Citrus Sinensis ID: 022804

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MMHNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
ccccccccccccEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHcccccccEEEccccccccccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEccccccccEEEEccccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccccccc
cccHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEEEEccccccHHHHEEEEEcccHcccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccEcccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccc
MMHNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVseeqkldwsdmfyiatlplhlrktdlfhklppslRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQsmrmnyyppcpqpdkvigfsphsDADALTILLQLddtqglqirnqgrwvpvkplpnafvinIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSsridselgpapsligpsnpaifrrmpLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
MMHNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIrnqgrwvpvkplPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDselgpapsligpsnPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
MMHNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
***NFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKL***************************************************YYP*C****KVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRI**********I***NPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDL*****
*MHNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKK**Q****HEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFM**D******
MMHNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
**HNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDL*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMHNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.931 0.759 0.576 6e-94
D4N501364 Probable 2-oxoglutarate/F N/A no 0.931 0.747 0.572 2e-91
D4N502360 Codeine O-demethylase OS= N/A no 0.931 0.755 0.538 3e-88
D4N500364 Thebaine 6-O-demethylase N/A no 0.931 0.747 0.547 2e-86
A2A1A0352 S-norcoclaurine synthase N/A no 0.910 0.755 0.427 2e-62
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.900 0.728 0.370 3e-42
Q9LHN8361 Feruloyl CoA ortho-hydrox no no 0.904 0.731 0.364 3e-42
Q9LTH8364 1-aminocyclopropane-1-car no no 0.900 0.722 0.353 5e-39
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.880 0.767 0.345 8e-39
Q9M547334 Flavonol synthase/flavano N/A no 0.856 0.748 0.335 1e-38
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  343 bits (881), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 158/274 (57%), Positives = 210/274 (76%), Gaps = 2/274 (0%)

Query: 14  QVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDM 73
           Q++NHG+ SS L+K+K EI++FF LP EEKKK WQ  D  EGFGQ FVVSE+QKLDW+D+
Sbjct: 85  QLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADL 144

Query: 74  FYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLF 133
           F+    P+ LRK  LF KLP   R+TLE YS+E++ +A  ++  MA+AL +  EE+  LF
Sbjct: 145 FFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLF 204

Query: 134 SD--GVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKP 191
            D   VQSMRMNYYPPCPQPD+VIG +PHSD+  LT+L+Q++D +GLQI+  G+WVPVKP
Sbjct: 205 DDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKP 264

Query: 192 LPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGP 251
           LPNAF++NIGD++EI++NG YRSIEHR +VNS KERLSIATF++  +  E+GPA SL+  
Sbjct: 265 LPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVER 324

Query: 252 SNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRV 285
              A F+R+ ++EY    F+R L+GKAYLD +R+
Sbjct: 325 QKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
225462503369 PREDICTED: protein SRG1-like [Vitis vini 0.934 0.739 0.776 1e-129
297740613 492 unnamed protein product [Vitis vinifera] 0.934 0.554 0.776 1e-128
255557477363 Flavonol synthase/flavanone 3-hydroxylas 0.934 0.752 0.776 1e-128
224106557363 predicted protein [Populus trichocarpa] 0.931 0.749 0.753 1e-125
449433644364 PREDICTED: protein SRG1-like [Cucumis sa 0.934 0.75 0.739 1e-119
359483586365 PREDICTED: LOW QUALITY PROTEIN: protein 0.934 0.747 0.717 1e-118
255584517368 Flavonol synthase/flavanone 3-hydroxylas 0.931 0.739 0.694 1e-114
225462507366 PREDICTED: protein SRG1 [Vitis vinifera] 0.955 0.762 0.602 1e-102
147776748 395 hypothetical protein VITISV_032872 [Viti 0.945 0.698 0.619 1e-102
363807040358 uncharacterized protein LOC100777264 [Gl 0.931 0.759 0.632 1e-101
>gi|225462503|ref|XP_002268794.1| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 212/273 (77%), Positives = 249/273 (91%)

Query: 14  QVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDM 73
           QV+NHGVSSSLLE+ K E+++FF+LP EEKKKLWQ  DNHEGFGQLFVVSEEQ+LDWSDM
Sbjct: 90  QVVNHGVSSSLLEEFKGEVQDFFELPLEEKKKLWQQPDNHEGFGQLFVVSEEQRLDWSDM 149

Query: 74  FYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLF 133
           FY+ TLP +LRK+D+F KLP  LRETLE+YS EMKKLAMTIL  M KAL+M  EE+RD+F
Sbjct: 150 FYLTTLPFNLRKSDIFQKLPQKLRETLEAYSVEMKKLAMTILSQMTKALKMKAEEIRDMF 209

Query: 134 SDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLP 193
           SDGVQSMRMNYYPPCP+PD  IGF+PHSDADALTIL QL+DT+GLQIR +GRWVPVKPLP
Sbjct: 210 SDGVQSMRMNYYPPCPEPDMTIGFAPHSDADALTILFQLNDTEGLQIRKEGRWVPVKPLP 269

Query: 194 NAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSN 253
           NAFV+NIGDIMEIVSNGIY+SIEHRA+VNS+K+RLS+ATF+SS +DSELGPAPSLI P N
Sbjct: 270 NAFVVNIGDIMEIVSNGIYQSIEHRAMVNSAKKRLSVATFFSSNLDSELGPAPSLISPQN 329

Query: 254 PAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVD 286
           PAIF+R+P+E+YFK+FFARRL+GK+YL FM++D
Sbjct: 330 PAIFQRVPIEKYFKDFFARRLDGKSYLKFMKID 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297740613|emb|CBI30795.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557477|ref|XP_002519769.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223541186|gb|EEF42742.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224106557|ref|XP_002314207.1| predicted protein [Populus trichocarpa] gi|222850615|gb|EEE88162.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449433644|ref|XP_004134607.1| PREDICTED: protein SRG1-like [Cucumis sativus] gi|449479203|ref|XP_004155534.1| PREDICTED: protein SRG1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359483586|ref|XP_003632982.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584517|ref|XP_002532986.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223527232|gb|EEF29394.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147776748|emb|CAN72414.1| hypothetical protein VITISV_032872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|363807040|ref|NP_001242069.1| uncharacterized protein LOC100777264 [Glycine max] gi|255645137|gb|ACU23067.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.931 0.759 0.576 4.3e-86
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.931 0.764 0.567 2.4e-83
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.934 0.756 0.558 1.3e-82
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.921 0.762 0.556 5.8e-82
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.931 0.764 0.547 1.2e-81
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.972 0.780 0.429 2.7e-61
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.863 0.713 0.396 8e-53
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.917 0.722 0.355 1.5e-49
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.880 0.738 0.376 5.2e-49
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.842 0.706 0.372 2e-47
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 158/274 (57%), Positives = 210/274 (76%)

Query:    14 QVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDM 73
             Q++NHG+ SS L+K+K EI++FF LP EEKKK WQ  D  EGFGQ FVVSE+QKLDW+D+
Sbjct:    85 QLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADL 144

Query:    74 FYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLF 133
             F+    P+ LRK  LF KLP   R+TLE YS+E++ +A  ++  MA+AL +  EE+  LF
Sbjct:   145 FFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLF 204

Query:   134 SD--GVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKP 191
              D   VQSMRMNYYPPCPQPD+VIG +PHSD+  LT+L+Q++D +GLQI+  G+WVPVKP
Sbjct:   205 DDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKP 264

Query:   192 LPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGP 251
             LPNAF++NIGD++EI++NG YRSIEHR +VNS KERLSIATF++  +  E+GPA SL+  
Sbjct:   265 LPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVER 324

Query:   252 SNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRV 285
                A F+R+ ++EY    F+R L+GKAYLD +R+
Sbjct:   325 QKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39224SRG1_ARATHNo assigned EC number0.57660.93150.7597yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.921
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007247001
SubName- Full=Chromosome undetermined scaffold_186, whole genome shotgun sequence; (298 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-137
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 4e-98
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-83
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-69
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 9e-64
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 3e-61
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 4e-60
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-57
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-57
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-57
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-53
PLN02704335 PLN02704, PLN02704, flavonol synthase 4e-51
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 7e-50
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-46
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-44
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-41
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 8e-39
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 9e-39
PLN02485329 PLN02485, PLN02485, oxidoreductase 6e-35
PLN02997325 PLN02997, PLN02997, flavonol synthase 5e-34
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-33
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 8e-33
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-32
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-32
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 5e-31
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-20
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-17
cd02796103 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain- 0.004
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  392 bits (1008), Expect = e-137
 Identities = 161/273 (58%), Positives = 209/273 (76%), Gaps = 1/273 (0%)

Query: 14  QVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDM 73
           Q++NHG+ SS L+K+K EI++FF LP EEKKKLWQ     EGFGQ FVVSE+QKLDW+DM
Sbjct: 85  QLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADM 144

Query: 74  FYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLF 133
           F++   P+ LRK  LF KLP   R+TLE+YSAE+K +A  +   MA AL +  EEM  LF
Sbjct: 145 FFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLF 204

Query: 134 SDGV-QSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPL 192
            D + QS+RMNYYPPCPQPD+VIG +PHSDA  LTILLQ+++ +GLQI+  G+WV VKPL
Sbjct: 205 DDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPL 264

Query: 193 PNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPS 252
           PNA V+N+GDI+EI++NG YRSIEHR +VNS KERLS+ATF+++ +  E+GPA SL+   
Sbjct: 265 PNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQ 324

Query: 253 NPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRV 285
             A+F+ +  +EYF   F+R L+GKAYLD MR+
Sbjct: 325 KAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|239196 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02947374 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02997325 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02704335 flavonol synthase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.81
PLN03176120 flavanone-3-hydroxylase; Provisional 99.55
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.01
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 96.29
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 96.27
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.99
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 94.9
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 92.49
TIGR02466201 conserved hypothetical protein. This family consis 91.5
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 85.39
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=8.4e-80  Score=568.06  Aligned_cols=283  Identities=58%  Similarity=0.999  Sum_probs=261.5

Q ss_pred             HhhhhhhccEEEEEcCCCCHHHHHHHHHHHHHhhCCCHHHHhhccccCCCccccccCccccccccCCcccccccccCCCC
Q 022804            3 HNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLH   82 (292)
Q Consensus         3 ~~~A~~~~Gff~l~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~   82 (292)
                      .++||++||||||+||||+.++++++++.+++||+||.|+|+++...++.++||+........+..||+|.+.+...|..
T Consensus        74 l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~  153 (357)
T PLN02216         74 LDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVR  153 (357)
T ss_pred             HHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcc
Confidence            36799999999999999999999999999999999999999999875566889977544444567899999988766655


Q ss_pred             cccCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhhhHhhhcc-cccceeeeecCCCCCCCCcccccCCC
Q 022804           83 LRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSD-GVQSMRMNYYPPCPQPDKVIGFSPHS  161 (292)
Q Consensus        83 ~~~~~~wP~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~-~~~~lr~~~Yp~~~~~~~~~g~~~Ht  161 (292)
                      ...+|.||+.+++||+.+++|+++|.+|+.+||++||++|||++++|.+.+.. ..+.||++|||||++++..+|+++||
T Consensus       154 ~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~Ht  233 (357)
T PLN02216        154 LRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHS  233 (357)
T ss_pred             cccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcc
Confidence            67789999999999999999999999999999999999999999999998876 45789999999999988899999999


Q ss_pred             CCCceEEEEeCCCCCceEEEeCCeeEEccCCCCeEEEEechhhHHHhCCccccccceeecCCCCCeEEEEeeecCCCCCe
Q 022804          162 DADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSE  241 (292)
Q Consensus       162 D~~~lTlL~q~~~~~GLqV~~~g~W~~V~p~~g~lvVnvGd~l~~~Tng~~~s~~HRVv~~~~~~R~Si~~F~~p~~d~~  241 (292)
                      |+|+||||+|+++++||||+++|+|++|+|+||++||||||+||+||||+|||++|||+.++.++||||+||+.|+.|++
T Consensus       234 D~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~  313 (357)
T PLN02216        234 DAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKE  313 (357)
T ss_pred             cCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCe
Confidence            99999999996579999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             eecCCCCCCCCCCCCCCCcCHHHHHHHHHHhhcCCccccccccc
Q 022804          242 LGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRV  285 (292)
Q Consensus       242 i~p~~~~~~~~~p~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~  285 (292)
                      |+|+++|+++++|++|++++++||++.++++...+++.++.++|
T Consensus       314 i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        314 IGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             EeCcHHHcCCCCCCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            99999999999999999999999999999998889998888775

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-36
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-36
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-35
1w9y_A319 The Structure Of Acc Oxidase Length = 319 5e-31
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-13
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-07
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 134/251 (53%), Gaps = 7/251 (2%)
Query: 13  VQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVADNHEGFGQLFVVSEEQKLDW 70
           + +INHG+ + L+E++K   E FF L  EEK+K    Q     +G+G     +   +L+W
Sbjct: 79  MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEW 138
Query: 71  SDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMR 130
            D F+    P   R   ++ K P    E    Y+  ++ LA  +   ++  L ++ + + 
Sbjct: 139 EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 198
Query: 131 DL---FSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWV 187
                  + +  M++NYYP CPQP+  +G   H+D  ALT +L  +   GLQ+  +G+WV
Sbjct: 199 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWV 257
Query: 188 PVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDS-ELGPAP 246
             K +P++ V++IGD +EI+SNG Y+SI HR LVN  K R+S A F     D   L P P
Sbjct: 258 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 317
Query: 247 SLIGPSNPAIF 257
            ++   +PA F
Sbjct: 318 EMVSVESPAKF 328
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-132
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-130
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 4e-81
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-70
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-69
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 8e-66
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  378 bits (973), Expect = e-132
 Identities = 88/286 (30%), Positives = 141/286 (49%), Gaps = 17/286 (5%)

Query: 6   FFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVADNHEGFGQLFVVS 63
                    +INHG+ + L+E++K   E FF L  EEK+K    Q     +G+G     +
Sbjct: 79  VM------HLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132

Query: 64  EEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALR 123
              +L+W D F+    P   R   ++ K P    E    Y+  ++ LA  +   ++  L 
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192

Query: 124 MDGEEMRDLF---SDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQI 180
           ++ + +        + +  M++NYYP CPQP+  +G   H+D  ALT +L  +   GLQ+
Sbjct: 193 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQL 251

Query: 181 RNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDS 240
             +G+WV  K +P++ V++IGD +EI+SNG Y+SI HR LVN  K R+S A F     D 
Sbjct: 252 FYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDK 311

Query: 241 -ELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRV 285
             L P P ++   +PA F        F +    +L GK   + +  
Sbjct: 312 IVLKPLPEMVSVESPAKFPPR----TFAQHIEHKLFGKEQEELVSE 353
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 96.35
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 95.22
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 93.1
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 91.24
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 90.58
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 90.57
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 90.35
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 90.05
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-77  Score=551.63  Aligned_cols=276  Identities=30%  Similarity=0.547  Sum_probs=255.0

Q ss_pred             HhhhhhhccEEEEEcCCCCHHHHHHHHHHHHHhhCCCHHHHhhccccC--CCccccccCccccccccCCcccccccccCC
Q 022804            3 HNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVA--DNHEGFGQLFVVSEEQKLDWSDMFYIATLP   80 (292)
Q Consensus         3 ~~~A~~~~Gff~l~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~   80 (292)
                      .++||++||||||+||||+.++++++++.+++||+||.|+|+++....  ..++||+........+..||+|.|++...|
T Consensus        70 l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p  149 (356)
T 1gp6_A           70 LKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYP  149 (356)
T ss_dssp             HHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEES
T ss_pred             HHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCC
Confidence            368999999999999999999999999999999999999999998754  368999876555556678999999988766


Q ss_pred             CCcccCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhhhHhhhc---ccccceeeeecCCCCCCCCcccc
Q 022804           81 LHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFS---DGVQSMRMNYYPPCPQPDKVIGF  157 (292)
Q Consensus        81 ~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~  157 (292)
                      .....+|.||+.+|+||+.+++|+++|.+|+.+||++||++|||++++|.+.+.   .+.+.||++|||||++++..+|+
T Consensus       150 ~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~  229 (356)
T 1gp6_A          150 EEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGV  229 (356)
T ss_dssp             GGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSE
T ss_pred             ccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCc
Confidence            444578999999999999999999999999999999999999999999999987   47788999999999998888999


Q ss_pred             cCCCCCCceEEEEeCCCCCceEEEeCCeeEEccCCCCeEEEEechhhHHHhCCccccccceeecCCCCCeEEEEeeecCC
Q 022804          158 SPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSR  237 (292)
Q Consensus       158 ~~HtD~~~lTlL~q~~~~~GLqV~~~g~W~~V~p~~g~lvVnvGd~l~~~Tng~~~s~~HRVv~~~~~~R~Si~~F~~p~  237 (292)
                      ++|||+|+||||+| ++++||||+++|+|++|+|.||++||||||+||+||||+|||++|||+.+++++|||++||++|+
T Consensus       230 ~~HtD~g~lTlL~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~  308 (356)
T 1gp6_A          230 EAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPP  308 (356)
T ss_dssp             EEECCCSSEEEEEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECC
T ss_pred             CCccCCCeEEEEEE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCC
Confidence            99999999999999 57999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             CCC-eeecCCCCCCCCCCCCCCCcCHHHHHHHHHHhhcCCccc
Q 022804          238 IDS-ELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAY  279 (292)
Q Consensus       238 ~d~-~i~p~~~~~~~~~p~~y~~~~~~d~~~~~~~~~~~~~~~  279 (292)
                      .|+ +|+|+++|+++++|++|+++|++||+..+++..++++..
T Consensus       309 ~d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          309 KDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             TTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             CCCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            999 999999999999999999999999999999888766543
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 292
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-52
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 8e-49
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 5e-42
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-29
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  172 bits (436), Expect = 4e-52
 Identities = 87/276 (31%), Positives = 139/276 (50%), Gaps = 11/276 (3%)

Query: 12  CVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVADNHEGFGQLFVVSEEQKLD 69
            + +INHG+ + L+E++K   E FF L  EEK+K    Q     +G+G     +   +L+
Sbjct: 78  VMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLE 137

Query: 70  WSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEM 129
           W D F+    P   R   ++ K P    E    Y+  ++ LA  +   ++  L ++ + +
Sbjct: 138 WEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRL 197

Query: 130 RDLFSDGVQS---MRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRW 186
                   +    M++NYYP CPQP+  +G   H+D  ALT  +  +   GLQ+  +G+W
Sbjct: 198 EKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-FILHNMVPGLQLFYEGKW 256

Query: 187 VPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSE-LGPA 245
           V  K +P++ V++IGD +EI+SNG Y+SI HR LVN  K R+S A F     D   L P 
Sbjct: 257 VTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPL 316

Query: 246 PSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLD 281
           P ++   +PA F        F +    +L GK   +
Sbjct: 317 PEMVSVESPAKFPPRT----FAQHIEHKLFGKEQEE 348
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 93.68
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 93.49
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=7.8e-73  Score=510.93  Aligned_cols=269  Identities=25%  Similarity=0.559  Sum_probs=239.3

Q ss_pred             HhhhhhhccEEEEEcCCCCHHHHHHHHHHHHHhhCCCHHHHhhccccCCCccccccCccccccccCCcccccccccCCCC
Q 022804            3 HNFFFKLIKCVQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLH   82 (292)
Q Consensus         3 ~~~A~~~~Gff~l~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~   82 (292)
                      .++||+++|||||+||||+.++++++++.+++||+||.|+|+++......+.||...     ....||+|.|.+...+  
T Consensus        23 l~~A~~~~GFF~l~nHGI~~~li~~~~~~~~~fF~lp~e~K~k~~~~~~~~~g~~~~-----~~~~d~~e~~~~~~~~--   95 (307)
T d1w9ya1          23 IKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAE-----VTDMDWESTFFLKHLP--   95 (307)
T ss_dssp             HHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----GGGCCCCEEEEEEEES--
T ss_pred             HHHHHHcCeEEEEEcCCCCHHHHHHHHHHHHHHHhCcHHHhhhhhcCCCCCcCcccc-----ccccChhhhccccccc--
Confidence            357999999999999999999999999999999999999999987644456667542     2346899998876544  


Q ss_pred             cccCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhhhHhhhc---ccccceeeeecCCCCCCCCcccccC
Q 022804           83 LRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFS---DGVQSMRMNYYPPCPQPDKVIGFSP  159 (292)
Q Consensus        83 ~~~~~~wP~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~  159 (292)
                      ....+.||+.+++||+.+++|+++|.+|+.+|+++|+++||+++++|.+.+.   ...+.+|++||||+++++...|+++
T Consensus        96 ~~~~~~~~~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~  175 (307)
T d1w9ya1          96 ISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA  175 (307)
T ss_dssp             CCGGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCC
T ss_pred             ccCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHhhhhccccccccceecCCCCCccccccccccc
Confidence            3456789999999999999999999999999999999999999999998874   3467899999999999888899999


Q ss_pred             CCCCCceEEEEeCCCCCceEEEeCCeeEEccCCCCeEEEEechhhHHHhCCccccccceeecCCCCCeEEEEeeecCCCC
Q 022804          160 HSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRID  239 (292)
Q Consensus       160 HtD~~~lTlL~q~~~~~GLqV~~~g~W~~V~p~~g~lvVnvGd~l~~~Tng~~~s~~HRVv~~~~~~R~Si~~F~~p~~d  239 (292)
                      |||+|+||||+|++.++||||.++|+|++|+|.+|++|||+||+||+||||+||||.|||+.+++.+||||+||++|+.|
T Consensus       176 HtD~~~lTlL~q~~~~ggl~~~~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~d  255 (307)
T d1w9ya1         176 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSD  255 (307)
T ss_dssp             BCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTT
T ss_pred             ccccceeEEeeccCCCCeEEEecCCcEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCCC
Confidence            99999999999966689999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             CeeecCCCCCC---CCCCCCCCCcCHHHHHHHHHHhhcCCcc
Q 022804          240 SELGPAPSLIG---PSNPAIFRRMPLEEYFKEFFARRLNGKA  278 (292)
Q Consensus       240 ~~i~p~~~~~~---~~~p~~y~~~~~~d~~~~~~~~~~~~~~  278 (292)
                      ++|+|+|+|++   +++|++|+|||++||++.++++.+.+|+
T Consensus       256 ~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~~~~~~~~  297 (307)
T d1w9ya1         256 AVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKE  297 (307)
T ss_dssp             CEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHH
T ss_pred             CEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHhccCCccc
Confidence            99999999986   4679999999999999998888877654
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure