------------- 153
           +QP  P +  ++++ P         P VE+  V     PVKKRQ G              
Sbjct: 170 MQPQEPPVPDEEKITP---------PLVEDHSVVGSKPPVKKRQQGRQPKVPKPKKPKKD 220

Query: 154 ---GASKMPKAKKPKKPKDNNGTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAP 210
              G    PKA+ P            R +   K +++VINGID DIS IP PVCSCTGAP
Sbjct: 221 ATPGEDGAPKARAP------------RSRGPLKPVEMVINGIDFDISRIPTPVCSCTGAP 268

Query: 211 QQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNF 270
           QQCYRWG GGWQSACCTT++S YPLPM+TKRRGARIAGRKMSQGAFKKVLEKLA EGYN 
Sbjct: 269 QQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNL 328

Query: 271 ANPIDLRTHWARHGTNKFVTIR 292
            NPIDL+T WA+HGTNKFVTIR
Sbjct: 329 NNPIDLKTFWAKHGTNKFVTIR 350

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3.

Hordeum vulgare (taxid: 4513)

>sp|P0DH89|BBRB_ORYSJ Barley B recombinant-like protein B OS=Oryza sativa subsp. japonica GN=Os10g0115200 PE=2 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 163/346 (47%), Positives = 202/346 (58%), Gaps = 59/346 (17%)

Query: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGR-------DPNIMIGAN 53
           MDDDA     WG +  S   +LGLQLMS++P  +RDTK  L G          ++    +
Sbjct: 1   MDDDASMSIRWGGFFESPARNLGLQLMSSVP-AERDTKQLLSGSPFLHHQHQQHVPHHHH 59

Query: 54  GAFHPRDCVVSEA----------------SIPMNYMR-DSWIS----------QRDKFLN 86
              HPRDC  +                  S+PMN+ R D W+           +  K L+
Sbjct: 60  QPHHPRDCGANGNANGGAMPPPPATEAPPSMPMNFARSDMWMHPQQQQQHHHPREHKALH 119

Query: 87  MLP----------SNPT-FGVLPETSGAHSLQMLQPPPNMSRDDRLAPDRVAPDRIV-PK 134
            L            +P  +G++P   G H+LQM+Q            P +   + I  P 
Sbjct: 120 NLTVGHGSSHIAHHDPVGYGMIP---GTHTLQMMQQQTEPQLQPPPPPQQPKEECISSPL 176

Query: 135 VEEPV-VKTEGAPVKKRQGGGASKMPKAKKPKK---PKDN----NGTAVQRVKPAKKSMD 186
           +EE V V  E  P KKRQ G   K+P+AKKPKK   P+++    N  A +R  P +K++ 
Sbjct: 177 IEENVPVIDEPPPPKKRQQGRQPKVPRAKKPKKSAAPREDGAPPNAPAPRRRGP-RKNIG 235

Query: 187 VVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARI 246
           +VINGID+D+S IP P+CSCTGAPQQCYRWG GGWQSACCTT +S YPLPMSTKRRGARI
Sbjct: 236 MVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARI 295

Query: 247 AGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           AGRKMS GAFKKVLEKLA EGYN  NPIDL+T WA+HGTNKFVTIR
Sbjct: 296 AGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0DH88|BBRA_ORYSJ Barley B recombinant-like protein A OS=Oryza sativa subsp. japonica GN=Os10g0114500 PE=2 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 163/346 (47%), Positives = 202/346 (58%), Gaps = 59/346 (17%)

Query: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGR-------DPNIMIGAN 53
           MDDDA     WG +  S   +LGLQLMS++P  +RDTK  L G          ++    +
Sbjct: 1   MDDDASMSIRWGGFFESPARNLGLQLMSSVP-AERDTKQLLSGSPFLHHQHQQHVPHHHH 59

Query: 54  GAFHPRDCVVSEA----------------SIPMNYMR-DSWIS----------QRDKFLN 86
              HPRDC  +                  S+PMN+ R D W+           +  K L+
Sbjct: 60  QPHHPRDCGANGNANGGAMPPPPATEAPPSMPMNFARSDMWMHPQQQQQHHHPREHKALH 119

Query: 87  MLP----------SNPT-FGVLPETSGAHSLQMLQPPPNMSRDDRLAPDRVAPDRIV-PK 134
            L            +P  +G++P   G H+LQM+Q            P +   + I  P 
Sbjct: 120 NLTVGHGSSHIAHHDPVGYGMIP---GTHTLQMMQQQTEPQLQPPPPPQQPKEECISSPL 176

Query: 135 VEEPV-VKTEGAPVKKRQGGGASKMPKAKKPKK---PKDN----NGTAVQRVKPAKKSMD 186
           +EE V V  E  P KKRQ G   K+P+AKKPKK   P+++    N  A +R  P +K++ 
Sbjct: 177 IEENVPVIDEPPPPKKRQQGRQPKVPRAKKPKKSAAPREDGAPPNAPAPRRRGP-RKNIG 235

Query: 187 VVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARI 246
           +VINGID+D+S IP P+CSCTGAPQQCYRWG GGWQSACCTT +S YPLPMSTKRRGARI
Sbjct: 236 MVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARI 295

Query: 247 AGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           AGRKMS GAFKKVLEKLA EGYN  NPIDL+T WA+HGTNKFVTIR
Sbjct: 296 AGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XH85|BBRC_ORYSJ Barley B recombinant-like protein C OS=Oryza sativa subsp. japonica GN=Os10g0115500 PE=2 SV=2

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 180/305 (59%), Gaps = 28/305 (9%)

Query: 1   MDDDA----LNMRNWG-YYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGA 55
           M+DDA    + +R WG +YEP  + +LGLQLMS++P  DRDTK  L    P +       
Sbjct: 1   MNDDASMSSMGLRGWGAFYEPPAR-NLGLQLMSSVP-ADRDTKHLLSA-TPFL------H 51

Query: 56  FHPRDCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQ--PPP 113
            H     V       ++ RD   +          +   +G++P T   H+L+MLQ  P P
Sbjct: 52  HHQHQQYVPHHHHQPHHPRDCGTNANANGNG---NGVGYGMMPAT---HTLRMLQHQPEP 105

Query: 114 NMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPKDNNGT 173
                   +P     + I P + E  V  +  P KKRQ G   K+ + KKPKKP      
Sbjct: 106 QPQLQHPPSPPHPKEECISPPLMEENVPVKPPPPKKRQQGRQPKVLRPKKPKKPAAPCED 165

Query: 174 AVQRVKPA------KKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCT 227
                 PA      +K++ +VINGID+D+S IP  +CSCTGAPQQ YRWG GGWQSACCT
Sbjct: 166 GAPPSAPAPRRRGPRKNIGMVINGIDLDLSRIPTRICSCTGAPQQRYRWGAGGWQSACCT 225

Query: 228 TNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNK 287
           T VS YPLPMS K RGARIAGRKMS GAFKKVLEKLA+EGYN  NPIDL+T WA+HGTNK
Sbjct: 226 TTVSTYPLPMSMKPRGARIAGRKMSHGAFKKVLEKLASEGYNLNNPIDLKTFWAKHGTNK 285

Query: 288 FVTIR 292
           FVTIR
Sbjct: 286 FVTIR 290

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82286|BPC7_ARATH Protein BASIC PENTACYSTEINE7 OS=Arabidopsis thaliana GN=BPC7 PE=1 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 3/137 (2%)

Query: 159 PKAKKPKKPKDNNGT---AVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYR 215
           PK ++ K+   N      ++   K  KK++D+ I+    D SG+P PVCSCTG  + CY+
Sbjct: 90  PKPQRKKRSVSNKSKKTPSIPETKREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYK 149

Query: 216 WGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPID 275
           WG GGWQS+CCT ++S YPLPMST R GAR+AGRKMS GA+ K+L +LA EGY+ ++P+D
Sbjct: 150 WGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLADEGYDLSHPLD 209

Query: 276 LRTHWARHGTNKFVTIR 292
           L+ HWARHGTNKFVTI+
Sbjct: 210 LKNHWARHGTNKFVTIK 226

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VSA8|BBRD_ORYSJ Barley B recombinant-like protein D OS=Oryza sativa subsp. japonica GN=Os06g0130600 PE=2 SV=1

 Score =  154 bits (388), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 36/305 (11%)

Query: 18  FKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRDCVVSEASIPMNYMRDSW 77
            K H  + L++ M   DRD    +  RD + +     A   RD   ++    M   R++ 
Sbjct: 33  LKDHQSMNLLALMN--DRDNA--IRERD-HALAEKKAAIAERDMAFTQRDAAM-AERNAA 86

Query: 78  ISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDDRLAPDRVAPDRIVPKVEE 137
           + +RD  L  L    T G+            L    N+   D+L+  + +P ++     +
Sbjct: 87  VVERDNALAALELARTNGLNMNNGNGFPQGSLSGSKNIHHHDQLSHAQSSPLQLADSPYD 146

Query: 138 PVVK---TEGAPVKKRQG-GGASKMPKA---------------KKPKKPKDN-------- 170
              +   +E  P+    G  G +K PK                +K KKP  +        
Sbjct: 147 HAREMHISEAYPISTAPGSAGKAKRPKKNSSQASPLKRPSGVLRKTKKPSGDWKNVGMSG 206

Query: 171 ---NGTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCT 227
              +      +K   K  ++ +N +  D S +P P CSCTG  +QCY+WG GGWQS+CCT
Sbjct: 207 CGDDSAHASVMKNEWKDQNLGLNQVAFDDSTMPAPACSCTGKLRQCYKWGNGGWQSSCCT 266

Query: 228 TNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNK 287
            N+SMYPLP+   +R AR+ GRKMS GAF K+L +LAAEG++ + P+DL+ HWA+HGTN+
Sbjct: 267 MNISMYPLPVMPNKRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNR 326

Query: 288 FVTIR 292
           ++TIR
Sbjct: 327 YITIR 331

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S8C6|BPC4_ARATH Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thaliana GN=BPC4 PE=1 SV=1

 Score =  150 bits (379), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 134/259 (51%), Gaps = 22/259 (8%)

Query: 47  NIMIGANGAFHPRDCVVSEASIPMNYMRDSWISQRDKFLN-----MLPSNPTFGVLPETS 101
           +I+   + A H R+  VS A       RD  + QRDK L+     ++  +  +  L    
Sbjct: 47  SILAERDAAVHERNQAVS-AKKEAVAARDEALQQRDKALSERDKALIERDNAYAALQHHE 105

Query: 102 GAHSLQMLQPPPNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKA 161
            + +   L     +  DD           + P    P   T    V KR+      + K 
Sbjct: 106 NSLNF-ALSGGKCVDGDDCFGIGEPHKLEVFPLSTIPPEVTNTKVVNKRKKENKQGLSKV 164

Query: 162 KKPKKPKDNNGTAVQRVKPA--KKS------MDVVINGIDMDISGIPIPVCSCTGAPQQC 213
           KK        G  + R  PA  KKS       DV +N +  D + +P+P+CSCTG+ +QC
Sbjct: 165 KKV-------GEDLNRRVPAPGKKSRTDWDSQDVGLNLVTFDETTMPVPMCSCTGSTRQC 217

Query: 214 YRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANP 273
           Y+WG GGWQS+CCTT +S YPLP    +R +R+ GRKMS   F ++L +L+AEGY+ + P
Sbjct: 218 YKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLSAEGYDLSCP 277

Query: 274 IDLRTHWARHGTNKFVTIR 292
           +DL+ +WARHGTN+++TI+
Sbjct: 278 VDLKDYWARHGTNRYITIK 296

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
255561799	283	conserved hypothetical protein [Ricinus	0.952	0.982	0.801	1e-125
449464866	279	PREDICTED: protein BASIC PENTACYSTEINE1-	0.955	1.0	0.726	1e-118
147768955	411	hypothetical protein VITISV_038800 [Viti	0.952	0.676	0.700	1e-118
225424484	293	PREDICTED: protein BASIC PENTACYSTEINE1	0.952	0.948	0.700	1e-117
388512125	278	unknown [Lotus japonicus]	0.952	1.0	0.75	1e-116
319718199	278	GAGA-binding transcriptional activator [	0.952	1.0	0.75	1e-115
157400524	279	GAGA-motif binding transcriptional activ	0.948	0.992	0.761	1e-115
224108195	279	predicted protein [Populus trichocarpa]	0.948	0.992	0.761	1e-115
224101949	279	predicted protein [Populus trichocarpa]	0.948	0.992	0.731	1e-114
356528184	333	PREDICTED: uncharacterized protein LOC10	0.952	0.834	0.726	1e-112

>gi|255561799|ref|XP_002521909.1| conserved hypothetical protein [Ricinus communis] gi|223538947|gb|EEF40545.1| conserved hypothetical protein [Ricinus communis]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/297 (80%), Positives = 255/297 (85%), Gaps = 19/297 (6%)

Query: 1   MDD--DALNM--RNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPN-IMIGANGA 55
           MDD  D LNM  RNWGYYEP+FKGHLGLQLMS+M   DRDTK FLPGRDPN IM+GANGA
Sbjct: 1   MDDPEDTLNMNIRNWGYYEPNFKGHLGLQLMSSM--ADRDTKHFLPGRDPNGIMVGANGA 58

Query: 56  FHPRDCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNM 115
           FHPRDCVVS+A  PMNYMRDSWISQR+K  NMLP NP + VLPETSGAHSLQ+LQPP N 
Sbjct: 59  FHPRDCVVSDAPGPMNYMRDSWISQREKLFNMLPPNPNYAVLPETSGAHSLQVLQPP-NP 117

Query: 116 SRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPKDNNGTAV 175
           SRD+R             ++EEP V  E + +KKRQ GGA K PKAKKP+KPKDN+  AV
Sbjct: 118 SRDERAG-----------RIEEPSVHKESSQLKKRQSGGAPKTPKAKKPRKPKDNSNNAV 166

Query: 176 QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPL 235
           QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTG+PQQCYRWGCGGWQSACCTTNVS+YPL
Sbjct: 167 QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSVYPL 226

Query: 236 PMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           PMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWA+HGTNKFVTIR
Sbjct: 227 PMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464866|ref|XP_004150150.1| PREDICTED: protein BASIC PENTACYSTEINE1-like [Cucumis sativus] gi|449521842|ref|XP_004167938.1| PREDICTED: protein BASIC PENTACYSTEINE1-like [Cucumis sativus]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/292 (72%), Positives = 237/292 (81%), Gaps = 13/292 (4%)

Query: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRD 60
           MDDDALNMRNWGYYEPSFKGHLGLQLMST+   +RD K FLPGRDP++M+ ANG+FHPRD
Sbjct: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTIS--ERDMKHFLPGRDPSVMVNANGSFHPRD 58

Query: 61  CVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDDR 120
           CVVSEA + MNY+RD+W   RD+FLNMLP+N ++ V+PETSGAHSLQ+LQPP + SRD+ 
Sbjct: 59  CVVSEAPVHMNYVRDNWGGNRDRFLNMLPTNHSYPVMPETSGAHSLQILQPPSS-SRDEI 117

Query: 121 LAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPKDNNGTAVQRVKP 180
            A           +VEEP VK EG   KKRQ   A       K  +   +  TAVQRVKP
Sbjct: 118 AAS----------RVEEPPVKKEGGKAKKRQSSEAGPKAPKAKKPRKPKDTSTAVQRVKP 167

Query: 181 AKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTK 240
            KK++D+VINGIDMDIS IPIPVCSCTGAP QCYRWGCGGWQSACCTTN+S YPLPMS K
Sbjct: 168 PKKNIDLVINGIDMDISCIPIPVCSCTGAPHQCYRWGCGGWQSACCTTNISTYPLPMSDK 227

Query: 241 RRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           RRGARIAGRKMSQGAFKKVLEKLAA+GYNFANPIDLRTHWARHGTNKFVTIR
Sbjct: 228 RRGARIAGRKMSQGAFKKVLEKLAADGYNFANPIDLRTHWARHGTNKFVTIR 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768955|emb|CAN69256.1| hypothetical protein VITISV_038800 [Vitis vinifera]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/307 (70%), Positives = 246/307 (80%), Gaps = 29/307 (9%)

Query: 1   MDDDA-LNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPR 59
           MDDD  LNMRNWGYYEP+FKGHL LQLMS++   +RDTKPFLPGRD  +M+ ANGAFHPR
Sbjct: 1   MDDDGGLNMRNWGYYEPAFKGHLNLQLMSSV--AERDTKPFLPGRDSPLMVSANGAFHPR 58

Query: 60  DCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPE----------TSGAHSLQML 109
           DC+VSEA + M+Y+RDSWI+QRDKFLN+LP N  F VLPE          ++ AH +Q++
Sbjct: 59  DCMVSEAPVHMDYVRDSWINQRDKFLNILPGNSNFQVLPEAPLGKEKFYHSTEAHPMQII 118

Query: 110 QPPPNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKK--- 166
           Q P   S+D+R           V ++E+  +K EG P+KKR GGGA K PK +K KK   
Sbjct: 119 QQP-EPSKDER-----------VGRMEDSDLKKEGGPLKKRTGGGAPKTPKIRKTKKGPS 166

Query: 167 -PKDNNGTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSAC 225
            PKD   ++VQRVKPAKK+MDVVINGIDMDISGIPIPVCSCTG PQQCYRWGCGGWQSAC
Sbjct: 167 VPKDGTNSSVQRVKPAKKNMDVVINGIDMDISGIPIPVCSCTGNPQQCYRWGCGGWQSAC 226

Query: 226 CTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGT 285
           CTT++SMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLR HWA+HGT
Sbjct: 227 CTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRRHWAKHGT 286

Query: 286 NKFVTIR 292
           NKFVTIR
Sbjct: 287 NKFVTIR 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424484|ref|XP_002285185.1| PREDICTED: protein BASIC PENTACYSTEINE1 isoform 1 [Vitis vinifera] gi|183604855|gb|ACC64525.1| GAGA-binding transcriptional activator BBR/BPC1-like [Vitis vinifera] gi|183604857|gb|ACC64526.1| GAGA-binding transcriptional activator BBR/BPC1-like [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/307 (70%), Positives = 246/307 (80%), Gaps = 29/307 (9%)

Query: 1   MDDDA-LNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPR 59
           MDDD  LNMRNWGYYEP+FKGHL LQLMS++   +RDTKPFLPGRD  +M+ ANGAFHPR
Sbjct: 1   MDDDGGLNMRNWGYYEPAFKGHLNLQLMSSV--AERDTKPFLPGRDSPLMVSANGAFHPR 58

Query: 60  DCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPE----------TSGAHSLQML 109
           DC+VSEA + M+Y+RDSWI+QRDKFLN+LP N  F VLPE          ++ AH +Q++
Sbjct: 59  DCMVSEAPVHMDYVRDSWINQRDKFLNILPGNSNFQVLPEAPLGKEKFYHSTEAHPMQII 118

Query: 110 QPPPNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKK--- 166
           Q P   S+D+R           V ++E+  +K EG P+KKR GGGA K PK +K KK   
Sbjct: 119 QQP-EPSKDER-----------VGRMEDSDLKKEGGPLKKRTGGGAPKTPKIRKTKKGPS 166

Query: 167 -PKDNNGTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSAC 225
            PKD   ++VQRVKPAKK+MDVVINGIDMDISGIPIPVCSCTG PQQCYRWGCGGWQSAC
Sbjct: 167 VPKDGTNSSVQRVKPAKKNMDVVINGIDMDISGIPIPVCSCTGNPQQCYRWGCGGWQSAC 226

Query: 226 CTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGT 285
           CTT++SMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLR HWA+HGT
Sbjct: 227 CTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRRHWAKHGT 286

Query: 286 NKFVTIR 292
           NKFVTIR
Sbjct: 287 NKFVTIR 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512125|gb|AFK44124.1| unknown [Lotus japonicus]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/292 (75%), Positives = 242/292 (82%), Gaps = 14/292 (4%)

Query: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRD 60
           MDDD LNM NWGYYEP   GHLGLQLM  M   DRDTKPF PGRDP +++GANGAFHPRD
Sbjct: 1   MDDDVLNMPNWGYYEPFKGGHLGLQLMPGM--ADRDTKPFFPGRDPAMLVGANGAFHPRD 58

Query: 61  CVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDDR 120
           CVVSE  +PMNY+RD+WI+QRD+  NM P NP + VLPETSGA SL ++QP  ++SRD++
Sbjct: 59  CVVSEPPMPMNYVRDNWINQRDRIFNMQPPNPNYAVLPETSGAPSLSVIQPH-DISRDEK 117

Query: 121 LAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPKDNNGTAVQRVKP 180
                  PDRI    EE VVK EG   KKRQ  GA   PKAKKP+KPKDN+  AVQRVKP
Sbjct: 118 -------PDRI----EELVVKKEGGQSKKRQSKGALTTPKAKKPRKPKDNSNVAVQRVKP 166

Query: 181 AKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTK 240
            KK M++VINGIDMDISG+P+PVCSCTG+PQQCYRWGCGGWQSACCTTNVS+YPLPMS K
Sbjct: 167 PKKPMELVINGIDMDISGLPVPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSIK 226

Query: 241 RRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           RRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Sbjct: 227 RRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 278

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319718199|gb|ADV59401.1| GAGA-binding transcriptional activator [Lotus japonicus] gi|388491816|gb|AFK33974.1| unknown [Lotus japonicus]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/292 (75%), Positives = 242/292 (82%), Gaps = 14/292 (4%)

Query: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRD 60
           MDDD LNM NWGYYEP   GHLGLQLM  M   DRDTKPF PGRDP +++GANGAFHPRD
Sbjct: 1   MDDDVLNMPNWGYYEPFKGGHLGLQLMPGM--ADRDTKPFFPGRDPAMLVGANGAFHPRD 58

Query: 61  CVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDDR 120
           CVVSE  +PMNY+RD+WI+QRD+  NM P NP + VLPETSGA SL ++QP  ++SRD++
Sbjct: 59  CVVSEPPMPMNYVRDNWINQRDRIFNMQPPNPNYAVLPETSGAPSLPVIQPH-DISRDEK 117

Query: 121 LAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPKDNNGTAVQRVKP 180
                  PDRI    EE VVK EG   KKRQ  GA   PKAKKP+KPKDN+  AVQRVKP
Sbjct: 118 -------PDRI----EELVVKKEGGQSKKRQSKGALTTPKAKKPRKPKDNSNVAVQRVKP 166

Query: 181 AKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTK 240
            KK M++VINGIDMDISG+P+PVCSCTG+PQQCYRWGCGGWQSACCTTNVS+YPLPMS K
Sbjct: 167 PKKPMELVINGIDMDISGLPVPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSIK 226

Query: 241 RRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           RRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Sbjct: 227 RRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 278

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157400524|gb|ABV53916.1| GAGA-motif binding transcriptional activator [Populus trichocarpa]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/294 (76%), Positives = 245/294 (83%), Gaps = 17/294 (5%)

Query: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPN-IMIGANGAFHPR 59
           MDDDALNMRNWGYYEPS+K  LGLQLM  M  VDRD+K  LP RDPN IM+GA GA+ PR
Sbjct: 1   MDDDALNMRNWGYYEPSYKEPLGLQLMPAM--VDRDSKHLLPRRDPNNIMVGATGAYLPR 58

Query: 60  DCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDD 119
           D +VS+AS+ MNYMRDSWI+ R+K+LNMLP NP++ V PETSGA S+ MLQPP + SRD+
Sbjct: 59  DSLVSDASMHMNYMRDSWIN-REKYLNMLPPNPSYVVHPETSGAQSMPMLQPP-DSSRDE 116

Query: 120 RLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQ-GGGASKMPKAKKPKKPKDNNGTAVQRV 178
           R           V ++EEP V  EG+ +KKRQ GG A K PK KKP+KPKD N   VQR 
Sbjct: 117 R-----------VSRMEEPSVSKEGSQLKKRQVGGTAPKTPKPKKPRKPKDGNNNTVQRA 165

Query: 179 KPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMS 238
           KPAKKS+DVVINGIDMDISGIPIPVCSCTG PQQCYRWGCGGWQSACCTTNVSMYPLPMS
Sbjct: 166 KPAKKSVDVVINGIDMDISGIPIPVCSCTGIPQQCYRWGCGGWQSACCTTNVSMYPLPMS 225

Query: 239 TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Sbjct: 226 TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108195|ref|XP_002314755.1| predicted protein [Populus trichocarpa] gi|222863795|gb|EEF00926.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/294 (76%), Positives = 245/294 (83%), Gaps = 17/294 (5%)

Query: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPN-IMIGANGAFHPR 59
           MDDDALNMRNWGYYEPS+K  LGLQLM  M  VDRD+K  LP RDPN IM+GA GA+ PR
Sbjct: 1   MDDDALNMRNWGYYEPSYKEPLGLQLMPAM--VDRDSKHLLPRRDPNNIMVGATGAYLPR 58

Query: 60  DCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDD 119
           + +VS+AS+ MNYMRDSWI+ R+KFLNMLP NP++ V PETSGA S+ MLQPP + SRD+
Sbjct: 59  ESLVSDASMHMNYMRDSWIN-REKFLNMLPPNPSYVVHPETSGAQSMPMLQPP-DSSRDE 116

Query: 120 RLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQ-GGGASKMPKAKKPKKPKDNNGTAVQRV 178
           R           V ++EEP V  EG+ +KKRQ GG A K PK KKP+KPKD N   VQR 
Sbjct: 117 R-----------VSRMEEPSVSKEGSQLKKRQVGGTAPKTPKPKKPRKPKDGNNNTVQRA 165

Query: 179 KPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMS 238
           KPAKKS+DVVINGIDMDISGIPIPVCSCTG PQQCYRWGCGGWQSACCTTNVSMYPLPMS
Sbjct: 166 KPAKKSVDVVINGIDMDISGIPIPVCSCTGIPQQCYRWGCGGWQSACCTTNVSMYPLPMS 225

Query: 239 TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Sbjct: 226 TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101949|ref|XP_002312486.1| predicted protein [Populus trichocarpa] gi|118481837|gb|ABK92855.1| unknown [Populus trichocarpa] gi|157400522|gb|ABV53915.1| GAGA-motif binding transcriptional activator [Populus trichocarpa] gi|222852306|gb|EEE89853.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/294 (73%), Positives = 234/294 (79%), Gaps = 17/294 (5%)

Query: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDP-NIMIGANGAFHPR 59
           MDDDALNM NWGYYEPS+K   GLQ M +M  VDRDTK FLP RDP NIMIGANGA+ P 
Sbjct: 1   MDDDALNMHNWGYYEPSYKEPFGLQWMPSM--VDRDTKHFLPRRDPINIMIGANGAYLPH 58

Query: 60  DCVVSEASIPMNYMRDSWISQRDKFLNMLPSNPTFGVLPETSGAHSLQMLQPPPNMSRDD 119
           DCVVS+A   MNYMRDSWI+ R+KFLN+LP NP + V  +TSGAHS+QMLQPP N SRD+
Sbjct: 59  DCVVSDAPEHMNYMRDSWIN-REKFLNILPPNPNYVVPQQTSGAHSMQMLQPP-NSSRDE 116

Query: 120 RLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPK-DNNGTAVQRV 178
           RL+           ++EEP V  EG  +K+RQ GG S      K  +   D N   VQR 
Sbjct: 117 RLS-----------RIEEPSVSNEGNQLKRRQVGGTSPKTPKAKKPRKPKDGNNNTVQRA 165

Query: 179 KPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMS 238
           KPAKKS+DVVINGIDMDISGIPIP CSCTG PQQCYRWGCGGWQSACCTTNVS+YPLPMS
Sbjct: 166 KPAKKSVDVVINGIDMDISGIPIPTCSCTGTPQQCYRWGCGGWQSACCTTNVSVYPLPMS 225

Query: 239 TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Sbjct: 226 TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528184|ref|XP_003532685.1| PREDICTED: uncharacterized protein LOC100791533 [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/293 (72%), Positives = 241/293 (82%), Gaps = 15/293 (5%)

Query: 1   MDDDALNMRNWGYYEPSFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFHPRD 60
           MDDD LNM NWGYYEP   GHLGLQLM  M   +RDTKPFLPGRDP +++GANG FHPRD
Sbjct: 55  MDDDVLNMPNWGYYEPFRGGHLGLQLMPGM--TERDTKPFLPGRDPAMLMGANGTFHPRD 112

Query: 61  CVVSEASIPMNYMRDSWISQRDKFLNML-PSNPTFGVLPETSGAHSLQMLQPPPNMSRDD 119
           CVVSEA +P+NY+RDSWI+QRD+F +M  P+NP + VLPETSGA +L+++QPP + SRD+
Sbjct: 113 CVVSEAPMPLNYVRDSWINQRDRFFHMQQPTNPNYAVLPETSGAPNLKIIQPP-DTSRDE 171

Query: 120 RLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKPKKPKDNNGTAVQRVK 179
           +           V +VEE VVK E    KKR   GA   PKAKKP+KPKDN+   VQR K
Sbjct: 172 K-----------VDRVEEVVVKKELGKSKKRHTKGALSTPKAKKPRKPKDNSNVPVQRAK 220

Query: 180 PAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMST 239
           P KK+M++VINGIDMDIS +PIPVCSCTGAPQQCYRWGCGGWQSACCTTNVS+YPLPMS 
Sbjct: 221 PPKKTMELVINGIDMDISDLPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSM 280

Query: 240 KRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
           KRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDL+THWARHGTNKFVTIR
Sbjct: 281 KRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
TAIR|locus:2823945	279	BPC2 "basic pentacysteine 2" [	0.928	0.971	0.576	1.4e-85
TAIR|locus:2045842	283	BPC1 "basic pentacysteine1" [A	0.934	0.964	0.582	6.4e-83
UNIPROTKB|Q8GUC3	350	BBR "Protein Barley B recombin	0.660	0.551	0.559	6.8e-67
TAIR|locus:2053086	296	BPC4 "basic pentacysteine 4" [	0.373	0.368	0.522	3.5e-36
TAIR|locus:2162291	342	BPC6 "basic pentacysteine 6" [	0.376	0.321	0.562	1.2e-33

TAIR|locus:2823945 BPC2 "basic pentacysteine 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 173/300 (57%), Positives = 216/300 (72%)

Query:     1 MDDDALNMRNWGYYEPS---FKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAFH 57
             MDDD    RNWGYYEP+   FKG+LGLQLMST   +DR+TKPFLPGRDPN+M+G NG++H
Sbjct:     1 MDDDGF--RNWGYYEPAAATFKGNLGLQLMST---IDRNTKPFLPGRDPNLMMGPNGSYH 55

Query:    58 PRDCVVSEASIPMNYMRDSWISQ-RDKFLNMLP---SNPTFG-VLPETSGAHSLQMLQPP 112
              +     E  I M+Y   +WI+Q +DKF NMLP   + P +G VLPETS A S+QM    
Sbjct:    56 HQ-----EPPIHMSY---NWINQQKDKFFNMLPVTTATPNYGNVLPETSSAPSMQM-NLH 106

Query:   113 PNMSRDDRLAPDRVAPDRIXXXXXXXXXXTEGAPVKKRQGGGASXXXXXXXXXXXXDNNG 172
              ++  ++   P ++  + +            G+  K ++                 +NN 
Sbjct:   107 HHLQTEEN--PVKLEEEIVVQTKKRKTNAKAGSTPKAKKPRKPKDENSNNN-----NNNN 159

Query:   173 TAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSM 232
             T V RVKPAKKS+D+VING+ MDISG+P+P+C+CTGAPQQCYRWGCGGWQSACCTTN+SM
Sbjct:   160 TNVTRVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISM 219

Query:   233 YPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
             +PLPMSTKRRGARI+GRKMSQGAFKKVLEKLA++G+NF NPIDL++HWARHGTNKFVTIR
Sbjct:   220 HPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 279

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;IPI

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

TAIR|locus:2045842 BPC1 "basic pentacysteine1" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 176/302 (58%), Positives = 210/302 (69%)

Query:     1 MDDDALNMRNWGYYEP----SFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNIMIGANGAF 56
             MDDD    RNWGYYEP    SFKG+LGLQLMST   +DR+TKPFLPGR+ N+MIG+NG++
Sbjct:     1 MDDDGF--RNWGYYEPAAASSFKGNLGLQLMST---IDRNTKPFLPGRESNLMIGSNGSY 55

Query:    57 HPRDCVVSEASIPMNYMRDSWISQ-RD-KFLNMLP-SNPTFG-VLPETSGAHSLQML-QP 111
             H R+         MNY   SWI+Q +D KF NMLP S P++  VL ETSG++S+QM+ QP
Sbjct:    56 HSREQ-------DMNY---SWINQPKDNKFFNMLPISTPSYSNVLSETSGSNSIQMIHQP 105

Query:   112 PPNMSRDDRLAPDRVAPDRIXXXXXXXXXXTEGAPVKKRQGGGASXXXXXXXXXXXXDNN 171
               N SR +       AP             +   P   +    A             +NN
Sbjct:   106 VLNSSRFEENPIPPPAPCEEQTGKKRKMRGSIATPTVPK----AKKMRKPKEERDVTNNN 161

Query:   172 -GTAVQRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNV 230
                  QRVKP KKS+D+VING+ MDISG+P+PVC+CTG PQQCYRWGCGGWQSACCTTN+
Sbjct:   162 VQQQQQRVKPVKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNI 221

Query:   231 SMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVT 290
             S+YPLPMSTKRRGARI+GRKMSQGAFKKVLEKL+ EGY+F N IDL++HWARHGTNKFVT
Sbjct:   222 SVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKSHWARHGTNKFVT 281

Query:   291 IR 292
             IR
Sbjct:   282 IR 283

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

UNIPROTKB|Q8GUC3 BBR "Protein Barley B recombinant" [Hordeum vulgare (taxid:4513)]

 Score = 570 (205.7 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
 Identities = 117/209 (55%), Positives = 140/209 (66%)

Query:    91 NPT-FGVLPETSGAHSLQMLQPP-PNMSRDDRLAPDRVAPDRIXXXXXXXXXXTEGAPVK 148
             +PT FG++P+  GAH+LQM+QP  P +  ++++ P  V    +              PVK
Sbjct:   151 HPTGFGMMPDARGAHTLQMMQPQEPPVPDEEKITPPLVEDHSVVGSK---------PPVK 201

Query:   149 KRQGGGASXXXXXXX--XXXXXDNNGTAVQRVKPAK---KSMDVVINGIDMDISGIPIPV 203
             KRQ G                   +G    R   ++   K +++VINGID DIS IP PV
Sbjct:   202 KRQQGRQPKVPKPKKPKKDATPGEDGAPKARAPRSRGPLKPVEMVINGIDFDISRIPTPV 261

Query:   204 CSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKL 263
             CSCTGAPQQCYRWG GGWQSACCTT++S YPLPM+TKRRGARIAGRKMSQGAFKKVLEKL
Sbjct:   262 CSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKL 321

Query:   264 AAEGYNFANPIDLRTHWARHGTNKFVTIR 292
             A EGYN  NPIDL+T WA+HGTNKFVTIR
Sbjct:   322 AGEGYNLNNPIDLKTFWAKHGTNKFVTIR 350

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2053086 BPC4 "basic pentacysteine 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 57/109 (52%), Positives = 84/109 (77%)

Query:   184 SMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRG 243
             S DV +N +  D + +P+P+CSCTG+ +QCY+WG GGWQS+CCTT +S YPLP    +R 
Sbjct:   188 SQDVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRH 247

Query:   244 ARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
             +R+ GRKMS   F ++L +L+AEGY+ + P+DL+ +WARHGTN+++TI+
Sbjct:   248 SRMGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWARHGTNRYITIK 296

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

TAIR|locus:2162291 BPC6 "basic pentacysteine 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 63/112 (56%), Positives = 87/112 (77%)

Query:   183 KSMDVV-INGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKR 241
             KS ++V +N +  D + +P PVCSCTG  +QCY+WG GGWQS+CCTT +SMYPLP    +
Sbjct:   231 KSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNK 290

Query:   242 RGARIAGRKMSQGAFKKVLEKLAAEGYN-FANPIDLRTHWARHGTNKFVTIR 292
             R AR+ GRKMS  AF K+L +LAAEG++  +NP+DL+ HWA+HGTN+++TI+
Sbjct:   291 RHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      292       270   0.00097  114 3  11 22  0.48    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  218 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.88u 0.11s 21.99t   Elapsed:  00:00:01
  Total cpu time:  21.88u 0.11s 21.99t   Elapsed:  00:00:01
  Start:  Mon May 20 17:44:14 2013   End:  Mon May 20 17:44:15 2013

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0DH88	BBRA_ORYSJ	No assigned EC number	0.4710	0.9828	0.8416	yes	no
P0DH89	BBRB_ORYSJ	No assigned EC number	0.4710	0.9828	0.8416	yes	no
Q9SKD0	BPC1_ARATH	No assigned EC number	0.5928	0.9178	0.9469	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BBR/BPC2 SubName- Full=GAGA-motif binding transcriptional activator; (279 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
pfam06217	301	pfam06217, GAGA_bind, GAGA binding protein-like fa	1e-121

>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family

 Score =  348 bits (894), Expect = e-121
 Identities = 160/318 (50%), Positives = 193/318 (60%), Gaps = 43/318 (13%)

Query: 1   MDDDA-LNMRNWGYYEP-----SFKGHLGLQLMSTMPMVDRDTKPFLPGRDPNI-MIGAN 53
           MDDD  LN+RNWGYY       SFK +LGLQLMS++   +RD KP    R+ N+ +    
Sbjct: 1   MDDDGHLNIRNWGYYFEPAQAPSFKSNLGLQLMSSIA--ERDAKP----RERNLALSEKK 54

Query: 54  GAFHPRDCVVSEASIPMNY-MRDSWISQR--------DKFLNMLP----SNPTFGVLPET 100
            A+  RD         M +  RD+WI++R        +KF  + P      P  G+LP T
Sbjct: 55  AAYAERD---------MAFLQRDAWIAERNNALMERDNKFAALQPVENSLPPGCGILPGT 105

Query: 101 SGAHSLQMLQPPPNMSRDDRLAPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPK 160
            G H LQML  P     D+      +    + P    P    E    KK Q     K PK
Sbjct: 106 KGIHHLQMLHHPQ--LGDNPYGTREMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPK 163

Query: 161 AKKPKK----PKDNNGTAV--QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCY 214
            KKPKK       +        R KP  KS D+VING+ MDISG+P+PVCSCTGAP+QCY
Sbjct: 164 PKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQDLVINGVSMDISGMPVPVCSCTGAPRQCY 223

Query: 215 RWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPI 274
           +WG GGWQSACCTT +SMYPLPMSTKRRGARIAGRKMS GAFKK+LE+LAAEGY+ +NPI
Sbjct: 224 KWGNGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSGGAFKKLLERLAAEGYDLSNPI 283

Query: 275 DLRTHWARHGTNKFVTIR 292
           DL+ HWA+HGTNKFVTIR
Sbjct: 284 DLKDHWAKHGTNKFVTIR 301

This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
PF06217	301	GAGA_bind: GAGA binding protein-like family; Inter	100.0

>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []

Probab=100.00  E-value=7e-123  Score=852.46  Aligned_cols=270  Identities=57%  Similarity=0.990  Sum_probs=234.2

Q ss_pred             CCcCcCCCcCcccccCC--CCCCccccccCCCCCCCCCCCCCCCCCCCCc-eecCCCCCCCCCcCCCCCCccccc-cccc
Q 022801            1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSTMPMVDRDTKPFLPGRDPNI-MIGANGAFHPRDCVVSEASIPMNY-MRDS   76 (292)
Q Consensus         1 MDD~~lniRNWGyyEp~--~kg~LGLQLMSs~p~~drdtKpfl~~r~~~l-m~~~ng~~h~Rd~gv~e~~~pM~y-~rd~   76 (292)
                      ||||+...||||||||.  +|+||||||||+  |+|||+++    ++.++ |.+.+++||+||         |+| +||+
T Consensus         1 MDddg~~~R~wg~ye~~~s~K~hLGLqlMs~--maERDaai----~er~~al~ekk~a~aeRD---------ma~~qRD~   65 (301)
T PF06217_consen    1 MDDDGSLERNWGYYEPQNSMKGHLGLQLMSI--MAERDAAI----RERNLALSEKKAAFAERD---------MAYLQRDA   65 (301)
T ss_pred             CCCccccccCcccccccccccccccceeecc--ccccCccc----ccccchhccccccccchh---------hhhhhhhh
Confidence            89654444999999997  799999999999  56999999    56665 789999999997         999 8899


Q ss_pred             cccc-------cc-cccccCCCCCC--------CCcccCCCcccccccc-----CCCCCCCccccCCCCCCCCCCCCCcc
Q 022801           77 WISQ-------RD-KFLNMLPSNPT--------FGVLPETSGAHSLQML-----QPPPNMSRDDRLAPDRVAPDRIVPKV  135 (292)
Q Consensus        77 Wi~q-------re-Kfln~~p~n~~--------y~~~pets~a~~mQm~-----q~~p~~~k~e~~~~~~~~p~~~p~~~  135 (292)
                      ||+|       || +|+++++.|++        |+++|+|+.+|++|++     ++++....++.+       ....++.
T Consensus        66 aiaern~ai~ERd~a~a~l~~~~~~~n~~~p~~~~~~~~tk~~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~~i~  138 (301)
T PF06217_consen   66 AIAERNNAIMERDNAIAALQPRNNNGNHHCPPGCGILPGTKHIHHMQQHHHPQLQPPPYSTREMHN-------IDAPPIS  138 (301)
T ss_pred             hhccchhhcccchhhhhhccccCCCccccCCCCCcccCCCccCCCcccccccccCCCCCCcccccc-------ccccccc
Confidence            9999       45 99999998774        8999999999999994     332333333321       0122333


Q ss_pred             cCCccccCCCCccccCCCCCCCCCCCCCCCC----CCCCCCCcc--ccccCcccccceeccceecccCCCCccceeecCC
Q 022801          136 EEPVVKTEGAPVKKRQGGGASKMPKAKKPKK----PKDNNGTAV--QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGA  209 (292)
Q Consensus       136 e~~~v~~~~~~~KKr~~~~~~k~pKaKKpKK----Pkd~~~~~~--~R~k~~~k~~~~~in~i~~d~s~~P~PvCsCTG~  209 (292)
                      ++..+.+..++.||+++++++|++|+||+||    ++++.+.++  +|+|.+||++||+||||+||+|+||||||||||+
T Consensus       139 ~~~~~~~~~~~~k~~~~~~~~k~~k~~k~kk~~~~~~~~~~~~~~~~~~k~~~k~~dl~in~i~~D~s~mP~PvCSCTG~  218 (301)
T PF06217_consen  139 TAPPESKKSKPPKKRKRPKSPKSPKPKKPKKKPSVPNRNVNPPGSDQRSKPEKKNQDLVINGINFDESTMPIPVCSCTGV  218 (301)
T ss_pred             cCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccccccccccccccccccccccceeeccCCCCCcccccCCC
Confidence            4455556667888999999999999999998    444554443  8999999999999999999999999999999999


Q ss_pred             CcceeeccCCcccccccccccccccCCCCCCCCCccccccccChHHHHHHHHHHHhcccCCCCCccchhhhhhcCCccee
Q 022801          210 PQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFV  289 (292)
Q Consensus       210 ~qqCYrWG~GGWQSaCCTt~iS~yPLP~~~~rrgaRi~GRKMS~gaf~klL~rLa~eg~~ls~piDLk~~WAkHGTNk~v  289 (292)
                      |||||||||||||||||||+||||||||+||||||||||||||+|||+|||+|||+||||||+|||||+|||||||||||
T Consensus       219 pqqCYrWG~GGWQSaCCTT~iSmYPLPm~~nkRgaRi~GRKMS~gAF~KlL~rLAaEGydls~PiDLK~hWAKHGTNryv  298 (301)
T PF06217_consen  219 PQQCYRWGNGGWQSACCTTTISMYPLPMSPNKRGARIGGRKMSGGAFKKLLERLAAEGYDLSNPIDLKDHWAKHGTNRYV  298 (301)
T ss_pred             CccccccCCCccccccccccccccccCCCCCCCccccccccccHHHHHHHHHHHHhcccccCCccchHHHHHhcCCcceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeC
Q 022801          290 TIR  292 (292)
Q Consensus       290 tik  292 (292)
                      |||
T Consensus       299 TIk  301 (301)
T PF06217_consen  299 TIK  301 (301)
T ss_pred             ecC
Confidence            998

It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00