Citrus Sinensis ID: 022819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSIK
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEEccccccEEEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccEEEEEEcccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEEccEEEEEEEccccccccEEEcccEEEEcccccccccEEEEcccccccHHHHHHccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEcccccHHHHHHHccccEEccccccccHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEccHHHHHHccccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHccccccccccEEEccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEcHHHccccHHHHHHHHccccEcEEEEccccHHHHHHHHHcEHcccccc
Coil and Loop (DISEMBL)
mstsikqpqvITCKAAvawgagqplvveevevnppqpeeirIKVVCTslcrsditawetqaifprifgheasgivesvgpgvtefnegeHVLTVFIGEcktcrqcksdksntcevlglerrgvmhsdqqtrfsikgkpvyhycavssfsEYTVVHSGcavkvssiaplEKICLLSCglsaglgaawnvadiskgsTVVIFGLGTVGLSVAQGakargasriigvdtnpekcekAKAFgvteflnpndnnepVQQVIKRITdggadysfecigdTGMITTALQSCCDVRSIK
Flexible Loop (DISEMBL)
mstsikqpqvITCKAAVAWGAGQPLVVEEVevnppqpeeirIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECktcrqcksdksntcevlglerrgvmhsdqqtrfsikgkPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAqgakargasriigvdtnpeKCEKAKAFGvteflnpndnnepVQQVIKRITDGGADYSFECIGDTGMITTALqsccdvrsik
Low Complexity Region (SEG)
MSTSIKQPQVITCKAAVAWGAGQplvveevevnppqpeeIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIcllscglsaglgaaWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSIK
Disordered region (IsUnstruct)
********QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN***EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV****
Disordered Region (DISOPRED)
******Q***ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI*
Disordered Region (DISEMBL)
********QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSIK
Disordered Region (DISPRO)
*******PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q8LEB2	381	Alcohol dehydrogenase-lik	yes	no	0.979	0.748	0.768	1e-132
P25141	382	Alcohol dehydrogenase 1 O	N/A	no	0.955	0.727	0.597	4e-95
P14673	380	Alcohol dehydrogenase 1 O	N/A	no	0.975	0.747	0.582	6e-95
P14675	380	Alcohol dehydrogenase 3 O	N/A	no	0.975	0.747	0.582	7e-95
P14674	380	Alcohol dehydrogenase 2 O	N/A	no	0.955	0.731	0.588	2e-94
P48977	380	Alcohol dehydrogenase OS=	N/A	no	0.955	0.731	0.585	6e-94
P28032	380	Alcohol dehydrogenase 2 O	N/A	no	0.975	0.747	0.572	1e-93
P14219	379	Alcohol dehydrogenase 1 O	N/A	no	0.955	0.733	0.574	3e-92
P00333	379	Alcohol dehydrogenase 1 O	N/A	no	0.955	0.733	0.567	6e-92
Q2R8Z5	379	Alcohol dehydrogenase 1 O	no	no	0.955	0.733	0.567	2e-91

>sp|Q8LEB2|ADHL6_ARATH Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 219/285 (76%), Positives = 256/285 (89%)

Query: 2   STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA 61
           S+S +QPQVITC AAVAW AG+PLV+EEVEV+PPQP EIRIKVVCTSLCRSD++AWE+Q+
Sbjct: 5   SSSFEQPQVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQS 64

Query: 62  IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 121
           + PRIFGHEA+GIVES+G GVTEF +G+HVL VF GEC +CR C S KSN C+VLG+ER+
Sbjct: 65  LLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERK 124

Query: 122 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG 181
           G+MHSDQ+TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  +APL KICLLSCG++AG
Sbjct: 125 GLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAG 184

Query: 182 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
           LGAAWNVAD+ KGS+VVIFGLGTVGLSVAQGAK RGA++I+GVD NP K E+AK FGVT+
Sbjct: 185 LGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTD 244

Query: 242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           F+N ND +EP+ QVIKR+T GGAD+SFEC+GDTG+ TTALQSC D
Sbjct: 245 FINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSD 289

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|P25141|ADH1_PETHY Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1

 Score =  347 bits (891), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 169/283 (59%), Positives = 209/283 (73%), Gaps = 5/283 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPR 65
           QVI CKAAVAW AG+PLV+EEVEV PPQ  E+R+K++ TSLC +D+  WE +    +FPR
Sbjct: 8   QVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRLKILFTSLCHTDVYFWEAKGQTPLFPR 67

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVM 124
           IFGHEA GIVESVG GVT+   G+HVL VF GEC+ CR CKS++SN C++L +   RGVM
Sbjct: 68  IFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECQQCRHCKSEESNMCDLLRINTDRGVM 127

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
             D QTRFS  GKP+YH+   S+FSEYTV HSGC  K+   APL+K+C+LSCG+S GLGA
Sbjct: 128 IHDGQTRFSKDGKPIYHFVGTSTFSEYTVCHSGCVTKIDPQAPLDKVCVLSCGISTGLGA 187

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
             NVA  +KGSTV IFGLG VGL+ A+GA+  GASRIIGVD NP +   AK FGVTEF+N
Sbjct: 188 TLNVAKPTKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFNDAKKFGVTEFVN 247

Query: 245 PNDN-NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           P D+ ++PVQQVI  +TDGG D S EC G+   + +A +   D
Sbjct: 248 PKDHGDKPVQQVIAEMTDGGVDRSVECTGNVNAMISAFECVHD 290

This protein is responsible for the conversion of alcohols to aldehydes in plants and is important for NAD metabolism during anaerobic respiration.

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14673|ADH1_SOLTU Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1

 Score =  347 bits (890), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 169/290 (58%), Positives = 215/290 (74%), Gaps = 6/290 (2%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
           MST++ Q  VI CKAAVAW AG+PLV+EEV+V PPQ  E+R+K++ TSLC +D+  WE +
Sbjct: 1   MSTTVGQ--VIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAK 58

Query: 61  A---IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 117
               +FPRI GHEA+GIVESVG GVTE   G+HVL VF GECK C  CKS++SN C +L 
Sbjct: 59  GQNPVFPRILGHEAAGIVESVGEGVTELGPGDHVLPVFTGECKDCAHCKSEESNMCSLLR 118

Query: 118 LE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC 176
           +   RGVM +D Q+RFSI GKP+YH+   S+FSEYTVVH GC  K++ +APL+K+C+LSC
Sbjct: 119 INTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178

Query: 177 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
           G+S GLGA  NVA  +KGS+V IFGLG VGL+ A+GA+  GASRIIGVD N  + E+AK 
Sbjct: 179 GISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKK 238

Query: 237 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           FGVTEF+NP D ++PVQ+VI  +TDGG D S EC G    + +A +   D
Sbjct: 239 FGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHD 288

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14675|ADH3_SOLTU Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1

 Score =  347 bits (889), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 169/290 (58%), Positives = 215/290 (74%), Gaps = 6/290 (2%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
           MST++ Q  VI CKAAVAW AG+PLV+EEV+V PPQ  E+R+K++ TSLC +D+  WE +
Sbjct: 1   MSTTVGQ--VIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAK 58

Query: 61  A---IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 117
               +FPRI GHEA+GIVESVG GVTE   G+HVL VF GECK C  CKS++SN C +L 
Sbjct: 59  GQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLR 118

Query: 118 LE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC 176
           +   RGVM +D Q+RFSI GKP+YH+   S+FSEYTVVH GC  K++ +APL+K+C+LSC
Sbjct: 119 INTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178

Query: 177 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
           G+S GLGA  NVA  +KGS+V IFGLG VGL+ A+GA+  GASRIIGVD N  + E+AK 
Sbjct: 179 GISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKK 238

Query: 237 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           FGVTEF+NP D ++PVQ+VI  +TDGG D S EC G    + +A +   D
Sbjct: 239 FGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHD 288

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14674|ADH2_SOLTU Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1

 Score =  345 bits (886), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 166/282 (58%), Positives = 210/282 (74%), Gaps = 4/282 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPR 65
           QVI CKAAVAW AG+PLV+EEV+V PPQ  E+R+K++ TSLC +D+  WE +    +FPR
Sbjct: 7   QVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPR 66

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVM 124
           I GHEA+GIVESVG GVTE   G+HVL VF GECK C  CKS++SN C +L +   RGVM
Sbjct: 67  ILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVM 126

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
            +D Q+RFSI GKP+YH+   S+FSEYTVVH GC  K++ +APL+K+C+LSCG+S GLGA
Sbjct: 127 INDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGA 186

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
             NVA  +KGS+V IFGLG VGL+ A+GA+  GASRIIGVD N  + E+AK FGVTEF+N
Sbjct: 187 TLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVTEFVN 246

Query: 245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           P D ++PVQ+VI  +TDGG D S EC G    + +A +   D
Sbjct: 247 PKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHD 288

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P48977|ADH_MALDO Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1

 Score =  343 bits (881), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 165/282 (58%), Positives = 210/282 (74%), Gaps = 4/282 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPR 65
           QVI C+AAVAW AG+PLV+EEVEV PPQ  E+RIK++ TSLC +D+  WE +    +FPR
Sbjct: 7   QVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQNPLFPR 66

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVM 124
           I+GHEA GIVESVG GVT+   G+HVL VF GECK C  CKS++SN C++L +   RGVM
Sbjct: 67  IYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRINTDRGVM 126

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
            SD ++RFSIKGKP+YH+   S+FSEYTVVH GC  K++  APL+K+CLLSCG+S GLGA
Sbjct: 127 LSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGISTGLGA 186

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
             NVA   KGSTV +FGLG VGL+ A+GA+  GASRIIGVD + ++ E+AK FGVTEF+N
Sbjct: 187 TLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFGVTEFVN 246

Query: 245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           P  + +PVQ+VI  +T+ G D S EC G T  + +A +   D
Sbjct: 247 PKAHEKPVQEVIAELTNRGVDRSIECTGSTEAMISAFECVHD 288

Malus domestica (taxid: 3750)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P28032|ADH2_SOLLC Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2

 Score =  343 bits (879), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/290 (57%), Positives = 215/290 (74%), Gaps = 6/290 (2%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
           MST++ Q  VI CKAAVAW AG+PLV+EEV+V PPQ  E+R+K++ TSLC +D+  WE +
Sbjct: 1   MSTTVGQ--VIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAK 58

Query: 61  A---IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 117
               +FPRI GHEA+GIVESVG GVT+   G+HVL VF GECK C  CKS++SN C +L 
Sbjct: 59  GQNPVFPRILGHEAAGIVESVGEGVTDLAPGDHVLPVFTGECKDCAHCKSEESNMCSLLR 118

Query: 118 LE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC 176
           +   RGVM +D ++RFSI G P+YH+   S+FSEYTVVH GC  K++ +APL+K+C+LSC
Sbjct: 119 INTDRGVMLNDGKSRFSINGNPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178

Query: 177 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
           G+S GLGA+ NVA  +KGS+V IFGLG VGL+ A+GA+  GASRIIGVD N  + E+AK 
Sbjct: 179 GISTGLGASLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKK 238

Query: 237 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           FGVTEF+NP D ++PVQ+VI  +TDGG D S EC G    + +A +   D
Sbjct: 239 FGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHD 288

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14219|ADH1_PENAM Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1

 Score =  338 bits (866), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 162/282 (57%), Positives = 208/282 (73%), Gaps = 4/282 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPR 65
           +VI CKAAVAW AG+PL +EEVEV PPQ  E+R+K++ TSLC +D+  WE +    +FPR
Sbjct: 6   KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTSLCHTDVYFWEAKGQTPVFPR 65

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 124
           IFGHEA GI+ESVG GVT+   G+HVL VF GECK C  CKS +SN C++L +   RGVM
Sbjct: 66  IFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTVRGVM 125

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
             D ++RFSI GKP+YH+   S+FSEYTV+H GC  K++  APL+K+C+LSCG+S GLGA
Sbjct: 126 IGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGISTGLGA 185

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
           + NVA   KGSTV IFGLG VGL+ A+GA+  GASRIIGVD NP + E+AK FG TEF+N
Sbjct: 186 SINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGCTEFVN 245

Query: 245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           P D+N+PVQ+V+  +T+GG D S EC G+   +  A +   D
Sbjct: 246 PKDHNKPVQEVLADMTNGGVDRSVECTGNINAMIQAFECVHD 287

Pennisetum americanum (taxid: 4543)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1

 Score =  337 bits (864), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 160/282 (56%), Positives = 208/282 (73%), Gaps = 4/282 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPR 65
           +VI CKAAVAW AG+PL +EEVEV PPQ  E+R+K++ TSLC +D+  WE +    +FPR
Sbjct: 6   KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPR 65

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVM 124
           IFGHEA GI+ESVG GVT+   G+HVL VF GECK C  CKS +SN C++L +   RGVM
Sbjct: 66  IFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVM 125

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
            +D ++RFSI GKP+YH+   S+FSEYTV+H GC  K++  APL+K+C+LSCG S GLGA
Sbjct: 126 IADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYSTGLGA 185

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
           + NVA   KGSTV +FGLG VGL+ A+GA+  GASRIIGVD NP + E+A+ FG TEF+N
Sbjct: 186 SINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEARKFGCTEFVN 245

Query: 245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           P D+N+PVQ+V+  +T+GG D S EC G+   +  A +   D
Sbjct: 246 PKDHNKPVQEVLAEMTNGGVDRSVECTGNINAMIQAFECVHD 287

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q2R8Z5|ADH1_ORYSJ Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2

 Score =  335 bits (860), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/282 (56%), Positives = 206/282 (73%), Gaps = 4/282 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPR 65
           +VI CKAAVAW A +PLV+EEVEV PPQ  E+R+K++ TSLC +D+  WE +    +FPR
Sbjct: 6   KVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPR 65

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVM 124
           IFGHEA GIVESVG GVT+   G+HVL VF GECK C  CKS +SN C++L +   RGVM
Sbjct: 66  IFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVM 125

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
             D ++RFSI GKP+YH+   S+FSEYTV+H GC  K++  APL+K+C+LSCG+S GLGA
Sbjct: 126 IGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGA 185

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
             NVA   KGSTV IFGLG VGL+ A+GA+  GASRIIG+D N  + E+A+ FG TEF+N
Sbjct: 186 TINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVN 245

Query: 245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           P D+++PVQQV+  +T+GG D S EC G+   +  A +   D
Sbjct: 246 PKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHD 287

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
224078958	378	predicted protein [Populus trichocarpa]	0.982	0.756	0.867	1e-144
225454573	379	PREDICTED: alcohol dehydrogenase-like 6	0.979	0.751	0.828	1e-137
356531015	374	PREDICTED: alcohol dehydrogenase-like 6-	0.969	0.754	0.826	1e-137
449515985	379	PREDICTED: alcohol dehydrogenase-like 6-	0.955	0.733	0.834	1e-136
449469452	379	PREDICTED: alcohol dehydrogenase-like 6-	0.955	0.733	0.830	1e-136
359489892	383	PREDICTED: alcohol dehydrogenase-like 6	0.979	0.744	0.816	1e-135
255557120	369	Alcohol dehydrogenase, putative [Ricinus	0.982	0.775	0.829	1e-134
357498987	377	Alcohol dehydrogenase [Medicago truncatu	0.958	0.740	0.813	1e-132
18420834	381	alcohol dehydrogenase-like 6 [Arabidopsi	0.979	0.748	0.768	1e-130
297812675	382	hypothetical protein ARALYDRAFT_489336 [	0.969	0.738	0.773	1e-129

>gi|224078958|ref|XP_002305695.1| predicted protein [Populus trichocarpa] gi|222848659|gb|EEE86206.1| predicted protein [Populus trichocarpa]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/286 (86%), Positives = 268/286 (93%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
           MS+SIKQP VITCKAAVAWGAG+ LV++EVEV+PP P+EIRIKVV TSLCRSDI+A ++ 
Sbjct: 1   MSSSIKQPNVITCKAAVAWGAGEALVMQEVEVSPPHPQEIRIKVVTTSLCRSDISALDSH 60

Query: 61  AIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER 120
           AIFPRIFGHEASGIVES+G GVTEF EG+HVLTVF GECKTCRQC S KSN C+VLGLER
Sbjct: 61  AIFPRIFGHEASGIVESIGEGVTEFQEGDHVLTVFTGECKTCRQCMSGKSNMCQVLGLER 120

Query: 121 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA 180
           RGVMHSDQ TRFSI GKPVYHYCAVSSFSEYTVVH+GCAVKVSS APLEKICLLSCGL+A
Sbjct: 121 RGVMHSDQGTRFSINGKPVYHYCAVSSFSEYTVVHTGCAVKVSSAAPLEKICLLSCGLAA 180

Query: 181 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
           GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGA+ RGAS+IIGVDTNPEKC+KAK FG+T
Sbjct: 181 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGARIRGASQIIGVDTNPEKCDKAKDFGIT 240

Query: 241 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           EF+NPND NEP+QQVIKRITDGGADYSFECIGDTGMITTALQSCCD
Sbjct: 241 EFINPNDCNEPIQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454573|ref|XP_002263525.1| PREDICTED: alcohol dehydrogenase-like 6 isoform 1 [Vitis vinifera] gi|297737206|emb|CBI26407.3| unnamed protein product [Vitis vinifera]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/285 (82%), Positives = 261/285 (91%)

Query: 2   STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA 61
           S+SIK P VITC+AAV +GAG+ LV+EEVEV+PPQP EIRIKVV TSLCRSDITAW    
Sbjct: 3   SSSIKTPNVITCRAAVGYGAGEALVIEEVEVSPPQPMEIRIKVVSTSLCRSDITAWSQAP 62

Query: 62  IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 121
           IFPRIFGHEASGIVESVG GVTEF EG+HVLT+F GEC TCR C S KSN C+VLGLER+
Sbjct: 63  IFPRIFGHEASGIVESVGEGVTEFEEGDHVLTLFTGECMTCRHCTSGKSNMCQVLGLERK 122

Query: 122 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG 181
           GVMHSDQ+TRFSIKGKP+YHYCAVSSFSEYTVVHSGCA+KVSS+APL+KICLLSCG+SAG
Sbjct: 123 GVMHSDQKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCALKVSSLAPLDKICLLSCGVSAG 182

Query: 182 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
           LGAAW VA+I++GSTVVIFGLGTVGLSVAQGAK RGASRIIGVD N EK EKAKAFG+TE
Sbjct: 183 LGAAWKVANITEGSTVVIFGLGTVGLSVAQGAKQRGASRIIGVDINSEKMEKAKAFGITE 242

Query: 242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           F+NP+D NEPVQQVIK++TDGGADYSFECIGDTGM+TTALQSCCD
Sbjct: 243 FVNPHDCNEPVQQVIKQMTDGGADYSFECIGDTGMVTTALQSCCD 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531015|ref|XP_003534074.1| PREDICTED: alcohol dehydrogenase-like 6-like [Glycine max]

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/282 (82%), Positives = 258/282 (91%)

Query: 5   IKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFP 64
           +  PQVITCKAAVAW AG+ LV+EEVEV+PPQP EIRIKVV TSLCRSD++AWE+ AIFP
Sbjct: 1   MSSPQVITCKAAVAWRAGEALVMEEVEVSPPQPMEIRIKVVSTSLCRSDLSAWESHAIFP 60

Query: 65  RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 124
           RIFGHEASGIVESVG GVTEF EG+HVLTVFIGEC +CRQC S KSNTC++LGLERRG+M
Sbjct: 61  RIFGHEASGIVESVGQGVTEFKEGDHVLTVFIGECMSCRQCTSGKSNTCQILGLERRGLM 120

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
           HSDQ+TRFS+KGKPVYHYCAVSSFSEYTVVHSGCAVKVS +APLEKICLLSCG++AGLGA
Sbjct: 121 HSDQKTRFSLKGKPVYHYCAVSSFSEYTVVHSGCAVKVSPLAPLEKICLLSCGVAAGLGA 180

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
           AWNVAD+SKGSTVVIFGLGTVGLSVAQ +K RGASRIIGVD NP+KCE AKAFGVTE ++
Sbjct: 181 AWNVADVSKGSTVVIFGLGTVGLSVAQASKLRGASRIIGVDNNPQKCENAKAFGVTEVVD 240

Query: 245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           PN   EP+ QVIKRITDGGAD+SFEC+GDT  ITTALQSCCD
Sbjct: 241 PNSYKEPIAQVIKRITDGGADFSFECVGDTDTITTALQSCCD 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515985|ref|XP_004165028.1| PREDICTED: alcohol dehydrogenase-like 6-like [Cucumis sativus]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/278 (83%), Positives = 256/278 (92%)

Query: 8   PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIF 67
           P V+TCKAAVAWG GQPLV+EEVEV+PPQP EIR+KVV TSLCRSD++AWETQAIFPRIF
Sbjct: 9   PAVLTCKAAVAWGPGQPLVIEEVEVSPPQPMEIRVKVVSTSLCRSDLSAWETQAIFPRIF 68

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           GHEASG+VESVGPGVTEF+EG+HVLT+F GECKTCR C S KSN C+VLGLERRGVMHSD
Sbjct: 69  GHEASGVVESVGPGVTEFSEGDHVLTLFTGECKTCRHCTSGKSNMCQVLGLERRGVMHSD 128

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
           Q+TRFSIKGKP+YHYCAVSSFSEYTVVHSGCAVKVS   PLEKICLLSCG++AGLGAAWN
Sbjct: 129 QKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCAVKVSLAVPLEKICLLSCGVAAGLGAAWN 188

Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
           VADIS+GSTVVI+GLGTVGLSVAQGAK RGAS+IIGVD NPEK E AK FG+T F+NP +
Sbjct: 189 VADISEGSTVVIYGLGTVGLSVAQGAKVRGASQIIGVDINPEKSEIAKTFGITHFVNPKE 248

Query: 248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            +E +QQVI RITDGGADY+FECIGDTGMITTALQSCC
Sbjct: 249 CSESIQQVINRITDGGADYAFECIGDTGMITTALQSCC 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469452|ref|XP_004152434.1| PREDICTED: alcohol dehydrogenase-like 6-like [Cucumis sativus]

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/278 (83%), Positives = 256/278 (92%)

Query: 8   PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIF 67
           P V+TCKAAVAWG GQPLV+EEVEV+PPQP EIR+KVV TSLCRSD++AWETQAIFPRIF
Sbjct: 9   PAVLTCKAAVAWGPGQPLVIEEVEVSPPQPMEIRVKVVSTSLCRSDLSAWETQAIFPRIF 68

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           GHEASG+VESVGPGVTEF+EG+HVLT+F GECKTCR C S KSN C+VLGLER+GVMHSD
Sbjct: 69  GHEASGVVESVGPGVTEFSEGDHVLTLFTGECKTCRHCTSGKSNMCQVLGLERKGVMHSD 128

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
           Q+TRFSIKGKP+YHYCAVSSFSEYTVVHSGCAVKVS   PLEKICLLSCG++AGLGAAWN
Sbjct: 129 QKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCAVKVSLAVPLEKICLLSCGVAAGLGAAWN 188

Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
           VADIS+GSTVVI+GLGTVGLSVAQGAK RGAS+IIGVD NPEK E AK FG+T F+NP +
Sbjct: 189 VADISEGSTVVIYGLGTVGLSVAQGAKVRGASKIIGVDINPEKSEIAKTFGITHFVNPKE 248

Query: 248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            +E +QQVI RITDGGADY+FECIGDTGMITTALQSCC
Sbjct: 249 CSESIQQVINRITDGGADYAFECIGDTGMITTALQSCC 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489892|ref|XP_003633990.1| PREDICTED: alcohol dehydrogenase-like 6 isoform 2 [Vitis vinifera]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/289 (81%), Positives = 262/289 (90%), Gaps = 4/289 (1%)

Query: 2   STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--- 58
           S+SIK P VITC+AAV +GAG+ LV+EEVEV+PPQP EIRIKVV TSLCRSDITAW    
Sbjct: 3   SSSIKTPNVITCRAAVGYGAGEALVIEEVEVSPPQPMEIRIKVVSTSLCRSDITAWSQVN 62

Query: 59  -TQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 117
            +  IFPRIFGHEASGIVESVG GVTEF EG+HVLT+F GEC TCR C S KSN C+VLG
Sbjct: 63  SSPHIFPRIFGHEASGIVESVGEGVTEFEEGDHVLTLFTGECMTCRHCTSGKSNMCQVLG 122

Query: 118 LERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCG 177
           LER+GVMHSDQ+TRFSIKGKP+YHYCAVSSFSEYTVVHSGCA+KVSS+APL+KICLLSCG
Sbjct: 123 LERKGVMHSDQKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCALKVSSLAPLDKICLLSCG 182

Query: 178 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 237
           +SAGLGAAW VA+I++GSTVVIFGLGTVGLSVAQGAK RGASRIIGVD N EK EKAKAF
Sbjct: 183 VSAGLGAAWKVANITEGSTVVIFGLGTVGLSVAQGAKQRGASRIIGVDINSEKMEKAKAF 242

Query: 238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           G+TEF+NP+D NEPVQQVIK++TDGGADYSFECIGDTGM+TTALQSCCD
Sbjct: 243 GITEFVNPHDCNEPVQQVIKQMTDGGADYSFECIGDTGMVTTALQSCCD 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557120|ref|XP_002519592.1| Alcohol dehydrogenase, putative [Ricinus communis] gi|223541250|gb|EEF42803.1| Alcohol dehydrogenase, putative [Ricinus communis]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/287 (82%), Positives = 260/287 (90%), Gaps = 1/287 (0%)

Query: 1   MSTS-IKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET 59
           MSTS I    VITCKAAVAWG  + LV+EEVEV+PP P EIRIKVV TSLCRSDI+AWE+
Sbjct: 1   MSTSSINNNNVITCKAAVAWGPEEALVMEEVEVSPPHPYEIRIKVVSTSLCRSDISAWES 60

Query: 60  QAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE 119
           QA+FPRIFGHEASGIVESVG  VTEF EG+HVLTVF GEC+TCRQC S KSN C+VLGLE
Sbjct: 61  QALFPRIFGHEASGIVESVGEEVTEFGEGDHVLTVFTGECQTCRQCTSGKSNMCQVLGLE 120

Query: 120 RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS 179
           RRGVMHSDQ+TRFSIKGK VYHYCAVSSFSEYTVVHSGCAVKV S APLEKICLLSCG++
Sbjct: 121 RRGVMHSDQRTRFSIKGKHVYHYCAVSSFSEYTVVHSGCAVKVGSAAPLEKICLLSCGVA 180

Query: 180 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
           AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAK RGAS+IIGVDTNPEK EKAKAFG+
Sbjct: 181 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKLRGASQIIGVDTNPEKQEKAKAFGI 240

Query: 240 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           T+++NPN  NEP+QQ+IK IT+GGADYSFEC+GD+GMITTALQ CCD
Sbjct: 241 TQYINPNKCNEPIQQLIKCITNGGADYSFECVGDSGMITTALQCCCD 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498987|ref|XP_003619782.1| Alcohol dehydrogenase [Medicago truncatula] gi|355494797|gb|AES76000.1| Alcohol dehydrogenase [Medicago truncatula]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/279 (81%), Positives = 253/279 (90%)

Query: 8   PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIF 67
           PQVITCKAAVAWGAG+ LV+EEVEV+PPQP EIRIKVV TSLCRSD++AWET AIFPRIF
Sbjct: 7   PQVITCKAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWETHAIFPRIF 66

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           GHEASGIVESVG GVTEF EG+ VLTVFIGEC +C+ CKS K+N C+VLGLER+G+MHSD
Sbjct: 67  GHEASGIVESVGLGVTEFKEGDQVLTVFIGECMSCKLCKSGKTNICQVLGLERKGLMHSD 126

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
           Q+TRF++KGKPVYHYC VSSFSEYTVVHSGCAVKVS   PLEKIC+LSCG+SAGLGAAWN
Sbjct: 127 QKTRFTVKGKPVYHYCGVSSFSEYTVVHSGCAVKVSPHVPLEKICILSCGVSAGLGAAWN 186

Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
           VAD+SKGSTVVIFGLGTVGLSVAQGAK RGASRIIGVD NP+KCE AK+FG+TE ++P+ 
Sbjct: 187 VADVSKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCENAKSFGITEVVDPSL 246

Query: 248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
             EP+ QVIKRITDGGAD+ FEC GDT MITTALQSCCD
Sbjct: 247 YKEPIAQVIKRITDGGADFCFECAGDTDMITTALQSCCD 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420834|ref|NP_568453.1| alcohol dehydrogenase-like 6 [Arabidopsis thaliana] gi|158563847|sp|Q8LEB2.2|ADHL6_ARATH RecName: Full=Alcohol dehydrogenase-like 6 gi|19310538|gb|AAL85002.1| AT5g24760/T4C12_30 [Arabidopsis thaliana] gi|20334800|gb|AAM16261.1| AT5g24760/T4C12_30 [Arabidopsis thaliana] gi|332005972|gb|AED93355.1| alcohol dehydrogenase-like 6 [Arabidopsis thaliana]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/285 (76%), Positives = 256/285 (89%)

Query: 2   STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA 61
           S+S +QPQVITC AAVAW AG+PLV+EEVEV+PPQP EIRIKVVCTSLCRSD++AWE+Q+
Sbjct: 5   SSSFEQPQVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQS 64

Query: 62  IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 121
           + PRIFGHEA+GIVES+G GVTEF +G+HVL VF GEC +CR C S KSN C+VLG+ER+
Sbjct: 65  LLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERK 124

Query: 122 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG 181
           G+MHSDQ+TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  +APL KICLLSCG++AG
Sbjct: 125 GLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAG 184

Query: 182 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
           LGAAWNVAD+ KGS+VVIFGLGTVGLSVAQGAK RGA++I+GVD NP K E+AK FGVT+
Sbjct: 185 LGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTD 244

Query: 242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           F+N ND +EP+ QVIKR+T GGAD+SFEC+GDTG+ TTALQSC D
Sbjct: 245 FINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSD 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812675|ref|XP_002874221.1| hypothetical protein ARALYDRAFT_489336 [Arabidopsis lyrata subsp. lyrata] gi|297320058|gb|EFH50480.1| hypothetical protein ARALYDRAFT_489336 [Arabidopsis lyrata subsp. lyrata]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/282 (77%), Positives = 253/282 (89%)

Query: 5   IKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFP 64
            +QPQVITCKAAVAW AG+PLV+EEVEV+PPQP EIRIKVVCTSLCRSD++AWE Q++ P
Sbjct: 9   FEQPQVITCKAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWEAQSLLP 68

Query: 65  RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 124
           RIFGHEA+GIVES+G GVTEF +G+HVL VF GEC +CR C S KSN C+VLG+ER+G+M
Sbjct: 69  RIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLM 128

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
           HSDQ+TRF+IKGKPVYHYCAVSSFSEYTVVHSGCAVKV  +APL KICLLSCG++AGLGA
Sbjct: 129 HSDQKTRFTIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPVAPLHKICLLSCGVAAGLGA 188

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
           AWNVAD+ KGS+VVIFGLGTVGLSVAQGAK RGA++IIGVD NP K E+AK FGVT+F+N
Sbjct: 189 AWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQIIGVDINPAKAEQAKTFGVTDFIN 248

Query: 245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
            ND +EP+ QVIKR+T GGAD+SFEC+GDTG+ TTALQSC D
Sbjct: 249 SNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSD 290

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.979	0.748	0.680	7.5e-105
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.951	0.730	0.491	1.8e-69
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.951	0.703	0.432	4.8e-62
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.945	0.731	0.425	2.1e-61
UNIPROTKB|F1NKS5	374	ADH5 "Uncharacterized protein"	0.941	0.732	0.422	2.5e-58
UNIPROTKB|F1S0C1	374	ADH5 "Uncharacterized protein"	0.945	0.735	0.421	2.5e-58
UNIPROTKB|F1NI89	370	ADH5 "Uncharacterized protein"	0.941	0.740	0.422	3.2e-58
UNIPROTKB|F1NKS6	362	ADH5 "Uncharacterized protein"	0.941	0.756	0.422	3.2e-58
UNIPROTKB|F1PLM5	376	F1PLM5 "Uncharacterized protei	0.945	0.731	0.417	4e-58
UNIPROTKB|J9PA83	374	ADH5 "Uncharacterized protein"	0.945	0.735	0.417	4e-58

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 194/285 (68%), Positives = 227/285 (79%)

Query:     2 STSIKQPQVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQA 61
             S+S +QPQVITC AAVAW AG+                IRIKVVCTSLCRSD++AWE+Q+
Sbjct:     5 SSSFEQPQVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQS 64

Query:    62 IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 121
             + PRIFGHEA+GIVES+G GVTEF +G+HVL VF GEC +CR C S KSN C+VLG+ER+
Sbjct:    65 LLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERK 124

Query:   122 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXX 181
             G+MHSDQ+TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  +APL KI          
Sbjct:   125 GLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAG 184

Query:   182 XXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
                 WNVAD+ KGS+VVIFGLGTVGLSVAQGAK RGA++I+GVD NP K E+AK FGVT+
Sbjct:   185 LGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTD 244

Query:   242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
             F+N ND +EP+ QVIKR+T GGAD+SFEC+GDTG+ TTALQSC D
Sbjct:   245 FINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSD 289

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 139/283 (49%), Positives = 182/283 (64%)

Query:     9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQA---IFPR 65
             Q+I CKAAVAW AG+                +RIK++ TSLC +D+  WE +    +FPR
Sbjct:     6 QIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPLFPR 65

Query:    66 IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL--ERRGV 123
             IFGHEA GIVESVG GVT+   G+HVL +F GEC  CR C S++SN C++L +  ER G+
Sbjct:    66 IFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTERGGM 125

Query:   124 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXX 183
             +H D ++RFSI GKP+YH+   S+FSEYTVVHSG   K++  APL+K+            
Sbjct:   126 IH-DGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLSTGLG 184

Query:   184 XXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
                NVA   KG +V IFGLG VGL  A+GA+  GASRIIGVD N ++ ++AK FGVTE +
Sbjct:   185 ATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVTECV 244

Query:   244 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
             NP D+++P+QQVI  +TDGG D S EC G    +  A +   D
Sbjct:   245 NPKDHDKPIQQVIAEMTDGGVDRSVECTGSVQAMIQAFECVHD 287

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 126/291 (43%), Positives = 177/291 (60%)

Query:     7 QPQVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAW----ETQAI 62
             Q +VITCKAAV WG                   +R+K++ +S+C +D+  W    E +  
Sbjct:     5 QGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAERA 64

Query:    63 FPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RR 121
             FPRI GHEA GIVESVG GV +  EG++V+  F GEC  C+ CK ++SN CE   ++  +
Sbjct:    65 FPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDPMK 124

Query:   122 GVMHSDQQTRFSI---------KGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIX 172
              VM +D  TRFS          + +P+YH+   S+F+EYTV+ S C VK+   +PL+++ 
Sbjct:   125 RVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQMS 184

Query:   173 XXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 232
                          WN+A++ +G +  +FGLG+VGL+VA+GA+ARGASRIIGVD N  K E
Sbjct:   185 LLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASKFE 244

Query:   233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQS 283
             K K  GVT+F+NP D  +PV Q+I+ IT GG DYSFEC G+  ++  A  S
Sbjct:   245 KGKLMGVTDFINPKDLTKPVHQMIREITGGGVDYSFECTGNVDVLREAFLS 295

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 119/280 (42%), Positives = 176/280 (62%)

Query:     9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPR 65
             +VI CKAAVAW AG+                +R+K+  T +C +D   ++  + + +FP 
Sbjct:     6 KVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPEGLFPV 65

Query:    66 IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 124
             I GHE +G VESVG GVT+F  G+ V+ +++ +C  C+ CK+ K+N C+ + + + +G+M
Sbjct:    66 ILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGQGLM 125

Query:   125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 184
               D  +RF+ KGK ++H+   S+FSEYTVV      KV   APL+K+             
Sbjct:   126 -PDNTSRFTCKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTGYGA 184

Query:   185 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
               N A +  GST  +FGLG VGL+V  G K+ GA+RIIG+D NP+K E AK FG TEF+N
Sbjct:   185 AINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGATEFVN 244

Query:   245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
             P D+++P+Q+V+  +TDGG DYSFECIG+ G++  AL++C
Sbjct:   245 PKDHSKPIQEVLVELTDGGVDYSFECIGNVGIMRAALEAC 284

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NKS5 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 118/279 (42%), Positives = 166/279 (59%)

Query:    10 VITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPRI 66
             VI CKAAVAW AG+                +RIK+V T+LC +D   ++  + +  FP I
Sbjct:     5 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 64

Query:    67 FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
              GHE +GIVESVG GVT+   G+ V+ ++I +C  C+ CK+ K+N C+ + + + +G+M 
Sbjct:    65 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRVTQGKGLM- 123

Query:   126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
              D   RF+ KGK +YH+   S+FSEYTVV      K+   AP +K+              
Sbjct:   124 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 183

Query:   186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
              N A +  GST  +FGLG VGL+   G KA GASRIIG+D N     KAK FG  E ++P
Sbjct:   184 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTYAKAKEFGAAECISP 243

Query:   246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
              D  +P+Q+V+  +TDGG DYSFECIG+ G++  AL++C
Sbjct:   244 QDFEKPIQEVLVEMTDGGVDYSFECIGNVGVMRAALEAC 282

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA

GO:0003016 "respiratory system process" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0046294 "formaldehyde catabolic process" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IEA

GO:0051775 "response to redox state" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1S0C1 ADH5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 118/280 (42%), Positives = 171/280 (61%)

Query:     9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPR 65
             QVI CKAAVAW AG+                +RIK++ T++C +D   ++  + +  FP 
Sbjct:     4 QVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 63

Query:    66 IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 124
             I GHE +GIVESVG GVT+   G+ V+ ++I +C  C+ C + K+N C+ + + + +G+M
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 123

Query:   125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 184
               D  +RF+ KGK + HY   S+FSEYTVV      K+  +APL+K+             
Sbjct:   124 -PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGVSTGYGA 182

Query:   185 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
               N A +  GST  +FGLG VGL+V  G K  GASRIIGVD N +K  +AK FG +E +N
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGASECIN 242

Query:   245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
             P D ++P+Q+V+  +TDGG DYSFECIG+  ++  AL++C
Sbjct:   243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC 282

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0051775 "response to redox state" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IEA

GO:0046294 "formaldehyde catabolic process" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0003016 "respiratory system process" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NI89 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 118/279 (42%), Positives = 165/279 (59%)

Query:    10 VITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPRI 66
             VI CKAAVAW AG+                +RIK+V T+LC +D   ++  + +  FP I
Sbjct:     1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60

Query:    67 FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
              GHE +GIVESVG GVT+   G+ V+ ++I +C  C+ CK+ K+N C+ +   + +G+M 
Sbjct:    61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKGLM- 119

Query:   126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
              D   RF+ KGK +YH+   S+FSEYTVV      K+   AP +K+              
Sbjct:   120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179

Query:   186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
              N A +  GST  +FGLG VGL+   G KA GASRIIG+D N     KAK FG  E ++P
Sbjct:   180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTYAKAKEFGAAECISP 239

Query:   246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
              D  +P+Q+V+  +TDGG DYSFECIG+ G++  AL++C
Sbjct:   240 QDFEKPIQEVLVEMTDGGVDYSFECIGNVGVMRAALEAC 278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1NKS6 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 118/279 (42%), Positives = 165/279 (59%)

Query:    10 VITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPRI 66
             VI CKAAVAW AG+                +RIK+V T+LC +D   ++  + +  FP I
Sbjct:     1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60

Query:    67 FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
              GHE +GIVESVG GVT+   G+ V+ ++I +C  C+ CK+ K+N C+ +   + +G+M 
Sbjct:    61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKGLM- 119

Query:   126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
              D   RF+ KGK +YH+   S+FSEYTVV      K+   AP +K+              
Sbjct:   120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179

Query:   186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
              N A +  GST  +FGLG VGL+   G KA GASRIIG+D N     KAK FG  E ++P
Sbjct:   180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTYAKAKEFGAAECISP 239

Query:   246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
              D  +P+Q+V+  +TDGG DYSFECIG+ G++  AL++C
Sbjct:   240 QDFEKPIQEVLVEMTDGGVDYSFECIGNVGVMRAALEAC 278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 117/280 (41%), Positives = 170/280 (60%)

Query:     9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPR 65
             QVI CKAAVAW AG+                +RIK++ T++C +D   ++  + +  FP 
Sbjct:     6 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 65

Query:    66 IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 124
             I GHE +GIVESVG GVT+   G+ V+ ++I +C  C+ C + K+N C+ + + + +G+M
Sbjct:    66 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 125

Query:   125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 184
               D  +RF+ KGK + HY   S+FSEYTVV      K+  +APL+K+             
Sbjct:   126 -PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 184

Query:   185 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
               N A +  GST  +FGLG VGL+   G K  GASRIIGVD N +K  +AK FG +E +N
Sbjct:   185 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECIN 244

Query:   245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
             P D ++P+Q+V+  +TDGG DYSFECIG+  ++  AL++C
Sbjct:   245 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC 284

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9PA83 ADH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 117/280 (41%), Positives = 170/280 (60%)

Query:     9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPR 65
             QVI CKAAVAW AG+                +RIK++ T++C +D   ++  + +  FP 
Sbjct:     4 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 63

Query:    66 IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 124
             I GHE +GIVESVG GVT+   G+ V+ ++I +C  C+ C + K+N C+ + + + +G+M
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 123

Query:   125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 184
               D  +RF+ KGK + HY   S+FSEYTVV      K+  +APL+K+             
Sbjct:   124 -PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182

Query:   185 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
               N A +  GST  +FGLG VGL+   G K  GASRIIGVD N +K  +AK FG +E +N
Sbjct:   183 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECIN 242

Query:   245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
             P D ++P+Q+V+  +TDGG DYSFECIG+  ++  AL++C
Sbjct:   243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC 282

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LEB2	ADHL6_ARATH	1, ., 1, ., 1, ., 1	0.7684	0.9793	0.7480	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963
4th Layer	1.1.1.1	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IV.2461.1	alcohol dehydrogenase (EC-1.1.1.1) (377 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XI.3391.1	pyruvate decarboxylase (EC-4.1.1.1) (574 aa)						•			0.899
	gw1.V.2645.1	hypothetical protein (479 aa)						•			0.899
	gw1.III.2325.1	SubName- Full=Putative uncharacterized protein; (514 aa)						•			0.899
	gw1.4555.2.1	annotation not avaliable (88 aa)						•			0.899
	gw1.134.62.1	hypothetical protein (453 aa)						•			0.899
	grail3.0005008802	aldehyde dehydrogenase (NAD+) (EC-1.2.1.3) (543 aa)						•			0.899
	fgenesh4_pg.C_LG_II000742	hypothetical protein (480 aa)						•			0.899
	eugene3.01840014	pyruvate decarboxylase (549 aa)						•			0.899
	eugene3.00060891	pyruvate decarboxylase (EC-4.1.1.1) (606 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_XVI0442	pyruvate decarboxylase (EC-4.1.1.1) (606 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	0.0
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-173
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-136
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-133
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-129
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-117
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-107
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-103
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-102
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	5e-95
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-73
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	2e-66
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	3e-66
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	8e-56
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	1e-48
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	9e-47
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	5e-46
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	4e-45
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	3e-44
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	9e-44
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	6e-43
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	1e-42
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	3e-39
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	9e-39
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	3e-38
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	3e-38
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	6e-38
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	3e-37
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	1e-36
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	1e-35
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	2e-33
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	7e-32
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	9e-32
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	1e-31
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	8e-30
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	5e-29
cd05281	341	cd05281, TDH, Threonine dehydrogenase	5e-28
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	3e-27
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	6e-27
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-26
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	3e-26
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	4e-26
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	5e-26
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	6e-26
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	4e-25
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	4e-25
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	1e-24
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-24
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	3e-24
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	9e-24
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	3e-22
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	5e-22
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	1e-21
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	1e-20
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	2e-20
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-20
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	2e-19
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	5e-19
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	9e-19
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-18
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	1e-18
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	3e-18
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	3e-18
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	6e-18
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	3e-17
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	4e-17
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	1e-16
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	3e-16
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	3e-15
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	4e-15
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-14
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-14
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	5e-13
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	8e-13
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	9e-13
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	4e-12
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	7e-12
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	1e-11
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	4e-11
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	2e-10
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	3e-10
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	4e-10
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	5e-10
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	2e-09
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	3e-09
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	9e-09
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	8e-08
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	1e-07
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	4e-07
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	5e-07
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	1e-06
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	1e-06
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	1e-06
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-06
PRK14806	735	PRK14806, PRK14806, bifunctional cyclohexadienyl d	3e-06
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	4e-06
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	8e-06
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	2e-05
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-05
COG1748	389	COG1748, LYS9, Saccharopine dehydrogenase and rela	3e-05
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	4e-05
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	4e-05
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	5e-05
pfam02254	116	pfam02254, TrkA_N, TrkA-N domain	5e-05
COG0287	279	COG0287, TyrA, Prephenate dehydrogenase [Amino aci	3e-04
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-04
PRK01390	460	PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-04
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	4e-04
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	0.001
smart00829	287	smart00829, PKS_ER, Enoylreductase	0.001
COG0569	225	COG0569, TrkA, K+ transport systems, NAD-binding c	0.002
PRK06545	359	PRK06545, PRK06545, prephenate dehydrogenase; Vali	0.002
PRK08507	275	PRK08507, PRK08507, prephenate dehydrogenase; Vali	0.002
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	0.003
cd01075	200	cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d	0.003
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	0.003
TIGR03026	409	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog	0.004

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  555 bits (1431), Expect = 0.0
 Identities = 232/286 (81%), Positives = 261/286 (91%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
            S+SI QP VITC+AAVAWGAG+ LV+EEVEV+PPQP EIRIKVV TSLCRSD++AWE+Q
Sbjct: 1   SSSSISQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ 60

Query: 61  AIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER 120
           A+FPRIFGHEASGIVES+G GVTEF +G+HVLTVF GEC +CR C S KSN C+VLGLER
Sbjct: 61  ALFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLER 120

Query: 121 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA 180
           +GVMHSDQ+TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  +APL KICLLSCG++A
Sbjct: 121 KGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAA 180

Query: 181 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
           GLGAAWNVAD+SKGS+VVIFGLGTVGLSVAQGAK RGAS+IIGVD NPEK EKAK FGVT
Sbjct: 181 GLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT 240

Query: 241 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           +F+NPND +EP+QQVIKR+T GGADYSFEC+GDTG+ TTALQSC D
Sbjct: 241 DFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSD 286

Length = 378

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  484 bits (1247), Expect = e-173
 Identities = 176/280 (62%), Positives = 217/280 (77%), Gaps = 4/280 (1%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---TQAIFPRIF 67
           ITCKAAVAW AG+PLV+EEVEV PPQ  E+RIK++ TSLC +D+  WE      +FPRI 
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHS 126
           GHEA+GIVESVG GVT+   G+HVL VF GECK CR CKS+KSN C++L +   RGVM +
Sbjct: 61  GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
           D ++RFSI GKP+YH+   S+FSEYTVVH GC  K++  APL+K+CLLSCG+S GLGAAW
Sbjct: 121 DGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAW 180

Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
           NVA + KGSTV IFGLG VGL+VA+GA+ RGASRIIGVD NP K E+AK FGVTEF+NP 
Sbjct: 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK 240

Query: 247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           D+++PVQ+VI  +T GG DYSFEC G+   + +A +   D
Sbjct: 241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHD 280

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  388 bits (998), Expect = e-136
 Identities = 147/276 (53%), Positives = 189/276 (68%), Gaps = 3/276 (1%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--TQAIFPRIFG 68
           I CKAAVAW AG+PLV+EE+EV PP+  E+RIK++ TS+C +DI A E     +FP I G
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKATLFPVILG 60

Query: 69  HEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 128
           HE +GIVESVG GVT    G+ V+ +FIG+C  C  C+S K+N C+       G+M  D 
Sbjct: 61  HEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLM-PDG 119

Query: 129 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 188
            +RF+ KGK +YH+   S+FS+YTVV      K+   APLE +CLL CG S G GAAWN 
Sbjct: 120 TSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNT 179

Query: 189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 248
           A +  GSTV +FGLG VGLS   GAK  GASRIIGVD N +K EKAK FG T+F+NP D+
Sbjct: 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDS 239

Query: 249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           ++PV +VI+ +T GG DYSFEC G+  ++  AL+S 
Sbjct: 240 DKPVSEVIREMTGGGVDYSFECTGNADLMNEALEST 275

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  382 bits (984), Expect = e-133
 Identities = 159/287 (55%), Positives = 213/287 (74%), Gaps = 7/287 (2%)

Query: 7   QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW----ETQAI 62
           Q +VITCKAAVAWG G+PLV+EE+ V+PPQ  E+RIK++ TS+C +D++AW    E Q  
Sbjct: 5   QGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRA 64

Query: 63  FPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-R 121
           +PRI GHEA+GIVESVG GV +   G+HV+ +F GEC  CR CK DK+N CE   ++  +
Sbjct: 65  YPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFK 124

Query: 122 GVMHSDQQTRFSIK--GKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS 179
            VM +D +TRFS K  G+P+YH+   S+F+EYTV+ S C VK+   APL+K+ LLSCG+S
Sbjct: 125 SVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVS 184

Query: 180 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
            G+GAAWN A++  GS+V IFGLG VGL+VA+GA+ARGAS+IIGVD NPEK EK K  G+
Sbjct: 185 TGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244

Query: 240 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           T+F+NP D+++PV + I+ +T GG DYSFEC G+  ++  A  S  D
Sbjct: 245 TDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHD 291

Length = 381

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  371 bits (955), Expect = e-129
 Identities = 145/278 (52%), Positives = 197/278 (70%), Gaps = 5/278 (1%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW---ETQAIFPRIF 67
           ITCKAAVAW AG+PL +EEVEV PP+  E+RIK++ T +C +D       + + +FP I 
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTC-EVLGLERRGVMHS 126
           GHE +GIVESVG GVT    G+HV+ ++  EC  C+ CKS K+N C ++   + +G+M  
Sbjct: 61  GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-P 119

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
           D  +RFS KGKP+YH+   S+FSEYTVV      K++  APL+K+CLL CG++ G GA  
Sbjct: 120 DGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVL 179

Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
           N A +  GSTV +FGLG VGL+V QGAKA GASRIIG+D NP+K E AK FG T+ +NP 
Sbjct: 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPK 239

Query: 247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           D+++P+QQV+  +TDGG DY+FECIG+  ++  AL++C
Sbjct: 240 DHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEAC 277

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  340 bits (875), Expect = e-117
 Identities = 138/279 (49%), Positives = 180/279 (64%), Gaps = 4/279 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--AIFPRI 66
           +VI CKAAV W   +P  +EE+EV PP+  E+RIK+V T +CRSD      +    FP I
Sbjct: 4   KVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVTPFPVI 63

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL-ERRGVMH 125
            GHEA+GIVESVG GVT    G+ V+ +F+ +C  CR C + +SN C    L + +G+M 
Sbjct: 64  LGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM- 122

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
            D  +RF+ KGKP++H+   S+FSEYTVV      K+ + APLEK+CL+ CG S G GAA
Sbjct: 123 QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAA 182

Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            N A ++ GST  +FGLG VGLS   G KA GASRII VD N +K  KAK  G TE +NP
Sbjct: 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINP 242

Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D  +P+Q+V+  +TDGG D+SFE IG    +  AL SC
Sbjct: 243 QDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASC 281

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  315 bits (810), Expect = e-107
 Identities = 131/278 (47%), Positives = 176/278 (63%), Gaps = 7/278 (2%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI---FPRIF 67
           +  +AAVA  AG+PL +EEV+++PP+  E+ +++  T +C +D            FP + 
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLS-GDDPEGFPAVL 59

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG-LERRGVMHS 126
           GHE +GIVE+VG GVT    G+HV+ +F  EC  C+ C S K N CE +   + +G M  
Sbjct: 60  GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-P 118

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
           D  TR S  G PVYHY   S+F+EYTVVH    VK+   APLEK CLL CG++ G+GA  
Sbjct: 119 DGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178

Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
           N A +  G TV +FGLG VGL+  QGAKA GA RII VD NPEK E AK FG T F+NP 
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK 238

Query: 247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           +  + V + I  +TDGGADY+FEC+G+  ++  AL++ 
Sbjct: 239 E-VDDVVEAIVELTDGGADYAFECVGNVEVMRQALEAT 275

Length = 366

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  306 bits (786), Expect = e-103
 Identities = 134/275 (48%), Positives = 178/275 (64%), Gaps = 4/275 (1%)

Query: 13  CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--AIFPRIFGHE 70
           CKAAV W  G+PL +EE+EV PP+  E+RIKVV T +C +D+   + +     P I GHE
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPTPLPVILGHE 60

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVL-GLERRGVMHSDQQ 129
            +GIVES+GPGVT    G+ V+ +F  +C  C+QC + + N C    G   RG+M SD  
Sbjct: 61  GAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGT 119

Query: 130 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 189
           +RF+ KGKP++H+   S+F+EYTVV      K+   APLEK+CL+ CG S G GAA N A
Sbjct: 120 SRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTA 179

Query: 190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 249
            ++ GST  +FGLG VGLSV  G KA GASRII VD N +K EKAK  G TE +NP D +
Sbjct: 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQD 239

Query: 250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           +P+ +V+  +TDGG DY+FE IG    +  AL + 
Sbjct: 240 KPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDAT 274

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  302 bits (775), Expect = e-102
 Identities = 134/275 (48%), Positives = 186/275 (67%), Gaps = 5/275 (1%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD---ITAWETQAIFPRIFGHE 70
           +AAVAW AGQPL +EEV+V  PQ  E+ +++V T +C +D   ++  + + +FP I GHE
Sbjct: 3   RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE-VLGLERRGVMHSDQQ 129
            +GIVE+VG GVT    G+HV+ ++  EC  C+ C S K+N C  V   + +G+M  D  
Sbjct: 63  GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGT 121

Query: 130 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 189
           +RFS  G+P+YHY   S+FSEYTVV      K++  APLE++CLL CG++ G+GA  N A
Sbjct: 122 SRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181

Query: 190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 249
            + +G TV +FGLG +GLSV QGA+   ASRII +D NP K E AK  G T+ +NPND +
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYD 241

Query: 250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           +P+Q+VI  ITDGG DYSFECIG+  ++  AL+ C
Sbjct: 242 KPIQEVIVEITDGGVDYSFECIGNVNVMRAALECC 276

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  284 bits (729), Expect = 5e-95
 Identities = 114/272 (41%), Positives = 158/272 (58%), Gaps = 6/272 (2%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--TQAIFPRIFGHEA 71
           +AAV    G+PL +EEVE++ P P E+ +++    LC SD+        A  P + GHE 
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAPLPAVLGHEG 61

Query: 72  SGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTR 131
           +G+VE VGPGVT    G+HV+  +I  C TCR C   + N C+ LG    G    D   R
Sbjct: 62  AGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCD-LGAGILGGQLPDGTRR 120

Query: 132 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADI 191
           F+  G+PV   C + +F+EYTVV     VK+    PL++  LL CG++ G+GA  N A +
Sbjct: 121 FTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARV 180

Query: 192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 251
             G TV + G G VGL+  QGA+  GASRII VD  PEK E A+ FG T  +N ++ ++ 
Sbjct: 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE-DDA 239

Query: 252 VQQVIKRITDG-GADYSFECIGDTGMITTALQ 282
           V+ V + +TDG GADY+FE +G    I  AL 
Sbjct: 240 VEAV-RDLTDGRGADYAFEAVGRAATIRQALA 270

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  229 bits (586), Expect = 2e-73
 Identities = 97/278 (34%), Positives = 140/278 (50%), Gaps = 9/278 (3%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI---FPRIF 67
           +   AAV    G P V+E+VE++ P+P+E+ +++V T +C +D+       +    P + 
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVV-RDGGLPTPLPAVL 59

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           GHE +G+VE+VG  VT    G+HV+  F   C  C  C S     CE            D
Sbjct: 60  GHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPD 118

Query: 128 QQTRFSI-KGKPVY-HYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
             T  S+  G PV+ H+   SSF+ Y VVH    VKV    PLE +  L CG+  G GA 
Sbjct: 119 GSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAV 178

Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            NV     GS++ +FG G VGL+    AK  G + II VD    + E AK  G T  +NP
Sbjct: 179 LNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINP 238

Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQS 283
            + +  +   I+ IT GG DY+ +  G   +I  A+ +
Sbjct: 239 KEED--LVAAIREITGGGVDYALDTTGVPAVIEQAVDA 274

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  211 bits (539), Expect = 2e-66
 Identities = 105/256 (41%), Positives = 145/256 (56%), Gaps = 7/256 (2%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD---ITAWETQAIFPRIFGHE 70
           KAAV WG GQP  VEE+E++ P+  E+ +K+V + LC SD   +T       +P + GHE
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHE 62

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
            +G+V  VGPGVT    G+HV+  FI  C  CR C +   N C++      G   SD   
Sbjct: 63  GAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGTY 122

Query: 131 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD 190
           RF   G+ V   C + +FSEYTVV     VK+    PL+K CL+ CG+  G G+A N+AD
Sbjct: 123 RFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIAD 182

Query: 191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 250
           +  G TVV+ G+G VG++  QGA   GA ++I VD    K E+A  FG T         E
Sbjct: 183 VRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAF--ASMEE 240

Query: 251 PVQQVIKRITDG-GAD 265
            V Q+++ +T+G GAD
Sbjct: 241 AV-QLVRELTNGQGAD 255

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  211 bits (538), Expect = 3e-66
 Identities = 102/271 (37%), Positives = 145/271 (53%), Gaps = 6/271 (2%)

Query: 15  AAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI--FPRIFGHEAS 72
           A   +   +PLV+EEVE++PP P E+ +K+    LC SD++          P   GHEA+
Sbjct: 11  APTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPLPMALGHEAA 70

Query: 73  GIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTR 131
           G+V  VG GVT+   G+HV+ VF+  C  CR C   +   CE        G + S  + R
Sbjct: 71  GVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGR-R 129

Query: 132 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADI 191
             ++G  + H+  VS+F+EY VV     VK+    PLE   L  C +  G+GA  N A +
Sbjct: 130 LRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGV 189

Query: 192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 251
             G +V + GLG VGLS   GA A GAS+++ VD N +K   A+  G T  +N  D N  
Sbjct: 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPN-A 248

Query: 252 VQQVIKRITDGGADYSFECIGDTGMITTALQ 282
           V+QV + +T GG DY+FE  G    + TA +
Sbjct: 249 VEQV-RELTGGGVDYAFEMAGSVPALETAYE 278

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  184 bits (468), Expect = 8e-56
 Identities = 99/278 (35%), Positives = 127/278 (45%), Gaps = 11/278 (3%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPR--IFGHEA 71
           KAAV  G   PL +EE+ V  P+  EI I+V    +C SD+   + +  FP   + GHE 
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPFPPPFVLGHEI 61

Query: 72  SGIVESVGPGVT---EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR-GVMHSD 127
           SG V  VGP V      + G+ V+  FI  C  CR C   K N CE      R      D
Sbjct: 62  SGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYD 121

Query: 128 QQTR-FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
             TR F + G PVY Y ++   +EY VV +     +       +  +L C      GA  
Sbjct: 122 GTTRLFRLDGGPVYMY-SMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALK 180

Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
           + AD+  G TV + G+G VG S  Q AKA GAS II VD   EK  KAK  G T  +N  
Sbjct: 181 HAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAA 240

Query: 247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQS 283
             +      I+ IT G G D   E +G       AL  
Sbjct: 241 KEDAVAA--IREITGGRGVDVVVEALGKPETFKLALDV 276

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  162 bits (411), Expect = 1e-48
 Identities = 71/250 (28%), Positives = 105/250 (42%), Gaps = 32/250 (12%)

Query: 39  EIRIKVVCTSLCRSDITAWE----TQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTV 94
           E+ ++V    LC +D+             P I GHE +G+V  VGPGVT    G+ V+ +
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 95  FIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 154
               C TC  C+        +LG    G                         F+EY VV
Sbjct: 61  PNLGCGTCELCRELCPG-GGILGEGLDG------------------------GFAEYVVV 95

Query: 155 HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAK 214
            +   V +     LE+  LL   L+    A      +  G TV++ G G VGL  AQ AK
Sbjct: 96  PADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAK 155

Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 274
           A GA R+I  D + EK E AK  G    ++  +  E +++ ++    GGAD   + +G  
Sbjct: 156 AAGA-RVIVTDRSDEKLELAKELGADHVIDYKE--EDLEEELRLTGGGGADVVIDAVGGP 212

Query: 275 GMITTALQSC 284
             +  AL+  
Sbjct: 213 ETLAQALRLL 222

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  159 bits (405), Expect = 9e-47
 Identities = 78/276 (28%), Positives = 113/276 (40%), Gaps = 23/276 (8%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIF----PRIFGH 69
           KAAV +  G  + +EE     P P ++ I+V  T +C SD+  +     F      I GH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 70  EASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 129
           E  G V  VG  V  F  G+ V+      C  CR C++ + N CE  G            
Sbjct: 62  EFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPG------------ 108

Query: 130 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 189
                 G           F+EY  V +   +        E+   L+  L+         A
Sbjct: 109 ----FYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERA 164

Query: 190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 249
            +  G TVV+ G G +GL     AK  GAS +I VD +PE+ E AK  G  + +  N + 
Sbjct: 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV-NPSE 223

Query: 250 EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSC 284
           +     I  +T G GAD   E +G    +  AL++ 
Sbjct: 224 DDAGAEILELTGGRGADVVIEAVGSPPALDQALEAL 259

Length = 350

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  158 bits (400), Expect = 5e-46
 Identities = 88/265 (33%), Positives = 134/265 (50%), Gaps = 15/265 (5%)

Query: 12  TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI---FPRIFG 68
           T +  +A   G P+ +E + V  P P E+ + +    +C +D+  +    I   FP + G
Sbjct: 1   TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLH-YREGGINDEFPFLLG 59

Query: 69  HEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 128
           HEA+G+VE+VG GVT+   G++V+  +   C  CR CK  +   C           H+  
Sbjct: 60  HEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYC--------FDTHNAT 111

Query: 129 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 188
           Q      G  +     + +F+E T+VH+G   KV   A      LL CG+ AGLGAA N 
Sbjct: 112 QKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNT 171

Query: 189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 248
             + +G +V + G G VG +   GA   GAS+II VD +  K E A+ FG T  +N +  
Sbjct: 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG- 230

Query: 249 NEPVQQVIKRITDG-GADYSFECIG 272
            +PV+  I+ +T G GAD   + +G
Sbjct: 231 TDPVEA-IRALTGGFGADVVIDAVG 254

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  155 bits (394), Expect = 4e-45
 Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 28/264 (10%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW---ETQAIFPRIFGHE 70
           +AAV    G+PL + EV    P P+ + ++V    +CRSD   W   +     P + GHE
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
            +G+V  VG  V+ +  G+ V   F+  C TC  C++  SN CE              Q 
Sbjct: 62  FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQ-----------VQP 110

Query: 131 RFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 188
            F+  G          SF+EY  V       V++           L C  +    A  + 
Sbjct: 111 GFTHPG----------SFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQ 160

Query: 189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 248
           A +  G  V + G G VGLS    A A GA R+I VD + +K E A+  G    +N ++ 
Sbjct: 161 ARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE- 218

Query: 249 NEPVQQVIKRITDGGADYSFECIG 272
            E V   ++ +T GGA  S + +G
Sbjct: 219 VEDVAAAVRDLTGGGAHVSVDALG 242

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  153 bits (388), Expect = 3e-44
 Identities = 85/287 (29%), Positives = 121/287 (42%), Gaps = 40/287 (13%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--------------T 59
           KAA   G    + VEEV   P +P E++IKV    +C SD+  +               T
Sbjct: 2   KAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLT 60

Query: 60  QAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE 119
               P   GHE SG+V  VG GVT F  G+ V+     +C TC  CK    N C+ LG  
Sbjct: 61  GETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFI 120

Query: 120 RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS 179
             G+                        F+EY VV +    K+    PLE    L   L+
Sbjct: 121 --GLGGGG------------------GGFAEYVVVPAYHVHKLPDNVPLE-EAALVEPLA 159

Query: 180 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
               A    +    G T ++ G G +GL      KA GAS+II  + +  + E A+  G 
Sbjct: 160 VAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA 218

Query: 240 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCC 285
           T  L+P +    V   ++++T G G D SF+C G    + TA+ +  
Sbjct: 219 TIVLDPTE--VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALR 263

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  151 bits (384), Expect = 9e-44
 Identities = 82/278 (29%), Positives = 119/278 (42%), Gaps = 38/278 (13%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW--ETQAIFPRIFGHEA 71
           KA V  G G  L  E++    P P E+ +KV    +C SDI  +        P + GHE 
Sbjct: 2   KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYHPPLVLGHEF 60

Query: 72  SGIVESVGPGVTEFNEGEHVLTVF-IGECKTCRQCKSDKSNTCE---VLGLERRGVMHSD 127
           SG VE VG GV +   G+ V  V  +  C  C  CK  + + C     +G  R G     
Sbjct: 61  SGTVEEVGSGVDDLAVGDRV-AVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDG----- 114

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
                              +F+EY  V +   +K+      E+  ++    +  L A   
Sbjct: 115 -------------------AFAEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVALHAVRL 154

Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
            A I+ G TVV+ G GT+GL   Q  K  GA R+I VD + EK   A+  G  + +NP +
Sbjct: 155 -AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE 213

Query: 248 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSC 284
            +    + ++ +T+G GAD   E  G    I  AL   
Sbjct: 214 EDV---EKVRELTEGRGADLVIEAAGSPATIEQALALA 248

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  149 bits (379), Expect = 6e-43
 Identities = 78/270 (28%), Positives = 110/270 (40%), Gaps = 39/270 (14%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---TQAIFPRIF 67
           +T KAAV    GQPL +EEV V  P P E+ IKV    +C +D+   +        P I 
Sbjct: 2   MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIP 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTV-FIGECKTCRQCKSDKSNTCE---VLGLERRGV 123
           GHE  G V  VG GVT    G+ V     +  C  C  C+S   N C    + G    G 
Sbjct: 62  GHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDG- 120

Query: 124 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 183
                                   ++EY VV +   VK+     L +   L C       
Sbjct: 121 -----------------------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR 157

Query: 184 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
           A    A++  G  V + G G +G    Q AKA GA  +I +  + EK E AK  G    +
Sbjct: 158 AL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVI 215

Query: 244 NPNDNNEPVQQVIKRITDGGADYSFECIGD 273
           N +D ++ ++ V +      AD   + +G 
Sbjct: 216 NSSD-SDALEAVKEI-----ADAIIDTVGP 239

Length = 339

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  149 bits (378), Expect = 1e-42
 Identities = 80/282 (28%), Positives = 114/282 (40%), Gaps = 43/282 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI---FPRIFGHE 70
           KAAV  G    + +EEV V  P P E+ +KV    +C +D+            PRI GHE
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
            +G +  VG GVT F  G+ V       C  C  C     N C                 
Sbjct: 61  IAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPN--------------- 105

Query: 131 RFSIKGKPVYHY-CAVSSFSEYTVVHS-----GCAVKVSSIAPLEKICL---LSCGLSAG 181
            +   G     Y      F+EY  V +     G  +K+      E+  L   L+C +   
Sbjct: 106 -YKKFG---NLYDGG---FAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI--- 155

Query: 182 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
              A   A I  G TV++ G G +GL  A  AKA GA ++I  D N  + E AK  G   
Sbjct: 156 --NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADY 213

Query: 242 FLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQ 282
            ++  + +  + + ++ +TDG GAD      G       AL+
Sbjct: 214 TIDAAEED--LVEKVRELTDGRGADVVIVATGSPEAQAQALE 253

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  139 bits (353), Expect = 3e-39
 Identities = 80/260 (30%), Positives = 118/260 (45%), Gaps = 39/260 (15%)

Query: 22  GQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWE-TQAIF--PRIFGHEASGIVE 76
            +P  +E V++  P P   E+ ++V    +C SD+  +         PRI GHE SG V 
Sbjct: 7   EKPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVV 66

Query: 77  SVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSDQQTRFS 133
            VG GV     G+ V+      C  C  C+  + N CE   VLG+ R G           
Sbjct: 67  EVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGF--------- 117

Query: 134 IKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISK 193
                          +EY VV +   +    +  L++  L+   L+ G  A    A ++ 
Sbjct: 118 ---------------AEYIVVPADALLVPEGL-SLDQAALVEP-LAIGAHAVRR-AGVTA 159

Query: 194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ 253
           G TV++ G G +GL V Q AKARGA R+I VD + E+ E A+  G  + +N  D  E V 
Sbjct: 160 GDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD--EDVA 216

Query: 254 QVIKRITDG-GADYSFECIG 272
             ++ +TDG GAD   +  G
Sbjct: 217 ARLRELTDGEGADVVIDATG 236

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  138 bits (351), Expect = 9e-39
 Identities = 83/279 (29%), Positives = 125/279 (44%), Gaps = 33/279 (11%)

Query: 15  AAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI--F----PRIFG 68
           AAV  G G  L +EE  +  P P E+ ++V    +C SD+  ++   I  F    P + G
Sbjct: 1   AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLG 59

Query: 69  HEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           HE++G V +VG GVT    G+ V +   +  C+TC  CKS + N C              
Sbjct: 60  HESAGTVVAVGSGVTHLKVGDRVAIEPGVP-CRTCEFCKSGRYNLCP------------- 105

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
              RF+    P            Y    +    K+     LE+  L+   LS G+ A   
Sbjct: 106 -DMRFA--ATPPVDGT----LCRYVNHPADFCHKLPDNVSLEEGALVE-PLSVGVHAC-R 156

Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP-- 245
            A +  G TV++FG G +GL  A  AKA GA++++  D +P + E AK  G T  +N   
Sbjct: 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT 216

Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D  E  +++ + +   G D   EC G    I TA+ + 
Sbjct: 217 EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYAT 255

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  137 bits (348), Expect = 3e-38
 Identities = 77/273 (28%), Positives = 118/273 (43%), Gaps = 28/273 (10%)

Query: 13  CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---TQAIFPRIFGH 69
            +AAV  G G+PL + EV +   +P  + ++V    +C SD+        +   P I GH
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60

Query: 70  EASGIVESVGPGVTEFNEGEH-------VLTVFIGECKTCRQCKSDKSNTCEVLGLERRG 122
           E  G V ++G GVT    GE          +V    C  C +C       CE     R+ 
Sbjct: 61  EGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCE----NRKK 115

Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA-VKVSSIAPLEKICLLSCGLSAG 181
             H        + G           ++E+  +  G A V+V    P E     +C L+  
Sbjct: 116 YGHEASCDDPHLSG----------GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATV 165

Query: 182 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
           L A      +  G TVV+ G G +GL     AK  GA R+I +D +PE+ E A+ FG   
Sbjct: 166 LAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADA 225

Query: 242 FLNPNDNNEP-VQQVIKRITDG-GADYSFECIG 272
            ++ ++  +P  + +++ IT G GAD   E  G
Sbjct: 226 TIDIDELPDPQRRAIVRDITGGRGADVVIEASG 258

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  137 bits (346), Expect = 3e-38
 Identities = 83/268 (30%), Positives = 114/268 (42%), Gaps = 43/268 (16%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPR-----IFG 68
           KAA+     +PL +EEV    P P E+ IKV    +C  D+  W  +  FPR     I G
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFW--KGFFPRGKYPLILG 59

Query: 69  HEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMH 125
           HE  G VE VG GV  F  G+ V+  +   C  C  C S + N C      G E  G   
Sbjct: 60  HEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDG--- 116

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
                                 F+EY  V     VK+      E   L +C +   + A 
Sbjct: 117 ---------------------GFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL 155

Query: 186 WNVADISKGSTVVI-FGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
              A + KG TV++    G VG+   Q AKA GA R+I V  +PEK +  K  G    ++
Sbjct: 156 -KRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVID 213

Query: 245 PNDNNEPVQQVIKRITDGGADYSFECIG 272
            +  +E V+++      GGAD   E +G
Sbjct: 214 GSKFSEDVKKL------GGADVVIELVG 235

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  136 bits (344), Expect = 6e-38
 Identities = 86/265 (32%), Positives = 120/265 (45%), Gaps = 37/265 (13%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI--FPRIFGHEA 71
           KA V  G G+ L VEEV V  P P+E+ IKV    +C +D+  +E +     P + GHE 
Sbjct: 2   KALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAAPPLVPGHEF 60

Query: 72  SGIVESVGPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
           +G+V +VG  VT F  G+ V  V     C  C  C+  + N CE L     GV  +    
Sbjct: 61  AGVVVAVGSKVTGFKVGDRV-AVDPNIYCGECFYCRRGRPNLCENLTA--VGVTRN---- 113

Query: 131 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSAGLGAAWN 187
                G           F+EY VV +    K+      E+  L   LSC +        +
Sbjct: 114 ----GG-----------FAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVH-----GLD 153

Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
           +  I  G +V++FG G +GL +AQ  K  GASR+   + N EK E AK  G TE ++P+ 
Sbjct: 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR 213

Query: 248 NNEPVQQVIKRITDGGADYSFECIG 272
            +   Q   K     G D   E  G
Sbjct: 214 EDPEAQ---KEDNPYGFDVVIEATG 235

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  134 bits (340), Expect = 3e-37
 Identities = 85/282 (30%), Positives = 116/282 (41%), Gaps = 35/282 (12%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQ-PEEIRIKVVCTSLCRSDITAWE---TQAIFPRIFGH 69
           KA V  G G+ + +EEV     Q P +  ++V  TS+C SD+  +      A    I GH
Sbjct: 2   KALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGH 60

Query: 70  EASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 129
           E  G V  VG  V     G+ V    I  C  CR C+      CE               
Sbjct: 61  EFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGW--------- 111

Query: 130 TRFSIKGKPVYHYCAVS-SFSEYTVVH--SGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
                          +    +EY  V        K+    P E   +LS  L  G   A 
Sbjct: 112 ----------KLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAE 161

Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
             A I  GSTV + G G VGL    GA+  GA+RII VD+NPE+ + AK  G T+ +NP 
Sbjct: 162 L-AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPK 220

Query: 247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDV 287
            N + V+Q+++ +T G G D   E +G         +    V
Sbjct: 221 -NGDIVEQILE-LTGGRGVDCVIEAVG----FEETFEQAVKV 256

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  132 bits (335), Expect = 1e-36
 Identities = 78/274 (28%), Positives = 118/274 (43%), Gaps = 28/274 (10%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPR----IFGH 69
           + AV  G    + + E  V  P P E+ ++V  + LC SD+  +      P     I GH
Sbjct: 2   RGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGH 60

Query: 70  EASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 129
           E +G+V +VGPGVT F  G+ V+      C  CR C+      C                
Sbjct: 61  EPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCT--------------- 105

Query: 130 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 189
                  +  Y +      +EY +V     + +          LL CG+      A    
Sbjct: 106 -----SKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA-YHALRRV 159

Query: 190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 249
            +S   TV++ G G VGL     A+A GA  +IGVD +PE+ E AKA G    +N   ++
Sbjct: 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDD 219

Query: 250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQS 283
             VQ++ +  +  GAD + EC G+T     AL++
Sbjct: 220 --VQEIRELTSGAGADVAIECSGNTAARRLALEA 251

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  130 bits (330), Expect = 1e-35
 Identities = 81/280 (28%), Positives = 114/280 (40%), Gaps = 40/280 (14%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TAWETQAIFPR---IFGH 69
           KA    G G+     E  +    P +  ++    + C SD+ T W   A   R   I GH
Sbjct: 2   KAFAMLGIGKV-GWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWG-GAPGERHGMILGH 59

Query: 70  EASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV-MHSDQ 128
           EA G+VE VG  V +F  G+ V+   I         +              RG    S  
Sbjct: 60  EAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQ--------------RGYPSQSGG 105

Query: 129 QT---RFS-IKGKPVYHYCAVSSFSEYTVVHSGCA--VKVSSIAPLEKICLLSCGLSAGL 182
                +FS  K            F+EY  V+   A    +      E+  +L   +S G 
Sbjct: 106 MLGGWKFSNFKD---------GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGF 156

Query: 183 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 242
             A   A+I  G TV +FG+G VGL    GA+ RGA RII V + P + E AK +G T+ 
Sbjct: 157 HGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDI 215

Query: 243 LNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTAL 281
           ++   N + V+Q I ++T G G D      G       AL
Sbjct: 216 VDYK-NGDVVEQ-ILKLTGGKGVDAVIIAGGGQDTFEQAL 253

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  124 bits (313), Expect = 2e-33
 Identities = 78/278 (28%), Positives = 122/278 (43%), Gaps = 34/278 (12%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIF 67
           KAA  +  G+PL +E+V V  P P ++ ++V    +C SD+   +           P   
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           GHE +G VE VG GV    EG+ V+      C TCR C+  + N CE       G     
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCE--NARFPG----- 114

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC-GLSAGLGAAW 186
                   G           F+EY +V S   VK+       +   L+  GL+A      
Sbjct: 115 ----IGTDG----------GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKK 160

Query: 187 NVADISKGSTVVIFGLGTVGLSVA-QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            +  +  GSTVV+ G+G +G  +A Q  +A   + +I VD + E  + A+  G    LN 
Sbjct: 161 ALPYLDPGSTVVVIGVGGLG-HIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNA 219

Query: 246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQ 282
           +D+   V + ++ +T G GAD   + +G    +  A +
Sbjct: 220 SDD---VVEEVRELTGGRGADAVIDFVGSDETLALAAK 254

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  120 bits (303), Expect = 7e-32
 Identities = 75/272 (27%), Positives = 118/272 (43%), Gaps = 55/272 (20%)

Query: 13  CKAAV--AWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITA----WETQAIFPRI 66
            KAAV   +G  +P  V++V V  P P E+ +K+  + +C +D+ A    W  +   P I
Sbjct: 1   MKAAVVEEFG-EKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLI 59

Query: 67  FGHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
            GHE +G+V +VGPGV+    G+ V +      C  C  C++     C            
Sbjct: 60  GGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCP----------- 108

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV------SSIAPLEKICLLSCGLS 179
           + + + +++ G          +F+EY +  +     +         APL         L 
Sbjct: 109 NQKNSGYTVDG----------TFAEYAIADARYVTPIPDGLSFEQAAPL---------LC 149

Query: 180 AGLGA--AWNVADISKGSTVVIFG----LGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 233
           AG+    A   A +  G  VVI G    LG +G+   Q AKA G  R+I +D   EK E 
Sbjct: 150 AGVTVYKALKKAGLKPGDWVVISGAGGGLGHLGV---QYAKAMGL-RVIAIDVGDEKLEL 205

Query: 234 AKAFGVTEFLNPNDNNEPVQQVIKRITDGGAD 265
           AK  G   F++   ++  V+ V +    GGA 
Sbjct: 206 AKELGADAFVDFKKSD-DVEAVKELTGGGGAH 236

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  120 bits (304), Expect = 9e-32
 Identities = 78/283 (27%), Positives = 117/283 (41%), Gaps = 48/283 (16%)

Query: 16  AVAW-GAGQPLVVEEVEVNPP---QPEEIRIKVVCTSLCRSDI-----TAWETQAIFPRI 66
           A+ W G      V   EV  P    P +  ++V  T++C SD+          +     I
Sbjct: 3   ALVWHG---KGDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKK--GDI 57

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHE  G+VE VGP V     G+ V+  F   C  C  CK    + C+            
Sbjct: 58  LGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCD------------ 105

Query: 127 DQQTRFSIKGKPVYHY--CAVSSFS-----------EYTVV---HSGCAVKVSSIAPLEK 170
              T  S +   +Y +    +  +S           EY  V     G   K+      EK
Sbjct: 106 --NTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGP-FKIPDDLSDEK 162

Query: 171 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK 230
              LS  L  G  AA   A++  G TV ++G G VGL  A+ AK  GA R+I +D  PE+
Sbjct: 163 ALFLSDILPTGYHAAEL-AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPER 221

Query: 231 CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
            E A++    E +N  + ++ V + ++ +T G G D   + +G
Sbjct: 222 LEMARSHLGAETINFEEVDDVV-EALRELTGGRGPDVCIDAVG 263

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  119 bits (301), Expect = 1e-31
 Identities = 78/265 (29%), Positives = 109/265 (41%), Gaps = 32/265 (12%)

Query: 24  PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI------TAWETQAIFPRIFGHEASGIVES 77
            LV+EEV V  P P E+ +KV    +C SD+          T+   P   GHE +G V  
Sbjct: 13  LLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTK--LPLTLGHEIAGTVVE 70

Query: 78  VGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGK 137
           VG GVT F  G+ V    +  C  C  C+  + N C            +       I G 
Sbjct: 71  VGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCL-----------NQGMPGLGIDG- 118

Query: 138 PVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTV 197
                     F+EY VV +   V V    P  +  + +  +     A     ++  G TV
Sbjct: 119 ---------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETV 169

Query: 198 VIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIK 257
           ++ GLG +GL+  Q AKA GA  +I VD   EK E AK  G  E LN  D++   +    
Sbjct: 170 LVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLDDSP--KDKKA 226

Query: 258 RITDGGADYSFECIGDTGMITTALQ 282
               GG D  F+ +G       A +
Sbjct: 227 AGLGGGFDVIFDFVGTQPTFEDAQK 251

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  115 bits (289), Expect = 8e-30
 Identities = 83/273 (30%), Positives = 113/273 (41%), Gaps = 26/273 (9%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQAIFP-RIFGHEA 71
           KA V  G G   V E        P +  +KV   ++C SD+  +       P  + GHE 
Sbjct: 2   KAVVFKGPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTPGFVLGHEF 61

Query: 72  SGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTR 131
            G V  VGP V     G+ V++ F   C  C  C+  +S  C   GL             
Sbjct: 62  VGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGL------------- 108

Query: 132 FSIKGKPVYHYCAVSSFSEYTVV--HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 189
           F   G P        + +EY  V    G  +K+      E   LL   L  G   A   A
Sbjct: 109 FGYAGSPNLD----GAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKR-A 163

Query: 190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 249
            +  G TV + G G VGL     A+  GA+R+  VD  PE+ E+A A G  E +N  D  
Sbjct: 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALG-AEPINFED-A 221

Query: 250 EPVQQVIKRITDG-GADYSFECIGDTGMITTAL 281
           EPV++V +  T+G GAD   E +G    +  A 
Sbjct: 222 EPVERV-REATEGRGADVVLEAVGGAAALDLAF 253

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score =  113 bits (285), Expect = 5e-29
 Identities = 77/274 (28%), Positives = 112/274 (40%), Gaps = 40/274 (14%)

Query: 16  AVAWGAGQPLVVEEVEVNPPQ---PEEIRIKVVCTSLCRSDITAWE--TQAIFPRIFGHE 70
                 G P  V   +V  P+   P +  +++  T++C SD+  +   T A    + GHE
Sbjct: 2   KAVV-YGGPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEPGLVLGHE 60

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
           A G VE VG  V     G+ V+  F   C  CR CK   +  C  +   R G        
Sbjct: 61  AMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAG-------- 112

Query: 131 RFSIKGKPVYHYCAVSSF----SEYTVV---HSGCAVKVSSIAPLEKICLLSCGLSAGLG 183
                    Y Y  +  +    +EY  V                 EK   L   LS    
Sbjct: 113 -------GAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLM--LSDIFP 163

Query: 184 AAWNVADISK---GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
             W+  +++    G TV +FG G VGL  A  A  RGASR+  VD  PE+ + A++ G  
Sbjct: 164 TGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI 223

Query: 241 EFLNPND--NNEPVQQVIKRITDGGADYSFECIG 272
               P D  + +PV+Q I  +  GG D + +C+G
Sbjct: 224 ----PIDFSDGDPVEQ-ILGLEPGGVDRAVDCVG 252

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  110 bits (276), Expect = 5e-28
 Identities = 89/285 (31%), Positives = 122/285 (42%), Gaps = 48/285 (16%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-----TAWETQAI-FPRIF 67
           KA V   AG    + EV V  P P E+ IKV+  S+C +D+       W    I  P IF
Sbjct: 2   KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIF 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVL--TVFIGECKTCRQCKSDKSNTCE---VLGLERRG 122
           GHE +G V  VG GVT    G++V   T  +  C  C QC++   + C+   +LG++  G
Sbjct: 62  GHEFAGEVVEVGEGVTRVKVGDYVSAETHIV--CGKCYQCRTGNYHVCQNTKILGVDTDG 119

Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGL 182
                                    F+EY VV      K     P E   + S  +   L
Sbjct: 120 C------------------------FAEYVVVPEENLWKNDKDIPPE---IAS--IQEPL 150

Query: 183 GAAWN---VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
           G A +     D+S G +V+I G G +GL     AKA GAS +I  D NP + E AK  G 
Sbjct: 151 GNAVHTVLAGDVS-GKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGA 209

Query: 240 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
              +NP +  E V +V       G D   E  G+   I   L++ 
Sbjct: 210 DVVINPRE--EDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKAL 252

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  108 bits (271), Expect = 3e-27
 Identities = 77/274 (28%), Positives = 112/274 (40%), Gaps = 46/274 (16%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIR-----IKVVCTSLCRSD--ITAWETQAIFP-R 65
           KA V  G G+ +  E+     P+P         +K++ T++C +D  I   +   + P R
Sbjct: 2   KALVYHGPGK-ISWEDR----PKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGR 56

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE----VLGLERR 121
           I GHE  G+VE VG  VT F  G+ VL   I  C TC  C+    + CE    +LG    
Sbjct: 57  ILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLID 116

Query: 122 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYT-VVHSGCA-VKVSSIAPLEKICLLSCGLS 179
           G                          +EY  + H+  +  K+      E   +LS  L 
Sbjct: 117 GTQ------------------------AEYVRIPHADNSLYKLPEGVDEEAAVMLSDILP 152

Query: 180 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
            G         +  G TV I G G VGL+    A+    S+II VD +  + E AK  G 
Sbjct: 153 TGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA 212

Query: 240 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
           T  +N    +    + +  +TDG G D   E +G
Sbjct: 213 THTVNSAKGD--AIEQVLELTDGRGVDVVIEAVG 244

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  107 bits (269), Expect = 6e-27
 Identities = 80/273 (29%), Positives = 114/273 (41%), Gaps = 50/273 (18%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWE------------- 58
           KAA     G+PL  EEVE++ P+P   E+ +KV    +C SD+  W+             
Sbjct: 2   KAAAVVEPGKPL--EEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSL 59

Query: 59  --TQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVF--IGECKTCRQCKSDKSNTCE 114
                  P + GHE  G V +VGP   +   G+ VL V+  IG C  C  C +   N C 
Sbjct: 60  DDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVL-VYPWIG-CGECPVCLAGDENLCA 117

Query: 115 VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV-HSGCAVKVSSIAPLEKICL 173
                         + R     +          ++EY +V HS   V    + P      
Sbjct: 118 --------------KGRALGIFQDGG-------YAEYVIVPHSRYLVDPGGLDPALA-AT 155

Query: 174 LSC-GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 232
           L+C GL+A   A   +  +     VVI G G +GL      KA G + II VD +  K E
Sbjct: 156 LACSGLTA-YSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLE 214

Query: 233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGAD 265
            AKA G    +N +D +   +++IK    GG D
Sbjct: 215 AAKAAGADVVVNGSDPDA-AKRIIK-AAGGGVD 245

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  106 bits (266), Expect = 1e-26
 Identities = 76/271 (28%), Positives = 107/271 (39%), Gaps = 50/271 (18%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPR-----IFG 68
           KA +  G  Q   +EEV    P  +E+ IKV    LC  D+     Q  +PR     I G
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQL--QGFYPRMKYPVILG 59

Query: 69  HEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMH 125
           HE  G VE VG  V  F  G+ V ++      TC  C+S +   C+     G E  G   
Sbjct: 60  HEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGF-- 117

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
                                 F+EY  V     VKV      E   ++ C     +   
Sbjct: 118 ----------------------FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGM-VYRG 154

Query: 186 WNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG---VTE 241
              A + KG TV++ G  G VG+   Q AKA GA ++I V ++  K +    +    +  
Sbjct: 155 LRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKYADYVIVG 213

Query: 242 FLNPNDNNEPVQQVIKRITDGGADYSFECIG 272
               +  +E V    K+I  GGAD   E +G
Sbjct: 214 ----SKFSEEV----KKI--GGADIVIETVG 234

Length = 334

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  105 bits (264), Expect = 3e-26
 Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 14  KAAVAWGAG----QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---TQAIFPRI 66
           KA V    G     PL + EV V  P P E+ IKV    +CR+D+   E        P I
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLI 61

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMH 125
            GHE  G VE+VGPGVT F+ G+ V   ++G  C  CR C+S + N C            
Sbjct: 62  PGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLC-----------D 110

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA- 184
           + + T +++ G           ++EY V     A  +      E+   L C   AG+   
Sbjct: 111 NARFTGYTVDG----------GYAEYMVADERFAYPIPEDYDDEEAAPLLC---AGIIGY 157

Query: 185 -AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 238
            A  +A +  G  + ++G G       Q A+ +GA  +     + E  E A+  G
Sbjct: 158 RALKLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELG 211

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  104 bits (262), Expect = 4e-26
 Identities = 71/259 (27%), Positives = 107/259 (41%), Gaps = 39/259 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ---AIFPRIFGHE 70
           KAAV   AG PL  EEV V  P P E+ IK+    +C +D+ A E     + +P + GHE
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60

Query: 71  ASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 129
             G V  VG GV     G+ V +   +G C  C  C+    N C+               
Sbjct: 61  IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQ-----------KAVN 109

Query: 130 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN-- 187
           T ++ +G           ++EY V  +   V +    PL +   L C   AG+   ++  
Sbjct: 110 TGYTTQG----------GYAEYMVADAEYTVLLPDGLPLAQAAPLLC---AGI-TVYSAL 155

Query: 188 -VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
             A    G  V + G+G +G    Q A+A G    + +  +P+K E A+  G  E ++  
Sbjct: 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSG 214

Query: 247 DNNEPVQQVIKRITDGGAD 265
              +           GGAD
Sbjct: 215 AELDEQA------AAGGAD 227

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score =  105 bits (263), Expect = 5e-26
 Identities = 78/268 (29%), Positives = 118/268 (44%), Gaps = 42/268 (15%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ----------AIFPRIFGHEASGI 74
           L VE+V V   +P+EI I+V    +C SDI  +ET             FP + GHE SG+
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGV 98

Query: 75  VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSI 134
           VE  G  V  F +G+ V    +  C  CR C+S   N C+ L               FS 
Sbjct: 99  VEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE-----------LGFSA 147

Query: 135 KGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL--EKICLLSCGLSAGLGAAWNV---- 188
            G          +F+EY  V++  A +++ +  +  E     +  L      A+N     
Sbjct: 148 DG----------AFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIR 197

Query: 189 -ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
                 G+ VV++G G +GL+    AKA GAS++I  + + E+   AK  G     NP  
Sbjct: 198 GGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTK 257

Query: 248 --NNEPVQQVIKRITDG-GADYSFECIG 272
             +    ++V++ +T G GAD   E  G
Sbjct: 258 MRDCLSGEKVME-VTKGWGADIQVEAAG 284

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score =  104 bits (261), Expect = 6e-26
 Identities = 77/282 (27%), Positives = 109/282 (38%), Gaps = 54/282 (19%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIF---------- 63
           +A V  G      +EEV V  P P EI +KV    +C  DI  +     F          
Sbjct: 2   RAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60

Query: 64  --PRIFGHEASGIVESVGPGVTE--FNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VL 116
             P I GHE  G V  +G G  E     G+ V++  I  C  CR C   +   C+   + 
Sbjct: 61  KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLY 120

Query: 117 GLERR--GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL- 173
           G +    G M                       F +  +VH     KV    P E   L 
Sbjct: 121 GFQNNVNGGM------------------AEYMRFPKEAIVH-----KVPDDIPPEDAILI 157

Query: 174 --LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC 231
             L+C L A      + A+I     VV+ G G +GL +   A+ +   ++I +D   E+ 
Sbjct: 158 EPLACALHAV-----DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERL 212

Query: 232 EKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
             A+ FG    LNP + +  V + IK +T G G D   E  G
Sbjct: 213 ALARKFGADVVLNPPEVD--VVEKIKELTGGYGCDIYIEATG 252

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score =  101 bits (254), Expect = 4e-25
 Identities = 66/262 (25%), Positives = 97/262 (37%), Gaps = 66/262 (25%)

Query: 20  GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI------TAWETQAIFPRIFGHEASG 73
           G G+   VEE     P P ++ ++V    +C SD+        W      P   GHE  G
Sbjct: 3   GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWG 61

Query: 74  IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFS 133
            V ++GPGV     G                   D+     V GL               
Sbjct: 62  RVVALGPGVRGLAVG-------------------DR-----VAGLSGGA----------- 86

Query: 134 IKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL--LSCGLSAGLGAAWNVADI 191
                         F+EY +  +  AV + S+   +      L C L+           I
Sbjct: 87  --------------FAEYDLADADHAVPLPSLLDGQAFPGEPLGCALNVF-----RRGWI 127

Query: 192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 251
             G TV + G G +GL   Q A A GA R+I +D  P +   A+  G TE     D++E 
Sbjct: 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEV--VTDDSEA 185

Query: 252 VQQVIKRITDG-GADYSFECIG 272
           + + ++ +T G GAD   E +G
Sbjct: 186 IVERVRELTGGAGADVVIEAVG 207

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score =  102 bits (255), Expect = 4e-25
 Identities = 82/282 (29%), Positives = 118/282 (41%), Gaps = 36/282 (12%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPP--QPEEIRIKVVCTSLCRSDITAW--ETQAIFPRIFGH 69
           +A V  G G  + VEEV  +P   +P +  I+VV T +C SD+  +   +    P   GH
Sbjct: 2   RATVIHGPGD-IRVEEVP-DPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPTRAPAPIGH 59

Query: 70  EASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 129
           E  G+VE VG  VT    G+ V+  F     TC  C++  + +C        G      Q
Sbjct: 60  EFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCV--HGGFWGAFVDGGQ 117

Query: 130 TRFSIKGKPVYHYCAVSSFSEYTVVHS-GCAVKVSSIAP-----LEKICLLSCGLSAGLG 183
             +                    V  + G  VKV          L  +  LS  +  G  
Sbjct: 118 GEY------------------VRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHH 159

Query: 184 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
           AA   A +  GSTVV+ G G VGL     AK  GA RII +  + ++   A+ FG T+ +
Sbjct: 160 AA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIV 218

Query: 244 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSC 284
                 E V +V + +T G GAD   EC+G    +  A+   
Sbjct: 219 -AERGEEAVARV-RELTGGVGADAVLECVGTQESMEQAIAIA 258

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score =  101 bits (252), Expect = 1e-24
 Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 50/238 (21%)

Query: 37  PEEIRIKVVCTSLCRSDITAWETQAIFPRIF-----------GHEASGIVESVGPGVTEF 85
            +++ +KV  + LC SDI         PRIF           GHE SG VE+VG GV + 
Sbjct: 25  QDDVLVKVASSGLCGSDI---------PRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDL 75

Query: 86  NEGEHVLTVFIGECKTCRQCKSDKSNTC---EVLGLERRGVMHSDQQTRFSIKGKPVYHY 142
           + G+ V  V +  C TC +C     + C   + +G  R G                    
Sbjct: 76  HPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDG-------------------- 115

Query: 143 CAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL 202
                 +EY VV       + +  P+E    +   ++ GL  A+++A   +G  V+I G 
Sbjct: 116 ----GNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGL-HAFHLAQGCEGKNVIIIGA 169

Query: 203 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP-VQQVIKRI 259
           GT+GL   Q A A GA  +  +D N EK   AK+ G  +  N  + + P +Q V++ +
Sbjct: 170 GTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLREL 227

Length = 347

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  100 bits (250), Expect = 2e-24
 Identities = 69/268 (25%), Positives = 104/268 (38%), Gaps = 58/268 (21%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWETQAI----FPRIF 67
           KA V    G P V++ VEV  P+P   E+ ++V    +   D+   +  A      P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           G EA+G+V +VG GVT F  G+                         V  L         
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGD------------------------RVAAL--------- 88

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC-GLSAGLGAAW 186
                               ++EY VV +   V +      E+   L   GL+A L    
Sbjct: 89  ------------GGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFD 136

Query: 187 NVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             A +  G TV++ G  G VG +  Q AKA GA  ++ V ++ EK E  K  G    +N 
Sbjct: 137 -RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINY 194

Query: 246 NDNNEPVQQVIKRITDG-GADYSFECIG 272
            +  E   + ++ +T G G D   + +G
Sbjct: 195 RE--EDFVEQVRELTGGKGVDVVLDTVG 220

Length = 326

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 99.6 bits (249), Expect = 3e-24
 Identities = 71/282 (25%), Positives = 108/282 (38%), Gaps = 62/282 (21%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIF 67
           KA V  G G P  L   ++    P P+E+ ++V   +L   D+             P I 
Sbjct: 2   KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVM 124
           G + +G+VE+VGPGVT    G+ V+      C  C  C + + N C    +LG    G  
Sbjct: 62  GSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGY 121

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS----- 179
                                   +EY  V    A  +  I            LS     
Sbjct: 122 ------------------------AEYVAVP---ARNLLPIPD---------NLSFEEAA 145

Query: 180 -AGL--GAAWNV----ADISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKC 231
            A L    AW++    A +  G TV++ G G+ VG +  Q AK  GA  +I    + +K 
Sbjct: 146 AAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKL 204

Query: 232 EKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
           E+AK  G    ++     E   + ++ +T   G D   E +G
Sbjct: 205 ERAKELGADYVIDY--RKEDFVREVRELTGKRGVDVVVEHVG 244

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 97.8 bits (244), Expect = 9e-24
 Identities = 74/262 (28%), Positives = 112/262 (42%), Gaps = 31/262 (11%)

Query: 27  VEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVT 83
           + EV    P P E+ IKV    +C SD+  ++        P + GHE SG +  VGP V 
Sbjct: 16  LREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVE 75

Query: 84  EFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHY 142
            +  G+ V++      C  C  C+    N C      R+G+                   
Sbjct: 76  GWKVGDRVVSETTFSTCGRCPYCRRGDYNLCP----HRKGI-----------------GT 114

Query: 143 CAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL 202
            A   F+EY +V      ++     LE   L    L+  + A    + I  G TVV+FG 
Sbjct: 115 QADGGFAEYVLVPEESLHELPENLSLEAAALTE-PLAVAVHAVAERSGIRPGDTVVVFGP 173

Query: 203 GTVGLSVAQGAKARGASRII-GVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD 261
           G +GL  AQ AK +GA+ ++ G + +  + + AK  G       N   E + +++  ITD
Sbjct: 174 GPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADA---VNGGEEDLAELVNEITD 230

Query: 262 G-GADYSFECIGDTGMITTALQ 282
           G GAD   EC G    +  AL+
Sbjct: 231 GDGADVVIECSGAVPALEQALE 252

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 94.2 bits (234), Expect = 3e-22
 Identities = 79/276 (28%), Positives = 114/276 (41%), Gaps = 45/276 (16%)

Query: 21  AGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-----TAWETQAI-FPRIFGHEASGI 74
            G    + EV V  P P E+ IKV+ TS+C +D+       W    I  P++ GHE +G 
Sbjct: 7   PGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGE 66

Query: 75  VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSDQQTR 131
           V  +GPGV     G++V       C  C  C+  + + C+   + G++  G         
Sbjct: 67  VVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGC-------- 118

Query: 132 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA-- 189
                           F+EY VV +    K     P E        +   LG A +    
Sbjct: 119 ----------------FAEYAVVPAQNIWKNPKSIPPE-----YATIQEPLGNAVHTVLA 157

Query: 190 -DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 248
             IS G +V++ G G +GL     AKA GA  +I  D N  + E AK  G T  +NP   
Sbjct: 158 GPIS-GKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK- 215

Query: 249 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQS 283
            E V + +  +TDG G D   E  G    +   LQ+
Sbjct: 216 -EDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQA 250

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 93.7 bits (234), Expect = 5e-22
 Identities = 61/239 (25%), Positives = 89/239 (37%), Gaps = 36/239 (15%)

Query: 21  AGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA---WETQAIFPRIFGHEASGIVE 76
           A   L     E  P  P+++ IK+    +C SD+ T    W     +P + GHE  GIV 
Sbjct: 8   ASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWG-PTKYPLVPGHEIVGIVV 66

Query: 77  SVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIK 135
           +VG  VT+F  G+ V +   +  C TC QCKS +   C               +   +  
Sbjct: 67  AVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCP--------------KGVVTYN 112

Query: 136 GKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-------AWNV 188
           GK          ++++ VV      K+           L C      G           V
Sbjct: 113 GKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCA-----GITVYSPLKRNGV 167

Query: 189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
                G  V + G+G +G    + AKA GA  +     +P K E A   G  EF+   D
Sbjct: 168 G---PGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD 222

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 92.6 bits (231), Expect = 1e-21
 Identities = 71/283 (25%), Positives = 110/283 (38%), Gaps = 73/283 (25%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-----TAWETQAI-FPRIF 67
           KA V   A   L + +V V  P P ++ IKV  T++C +D+       W  + I  P + 
Sbjct: 2   KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVV 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKSDKSNTCE---VLGLER 120
           GHE  G V  VG  VT F  G+ V     GE    C  CR C++ + + C     +G+ R
Sbjct: 62  GHEFVGEVVEVGSEVTGFKVGDRV----SGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNR 117

Query: 121 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA 180
            G                        +F+EY V+ +    K+    P +           
Sbjct: 118 PG------------------------AFAEYLVIPAFNVWKIPDDIPDD----------- 142

Query: 181 GLGA-------------AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 227
            L A             ++++     G  V+I G G +G+  A  AK  GA  ++  D N
Sbjct: 143 -LAAIFDPFGNAVHTALSFDLV----GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVN 197

Query: 228 PEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 269
             + E A+  G T  +N     E ++ V+  +    G D   E
Sbjct: 198 EYRLELARKMGATRAVNVAK--EDLRDVMAELGMTEGFDVGLE 238

Length = 341

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 89.6 bits (223), Expect = 1e-20
 Identities = 74/265 (27%), Positives = 103/265 (38%), Gaps = 32/265 (12%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI------FPRIFGHEASGIVESV 78
           L VEE     P P E+R++V    +C SD+  ++           P + GHE SG+VE+V
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV 68

Query: 79  GPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGK 137
           GPGVT    G+ V  V     C TC  C++ + N C                 RF   G 
Sbjct: 69  GPGVTGLAPGQRV-AVNPSRPCGTCDYCRAGRPNLCL--------------NMRF--LGS 111

Query: 138 PVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTV 197
            +        F EY VV +   V +     L     L+  L+  L A  N A    G  V
Sbjct: 112 AMRFPHVQGGFREYLVVDASQCVPLPDGLSLR-RAALAEPLAVALHAV-NRAGDLAGKRV 169

Query: 198 VIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP-NDNNEPVQQVI 256
           ++ G G +G  V   A+  GA+ I+  D        A+A G  E +N   D         
Sbjct: 170 LVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADK 229

Query: 257 KRITDGGADYSFECIGDTGMITTAL 281
                   D  FE  G    + +AL
Sbjct: 230 GDF-----DVVFEASGAPAALASAL 249

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 205 VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-G 263
           VGL+  Q AKA GA+R+I VD + EK E AK  G    +N  D  E   + ++ +T G G
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRD--EDFVERVRELTGGRG 59

Query: 264 ADYSFECIGDTGMITTALQSC 284
            D   +C+G    +  AL+  
Sbjct: 60  VDVVIDCVGAPATLEQALELL 80

Length = 131

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 83.1 bits (206), Expect = 3e-20
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 37  PEEIRIKVVCTSLCRSDI---TAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLT 93
           P E+ ++V    +C SD+            P I GHE +GIVE VGPGVT    G+ V+ 
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60

Query: 94  VFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 150
             +  C  C  C+  + N C     LG+   G                         F+E
Sbjct: 61  YPLIPCGKCAACREGRENLCPNGKFLGVHLDG------------------------GFAE 96

Query: 151 YTVVHSGCAVKV 162
           Y VV +   V +
Sbjct: 97  YVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 86.0 bits (214), Expect = 2e-19
 Identities = 70/262 (26%), Positives = 104/262 (39%), Gaps = 70/262 (26%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQAIFPRIFGHEASGIVESV 78
           L  E+V V  P P E+ ++     +       RS +         P + G E +G+VE+V
Sbjct: 14  LEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLP----LPFVLGVEGAGVVEAV 69

Query: 79  GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKP 138
           GPGVT F  G+ V                                               
Sbjct: 70  GPGVTGFKVGDRV----------------------------------------------- 82

Query: 139 VYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAG--LGAAWNVADISKGS 195
            Y      +++EY VV +   VK+   I+      LL  GL+A   L   + V     G 
Sbjct: 83  AYAG-PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVK---PGD 138

Query: 196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQ 254
           TV++    G VGL + Q AKA GA  +IG  ++ EK E A+A G    +N  D +   + 
Sbjct: 139 TVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRDEDFVER- 196

Query: 255 VIKRITDG-GADYSFECIG-DT 274
            ++ IT G G D  ++ +G DT
Sbjct: 197 -VREITGGRGVDVVYDGVGKDT 217

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 57/224 (25%), Positives = 77/224 (34%), Gaps = 63/224 (28%)

Query: 64  PRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV 123
           P   G+ + G V  VG GVT F  G+ V                                
Sbjct: 21  PLPPGYSSVGRVVEVGSGVTGFKPGDRVF------------------------------C 50

Query: 124 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 183
                            H       +E  VV +   V +    P E+  L +   +A L 
Sbjct: 51  FGP--------------H-------AERVVVPANLLVPLPDGLPPERAALTALAATA-LN 88

Query: 184 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
              + A+   G  V + GLG VGL  AQ AKA GA  ++GVD +  + E A+A G     
Sbjct: 89  GVRD-AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA--- 144

Query: 244 NPNDNNEPVQQ-VIKRITDGGADYSFECIGDTGMITTALQSCCD 286
                 +PV       I   GAD   E  G    + TAL+   D
Sbjct: 145 ------DPVAADTADEIGGRGADVVIEASGSPSALETALRLLRD 182

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 84.2 bits (209), Expect = 9e-19
 Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 57/269 (21%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI---FPRIFGHE 70
           KA      G PL + E +V  P P E+ IKV    +C SD    E       +PR+ GHE
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61

Query: 71  ASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHS 126
             G +++VG GV+ +  G+ V +    G C TC  C+      CE   V G+ R G    
Sbjct: 62  VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDG---- 117

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV------SSIAPLEKICLLSCGLSA 180
                                ++EY +  +    ++      +  APL         L A
Sbjct: 118 --------------------GYAEYMLAPAEALARIPDDLDAAEAAPL---------LCA 148

Query: 181 GLGAAWNV---ADISKGSTVVIFGLGTVG-LSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
           G+   +N    +    G  V + G+G +G L+V Q A   G  R + +    +K + A+ 
Sbjct: 149 GV-TTFNALRNSGAKPGDLVAVQGIGGLGHLAV-QYAAKMGF-RTVAISRGSDKADLARK 205

Query: 237 FGVTEFLNPNDNNEPVQQVIKRITDGGAD 265
            G   +++ +   E V + ++ +  GGA 
Sbjct: 206 LGAHHYIDTSK--EDVAEALQEL--GGAK 230

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 83.8 bits (208), Expect = 1e-18
 Identities = 69/284 (24%), Positives = 99/284 (34%), Gaps = 91/284 (32%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPE----EIRIKVVCTSLCRSDIT------AWETQAIF 63
           KA      G P V+E  +V  P PE    E+ +KV    +   D+               
Sbjct: 2   KAVRIHEYGGPEVLELADV--PTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTL 59

Query: 64  PRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV 123
           P I GH+ +G+V +VGPGVT F  G+                        EV G+     
Sbjct: 60  PLIPGHDVAGVVVAVGPGVTGFKVGD------------------------EVFGM----- 90

Query: 124 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS---- 179
                 T F+  G          +++EY VV          +A           LS    
Sbjct: 91  ------TPFTRGG----------AYAEYVVVP------ADELALKPA------NLSFEEA 122

Query: 180 -----AGLGAAWN----VADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPE 229
                AGL  AW     +  +  G TV+I G  G VG    Q AKARGA R+I    +  
Sbjct: 123 AALPLAGL-TAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIAT-ASAA 179

Query: 230 KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 273
             +  ++ G  E ++            +    GG D   + +G 
Sbjct: 180 NADFLRSLGADEVIDYTK-----GDFERAAAPGGVDAVLDTVGG 218

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 84.3 bits (209), Expect = 1e-18
 Identities = 65/288 (22%), Positives = 104/288 (36%), Gaps = 52/288 (18%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIF---------- 63
           +AAV      PLVV +V    P P ++ +KV+   +C SD+ A                 
Sbjct: 2   RAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLM 59

Query: 64  ----PRIFGHEASGIVESVGPGV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL 118
                 + GHE  G V   GPG   +   G  V ++ +  C     C    S        
Sbjct: 60  DLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPE------ 113

Query: 119 ERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGL 178
                                    A   ++EY ++     ++V     +E   L    L
Sbjct: 114 -------------------------APGGYAEYMLLSEALLLRVPDGLSMEDAALTE-PL 147

Query: 179 SAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 238
           + GL A    A ++ G   ++ G G +GL+V    KARG   I+  D +PE+   A A G
Sbjct: 148 AVGLHAV-RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMG 206

Query: 239 VTEFLNPNDNNEP--VQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
               ++P  ++        + R         FEC+G  G+I   ++  
Sbjct: 207 ADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGA 254

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 34/238 (14%)

Query: 20  GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW----ETQAIFPRIFGHEASGIV 75
             G+P+V   VE+      ++ +KV    +C +D++ +     T    P   GHE SG V
Sbjct: 6   EPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRV 65

Query: 76  ESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIK 135
              G G   +  G+ V+   +  C  C  CK+ +   C      R   M  +      ++
Sbjct: 66  IQAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTIC------RAQKMPGN-----DMQ 113

Query: 136 GKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIA----PLEKICLLSCGLSAGLGAAWNVA 189
           G           F+ + VV +   C V  + +A    PLE + +++  ++    AA   A
Sbjct: 114 G----------GFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQ-A 162

Query: 190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
            + KG  V++ G G VG  + Q AKA GA+ ++ +D +PEK E  K FG    LNP D
Sbjct: 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKD 219

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 82.2 bits (203), Expect = 3e-18
 Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 31/228 (13%)

Query: 66  IFGHEASGIVESVGPGVTEFNEGEH-------VLTVFIGECKTCRQCKSDKSNTCEVLGL 118
           + GHE  G V ++  G T  ++G         V +V +  C  C +C+      C+ L  
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVP-CGRCFRCRRGLPQKCDSL-- 57

Query: 119 ERRGVMHSDQQTRFSIKGKPVYHYCAVS-SFSEYTVVHSGCA-VKVSSIAPLEKICLLSC 176
             R   H           + +     +S  ++E+  + +G A V V    P        C
Sbjct: 58  --RKYGH-----------EALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGC 104

Query: 177 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
             +  + A     D+ KG  V++ G G +GL+ A  A A GA+R++  D +P++ E A +
Sbjct: 105 ATATVMAALEAAGDL-KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163

Query: 237 FGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQS 283
           FG T    P    E + +    + +G G D + E  G T  +   L+S
Sbjct: 164 FGATALAEP----EVLAERQGGLQNGRGVDVALEFSGATAAVRACLES 207

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 82.2 bits (204), Expect = 6e-18
 Identities = 72/274 (26%), Positives = 109/274 (39%), Gaps = 54/274 (19%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT----AWETQAIFPRIFGHEASGIVESVGP 80
           L + E  V  P P E+ ++V   SL   D+      +      P I   + +G V +VG 
Sbjct: 15  LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGE 74

Query: 81  GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY 140
           GVT F  G+ V+  F            D+++    LG    GV+                
Sbjct: 75  GVTRFKVGDRVVPTFFPNWLDGPPTAEDEASA---LGGPIDGVL---------------- 115

Query: 141 HYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN----VADISKGST 196
                   +EY V+     V+       E+   L C   AGL  AWN    +  +  G T
Sbjct: 116 --------AEYVVLPEEGLVRAPDHLSFEEAATLPC---AGL-TAWNALFGLGPLKPGDT 163

Query: 197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVI 256
           V++ G G V L   Q AKA GA R+I   ++ EK E+AKA G    +N     +  ++V 
Sbjct: 164 VLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRTTPDWGEEV- 221

Query: 257 KRITDG-GADY------------SFECIGDTGMI 277
            ++T G G D+            S + +   G+I
Sbjct: 222 LKLTGGRGVDHVVEVGGPGTLAQSIKAVAPGGVI 255

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 75/268 (27%), Positives = 109/268 (40%), Gaps = 53/268 (19%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIF----PRIFGH 69
           KAAV        VV E  + P +  E  +K+    +C +D+        F     RI GH
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHV--ANGDFGDKTGRILGH 59

Query: 70  EASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 128
           E  GIV+ VGPGVT    G+ V +  F   C  C  C + +   C       R V ++  
Sbjct: 60  EGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLC-------RSVKNAG- 111

Query: 129 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV---------SSIAPLEKICLLSCGLS 179
              +++ G            +E  +V +  AVKV         SSI         +C   
Sbjct: 112 ---YTVDG----------GMAEQCIVTADYAVKVPEGLDPAQASSI---------TC--- 146

Query: 180 AGLGA--AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 237
           AG+    A  V+ I  G  + I+G G +G    Q AK    +++I VD N +K   AK  
Sbjct: 147 AGVTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV 206

Query: 238 GVTEFLNPNDNNEPVQQVIKRITDGGAD 265
           G    +N     E V ++I+    GGA 
Sbjct: 207 GADLTINSKR-VEDVAKIIQ-EKTGGAH 232

Length = 338

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 79.8 bits (197), Expect = 4e-17
 Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 37/242 (15%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ---AIFPRIFGHEASGIVESVGPG 81
           L +EE  +  P   E+R+KV    +C SD   +      A +PR+ GHE  G++++VG G
Sbjct: 12  LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 71

Query: 82  VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSDQQTRFSIKGKP 138
           V     GE V    +  C  C  C   K N C    VLG+ R G                
Sbjct: 72  VDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDG---------------- 115

Query: 139 VYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTV 197
                    FSEY VV +  A ++  +IA    + +    ++A +         ++    
Sbjct: 116 --------GFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGRTGP---TEQDVA 164

Query: 198 VIFGLGTVGLSVAQGAK-ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVI 256
           +I+G G VGL++ Q  K       +I  D   E+   AK  G    +  N+  EP+ + +
Sbjct: 165 LIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVI--NNAQEPLGEAL 222

Query: 257 KR 258
           + 
Sbjct: 223 EE 224

Length = 339

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 79.1 bits (195), Expect = 1e-16
 Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 32/276 (11%)

Query: 18  AWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIF------PRIFGHE 70
           AW  G   L ++  ++ P  P ++R+++    +C SD+   +T          P + GHE
Sbjct: 21  AWLVGVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHE 80

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
            +GI+E VG  V     G+ V       C  C  CK  + N C                 
Sbjct: 81  CAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCP---------------- 124

Query: 131 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD 190
                  P  H     S +   V  +    K+     LE+  +    LS G+ A    A+
Sbjct: 125 EMKFFATPPVH----GSLANQVVHPADLCFKLPENVSLEEGAMCE-PLSVGVHAC-RRAN 178

Query: 191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 250
           I   + V++ G G +GL     A+A GA RI+ VD + E+   AK  G  E +  + N E
Sbjct: 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIE 238

Query: 251 PVQQVIKRITD---GGADYSFECIGDTGMITTALQS 283
            V+  ++ I     GG D SF+C+G    ++TAL++
Sbjct: 239 DVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEA 274

Length = 364

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 62/257 (24%), Positives = 95/257 (36%), Gaps = 58/257 (22%)

Query: 25  LVVEEVEVNPPQPEEIRIKVV------CTSLCRSDITAWETQAIFPRIFGHEASGIVESV 78
           L +EE+ V  P   E+ I+V         ++ R            P   G+EA+G+VE+V
Sbjct: 15  LRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIE--PPPLPARLGYEAAGVVEAV 72

Query: 79  GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKP 138
           G GVT F  G+ V  +                                  Q         
Sbjct: 73  GAGVTGFAVGDRVSVI----------------------------PAADLGQ--------- 95

Query: 139 VYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTV 197
            Y   A     EY +V +   VK+   ++ +E   L    L+A        A +  G +V
Sbjct: 96  -YGTYA-----EYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVEL-AGLRPGDSV 148

Query: 198 VIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVI 256
           +I     +VGL+  Q A A GA  +I      EK +   A G    +  ++  E +   +
Sbjct: 149 LITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTDE--EDLVAEV 205

Query: 257 KRITDG-GADYSFECIG 272
            RIT G G D  F+ +G
Sbjct: 206 LRITGGKGVDVVFDPVG 222

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 71/268 (26%), Positives = 106/268 (39%), Gaps = 58/268 (21%)

Query: 13  CKAAVAWGAGQPLVV--EEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQAI-FPRIF 67
            KA V    G  L +  EE+E+  P   E+ +KV    L   D  + AW   A  +P + 
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVP 60

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           G + +G+V +VG  VT +  G+                               R   H+ 
Sbjct: 61  GVDGAGVVVAVGAKVTGWKVGD-------------------------------RVAYHAS 89

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAW 186
                +  G          SF+EYTVV +   + +  S++  E   L   GL+A   A +
Sbjct: 90  ----LARGG----------SFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTA-YQALF 134

Query: 187 NVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
               I  G T++I G  G VG    Q AK  G  R+I    +    E  K+ G    ++ 
Sbjct: 135 KKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGADHVIDY 192

Query: 246 NDNNEPVQQVIKRITDG-GADYSFECIG 272
           ND +  V + IK IT G G D   + +G
Sbjct: 193 NDED--VCERIKEITGGRGVDAVLDTVG 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 74.1 bits (183), Expect = 4e-15
 Identities = 70/275 (25%), Positives = 107/275 (38%), Gaps = 75/275 (27%)

Query: 14  KAAV--AWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI--TAWETQAIFPRIF-- 67
           KA V    G  + LV+EEV   P  P E+RI+V    +   D+     + Q   P  F  
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVP 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           G E +G+VE+VG GVT F  G+ V+                         L  +G     
Sbjct: 62  GSEVAGVVEAVGEGVTGFKVGDRVV------------------------ALTGQG----- 92

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
                               F+E  VV +     +      E+        +A L   + 
Sbjct: 93  -------------------GFAEEVVVPAAAVFPLPDGLSFEE--------AAALPVTYG 125

Query: 188 V--------ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 238
                    A +  G TV++ G  G VGL+  Q AKA GA R+I   ++ EK   A+A G
Sbjct: 126 TAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALG 184

Query: 239 VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
               ++  D    +++ +K +T G G D  ++ +G
Sbjct: 185 ADHVIDYRD--PDLRERVKALTGGRGVDVVYDPVG 217

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 70/294 (23%), Positives = 101/294 (34%), Gaps = 74/294 (25%)

Query: 14  KAAVAWGA-GQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQAIFPRIFGHE 70
           KAAV  G  G  LVV +V V  P P+E+ +KV   +L   D     +     +P I G +
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFIPSYPAILGCD 61

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
            +G V  VG GVT F  G+ V                       V G       +     
Sbjct: 62  FAGTVVEVGSGVTRFKVGDRVAGF--------------------VHGGNPNDPRN----- 96

Query: 131 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA---------G 181
                           +F EY V  +    K+      E+   L  GL           G
Sbjct: 97  ---------------GAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLG 141

Query: 182 LGAAW-NVADISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKC-----EKA 234
           L       +  SKG  V+I+G  + VG    Q AK  G  ++I              +  
Sbjct: 142 LPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITT------ASPKNFDLV 194

Query: 235 KAFGVTEFLNPNDNNEP-VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV 287
           K+ G        D ++P V + I+  T G   Y+ +CI        + Q C + 
Sbjct: 195 KSLGADAVF---DYHDPDVVEDIRAATGGKLRYALDCISTPE----SAQLCAEA 241

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 70/260 (26%), Positives = 99/260 (38%), Gaps = 53/260 (20%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSD---ITAWETQAIFPRIFGHEASGIVESVGPG 81
           L VE+V+   P P E+ I+V    +   D   I A + + + P I G E +G+VE VG  
Sbjct: 14  LKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPM-PHIPGAEFAGVVEEVGDH 72

Query: 82  VTEFNEGEHVLT---VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKP 138
           V    +G+ V+    VF G   TC  C S     C   G                +    
Sbjct: 73  VKGVKKGDRVVVYNRVFDG---TCDMCLSGNEMLCRNGG-------------IIGVVSNG 116

Query: 139 VYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-----AWNVADISK 193
            Y        +EY VV      K+      E         S  + A     A   A +  
Sbjct: 117 GY--------AEYIVVPEKNLFKIPDSISDE------LAASLPVAALTAYHALKTAGLGP 162

Query: 194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPV 252
           G TVV+FG  G  G+   Q AK  GA  +I V       +  K FG  E ++     + V
Sbjct: 163 GETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSRK----DWLKEFGADEVVDY----DEV 213

Query: 253 QQVIKRITDGGADYSFECIG 272
           ++ +K IT   AD     +G
Sbjct: 214 EEKVKEIT-KMADVVINSLG 232

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 68.3 bits (167), Expect = 5e-13
 Identities = 66/236 (27%), Positives = 102/236 (43%), Gaps = 15/236 (6%)

Query: 42  IKVVCTSLCRSD--ITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGEC 99
           +KVV T++C SD  +    T A    + GHE +G V   G  V     G+ V   F   C
Sbjct: 38  LKVVTTNICGSDQHMVRGRTTAPTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIAC 97

Query: 100 KTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA 159
             CR CK   +  C  +   R G  +        + G+  Y     + F+         A
Sbjct: 98  GRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQA 157

Query: 160 VKVSSIAPLEKI---CLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKAR 216
                   LEKI    +LS     G   A   A +  GSTV I G G VGL+ A  A+  
Sbjct: 158 --------LEKIRDLTMLSDIFPTGYHGAVT-AGVGPGSTVYIAGAGPVGLAAAASAQLL 208

Query: 217 GASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 272
           GA+ +I  D NP +  +A++FG  E ++ + +    +Q+ + + +   D + +C+G
Sbjct: 209 GAAVVIVGDLNPARLAQARSFGC-ETVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 67.1 bits (165), Expect = 8e-13
 Identities = 72/282 (25%), Positives = 103/282 (36%), Gaps = 89/282 (31%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQP--EEIRIKVVCTSLCRSDITAWETQAIFP------R 65
           KA V    G P V+E  EV  P P   E+ I+V    + R+D+     Q ++P       
Sbjct: 2   KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQR--QGLYPPPPGASD 59

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I G E +G+V +VGPGVT +  G+                         V  L       
Sbjct: 60  ILGLEVAGVVVAVGPGVTGWKVGD------------------------RVCAL------- 88

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS----AG 181
                             A   ++EY VV +G  + V              GLS    A 
Sbjct: 89  -----------------LAGGGYAEYVVVPAGQLLPVPE------------GLSLVEAAA 119

Query: 182 LGAAW--------NVADISKGSTVVIFGLGT--VGLSVAQGAKARGASRIIGVDTNPEKC 231
           L   +         +  +  G TV+I G G   VG +  Q AKA GA R+I    + EK 
Sbjct: 120 LPEVFFTAWQNLFQLGGLKAGETVLIHG-GASGVGTAAIQLAKALGA-RVIATAGSEEKL 177

Query: 232 EKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
           E  +A G    +N    +    + +K  T G G D   + +G
Sbjct: 178 EACRALGADVAINYRTED--FAEEVKEATGGRGVDVILDMVG 217

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 66.9 bits (164), Expect = 9e-13
 Identities = 61/240 (25%), Positives = 84/240 (35%), Gaps = 60/240 (25%)

Query: 16  AVAWGAGQPLVVEEVEVNPPQPE----EIRIKVVCTSLCRSDI------TAWETQAIFPR 65
            V    G P V+  +EV  P P     E+ +KV   S+   D               FP 
Sbjct: 1   VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I G + +G V +VG GVT F  G+ V                        L  +  G   
Sbjct: 61  IPGMDFAGEVVAVGSGVTRFKVGDEVFG---------------------RLPPKGGG--- 96

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
                                + +EY V   SG A K   ++  E   L   GL+A L A
Sbjct: 97  ---------------------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTA-LQA 134

Query: 185 AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
             +   +  G  V+I G  G VG    Q AKA GA  + GV  +    E  ++ G  E +
Sbjct: 135 LRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVC-STRNAELVRSLGADEVI 192

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 58/273 (21%), Positives = 95/273 (34%), Gaps = 65/273 (23%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPR----I 66
           +T K    +G    L + E     P+  ++ IKV    + R+D    + +   P     I
Sbjct: 5   VTLKG---FGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEI 61

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            G E +G VE VG  V  F EG+ V+ +  G                             
Sbjct: 62  LGLEVAGYVEDVGSDVKRFKEGDRVMALLPG----------------------------- 92

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
                                ++EY V H G  + +      E+    +  +      AW
Sbjct: 93  -------------------GGYAEYAVAHKGHVMHIPQGYTFEE----AAAIPEAFLTAW 129

Query: 187 N----VADISKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
                  D+ KG +V+I  G   VG + AQ A+  GA+ II   ++ EK +  K      
Sbjct: 130 QLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT-SSEEKVDFCKKLAAII 188

Query: 242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 274
            +   D      +V K   + G +   +C+G +
Sbjct: 189 LIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGS 221

Length = 334

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 66/269 (24%), Positives = 93/269 (34%), Gaps = 67/269 (24%)

Query: 14  KAAVAWGAGQPLVVEEVEVNP---PQPEEIRIKVVCTSLCRSDI---------------- 54
           +A +  G G    +   +  P   P P E+ I+V    +  +DI                
Sbjct: 2   RAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATD 61

Query: 55  -------TAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTC-RQCK 106
                    W     FPRI G +  G V +VG GV     GE VL           R   
Sbjct: 62  STGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVL------VDPSIRDPP 115

Query: 107 SDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 166
            D     + +G ER G                         F+EYTVV +  A  V+S  
Sbjct: 116 EDDPADIDYIGSERDG------------------------GFAEYTVVPAENAYPVNSPL 151

Query: 167 PLEKICLLSCGLSAGLGAAWNV---ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRII 222
              ++    C  S     A N+   A +  G TV++ G  G VG ++ Q AK RGA  +I
Sbjct: 152 SDVELATFPCSYS----TAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVI 206

Query: 223 GVDTNPEKCEKAKAFGVTEFLNPNDNNEP 251
            V     K E  +A G    +  +     
Sbjct: 207 AV-AGAAKEEAVRALGADTVILRDAPLLA 234

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 66/290 (22%), Positives = 98/290 (33%), Gaps = 82/290 (28%)

Query: 16  AVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI------FPRIFGH 69
           A+    G  L VE++    P P E  ++V+   +C +D+       I      FP + GH
Sbjct: 3   ALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDL------EIYKGYYPFPGVPGH 56

Query: 70  EASGIVESVGPG-------VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRG 122
           E  GIVE            V E N            C  C  C+          GL    
Sbjct: 57  EFVGIVEEGPEAELVGKRVVGEINIA----------CGRCEYCRR---------GLYT-- 95

Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG- 181
             H   +T   I  +         +F+EY               PLE + ++   +    
Sbjct: 96  --HCPNRTVLGIVDRD-------GAFAEYLT------------LPLENLHVVPDLVPDEQ 134

Query: 182 ------LGAAWNVAD---ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 232
                 L AA  + +   I+ G  V + G G +GL +AQ     G   ++ V  + EK  
Sbjct: 135 AVFAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLA 193

Query: 233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQ 282
            A+  GV   L     +E           GG D   E  G    +  AL+
Sbjct: 194 LARRLGVETVLPDEAESE----------GGGFDVVVEATGSPSGLELALR 233

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 20/219 (9%)

Query: 37  PEEIRIKVVCTSLCRSDITAWETQ---AIFPRIFGHEASGIVESVGPGVTEFNEGEHV-L 92
           PE++ IKV+   +C +D+   +     + +P + GHE  G V  VG  V++F  G+ V +
Sbjct: 34  PEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGV 93

Query: 93  TVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYT 152
            V +G C  C  CKSD    C      +R   ++D  T     GKP         F+   
Sbjct: 94  GVIVGCCGECSPCKSDLEQYC-----NKRIWSYNDVYT----DGKPTQ-----GGFASAM 139

Query: 153 VVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQ 211
           VV     VK+   +AP +   LL  G++       +      G    I GLG VG    +
Sbjct: 140 VVDQKFVVKIPEGMAPEQAAPLLCAGVTV-YSPLSHFGLKQSGLRGGILGLGGVGHMGVK 198

Query: 212 GAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 250
            AKA G    +   ++ ++ E  +  G  ++L  +D  E
Sbjct: 199 IAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAE 237

Length = 357

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 6   KQPQVITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ-- 60
           K P+    + A  W A  P   L            E++ +K++   +C SD+   + +  
Sbjct: 3   KSPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWG 62

Query: 61  -AIFPRIFGHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTC 113
              +P + GHE  GIV  +G  V +F EG+ V + V +G CK+C  C  D  N C
Sbjct: 63  FTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYC 117

Length = 360

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 71/273 (26%), Positives = 102/273 (37%), Gaps = 68/273 (24%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDI-----TAWETQAIFPRI 66
           KA V    G P V E  EV  PQP   ++ ++V  + +   D       A       P I
Sbjct: 2   KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPP-LPAI 60

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            G + +G+VE+VG GVT F  G+                        EV G         
Sbjct: 61  LGCDVAGVVEAVGEGVTRFRVGD------------------------EVYGCAG------ 90

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAGLGAA 185
                  + G          S +EY VV +   A+K ++++  E   L           A
Sbjct: 91  ------GLGGLQ-------GSLAEYAVVDARLLALKPANLSMREAAAL-----PLVGITA 132

Query: 186 WNV----ADISKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
           W      A +  G TV+I  G G VG    Q AKA GA R+    ++ EK   A++ G  
Sbjct: 133 WEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGAD 190

Query: 241 EFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
             +      E V + +   T G G D  F+ +G
Sbjct: 191 PIIYY---RETVVEYVAEHTGGRGFDVVFDTVG 220

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 65/284 (22%), Positives = 111/284 (39%), Gaps = 38/284 (13%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE------TQAIFP 64
           +  ++ V  G  + + V E E+         +++    +C SD+  ++           P
Sbjct: 3   VKTQSCVVAGK-KDVAVTEQEIEW-NNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAP 60

Query: 65  RIFGHEASG-IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV 123
            + GHE  G IV S   G+    EG+ V       C  C+ C S   N C          
Sbjct: 61  MVLGHEVIGKIVHSDSSGL---KEGQTVAINPSKPCGHCKYCLSHNENQCT--------- 108

Query: 124 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 183
                  RF   G  +Y       F+ Y VV +   +     A  EK+   +  L+  + 
Sbjct: 109 -----TMRFF--GSAMYFPHVDGGFTRYKVVDTAQCIPYPEKAD-EKVMAFAEPLAVAIH 160

Query: 184 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
           AA    D+ +G  V + G+G +G  +    K  GA+ I+  D +P     A+  G  + +
Sbjct: 161 AAHQAGDL-QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV 219

Query: 244 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV 287
           NP +++    +  K    G  D SFE  G      +++ +C +V
Sbjct: 220 NPQNDDLDHYKAEK----GYFDVSFEVSGH----PSSINTCLEV 255

Length = 343

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 68/251 (27%), Positives = 99/251 (39%), Gaps = 59/251 (23%)

Query: 27  VEEVEVNPPQPEEIRIKVVCTSLCRSDI--TA--WETQAIFPRIFGHEASGIVESVGPGV 82
           + +V V  P P E+ +K     +  SDI  TA  ++     P   G E  G V +VG GV
Sbjct: 20  IVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGV 79

Query: 83  TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHY 142
           T+F  G+ V T+  G                                             
Sbjct: 80  TDFKVGDAVATMSFG--------------------------------------------- 94

Query: 143 CAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTV-VIFG 201
               +F+EY VV +  AV V  + P E + LL  GL+A + A   V ++  G TV V   
Sbjct: 95  ----AFAEYQVVPARHAVPVPELKP-EVLPLLVSGLTASI-ALEEVGEMKSGETVLVTAA 148

Query: 202 LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD 261
            G  G    Q AK  G   +IG  ++ EK E  K+ G    +N     E + +V+K+   
Sbjct: 149 AGGTGQFAVQLAKLAG-CHVIGTCSSDEKAEFLKSLGCDRPINY--KTEDLGEVLKKEYP 205

Query: 262 GGADYSFECIG 272
            G D  +E +G
Sbjct: 206 KGVDVVYESVG 216

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 56/241 (23%)

Query: 31  EVNPPQPEEIRIKVVCTSLCRSDITA----WETQAIFPRIFGHEASGIVESVGPGVTEFN 86
           EV PP P E+RI+V   SL   D+      + T   +P   G EASG+V +VGP VT   
Sbjct: 1   EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60

Query: 87  EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVS 146
            G+ V+    GE                               T  ++    V    A  
Sbjct: 61  VGDEVI-AGTGE-------------------------SMGGHATLVTVPEDQVVRKPASL 94

Query: 147 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVI-FGLGTV 205
           SF E       CA+ V  +  ++               A+  A ++KG  ++I    G  
Sbjct: 95  SFEE------ACALPVVFLTVID---------------AFARAGLAKGEHILIQTATGGT 133

Query: 206 GLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GA 264
           GL   Q A+ +GA  I    ++ +K E  K  GV   +N  + +   ++ I R+T G G 
Sbjct: 134 GLMAVQLARLKGAE-IYATASSDDKLEYLKQLGVPHVINYVEED--FEEEIMRLTGGRGV 190

Query: 265 D 265
           D
Sbjct: 191 D 191

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 60/237 (25%), Positives = 90/237 (37%), Gaps = 53/237 (22%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---TQAIFPRIFG 68
           KA V    G P  L + E+ +  P+P  + I+V    L RS+I   +       FPR+ G
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61

Query: 69  HEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 128
            EA G VE   PG   F  G+ V T  +G                  +G    G      
Sbjct: 62  IEAVGEVEE-APG-GTFTPGQRVAT-AMGG-----------------MGRTFDG------ 95

Query: 129 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 188
                             S++EYT+V +     + S     ++  L        G+ +  
Sbjct: 96  ------------------SYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRS 137

Query: 189 ADISKGSTVVIFGLGT--VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
             +  G T++I G GT  VGL+  + AKA GA  +     +PE+    K  G  E +
Sbjct: 138 LGLQPGDTLLIRG-GTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVV 192

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 55.4 bits (133), Expect = 9e-09
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 39  EIRIKVVCTSLCRSDITAWETQ---AIFPRIFGHEASGIVESVGPGVTEFNEGEHV-LTV 94
           ++ +K++   +C SD+   +     + +P I GHE  GI   VG  VT+F EG+ V + V
Sbjct: 33  DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGV 92

Query: 95  FIGECKTCRQCKSDKSNTC 113
            IG C++C  C  D  N C
Sbjct: 93  IIGSCQSCESCNQDLENYC 111

Length = 375

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 56/270 (20%), Positives = 89/270 (32%), Gaps = 77/270 (28%)

Query: 14  KAAV--AWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT----AWETQAIFPRIF 67
           +A     +GA   L + ++ V  P P E+ ++V  + +   D      A+      P + 
Sbjct: 2   RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVP 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           G + +G+VE+VG GV     G+ V                          L         
Sbjct: 62  GSDGAGVVEAVGEGVDGLKVGDRVWLT----------------------NLGWGRRQ--- 96

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
                              + +EY VV            P +++  L  G+S   GAA  
Sbjct: 97  ------------------GTAAEYVVV------------PADQLVPLPDGVSFEQGAALG 126

Query: 188 V------------ADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 234
           +            A    G TV++ G  G VG +  Q A+  GA R+I   ++ E  E  
Sbjct: 127 IPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELV 185

Query: 235 KAFGVTEFLNPNDNNEPVQQVIKRITDGGA 264
           +  G     N     E +   I   T G  
Sbjct: 186 RQAGADAVFNYRA--EDLADRILAATAGQG 213

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 69/287 (24%), Positives = 108/287 (37%), Gaps = 55/287 (19%)

Query: 16  AVAWGAGQP-LVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQAIFPR-----IF 67
           A+A   G+P + V ++    P P E+ ++ +   +C +D  I A E     P      + 
Sbjct: 3   AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEY-GTAPPGEDFLVL 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           GHEA G+VE VG G +  + G+ V+         C  C+  + + CE           + 
Sbjct: 62  GHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCE-----------TG 109

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
           + T   IKG   +         EY V      VKV     L  + +L   LS  +  A  
Sbjct: 110 EYTERGIKGLHGF-------MREYFVDDPEYLVKVP--PSLADVGVLLEPLSV-VEKAIE 159

Query: 188 VAD-ISK------GSTVVIFGLGTVGLSVAQGAKARG-----ASRIIGVDTNPEKCEKAK 235
            A+ + K          ++ G G +GL  A   + RG      +R    D    K +  +
Sbjct: 160 QAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR---RDPPDPKADIVE 216

Query: 236 AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQ 282
             G T     N +  PV +V      G  D   E    TG+   A +
Sbjct: 217 ELGATYV---NSSKTPVAEVKL---VGEFDLIIEA---TGVPPLAFE 254

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 55/259 (21%), Positives = 90/259 (34%), Gaps = 64/259 (24%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITA----WETQAIFPRIFGHEASGIVESVGP 80
           L V E ++  P   E+ +KV  + +  +D+      +  Q   P   G++  G V+++G 
Sbjct: 15  LKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGS 74

Query: 81  GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY 140
           GVT F  G+                         V  L R G                  
Sbjct: 75  GVTGFEVGD------------------------RVAALTRVG------------------ 92

Query: 141 HYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVI 199
                   +EY  + +   V V   +   E +CL+   ++A        A +  G  V+I
Sbjct: 93  ------GNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTA-YQMLHRAAKVLTGQRVLI 145

Query: 200 FGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIK 257
            G  G VG ++ + A   GA  + G  T  E+   A +  G T       +  P      
Sbjct: 146 HGASGGVGQALLELALLAGA-EVYG--TASERNHAALRELGATPIDYRTKDWLPA----- 197

Query: 258 RITDGGADYSFECIGDTGM 276
            +T GG D  F+ +G    
Sbjct: 198 MLTPGGVDVVFDGVGGESY 216

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 17/88 (19%)

Query: 18 AWGAGQPLVVE--------EVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQAIF 63
          A G  QPL +         E+    P   ++ ++V   S+       R+       Q   
Sbjct: 3  AIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQ--- 59

Query: 64 PRIFGHEASGIVESVGPGVTEFNEGEHV 91
          P+I G +ASG+VE+VG  VT F  G+ V
Sbjct: 60 PKILGWDASGVVEAVGSEVTLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 68/282 (24%), Positives = 98/282 (34%), Gaps = 89/282 (31%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWETQAIFP------R 65
           KA      G P V+  VEV  P P+  E+ I+V    + R D+   +    +P       
Sbjct: 2   KAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLL--QRAGKYPPPPGASD 59

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I G E +G V +VG GV+ +  G+                         V  L       
Sbjct: 60  ILGLEVAGEVVAVGEGVSRWKVGD------------------------RVCAL------- 88

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
                             A   ++EY  V +G  + V              GLS    AA
Sbjct: 89  -----------------VAGGGYAEYVAVPAGQVLPVPE------------GLSLVEAAA 119

Query: 186 --------W-NVADI---SKGSTVVIFGLGTVGLSVA--QGAKARGASRIIGVDTNPEKC 231
                   W N+        G TV+I G G  G+     Q AKA GA R+     + EKC
Sbjct: 120 LPETFFTVWSNLFQRGGLKAGETVLIHG-GASGIGTTAIQLAKAFGA-RVFTTAGSDEKC 177

Query: 232 EKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
              +A G    +N  + +    +V+K  T G G D   + +G
Sbjct: 178 AACEALGADIAINYREEDFV--EVVKAETGGKGVDVILDIVG 217

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 50/190 (26%), Positives = 75/190 (39%), Gaps = 30/190 (15%)

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVL---TVFIGECKTCRQCKSDKSNTCEVLGLERRG 122
           I G +ASG+V  VGPGVT +  G+ V+             R      S+   + G E   
Sbjct: 80  IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRDGDPMLSSEQRIWGYE--- 136

Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSA- 180
                  T F              SF+E+ +V       K   +   E  C    G +A 
Sbjct: 137 -------TNFG-------------SFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAY 176

Query: 181 GLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
                WN A +  G  V+I+G  G +G    Q A+A G + +  V ++PEK E  ++ G 
Sbjct: 177 RQLVGWNPAAVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV-AVVSSPEKAEYCRSLGA 235

Query: 240 TEFLNPNDNN 249
              ++ ND  
Sbjct: 236 EAVIDRNDFG 245

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 48/199 (24%), Positives = 75/199 (37%), Gaps = 26/199 (13%)

Query: 24  PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGP 80
           PL   E  V  P P E+ ++V    +CR+D+   E      R     GHE  G V   G 
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGA 73

Query: 81  GVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPV 139
               F  G+ V   ++   C  CR C+    N C                +R++      
Sbjct: 74  DAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCP--------------ASRYT------ 113

Query: 140 YHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVI 199
             +     ++EYT V +  A ++ +     ++  L C    G  A    A +  G  + +
Sbjct: 114 -GWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLR-ASLPPGGRLGL 171

Query: 200 FGLGTVGLSVAQGAKARGA 218
           +G G      AQ A A+GA
Sbjct: 172 YGFGGSAHLTAQVALAQGA 190

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 16/87 (18%)

Query: 20 GAGQPLVVEEVEV--NPPQPEEIRIKVVCTSLCRSDITAWETQAI---------FPRIFG 68
          G   PLV+E V +   PP P E+ ++++   +  SD+       I          P + G
Sbjct: 7  GEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLIT-----ISGAYGSRPPLPAVPG 61

Query: 69 HEASGIVESVGPGVTEFNEGEHVLTVF 95
          +E  G+V  VG GV+    G+ VL + 
Sbjct: 62 NEGVGVVVEVGSGVSGLLVGQRVLPLG 88

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 197 VVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 239
           VV+ GLG +G S A+  + RG A  ++ VD   +  E A + GV
Sbjct: 6   VVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGV 49

Length = 735

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 40/194 (20%), Positives = 60/194 (30%), Gaps = 75/194 (38%)

Query: 39  EIRIKVVCTSLCRSDI-TAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIG 97
           E+ ++V    L   D+  A           G E SGIV  VG GVT    G+ V+ +  G
Sbjct: 2   EVEVEVKAAGLNFRDVLVALGLLPGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAPG 61

Query: 98  ECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 157
                                                            +F+ +  V + 
Sbjct: 62  -------------------------------------------------AFATHVRVDAR 72

Query: 158 CAVKVSSIAPLEKICLLSCGLS----AGLGAAW--------NVADISKGSTVVIF-GLGT 204
             VK+               LS    A L  A+        ++A + KG +V+I    G 
Sbjct: 73  LVVKIPD------------SLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGG 120

Query: 205 VGLSVAQGAKARGA 218
           VG +  Q A+  GA
Sbjct: 121 VGQAAIQLAQHLGA 134

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 14 KAAVAWGAGQPL-VVEEVEVNPPQPE--EIRIKVVCTSLCRSDI----TAWETQAIFPRI 66
          +AAV    G P  V+E  EV  P P   E+ ++   + +   D+      +  +   P I
Sbjct: 2  RAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAI 61

Query: 67 FGHEASGIVESVGPGVTEFNEGEHV 91
           G EA G+V++VG GV     G+ V
Sbjct: 62 GGSEAVGVVDAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 42/246 (17%)

Query: 22  GQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFP-------------R 65
           G P   + +E+V V    P E+ + V+   +  +++ A   + +                
Sbjct: 24  GDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYH 83

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I G +ASGIV +VG GV  +  G+ V+            C     N  E  G      M 
Sbjct: 84  IGGSDASGIVWAVGEGVKNWKVGDEVVV----------HCSVWDGNDPERAG---GDPMF 130

Query: 126 SDQQTRFSIKGKPVYHY-CAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSA-GL 182
              Q         ++ Y     SF+++ +V +     K   ++  E    +  G +A  +
Sbjct: 131 DPSQR--------IWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRM 182

Query: 183 GAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
              WN   +  G  V+I+G  G +G    Q A+A GA   + V ++ EK E  +A G   
Sbjct: 183 LFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYCRALGAEG 241

Query: 242 FLNPND 247
            +N  D
Sbjct: 242 VINRRD 247

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 11/135 (8%)

Query: 144 AVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISK---GSTVVI 199
            VS + EY +       K+  S APL    L   G+  GL A + + DI +   G TVV+
Sbjct: 99  GVSGWQEYAISDGEGLRKLDPSPAPLSAY-LGVLGMP-GLTAYFGLLDIGQPKAGETVVV 156

Query: 200 FGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVTEFLNPNDNNEPVQQVIK 257
               G VG  V Q AK +G  R++G+    EKC+      G    ++    +    Q +K
Sbjct: 157 SAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKAED--FAQALK 213

Query: 258 RITDGGADYSFECIG 272
                G D  FE +G
Sbjct: 214 EACPKGIDVYFENVG 228

Length = 340

>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 238
           +++ G G VG  VA      G   +   D + EKC +     
Sbjct: 4   ILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI 45

Length = 389

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITA----WETQAIFPRIF 67
          +A V  G G    L VE+  +  P   E+R++V    L  +D+ A    +++    P + 
Sbjct: 1  RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVP 60

Query: 68 GHEASGIVESVGPGVTEFNEGEHVLTV 94
          G E +G VE+VG GV +F  G+ V+ +
Sbjct: 61 GFECAGTVEAVGEGVKDFKVGDRVMGL 87

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 48/256 (18%), Positives = 86/256 (33%), Gaps = 67/256 (26%)

Query: 36  QPEEIRIKVVCTSLCRSDITAWE--TQAIF--PRIFGHEASGIVESVGPGV-TEFNEGEH 90
           +  EI +KV   +L   D+  +   T       +  G + SG++  VG  V +E+  G+ 
Sbjct: 27  KDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEWKVGD- 85

Query: 91  VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYH-YCAVSSFS 149
                                  EV G+                      H Y    + S
Sbjct: 86  -----------------------EVCGI--------------------YPHPYGGQGTLS 102

Query: 150 EYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG----LGAAWNVAD-----ISKGSTVVIF 200
           +Y +V      K    +   K   +S   +A     LG A+ + +     +   S V++ 
Sbjct: 103 QYLLVDP----KKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVL 158

Query: 201 GLGT-VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN--PNDNNEPVQQVIK 257
           G  T VG    Q AK       +    +    E  K  G   F++   +   + ++ V++
Sbjct: 159 GGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNKKLGADHFIDYDAHSGVKLLKPVLE 218

Query: 258 RITDGGA-DYSFECIG 272
            +   G  D   +C+G
Sbjct: 219 NVKGQGKFDLILDCVG 234

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 23/143 (16%)

Query: 143 CAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-------AW----NVADI 191
                + EY VV        S +  L+    L   LSA LG        A+     +   
Sbjct: 91  SGFLGWQEYAVVDGA-----SGLRKLDPSLGLP--LSAYLGVLGMTGLTAYFGLTEIGKP 143

Query: 192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNN 249
             G TVV+    G VG  V Q AK  GA R++G+  + EKC       G    +N     
Sbjct: 144 KPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT-- 200

Query: 250 EPVQQVIKRITDGGADYSFECIG 272
             + + +K     G D  F+ +G
Sbjct: 201 PDLAEALKEAAPDGIDVYFDNVG 223

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
           ++I G G VG S+A+  +  G   ++ +D +PE+ E+ +  GV 
Sbjct: 1   IIIIGYGRVGRSLAEELREGG-PDVVVIDKDPERVEELREEGVP 43

This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Length = 116

>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism]

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 196 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ 253
            V I GLG +G S+A+  K  G   RIIG D +    + A   GV + L      E   
Sbjct: 5   KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA 63

Length = 279

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 232
            G TV+I GLG +G  +A+ AKA G  R+IGV  +     
Sbjct: 133 AGKTVLIVGLGDIGREIARRAKAFGM-RVIGVRRSGRPAP 171

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
            G TV +FGLG  GL+ A+   A GA  +I  D NP    KA A G+T
Sbjct: 8   AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASRAKAAAAGIT 54

Length = 460

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 25 LVVEEVEVNPPQ-PEEIRIKVVCTSLCRSDI--------TAWETQAIFPRIFGHEASGIV 75
          L +E  E+ PP  P E+ +K++   +  +DI            T    P + G+E  G V
Sbjct: 16 LQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEV 75

Query: 76 ESVGPGVTEFNEGEHVL 92
            VG GV     G+ V+
Sbjct: 76 VKVGSGVKSLKPGDWVI 92

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
           G TV I GLG +G +VA+  KA G  ++I  D  P+   +A+A G  
Sbjct: 35  GKTVGIIGLGRIGRAVARRLKAFGM-KVIAYDRYPK--AEAEALGAR 78

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 38.9 bits (92), Expect = 0.001
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 64 PRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIG 97
            + G E +G+V  VGPGVT    G+ V+ +  G
Sbjct: 23 EAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAPG 56

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
            ++I G G VG SVA+     G + ++ +D + E+ E+  A
Sbjct: 2   KIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEERVEEFLA 41

Length = 225

>gnl|CDD|235824 PRK06545, PRK06545, prephenate dehydrogenase; Validated

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 196 TVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGVTE 241
           TV+I GLG +G S+A   KA G    IIG D +  +  +A  FGV +
Sbjct: 2   TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVID 48

Length = 359

>gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 197 VVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 239
           + I GLG +G S+    K +G  S++ G D N    +KA   G+
Sbjct: 3   IGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL 46

Length = 275

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 188 VADISKGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
              +  G  V+       VG  + Q AK  G  + I V    E+ E+ KA G  E +  +
Sbjct: 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVI--D 189

Query: 247 DNNEPVQQVIKRITDG-GADYSFECIG--DTGMITTALQ 282
            + E + Q +K  T G GA  + + +G      +  +L+
Sbjct: 190 SSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLR 228

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVT 240
           +G TV + GLG VG  +A+     GA ++I  D N E   +A   FG T
Sbjct: 27  EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT 74

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 200

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 18 AWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ-----------AIFPRI 66
           +G  + LV E+V    P P ++RI V       + +   +TQ              P +
Sbjct: 8  EFGPPEVLVPEDVPDPVPGPGQVRIAVAA-----AGVHFVDTQLRSGWGPGPFPPELPYV 62

Query: 67 FGHEASGIVESVGPGV 82
           G E +G+V++VGPGV
Sbjct: 63 PGGEVAGVVDAVGPGV 78

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
             + + GLG VGL +A      G   + GVD + EK +K   
Sbjct: 1   MKIAVIGLGYVGLPLAALLADLGHD-VTGVDIDQEKVDKLNK 41

Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	99.98
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.98
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.97
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.97
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.97
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.97
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.97
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.97
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.97
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.97
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.97
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.97
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.97
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.97
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.97
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.97
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.96
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.96
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.96
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.96
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.96
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.95
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.95
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.95
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.95
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.95
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.94
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.94
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.89
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.88
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.87
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.82
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.47
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.01
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.63
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.39
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.23
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.14
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.12
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.04
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.98
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.96
PLN02494	477	adenosylhomocysteinase	97.95
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.93
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.86
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.77
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.67
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.62
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.62
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.45
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.44
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.4
PRK08324	681	short chain dehydrogenase; Validated	97.37
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.35
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.34
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.33
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.27
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.23
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.21
TIGR00438	188	rrmJ cell division protein FtsJ.	96.96
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.95
PRK05993	277	short chain dehydrogenase; Provisional	96.93
PRK04148	134	hypothetical protein; Provisional	96.9
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	96.9
PRK06182	273	short chain dehydrogenase; Validated	96.89
PRK05693	274	short chain dehydrogenase; Provisional	96.82
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.79
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.76
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.75
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.75
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.75
PRK08177	225	short chain dehydrogenase; Provisional	96.72
PRK08017	256	oxidoreductase; Provisional	96.7
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.68
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.66
PRK06139	330	short chain dehydrogenase; Provisional	96.65
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.64
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.63
PRK07060	245	short chain dehydrogenase; Provisional	96.63
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.62
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.48
PRK06057	255	short chain dehydrogenase; Provisional	96.47
PRK12742	237	oxidoreductase; Provisional	96.45
COG4122	219	Predicted O-methyltransferase [General function pr	96.44
PRK14967	223	putative methyltransferase; Provisional	96.43
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.38
PLN02780	320	ketoreductase/ oxidoreductase	96.31
PRK06949	258	short chain dehydrogenase; Provisional	96.3
PRK06953	222	short chain dehydrogenase; Provisional	96.29
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.28
PRK12828	239	short chain dehydrogenase; Provisional	96.26
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.26
PRK05872	296	short chain dehydrogenase; Provisional	96.22
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.22
PRK07831	262	short chain dehydrogenase; Provisional	96.2
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.19
PRK07814	263	short chain dehydrogenase; Provisional	96.17
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.17
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.16
PRK07326	237	short chain dehydrogenase; Provisional	96.15
PRK12829	264	short chain dehydrogenase; Provisional	96.14
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.14
PLN02476	278	O-methyltransferase	96.11
PRK06841	255	short chain dehydrogenase; Provisional	96.09
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.04
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	96.04
PRK06180	277	short chain dehydrogenase; Provisional	96.04
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.03
PRK07402	196	precorrin-6B methylase; Provisional	96.03
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.0
PRK09291	257	short chain dehydrogenase; Provisional	95.97
PLN03209	576	translocon at the inner envelope of chloroplast su	95.97
PLN02366	308	spermidine synthase	95.96
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.96
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.95
PRK05866	293	short chain dehydrogenase; Provisional	95.94
PRK08339	263	short chain dehydrogenase; Provisional	95.92
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.91
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.9
PRK07825	273	short chain dehydrogenase; Provisional	95.88
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	95.88
PRK07806	248	short chain dehydrogenase; Provisional	95.87
PRK05867	253	short chain dehydrogenase; Provisional	95.87
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.86
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	95.86
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	95.83
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	95.82
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	95.82
PRK06196	315	oxidoreductase; Provisional	95.81
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	95.8
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.8
PRK11207	197	tellurite resistance protein TehB; Provisional	95.79
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.75
PRK12939	250	short chain dehydrogenase; Provisional	95.74
PRK06500	249	short chain dehydrogenase; Provisional	95.73
PRK07062	265	short chain dehydrogenase; Provisional	95.72
PRK07024	257	short chain dehydrogenase; Provisional	95.72
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.71
PRK09072	263	short chain dehydrogenase; Provisional	95.71
PRK08267	260	short chain dehydrogenase; Provisional	95.7
PRK07677	252	short chain dehydrogenase; Provisional	95.7
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.7
PRK08317	241	hypothetical protein; Provisional	95.69
PRK07774	250	short chain dehydrogenase; Provisional	95.69
PRK08703	239	short chain dehydrogenase; Provisional	95.68
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.67
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.66
PRK08265	261	short chain dehydrogenase; Provisional	95.63
PRK07454	241	short chain dehydrogenase; Provisional	95.63
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.63
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.63
PRK08628	258	short chain dehydrogenase; Provisional	95.62
PRK07478	254	short chain dehydrogenase; Provisional	95.61
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.59
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.58
PRK07890	258	short chain dehydrogenase; Provisional	95.58
PRK07109	334	short chain dehydrogenase; Provisional	95.57
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.55
PRK06483	236	dihydromonapterin reductase; Provisional	95.54
PRK08862	227	short chain dehydrogenase; Provisional	95.54
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.53
PRK07904	253	short chain dehydrogenase; Provisional	95.53
PRK06194	287	hypothetical protein; Provisional	95.52
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.51
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.5
PLN02589	247	caffeoyl-CoA O-methyltransferase	95.49
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.49
PRK05884	223	short chain dehydrogenase; Provisional	95.48
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	95.48
PRK06179	270	short chain dehydrogenase; Provisional	95.47
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.47
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.46
PRK06172	253	short chain dehydrogenase; Provisional	95.45
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.45
PRK06198	260	short chain dehydrogenase; Provisional	95.45
PRK05854	313	short chain dehydrogenase; Provisional	95.44
PRK06125	259	short chain dehydrogenase; Provisional	95.42
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.41
PLN03075	296	nicotianamine synthase; Provisional	95.41
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.41
PRK07063	260	short chain dehydrogenase; Provisional	95.4
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.4
PRK08589	272	short chain dehydrogenase; Validated	95.4
PRK07576	264	short chain dehydrogenase; Provisional	95.4
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.39
PRK00811	283	spermidine synthase; Provisional	95.38
KOG0725	270	consensus Reductases with broad range of substrate	95.38
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.38
PRK06138	252	short chain dehydrogenase; Provisional	95.38
PRK08643	256	acetoin reductase; Validated	95.37
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.36
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.35
PRK06482	276	short chain dehydrogenase; Provisional	95.35
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.34
PRK05876	275	short chain dehydrogenase; Provisional	95.33
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.29
PRK07832	272	short chain dehydrogenase; Provisional	95.29
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.28
PRK05717	255	oxidoreductase; Validated	95.28
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.28
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.26
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.23
PRK07856	252	short chain dehydrogenase; Provisional	95.22
PRK06181	263	short chain dehydrogenase; Provisional	95.21
PRK12367	245	short chain dehydrogenase; Provisional	95.2
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.2
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.18
PRK07074	257	short chain dehydrogenase; Provisional	95.17
PRK07035	252	short chain dehydrogenase; Provisional	95.17
PRK06101	240	short chain dehydrogenase; Provisional	95.17
PRK01581	374	speE spermidine synthase; Validated	95.16
PRK08264	238	short chain dehydrogenase; Validated	95.15
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.14
PRK08226	263	short chain dehydrogenase; Provisional	95.14
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.12
PRK08251	248	short chain dehydrogenase; Provisional	95.1
PRK07067	257	sorbitol dehydrogenase; Provisional	95.1
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	95.1
PRK06914	280	short chain dehydrogenase; Provisional	95.08
PRK09186	256	flagellin modification protein A; Provisional	95.08
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.07
PLN02253	280	xanthoxin dehydrogenase	95.07
PRK06197	306	short chain dehydrogenase; Provisional	95.06
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.06
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.04
PRK06114	254	short chain dehydrogenase; Provisional	95.03
PLN00203	519	glutamyl-tRNA reductase	95.03
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.02
PLN02244	340	tocopherol O-methyltransferase	95.02
PRK10669	558	putative cation:proton antiport protein; Provision	95.02
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.02
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.0
PRK09242	257	tropinone reductase; Provisional	95.0
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.0
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.0
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.0
PRK06849	389	hypothetical protein; Provisional	95.0
PRK05875	276	short chain dehydrogenase; Provisional	94.98
PRK04266	226	fibrillarin; Provisional	94.97
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	94.96
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	94.94
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	94.92
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	94.91
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	94.9
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	94.9
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	94.88
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.86
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.85
PRK10538	248	malonic semialdehyde reductase; Provisional	94.83
PRK06720	169	hypothetical protein; Provisional	94.8
CHL00194	317	ycf39 Ycf39; Provisional	94.77
PRK06398	258	aldose dehydrogenase; Validated	94.75
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	94.74
PRK07102	243	short chain dehydrogenase; Provisional	94.74
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	94.74
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.73
PRK07577	234	short chain dehydrogenase; Provisional	94.72
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	94.72
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.71
PRK04457	262	spermidine synthase; Provisional	94.71
PRK07791	286	short chain dehydrogenase; Provisional	94.71
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.7
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.7
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.7
PRK13255	218	thiopurine S-methyltransferase; Reviewed	94.7
PRK08085	254	gluconate 5-dehydrogenase; Provisional	94.69
PRK06484	520	short chain dehydrogenase; Validated	94.68
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	94.66
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.65
PRK08328	231	hypothetical protein; Provisional	94.64
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	94.63
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	94.61
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	94.58
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.58
PRK06484	520	short chain dehydrogenase; Validated	94.56
PRK08263	275	short chain dehydrogenase; Provisional	94.55
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.55
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.55
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.53
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	94.52
PRK06940	275	short chain dehydrogenase; Provisional	94.5
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.49
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.49
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.48
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.48
PRK08303	305	short chain dehydrogenase; Provisional	94.43
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.43
PRK00536	262	speE spermidine synthase; Provisional	94.42
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	94.42
PRK14903	431	16S rRNA methyltransferase B; Provisional	94.41
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.41
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.4
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.39
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.37
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.34
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.33
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	94.31
PRK10258	251	biotin biosynthesis protein BioC; Provisional	94.3
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.29
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.29
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	94.29
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.26
PRK08278	273	short chain dehydrogenase; Provisional	94.25
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	94.25
PRK07097	265	gluconate 5-dehydrogenase; Provisional	94.24
PRK12938	246	acetyacetyl-CoA reductase; Provisional	94.22
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.22
PRK06523	260	short chain dehydrogenase; Provisional	94.21
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.2
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.19
PRK08618	325	ornithine cyclodeaminase; Validated	94.18
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	94.17
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.15
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.14
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.11
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.11
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	94.09
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	94.09
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.08
PRK05650	270	short chain dehydrogenase; Provisional	94.08
PRK07574	385	formate dehydrogenase; Provisional	94.08
PRK12743	256	oxidoreductase; Provisional	94.0
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	93.99
PLN02233	261	ubiquinone biosynthesis methyltransferase	93.99
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.98
PRK06128	300	oxidoreductase; Provisional	93.97
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	93.94
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	93.91
PRK08219	227	short chain dehydrogenase; Provisional	93.86
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	93.86
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	93.86
PRK08223	287	hypothetical protein; Validated	93.86
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	93.85
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.84
PLN03139	386	formate dehydrogenase; Provisional	93.83
PLN02823	336	spermine synthase	93.83
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.81
PRK07775	274	short chain dehydrogenase; Provisional	93.78
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	93.77
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	93.75
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	93.75
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	93.75
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	93.73
PRK09496	453	trkA potassium transporter peripheral membrane com	93.73
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	93.72
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	93.72
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	93.63
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	93.59
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	93.56
PRK12937	245	short chain dehydrogenase; Provisional	93.53
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	93.52
TIGR00452	314	methyltransferase, putative. Known examples to dat	93.52
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	93.51
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.5
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	93.5
PRK12335	287	tellurite resistance protein TehB; Provisional	93.49
TIGR02415	254	23BDH acetoin reductases. One member of this famil	93.48
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	93.47
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.46
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	93.46
PRK09496	453	trkA potassium transporter peripheral membrane com	93.43
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	93.42
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	93.39
PRK09135	249	pteridine reductase; Provisional	93.38
PRK07417	279	arogenate dehydrogenase; Reviewed	93.38
PRK05855	582	short chain dehydrogenase; Validated	93.35
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.35
PRK06701	290	short chain dehydrogenase; Provisional	93.34
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.31
PLN02336	475	phosphoethanolamine N-methyltransferase	93.3
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	93.26
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.25
PRK14902	444	16S rRNA methyltransferase B; Provisional	93.22
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	93.21
PRK13984	604	putative oxidoreductase; Provisional	93.18
PRK13403	335	ketol-acid reductoisomerase; Provisional	93.15
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	93.14
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	93.1
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	93.09
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.05
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.04
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	93.04
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	93.01
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.0
PLN02490	340	MPBQ/MSBQ methyltransferase	93.0
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	92.92
PRK08936	261	glucose-1-dehydrogenase; Provisional	92.88
PRK13243	333	glyoxylate reductase; Reviewed	92.8
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	92.8
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	92.8
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	92.78
PRK03612	521	spermidine synthase; Provisional	92.77
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.77
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	92.77
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	92.72
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	92.69
PLN02256	304	arogenate dehydrogenase	92.69
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.69
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	92.68
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	92.67
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.66
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	92.65
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.64
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	92.64
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.62

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.9e-53  Score=362.11  Aligned_cols=280  Identities=56%  Similarity=1.017  Sum_probs=268.5

Q ss_pred             CcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCC
Q 022819            8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      ....++||.+++++++||.++|+.+++|+.+||+||++++++|.+|...|.|..   .+|.++|||++|+|+.+|..|.+
T Consensus         3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~   82 (375)
T KOG0022|consen    3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT   82 (375)
T ss_pred             CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence            356899999999999999999999999999999999999999999999999885   78999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      +++||+|+......|+.|.+|++++.|.|.....+ ..+.+.+||..|+.+||..+|||.+..+|+||.+++...+++|+
T Consensus        83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId  162 (375)
T KOG0022|consen   83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKID  162 (375)
T ss_pred             cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecC
Confidence            99999999999999999999999999999988876 47788789999999999999999999999999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      +..+++.++++.|.++|+|.++++.+++++|+++.|+|.|++|+++++-||+.|+.+||++|.+++|.++++++|++.++
T Consensus       163 ~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~i  242 (375)
T KOG0022|consen  163 PSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFI  242 (375)
T ss_pred             CCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC
Q 022819          244 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~  287 (291)
                      |..+......+.+.+.|++++|..|||+|..+.+.+++..+.+|
T Consensus       243 Np~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~G  286 (375)
T KOG0022|consen  243 NPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKG  286 (375)
T ss_pred             ChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcC
Confidence            99865567899999999999999999999999999999999887

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=9.1e-53  Score=374.35  Aligned_cols=250  Identities=32%  Similarity=0.485  Sum_probs=233.7

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      ++|||+++.++++|+++++++.|+|+++||+|+|+++|+|.+|++.++|..   .+|+++|||.+|+|+++|++|++|++
T Consensus         2 ~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k~   81 (339)
T COG1064           2 MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLKV   81 (339)
T ss_pred             cceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCCC
Confidence            679999999999999999999999999999999999999999999999988   68999999999999999999999999


Q ss_pred             CCEEEe-ecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           88 GEHVLT-VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        88 GdrV~~-~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      ||||.+ +...+|+.|.+|+++++++|+....  .|+. .+|                  +|+||++++++++++||+++
T Consensus        82 GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~--~gy~-~~G------------------Gyaeyv~v~~~~~~~iP~~~  140 (339)
T COG1064          82 GDRVGVGWLVISCGECEYCRSGNENLCPNQKI--TGYT-TDG------------------GYAEYVVVPARYVVKIPEGL  140 (339)
T ss_pred             CCEEEecCccCCCCCCccccCcccccCCCccc--ccee-ecC------------------cceeEEEEchHHeEECCCCC
Confidence            999988 8899999999999999999999766  4544 444                  99999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++||.+.|+..|.|+++ +..+++++++|+|.|.|++|++++|+|+++|+ +|++++++++|++.++++|++++++.+
T Consensus       141 d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~  218 (339)
T COG1064         141 DLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSS  218 (339)
T ss_pred             ChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcC
Confidence            9999999999999999986 45999999999999999999999999999998 999999999999999999999999976


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .+..+.+++.    +|+++|+++ +..++.+++.|+++|++
T Consensus       219 ~--~~~~~~~~~~----~d~ii~tv~-~~~~~~~l~~l~~~G~~  255 (339)
T COG1064         219 D--SDALEAVKEI----ADAIIDTVG-PATLEPSLKALRRGGTL  255 (339)
T ss_pred             C--chhhHHhHhh----CcEEEECCC-hhhHHHHHHHHhcCCEE
Confidence            4  6666666663    999999999 89999999999999986

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=1.8e-52  Score=365.85  Aligned_cols=277  Identities=47%  Similarity=0.844  Sum_probs=264.5

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |+++|.+++++++||+++|+.+++|++|||+||+.++|+|.+|...++|..  .+|.++|||++|+|++||+.|+.++||
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~~P~vLGHEgAGiVe~VG~gVt~vkpG   80 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEGFPAVLGHEGAGIVEAVGEGVTSVKPG   80 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCCCceecccccccEEEEecCCccccCCC
Confidence            467999999999999999999999999999999999999999999999988  789999999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCcccccc-ccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLG-LERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~-~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      |+|+.....+|+.|..|.++++++|.... .+..|.+ .||..|+..++...+++.+.++|++|..++..+++++++..+
T Consensus        81 DhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m-~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p  159 (366)
T COG1062          81 DHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAP  159 (366)
T ss_pred             CEEEEcccCCCCCCchhhCCCcccccchhhhcccccc-cCCceeeecCCcceeeeeccccchhheeecccceEECCCCCC
Confidence            99999999999999999999999999544 4467777 899999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      ++.++++.|...|++.++.+.++++++++|.|+|.|++|++++|-|+..|+.+||++|.+++|++++++||+++++|..+
T Consensus       160 ~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~  239 (366)
T COG1062         160 LEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKE  239 (366)
T ss_pred             ccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CCc-hHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          248 NNE-PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~-~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        . +..+.+.++|++++|.+|||+|....++++++++.++|+.
T Consensus       240 --~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~  281 (366)
T COG1062         240 --VDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTS  281 (366)
T ss_pred             --hhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeE
Confidence              4 6999999999999999999999999999999999998864

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.6e-48  Score=338.33  Aligned_cols=257  Identities=27%  Similarity=0.434  Sum_probs=232.3

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      .+|+|+++.+++. +++++.|.|++ +|+||+|++.++|||++|+++|....      +.|+++|||.+|+|+++|+.|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            4679999999986 99999999988 99999999999999999999997666      5799999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      ++++||||++.|..+|+.|+.|++|.||.|+...|...+  +.+|                  ++++|++.++++++|+|
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atp--p~~G------------------~la~y~~~~~dfc~KLP  141 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATP--PVDG------------------TLAEYYVHPADFCYKLP  141 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCccccccCC--CcCC------------------ceEEEEEechHheeeCC
Confidence            999999999999999999999999999999999995443  3444                  99999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      ++++++++|++. +++++|++ -++++++.|.+|||+|+|++|+.+...|+++|+.+|+.++..++|+++|+++|++.+.
T Consensus       142 d~vs~eeGAl~e-PLsV~~HA-cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~  219 (354)
T KOG0024|consen  142 DNVSFEEGALIE-PLSVGVHA-CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTD  219 (354)
T ss_pred             CCCchhhccccc-chhhhhhh-hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEe
Confidence            999999999998 79999997 5899999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCC--chHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNN--EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~--~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +....+  +.+.+.++...+. .+|++|||+|....++.++..++.+|++
T Consensus       220 ~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~  269 (354)
T KOG0024|consen  220 PSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTV  269 (354)
T ss_pred             eccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEE
Confidence            654422  3444555554443 6999999999999999999999999974

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=8.4e-46  Score=342.83  Aligned_cols=289  Identities=80%  Similarity=1.309  Sum_probs=244.9

Q ss_pred             CccCCCCcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCC
Q 022819            2 STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPG   81 (291)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~   81 (291)
                      |.|+.+|+...|||+++.++++.++++++|.|.|+++||+|||.+++||++|+..+.+...+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~~~p~i~GhE~~G~V~~vG~~   81 (378)
T PLN02827          2 SSSISQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQALFPRIFGHEASGIVESIGEG   81 (378)
T ss_pred             CccccCcccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCCCCCeeecccceEEEEEcCCC
Confidence            45788888899999999998877999999999999999999999999999999998776557899999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEE
Q 022819           82 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK  161 (291)
Q Consensus        82 ~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (291)
                      +++|++||||++.+..+|+.|.+|.++.+++|+.......|.+..++..++...|..+.++...|+|++|+.++.+.+++
T Consensus        82 v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~  161 (378)
T PLN02827         82 VTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK  161 (378)
T ss_pred             CcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEE
Confidence            99999999999999899999999999999999875432223221111111111111111122346999999999999999


Q ss_pred             CCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce
Q 022819          162 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE  241 (291)
Q Consensus       162 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~  241 (291)
                      +|+++++++++.+.+.+.++|.++++..+++++++|||+|+|++|++++|+|+.+|+..|++++.+++++++++++|++.
T Consensus       162 iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~  241 (378)
T PLN02827        162 VDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTD  241 (378)
T ss_pred             CCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence            99999999999998888999988778888999999999999999999999999999967889988999999999999999


Q ss_pred             EeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       242 ~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      ++++++.+.++.+.+++++.+++|+|||++|....+..+++.++++ |++
T Consensus       242 ~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~i  291 (378)
T PLN02827        242 FINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLT  291 (378)
T ss_pred             EEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEE
Confidence            9987642346777888887668999999999977899999999998 886

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.2e-46  Score=320.39  Aligned_cols=263  Identities=27%  Similarity=0.414  Sum_probs=236.9

Q ss_pred             cceeeeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCC
Q 022819            9 QVITCKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      .+.+.++|.+..++.  +++++++++|+++++||+|+|+++|||.+|++.+.+..   .+|+++|||.+|+|+++|++|+
T Consensus         6 ~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~V~   85 (360)
T KOG0023|consen    6 IPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSNVT   85 (360)
T ss_pred             CchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCCcc
Confidence            567889999999988  46779999999999999999999999999999999888   7899999999999999999999


Q ss_pred             CCCCCCEE-EeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEEC
Q 022819           84 EFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  162 (291)
Q Consensus        84 ~~~~GdrV-~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  162 (291)
                      +|++|||| +-....+|..|++|.++++++|+...++.+|+. .||.             -.+|+|++|++++..++++|
T Consensus        86 ~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~-~DGt-------------~~~ggf~~~~~v~~~~a~kI  151 (360)
T KOG0023|consen   86 GFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVY-HDGT-------------ITQGGFQEYAVVDEVFAIKI  151 (360)
T ss_pred             cccccCeeeeeEEeccccCccccccCCcccCCceeEeccccc-cCCC-------------CccCccceeEEEeeeeEEEC
Confidence            99999999 666678999999999999999999999888877 5662             12468999999999999999


Q ss_pred             CCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-hhHHHHHHcCCce
Q 022819          163 SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP-EKCEKAKAFGVTE  241 (291)
Q Consensus       163 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~~~a~~~g~~~  241 (291)
                      |++++++.||-+.|+..|.|..| ...++.||+++-|.|+|++|.+++|+|+++|. +|+++++++ +|.+..+.||++.
T Consensus       152 P~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGAd~  229 (360)
T KOG0023|consen  152 PENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGADV  229 (360)
T ss_pred             CCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCcce
Confidence            99999999999999999999975 77778899999999997799999999999999 999999987 6777788899999


Q ss_pred             EeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       242 ~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++..+ ++++.+.+...+++.+|.|.+.  ....++.++.+|+.+|++
T Consensus       230 fv~~~~-d~d~~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk~~Gt~  275 (360)
T KOG0023|consen  230 FVDSTE-DPDIMKAIMKTTDGGIDTVSNL--AEHALEPLLGLLKVNGTL  275 (360)
T ss_pred             eEEecC-CHHHHHHHHHhhcCcceeeeec--cccchHHHHHHhhcCCEE
Confidence            998873 3888899999888888888876  445689999999999986

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.3e-44  Score=335.22  Aligned_cols=287  Identities=55%  Similarity=1.019  Sum_probs=240.7

Q ss_pred             cCCCCcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcC
Q 022819            4 SIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVG   79 (291)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG   79 (291)
                      |..++.+++|||+++.++++++.++++|.|.|+++||+|||++++||++|++.+.|..    .+|.++|||++|+|+++|
T Consensus         2 ~~~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG   81 (381)
T PLN02740          2 SETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVG   81 (381)
T ss_pred             ccccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeC
Confidence            4556678899999999998889999999999999999999999999999999998764    458899999999999999


Q ss_pred             CCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccc-cccCCcccceecc--CCccccccCccceeeEEEeec
Q 022819           80 PGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRG-VMHSDQQTRFSIK--GKPVYHYCAVSSFSEYTVVHS  156 (291)
Q Consensus        80 ~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g-~~~~~g~~~~~~~--~~~~~~~~~~g~~~~~~~~~~  156 (291)
                      +++..|++||||++.+..+|+.|.+|.+++++.|+......+. ....+|-.++...  +....++...|+|+||+.++.
T Consensus        82 ~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~  161 (381)
T PLN02740         82 EGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDS  161 (381)
T ss_pred             CCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEeh
Confidence            9999999999999999999999999999999999886532110 0000110000000  000011122469999999999


Q ss_pred             cceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          157 GCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       157 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      ++++++|+++++++++.+++.+.|||+++++..+++++++|||+|+|++|++++|+|+.+|+++|++++++++|++.+++
T Consensus       162 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        162 ACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             HHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            99999999999999999999999999988888999999999999999999999999999999679999999999999999


Q ss_pred             cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          237 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       237 ~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      +|++.++++++.+.++.+.+++++.+++|++||++|.+..+..++.+++++ |++
T Consensus       242 ~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~  296 (381)
T PLN02740        242 MGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLT  296 (381)
T ss_pred             cCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEE
Confidence            999999987652235777888887668999999999988899999999986 875

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=2.2e-44  Score=332.25  Aligned_cols=277  Identities=48%  Similarity=0.886  Sum_probs=236.5

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++..++++++++++|.|+|.++||+|||.+++||++|++.+.|..   .+|.++|||++|+|+++|+++++|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            7899999988889999999999999999999999999999999988764   4589999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      ||++.+..+|+.|.+|..+.++.|+..... .+|+. .+|..++..+|..++++.+.|+|++|+.++.++++++|+++++
T Consensus        82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~  160 (368)
T TIGR02818        82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL  160 (368)
T ss_pred             EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence            999998899999999999999999875321 12221 2222222222222233333479999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      ++++.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++.++++++.++++|++.++++.+.
T Consensus       161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~  240 (368)
T TIGR02818       161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDY  240 (368)
T ss_pred             HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEccccc
Confidence            99999999999999998888899999999999999999999999999999779999999999999999999999987642


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      ..++.+.+++++.+++|++||++|++..+..++++++++ |++
T Consensus       241 ~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~  283 (368)
T TIGR02818       241 DKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGES  283 (368)
T ss_pred             chhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeE
Confidence            345667788887778999999999878899999999886 875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=6.4e-44  Score=329.17  Aligned_cols=278  Identities=52%  Similarity=0.959  Sum_probs=238.7

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      +|||+++.+++++++++++|.|.|+++||+|||++++||++|+..+.|.+   .+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG   81 (368)
T cd08300           2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG   81 (368)
T ss_pred             cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence            68999999888889999999999999999999999999999999888754   568899999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      |||++.+..+|+.|.+|.+++++.|.+.... ..|.. .+|..++.++|...+++.+.|+|++|+.++.+.++++|++++
T Consensus        82 drV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~  160 (368)
T cd08300          82 DHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP  160 (368)
T ss_pred             CEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence            9999999999999999999999999864321 12222 222222222333333333457999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      +++++.+++.+.++|+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|+++++++++++.++++|++.++++++
T Consensus       161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~  240 (368)
T cd08300         161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKD  240 (368)
T ss_pred             hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccc
Confidence            99999999999999998888889999999999999999999999999999967999999999999999999999998865


Q ss_pred             CCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      .++++.+.+++++.+++|+|||++|++..+..++++++++ |++
T Consensus       241 ~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~  284 (368)
T cd08300         241 HDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTS  284 (368)
T ss_pred             cchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeE
Confidence            3236778888888779999999999877899999999886 875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=7.7e-44  Score=328.64  Aligned_cols=280  Identities=63%  Similarity=1.129  Sum_probs=238.2

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      ++|||+++.+++++++++++|.|+|+++||+|||.+++||++|+..+.|..   .+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence            478999999988889999999999999999999999999999999988864   45889999999999999999999999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      ||||++.+..+|+.|.+|..++++.|...... ..|.+..++..++...|...+++...|+|++|+.++..+++++|+++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~  160 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA  160 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence            99999999999999999999999999886432 11222112212222222222223234689999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++++++++.+.|+|.++++..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.+++++
T Consensus       161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~  240 (369)
T cd08301         161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK  240 (369)
T ss_pred             CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEccc
Confidence            99999999999999999888888999999999999999999999999999987799999999999999999999998876


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      +.++++.+.+++++.+++|++||++|....+..++++++++ |++
T Consensus       241 ~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~  285 (369)
T cd08301         241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVT  285 (369)
T ss_pred             ccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEE
Confidence            43345677788877668999999999877889999999996 875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=7.1e-44  Score=329.18  Aligned_cols=275  Identities=36%  Similarity=0.650  Sum_probs=233.8

Q ss_pred             eeEEEEecCC--------CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCC
Q 022819           13 CKAAVAWGAG--------QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGV   82 (291)
Q Consensus        13 ~~a~~~~~~~--------~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~   82 (291)
                      |||+++.+++        +.++++++|.|.|+++||+|||.+++||++|++.+.|..  .+|.++|||++|+|+++|+++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~~~p~i~GhE~~G~V~~vG~~v   80 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPLPMALGHEAAGVVVEVGEGV   80 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCCCCCccCCccceeEEEEeCCCC
Confidence            6899999865        348999999999999999999999999999999998865  568899999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccccCccceeeEEEeeccceEE
Q 022819           83 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK  161 (291)
Q Consensus        83 ~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (291)
                      ++|++||||++.+..+|+.|..|..++++.|...... ..|.. .+|...+..++..+.+..+.|+|++|+.++.+++++
T Consensus        81 ~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~  159 (371)
T cd08281          81 TDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVK  159 (371)
T ss_pred             CcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceEE
Confidence            9999999999888889999999999999999875321 11211 111111111111111112236999999999999999


Q ss_pred             CCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce
Q 022819          162 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE  241 (291)
Q Consensus       162 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~  241 (291)
                      +|+++++++|+.+++.+.|||.++.+..+++++++|||+|+|++|++++|+|+.+|+++|++++.+++|+++++++|++.
T Consensus       160 lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~  239 (371)
T cd08281         160 IDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA  239 (371)
T ss_pred             CCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce
Confidence            99999999999999899999998888889999999999999999999999999999967999999999999999999999


Q ss_pred             EeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       242 ~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++++  .++.+.+++++.+++|++||++|.+..+..++++++++|++
T Consensus       240 ~i~~~~--~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~i  286 (371)
T cd08281         240 TVNAGD--PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTT  286 (371)
T ss_pred             EeCCCc--hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEE
Confidence            998865  67888888887768999999999878899999999999986

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.5e-43  Score=325.54  Aligned_cols=269  Identities=32%  Similarity=0.532  Sum_probs=233.8

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      +|||+++.+++++++++++|.|.|+++||+|||.++++|++|++.+.|..  .+|.++|||++|+|+++|+++.+|++||
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   80 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDEFPFLLGHEAAGVVEAVGEGVTDVAPGD   80 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccccCCcccccceEEEEEEeCCCCcccCCCC
Confidence            58999999999889999999999999999999999999999999988854  5688999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      ||++.+..+|+.|..|.++++++|.............+|        .........|+|+||+.++.++++++|++++++
T Consensus        81 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g--------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~  152 (358)
T TIGR03451        81 YVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDG--------TELSPALGIGAFAEKTLVHAGQCTKVDPAADPA  152 (358)
T ss_pred             EEEEccCCCCCCChHHhCcCcccCcCccccccccccccC--------cccccccccccccceEEEehhheEECCCCCChh
Confidence            999999999999999999999999854321110000011        000000113699999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      +|+.+++.+.++|.++.+..+++++++|||+|+|++|++++|+|+.+|+++|+++++++++++.++++|++.++++++  
T Consensus       153 ~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~--  230 (358)
T TIGR03451       153 AAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG--  230 (358)
T ss_pred             HhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCC--
Confidence            999999999999988888889999999999999999999999999999966999999999999999999999998865  


Q ss_pred             chHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++.+.+++.+++ ++|++||++|++..+..++++++++|++
T Consensus       231 ~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~i  272 (358)
T TIGR03451       231 TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTV  272 (358)
T ss_pred             cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence            6777888888877 8999999999877899999999999986

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=5.6e-43  Score=322.56  Aligned_cols=279  Identities=53%  Similarity=0.965  Sum_probs=239.1

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      ++|||+++.+.+++++++++|.|.++++||+|||+++++|++|++.+.|..  .+|.++|||++|+|+++|+++..|++|
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   80 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKATLFPVILGHEGAGIVESVGEGVTNLKPG   80 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCCCCCCeecccceeEEEEeeCCCCccCCCC
Confidence            467999999888889999999999999999999999999999999988765  567899999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      |||++.+..+|+.|.+|.++.++.|+.......|.. .++..++...+...+++...|+|++|+.++.+.++++|+++++
T Consensus        81 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~~  159 (365)
T cd08277          81 DKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPL  159 (365)
T ss_pred             CEEEECCCCCCCCCchhcCcCcccCcCccccccccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCCCH
Confidence            999999899999999999999999998765444543 2222222222222222333479999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      ++++.+++++.|||+++.+..+++++++|+|+|+|++|++++|+|+.+|+.+|+++++++++++.++++|++.++++++.
T Consensus       160 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~  239 (365)
T cd08277         160 EHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDS  239 (365)
T ss_pred             HHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccc
Confidence            99999999999999988888899999999999999999999999999999779999999999999999999999887642


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      ..++.+.+++++.+++|++||++|....+..++++++++ |++
T Consensus       240 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~  282 (365)
T cd08277         240 DKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVS  282 (365)
T ss_pred             cchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEE
Confidence            334567777777678999999999878889999999885 775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=2.3e-42  Score=315.08  Aligned_cols=253  Identities=32%  Similarity=0.507  Sum_probs=225.4

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |||+++.+++. ++++++|.|.|+++||+||+.++++|++|++.+.+.+    .+|.++|||++|+|+++|+++++|++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            68999998764 9999999999999999999999999999999876653    257899999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      |||++.+..+|+.|..|.+++++.|..... .+|.. .+                  |+|++|+.++.++++++|+++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~-~~g~~-~~------------------G~~ae~~~v~~~~~~~~P~~~~~  139 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA-AYGWN-RD------------------GGHAEYMLVPEKTLIPLPDDLSF  139 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc-ccccC-CC------------------CcceeEEEechHHeEECCCCCCH
Confidence            999999999999999999999999986543 23322 22                  49999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      ++|+.+++++.|||+++ +...+.++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.++++++ 
T Consensus       140 ~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~-  217 (339)
T cd08239         140 ADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ-  217 (339)
T ss_pred             HHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc-
Confidence            99999999999999986 5677889999999999999999999999999954999999999999999999999998865 


Q ss_pred             CchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       .+ .+.+.+++.+ ++|++||++|++..+..++++++++|++
T Consensus       218 -~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~  258 (339)
T cd08239         218 -DD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRL  258 (339)
T ss_pred             -ch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence             44 6677777777 8999999999987788999999999986

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=2e-42  Score=313.23  Aligned_cols=229  Identities=29%  Similarity=0.411  Sum_probs=209.0

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |+++++.+.+.|  ++++|+|.|.|+++||||||.+++||+.|...++|..    .+|.++|.|++|+|+++|+++++|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            689999988776  8899999999999999999999999999999999853    4899999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||||+... ..|                          .                  .|+|+||..++.+.++++|+++
T Consensus        81 ~GdrV~~~~-~~~--------------------------~------------------~G~~AEy~~v~a~~~~~~P~~l  115 (326)
T COG0604          81 VGDRVAALG-GVG--------------------------R------------------DGGYAEYVVVPADWLVPLPDGL  115 (326)
T ss_pred             CCCEEEEcc-CCC--------------------------C------------------CCcceeEEEecHHHceeCCCCC
Confidence            999997763 100                          1                  1499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++++||++++.++|||+++.+..+++++++|||+|+ |++|.+++|+|+++|+ +++++.+++++.++++++|+++++++
T Consensus       116 s~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y  194 (326)
T COG0604         116 SFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINY  194 (326)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcC
Confidence            999999999999999999999999999999999975 9999999999999998 67777778888889999999999999


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++  .++.+.+++++++ ++|+|||++|+ +.+..+++.|+++|++
T Consensus       195 ~~--~~~~~~v~~~t~g~gvDvv~D~vG~-~~~~~~l~~l~~~G~l  237 (326)
T COG0604         195 RE--EDFVEQVRELTGGKGVDVVLDTVGG-DTFAASLAALAPGGRL  237 (326)
T ss_pred             Cc--ccHHHHHHHHcCCCCceEEEECCCH-HHHHHHHHHhccCCEE
Confidence            86  7799999999999 99999999999 6788899999999986

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-41  Score=310.15  Aligned_cols=255  Identities=22%  Similarity=0.369  Sum_probs=213.3

Q ss_pred             ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhc-ccC-----CCCcccCcceeEEEEEcCCCCC
Q 022819           10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQA-----IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~-g~~-----~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      ...+++++++++++ ++++++|.| +.++||||||.+++||++|++.+. |..     .+|.++|||++|+|+++  +++
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~   77 (343)
T PRK09880          2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS   77 (343)
T ss_pred             cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence            35679999998877 999999987 689999999999999999999875 321     46899999999999999  678


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      +|++||||++.+..+|+.|.+|.++++++|+...+  +|....              .....|+|+||+.++.+.++++|
T Consensus        78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~--~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~P  141 (343)
T PRK09880         78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF--FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPYP  141 (343)
T ss_pred             cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce--eecccc--------------cCCCCCceeeeEEechHHeEECC
Confidence            89999999999999999999999999999988654  221100              00012599999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      +++++++++.. .++.++|+++. .....++++|+|+|+|++|++++|+|+.+|+++|++++++++++++++++|++.++
T Consensus       142 ~~l~~~~aa~~-~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi  219 (343)
T PRK09880        142 EKADEKVMAFA-EPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV  219 (343)
T ss_pred             CCCCHHHHHhh-cHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEe
Confidence            99998876644 47789999864 44556899999999999999999999999997799999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++  .++.+.. +. .+++|+|||++|.+..+..++++++++|++
T Consensus       220 ~~~~--~~~~~~~-~~-~g~~D~vid~~G~~~~~~~~~~~l~~~G~i  262 (343)
T PRK09880        220 NPQN--DDLDHYK-AE-KGYFDVSFEVSGHPSSINTCLEVTRAKGVM  262 (343)
T ss_pred             cCCc--ccHHHHh-cc-CCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence            8865  4443322 21 236999999999977899999999999986

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=1.9e-41  Score=314.91  Aligned_cols=260  Identities=25%  Similarity=0.389  Sum_probs=216.8

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCCC-------CCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPPQ-------PEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGV   82 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~   82 (291)
                      .|||+++.++++ ++++++|.|.|+       ++||||||++++||++|++.+.|..  .+|.++|||++|+|+++|+++
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~~~p~i~GhE~~G~V~~vG~~V   80 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTAPTGLVLGHEITGEVIEKGRDV   80 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCCCCCccccceeEEEEEEEcCcc
Confidence            479999998886 999999999874       6899999999999999999998864  568999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCccccCCCCCcccccccc----ccccccCCcccceeccCCccccccCccceeeEEEeecc-
Q 022819           83 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE----RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-  157 (291)
Q Consensus        83 ~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~----~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  157 (291)
                      .+|++||||++.+..+|+.|.+|++++++.|+.....    .+|+... |              ...|+|+||+.++.. 
T Consensus        81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-~--------------~~~G~~aey~~v~~~~  145 (393)
T TIGR02819        81 EFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDM-G--------------GWVGGQSEYVMVPYAD  145 (393)
T ss_pred             ccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccccc-C--------------CCCCceEEEEEechhh
Confidence            9999999999999999999999999999999974321    1121100 0              002599999999964 


Q ss_pred             -ceEECCCCCCh----hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 022819          158 -CAVKVSSIAPL----EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE  232 (291)
Q Consensus       158 -~~~~ip~~~~~----~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~  232 (291)
                       +++++|++++.    ..++.+...+.++|+++ +..+++++++|||.|+|++|++++|+|+.+|++.+++++.+++|++
T Consensus       146 ~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~  224 (393)
T TIGR02819       146 FNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLA  224 (393)
T ss_pred             CceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence             79999998753    34667777888999976 4578999999999989999999999999999966777778889999


Q ss_pred             HHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCCh--------------HHHHHHHHhhccCccc
Q 022819          233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDT--------------GMITTALQSCCDVRSI  290 (291)
Q Consensus       233 ~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~--------------~~~~~~~~~l~~~G~i  290 (291)
                      +++++|++. +++.. ..++.+.+.+++.+ ++|++||++|.+              ..+++++++++++|++
T Consensus       225 ~a~~~Ga~~-v~~~~-~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i  295 (393)
T TIGR02819       225 QARSFGCET-VDLSK-DATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAI  295 (393)
T ss_pred             HHHHcCCeE-EecCC-cccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEE
Confidence            999999974 44432 14566778888776 899999999985              4799999999999986

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1.8e-41  Score=310.39  Aligned_cols=258  Identities=30%  Similarity=0.428  Sum_probs=211.2

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCc-ccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPR-IFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~-~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |++++++.+....++++.+.|.+.++||+|||.++|||++|++.+.+..   ..|. ++|||++|+|+++| .+..|++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G   79 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG   79 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence            5677888776544477777777899999999999999999999999865   3344 89999999999999 77789999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEE-CCCCCC
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK-VSSIAP  167 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-ip~~~~  167 (291)
                      |||++.+..+|+.|.+|+.+.++.|++..+  .|+....+              +-.|+|+||+.+|.++.+. +|++++
T Consensus        80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~--~g~~~~~~--------------~~~G~~aEyv~vp~~~~~~~~pd~~~  143 (350)
T COG1063          80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGF--YGYAGLGG--------------GIDGGFAEYVRVPADFNLAKLPDGID  143 (350)
T ss_pred             CEEEECCCcCCCCChhHhCcCcccCCCccc--cccccccC--------------CCCCceEEEEEeccccCeecCCCCCC
Confidence            999999999999999999999999995543  22110000              0114999999999765555 578874


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEeCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPN  246 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i~~~  246 (291)
                       .+++++.-++.+++++........++.+|+|+|+|++|++++++++.+|+.+||+++.+++|++++++ .|++.+++..
T Consensus       144 -~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~  222 (350)
T COG1063         144 -EEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPS  222 (350)
T ss_pred             -hhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCc
Confidence             55555555999998874555555666699999999999999999999999999999999999999999 5666566554


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .  ++....+.+.+.+ ++|++|||+|.+..+++++++++++|++
T Consensus       223 ~--~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v  265 (350)
T COG1063         223 E--DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTV  265 (350)
T ss_pred             c--ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            3  3677788888988 9999999999988999999999999986

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=2.6e-40  Score=304.32  Aligned_cols=269  Identities=21%  Similarity=0.324  Sum_probs=222.4

Q ss_pred             CCccCCCCcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEE
Q 022819            1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVES   77 (291)
Q Consensus         1 m~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~   77 (291)
                      |-+|....-+++++++...+..+++++.+++.|.|+++||+|||.+++||++|++.+.|..   .+|.++|||++|+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~   80 (360)
T PLN02586          1 MAKSPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTK   80 (360)
T ss_pred             CCCChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEE
Confidence            5555544466888899988877779999999999999999999999999999999987754   4588999999999999


Q ss_pred             cCCCCCCCCCCCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeec
Q 022819           78 VGPGVTEFNEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS  156 (291)
Q Consensus        78 vG~~~~~~~~GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  156 (291)
                      +|+++++|++||||++.+. .+|+.|.+|.++++++|+...+...+.. .+|.             ...|+|++|+.++.
T Consensus        81 vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~-~~g~-------------~~~G~~aey~~v~~  146 (360)
T PLN02586         81 LGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIG-HDGT-------------KNYGGYSDMIVVDQ  146 (360)
T ss_pred             ECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccc-cCCC-------------cCCCccceEEEEch
Confidence            9999999999999986544 5799999999999999997643211000 0010             00249999999999


Q ss_pred             cceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhh-HHHHH
Q 022819          157 GCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK-CEKAK  235 (291)
Q Consensus       157 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~-~~~a~  235 (291)
                      +.++++|+++++++++.+++.+.|+|+++.+...++++++|+|.|+|++|++++|+|+.+|+ ++++++.++++ .+.++
T Consensus       147 ~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~  225 (360)
T PLN02586        147 HFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN  225 (360)
T ss_pred             HHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH
Confidence            99999999999999999999999999987666777899999999999999999999999999 77777666655 45668


Q ss_pred             HcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          236 AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       236 ~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|++.++++.+  .   +.+++.++ ++|+|||++|.+..++.++++++++|++
T Consensus       226 ~~Ga~~vi~~~~--~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~i  274 (360)
T PLN02586        226 RLGADSFLVSTD--P---EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVNGKL  274 (360)
T ss_pred             hCCCcEEEcCCC--H---HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCCcEE
Confidence            899999887653  2   24445443 6999999999877899999999999986

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=3e-39  Score=298.61  Aligned_cols=280  Identities=49%  Similarity=0.863  Sum_probs=234.8

Q ss_pred             ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      ..+|++.++..++++++++++|.|.+.++||+||++++++|++|.+.+.|..  .+|.++|||++|+|+++|+++..|++
T Consensus         5 ~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   84 (373)
T cd08299           5 VIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVTPFPVILGHEAAGIVESVGEGVTTVKP   84 (373)
T ss_pred             cceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCCCCCCccccccceEEEEEeCCCCccCCC
Confidence            4568999999988889999999999999999999999999999999988864  46789999999999999999999999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCccccccccc-cccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      ||+|++.+..+|+.|.+|.+++++.|+...... .|.+ .++..+..++|....+++..|+|++|+.++.+.++++|+++
T Consensus        85 Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l  163 (373)
T cd08299          85 GDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAA  163 (373)
T ss_pred             CCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCCCC
Confidence            999999998999999999999999998754311 1221 12222222333222333345799999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++++++.+++.+||+++.+..+++++++|+|+|+|++|++++++|+.+|+.+|+++++++++++.++++|++.+++..
T Consensus       164 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~  243 (373)
T cd08299         164 PLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQ  243 (373)
T ss_pred             ChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccc
Confidence            99999999999999999888889999999999999899999999999999986799999999999999999999888876


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhh-ccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC-CDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l-~~~G~i  290 (291)
                      +.+.++.+.+.+++.+++|+++|++|++..+..++..+ +++|++
T Consensus       244 ~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~  288 (373)
T cd08299         244 DYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVS  288 (373)
T ss_pred             ccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEE
Confidence            42334667777776668999999999877788877766 457764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=1.4e-39  Score=298.19  Aligned_cols=251  Identities=28%  Similarity=0.469  Sum_probs=220.2

Q ss_pred             EEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc-C---CCCcccCcceeEEEEEcCCCCCCCCCCCEE
Q 022819           16 AVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ-A---IFPRIFGHEASGIVESVGPGVTEFNEGEHV   91 (291)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~-~---~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV   91 (291)
                      +++.+++++++++++|.|.|+++||+|||.++++|++|++.+.+. .   .+|.++|||++|+|+++|+++..+ +||||
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            567788877999999999999999999999999999999886332 2   468899999999999999999887 99999


Q ss_pred             EeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC------C
Q 022819           92 LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS------I  165 (291)
Q Consensus        92 ~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~------~  165 (291)
                      ++.+..+|+.|..|..++++.|....+  .|.. .+                  |+|++|+.++.++++++|+      +
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~--~g~~-~~------------------G~~ae~~~v~~~~~~~ip~~~~~~~~  139 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM--PGND-MQ------------------GGFASHIVVPAKGLCVVDEARLAAAG  139 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc--cCcC-CC------------------CcccceEEechHHeEECCcccccccC
Confidence            999999999999999999999987543  2321 12                  4999999999999999999      8


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++++++.+.+.+.++|+++. ..+++++++|+|+|+|++|++++|+|+.+|+ +|+++++++++++.++++|++.++++
T Consensus       140 ~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~~  217 (349)
T TIGR03201       140 LPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLNP  217 (349)
T ss_pred             CCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEecC
Confidence            999999999889999999864 5788999999999999999999999999999 89999999999999999999998887


Q ss_pred             CCCC-chHHHHHHHHhcC-Ccc----EEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNN-EPVQQVIKRITDG-GAD----YSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~-~~~~~~~~~~~~g-~~d----~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.+ .++.+.+++++++ ++|    ++|||+|+...+..++++++++|++
T Consensus       218 ~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~i  268 (349)
T TIGR03201       218 KDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTL  268 (349)
T ss_pred             ccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeE
Confidence            5421 3577778888877 776    8999999988888999999999986

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.1e-39  Score=299.60  Aligned_cols=250  Identities=22%  Similarity=0.297  Sum_probs=204.1

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++..++.+++++++|.|+|+++||||||++++||++|++.+.|.+      .+|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            5789988654449999999999999999999999999999999998864      24689999999999999999 9999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||||+..+..+|+.|..|..+++++|....+...|....+                  |+|++|+.++.+.++++|+++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~------------------G~~aey~~~~~~~~~~~P~~~  141 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLH------------------GFMREYFVDDPEYLVKVPPSL  141 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCC------------------ccceeEEEeccccEEECCCCC
Confidence            99999999888999999999999999987654333321112                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHh------hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---ChhhHHHHHHc
Q 022819          167 PLEKICLLSCGLSAGLGAAWN------VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT---NPEKCEKAKAF  237 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~------~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~---~~~~~~~a~~~  237 (291)
                      + +. +++..++.+++.++..      ..+.+++++|+|+|+|++|++++|+|+.+|+ +|+++++   +++|+++++++
T Consensus       142 ~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~  218 (355)
T cd08230         142 A-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL  218 (355)
T ss_pred             C-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc
Confidence            8 43 4444455555443322      2235789999999999999999999999999 8999887   68899999999


Q ss_pred             CCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |++. +++.+  +++.+ .+  ..+++|+|||++|.+..+..+++.++++|++
T Consensus       219 Ga~~-v~~~~--~~~~~-~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~  265 (355)
T cd08230         219 GATY-VNSSK--TPVAE-VK--LVGEFDLIIEATGVPPLAFEALPALAPNGVV  265 (355)
T ss_pred             CCEE-ecCCc--cchhh-hh--hcCCCCEEEECcCCHHHHHHHHHHccCCcEE
Confidence            9986 56543  33333 21  1248999999999877899999999999986

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=8e-39  Score=294.90  Aligned_cols=277  Identities=48%  Similarity=0.859  Sum_probs=245.1

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      ++|+++.+.+++++++++|.|.+++++|+||+.++++|++|++.+.+..  ..|.++|||++|+|+++|+++..+++||+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~   80 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPTPLPVILGHEGAGIVESIGPGVTTLKPGDK   80 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCCCCCcccccceeEEEEEeCCCcccCCCCCE
Confidence            4788999888779999999999999999999999999999999887765  45679999999999999999999999999


Q ss_pred             EEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           91 VLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        91 V~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      |++.+..+|+.|.+|..+.+++|...... .+|.. .+|..++..||...+++.+.|+|++|+.++.+.++++|++++++
T Consensus        81 Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~  159 (365)
T cd05279          81 VIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLE  159 (365)
T ss_pred             EEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCHH
Confidence            99998899999999999999999876543 33444 56777777888877787777899999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      +++.+.+.+.+||+++.+..+++++++|||+|+|++|++++++|+.+|+..++++++++++.+.++++|++.+++..+.+
T Consensus       160 ~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~  239 (365)
T cd05279         160 KVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQD  239 (365)
T ss_pred             HhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeeccccccc
Confidence            99999999999999888889999999999998899999999999999996688888899999999999999888876522


Q ss_pred             chHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhc-cCccc
Q 022819          250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC-DVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~-~~G~i  290 (291)
                      .++.+.+.+++++++|++||++|....+..++++++ ++|++
T Consensus       240 ~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~  281 (365)
T cd05279         240 KPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTS  281 (365)
T ss_pred             chHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEE
Confidence            267777888775589999999997788999999999 88875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=4.6e-39  Score=294.34  Aligned_cols=251  Identities=28%  Similarity=0.429  Sum_probs=216.6

Q ss_pred             eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhc--ccCCCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWE--TQAIFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~--g~~~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++.+++. +++++.|.|.| +++||+|||.++++|++|...+.  +...+|.++|||++|+|+++|+++++|++||
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGd   79 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPGD   79 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Confidence            68999998875 99999999998 59999999999999999987532  2125688999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      ||++.+..+|+.|..|..+.++.|....+  .|.. .+                  |+|++|+.++.+.++++|++++++
T Consensus        80 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~s~~  138 (347)
T PRK10309         80 AVACVPLLPCFTCPECLRGFYSLCAKYDF--IGSR-RD------------------GGNAEYIVVKRKNLFALPTDMPIE  138 (347)
T ss_pred             EEEECCCcCCCCCcchhCcCcccCCCcce--eccC-CC------------------CccceeEEeehHHeEECcCCCCHH
Confidence            99999999999999999999999976543  2221 12                  499999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      +++++. .+.+++++ .+...++++++|+|+|+|++|++++|+|+.+|++.|+++++++++++.++++|++.++++++  
T Consensus       139 ~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--  214 (347)
T PRK10309        139 DGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE--  214 (347)
T ss_pred             Hhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc--
Confidence            999874 45567776 46678899999999999999999999999999966899999999999999999999998764  


Q ss_pred             chHHHHHHHHhcC-Ccc-EEEEccCChHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDG-GAD-YSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g-~~d-~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+ .+.+.+++.+ ++| ++|||+|+...+..++++++++|++
T Consensus       215 ~~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~i  256 (347)
T PRK10309        215 MS-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQL  256 (347)
T ss_pred             cC-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEE
Confidence            33 4556777666 888 9999999988899999999999986

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=8.4e-39  Score=295.63  Aligned_cols=256  Identities=21%  Similarity=0.298  Sum_probs=210.8

Q ss_pred             eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        14 ~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      -+++..+..+++.+.+++.|.|+++||+|||.+++||++|++.+.|.+   .+|.++|||++|+|+++|+++.+|++|||
T Consensus         8 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdr   87 (375)
T PLN02178          8 FGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDR   87 (375)
T ss_pred             EEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCE
Confidence            355555655568888999999999999999999999999999988764   45889999999999999999999999999


Q ss_pred             EEeeccc-CCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           91 VLTVFIG-ECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        91 V~~~~~~-~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      |++.+.. +|+.|.+|.+++++.|+...+...+.. ..|             ....|+|++|+.++.+.++++|++++++
T Consensus        88 V~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~lP~~ls~~  153 (375)
T PLN02178         88 VGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRS-SDG-------------TRNQGGYSDVIVVDHRFVLSIPDGLPSD  153 (375)
T ss_pred             EEEcCccCCCCCChhHhCcchhcCCCccccccccc-cCC-------------CcCCCccccEEEEchHHeEECCCCCCHH
Confidence            9866554 699999999999999998643111000 000             0012599999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-hHHHHHHcCCceEeCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE-KCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~-~~~~a~~~g~~~~i~~~~  247 (291)
                      +++.+.+...|+|+++..... .+++++|+|.|+|++|++++|+|+.+|+ +|++++.+++ +.+.++++|++.++++.+
T Consensus       154 ~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~  232 (375)
T PLN02178        154 SGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTD  232 (375)
T ss_pred             HcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCcC
Confidence            999999999999988655433 3689999999999999999999999999 7888877654 478889999999988653


Q ss_pred             CCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        .   +.+.+.+. ++|++||++|.+..+..++++++++|++
T Consensus       233 --~---~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~G~i  269 (375)
T PLN02178        233 --S---QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVSGKL  269 (375)
T ss_pred             --H---HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCCCEE
Confidence              2   34555543 7999999999877889999999999986

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=2e-38  Score=290.48  Aligned_cols=253  Identities=33%  Similarity=0.535  Sum_probs=223.6

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--------------CCCcccCcceeEEEEEc
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--------------IFPRIFGHEASGIVESV   78 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--------------~~p~~~G~e~~G~V~~v   78 (291)
                      |||+++.++++ ++++++|.|.|+++||+||+.++++|++|+..+.+..              .+|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            68999998765 9999999999999999999999999999987654321              26889999999999999


Q ss_pred             CCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccc
Q 022819           79 GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC  158 (291)
Q Consensus        79 G~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  158 (291)
                      |+++++|++||+|+..+..+|++|.+|..+++++|+...+  .|+...+                  |+|++|+.++.+.
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~~a~~~~~~~~~  139 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF--IGLGGGG------------------GGFAEYVVVPAYH  139 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce--eccCCCC------------------CceeeEEEechHH
Confidence            9999999999999999999999999999999999987653  2221012                  4999999999999


Q ss_pred             eEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 022819          159 AVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       159 ~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      ++++|+++++++++.+ ..+.+||.++ ...+++++++|+|+|+|++|.+++|+|+.+|+.+|+++++++++.++++++|
T Consensus       140 ~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~g  217 (351)
T cd08233         140 VHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELG  217 (351)
T ss_pred             eEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC
Confidence            9999999999999876 4778999987 7888999999999999999999999999999978999999999999999999


Q ss_pred             CceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          239 VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       239 ~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.++++++  .++.+.+++++.+ ++|++||++|.+..+..++++++++|++
T Consensus       218 a~~~i~~~~--~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~  268 (351)
T cd08233         218 ATIVLDPTE--VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTA  268 (351)
T ss_pred             CCEEECCCc--cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEE
Confidence            999998876  6788888888877 7999999999877899999999999986

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.1e-38  Score=288.31  Aligned_cols=242  Identities=24%  Similarity=0.331  Sum_probs=211.1

Q ss_pred             EEEEecCCC----CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           15 AAVAWGAGQ----PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        15 a~~~~~~~~----~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      |+++.+++.    +++++++|.|.|+++||+|||++++||++|.+.+.|.+   .+|.++|||++|+|+++|+++.+|++
T Consensus         1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAV   80 (329)
T ss_pred             CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCC
Confidence            355666653    48999999999999999999999999999999998865   24689999999999999999999999


Q ss_pred             CCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           88 GEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        88 GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      ||||++.+. .+|+.|.+|..++++.|+...+  .|.. .+                  |+|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~  139 (329)
T TIGR02822        81 GDRVGIAWLRRTCGVCRYCRRGAENLCPASRY--TGWD-TD------------------GGYAEYTTVPAAFAYRLPTGY  139 (329)
T ss_pred             CCEEEEcCccCcCCCChHHhCcCcccCCCccc--CCcc-cC------------------CcceeEEEeccccEEECCCCC
Confidence            999987664 4799999999999999988654  3322 22                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++++.+++.+.|||+++ ...+++++++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.+++..
T Consensus       140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~  217 (329)
T TIGR02822       140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAY  217 (329)
T ss_pred             CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccc
Confidence            9999999999999999987 46889999999999999999999999999999 899999999999999999999998753


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  ..         ..++|+++++.+....+..++++++++|++
T Consensus       218 ~--~~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~  250 (329)
T TIGR02822       218 D--TP---------PEPLDAAILFAPAGGLVPPALEALDRGGVL  250 (329)
T ss_pred             c--cC---------cccceEEEECCCcHHHHHHHHHhhCCCcEE
Confidence            2  11         126899999888778899999999999986

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=9.3e-38  Score=287.05  Aligned_cols=259  Identities=24%  Similarity=0.312  Sum_probs=216.6

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      ++++|++++.+++++++++++.|+|+++||+|||.+++||++|+..+.|.+   .+|.++|||++|+|+++|+++++|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~   87 (357)
T PLN02514          8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTV   87 (357)
T ss_pred             ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccC
Confidence            568999999999999999999999999999999999999999999888764   45889999999999999999999999


Q ss_pred             CCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           88 GEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        88 GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      ||+|++.+. ..|+.|..|.++.++.|....+...+.. ..|             ....|+|++|+.++.+.++++|+++
T Consensus        88 Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~iP~~~  153 (357)
T PLN02514         88 GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY-TDG-------------KPTQGGFASAMVVDQKFVVKIPEGM  153 (357)
T ss_pred             CCEEEEcCccccCCCChhHhCCCcccCCCccccccccc-cCC-------------ccCCCccccEEEEchHHeEECCCCC
Confidence            999986554 4699999999999999987643111000 000             0012599999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~i~~  245 (291)
                      ++++++.+++.+.|||+++.+....+++++++|+|+|++|++++|+|+.+|+ ++++++.++++++.+ +++|++.+++.
T Consensus       154 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~  232 (357)
T PLN02514        154 APEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVS  232 (357)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecC
Confidence            9999999999999999987666667899999999999999999999999999 788787777766544 67999888775


Q ss_pred             CCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+  .   ..+.+.+. ++|++||++|....++.++++++++|++
T Consensus       233 ~~--~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~i  271 (357)
T PLN02514        233 SD--A---AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLDGKL  271 (357)
T ss_pred             CC--h---HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccCCEE
Confidence            43  2   23444443 6999999999877899999999999986

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=3e-38  Score=265.16  Aligned_cols=230  Identities=27%  Similarity=0.321  Sum_probs=213.4

Q ss_pred             cceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCC
Q 022819            9 QVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      .+...+.+++++.|.+  +++++.|+|+|+++|++||-.++|+|+.|.-+..|-+   +.|+++|-|++|+|+++|++++
T Consensus         5 ~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt   84 (336)
T KOG1197|consen    5 SPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT   84 (336)
T ss_pred             CCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCcc
Confidence            3455688888887765  8999999999999999999999999999999999988   6789999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      ++++||||+....                                                .|.|+++..+|...++++|
T Consensus        85 drkvGDrVayl~~------------------------------------------------~g~yaee~~vP~~kv~~vp  116 (336)
T KOG1197|consen   85 DRKVGDRVAYLNP------------------------------------------------FGAYAEEVTVPSVKVFKVP  116 (336)
T ss_pred             ccccccEEEEecc------------------------------------------------chhhheeccccceeeccCC
Confidence            9999999965421                                                2599999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G-~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      +.+++++||++.+.++|||..+.+..++++|++|||+. +|++|++++|+++..|+ ++|++.+..+|++.+++-|+.+.
T Consensus       117 e~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h~  195 (336)
T KOG1197|consen  117 EAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEHP  195 (336)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCcce
Confidence            99999999999999999999999999999999999996 49999999999999999 99999999999999999999999


Q ss_pred             eCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |+++.  +|+.+.++++|.| |+|+++|++|. +.++..+.+|++.|.+
T Consensus       196 I~y~~--eD~v~~V~kiTngKGVd~vyDsvG~-dt~~~sl~~Lk~~G~m  241 (336)
T KOG1197|consen  196 IDYST--EDYVDEVKKITNGKGVDAVYDSVGK-DTFAKSLAALKPMGKM  241 (336)
T ss_pred             eeccc--hhHHHHHHhccCCCCceeeeccccc-hhhHHHHHHhccCceE
Confidence            99987  9999999999988 99999999999 7899999999999975

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=1.3e-37  Score=286.86  Aligned_cols=276  Identities=35%  Similarity=0.645  Sum_probs=230.5

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |+|||+++.++++++++++.+.|.+.++||+|||.++++|++|+..+.+..  ..|.++|+|++|+|+++|+++..|++|
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~G   80 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPTPLPAVLGHEGAGVVEAVGSAVTGLKPG   80 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCCCCCcccccceeEEEEEeCCCcccCCCC
Confidence            578999999987789999999999999999999999999999999987754  457799999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccc-cccccCCcccceeccC-Cc-cccccCccceeeEEEeeccceEECCCC
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKG-KP-VYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~-~~-~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      |+|++.+. +|+.|..|..+++++|....... .|.. .+|..-+...+ -. ..+....|+|++|+.++.+.++++|++
T Consensus        81 d~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~  158 (365)
T cd08278          81 DHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD  158 (365)
T ss_pred             CEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence            99998765 89999999999999998654211 1111 11100000000 00 000112469999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++++++.+++.+.+|+.++.+...++++++|+|+|+|++|++++|+|+.+|++.++++++++++.+.++++|++.++++
T Consensus       159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~  238 (365)
T cd08278         159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINP  238 (365)
T ss_pred             CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecC
Confidence            99999999999999999988888899999999999889999999999999999779999999999999999999989887


Q ss_pred             CCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++  .++.+.+.+++.+++|+++|++|.+..+..+++.++++|++
T Consensus       239 ~~--~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~  281 (365)
T cd08278         239 KE--EDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTL  281 (365)
T ss_pred             CC--cCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEE
Confidence            65  66777788877339999999999877899999999999875

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=1.7e-37  Score=285.29  Aligned_cols=263  Identities=28%  Similarity=0.440  Sum_probs=225.8

Q ss_pred             eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCC------
Q 022819           14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTE------   84 (291)
Q Consensus        14 ~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~------   84 (291)
                      ||+++.++++++++++.+.|.|+++||+|||.++++|++|+..+.|..   .+|.++|||++|+|+++|+++.+      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            789999988779999999999999999999999999999999887764   46789999999999999999986      


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc-ceEECC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVS  163 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~ip  163 (291)
                      |++||+|+..+..+|+.|..|..+.+++|....+.  |.....+          .  ....|+|++|+.++.+ +++++|
T Consensus        82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~--~~~~~~~----------~--~~~~g~~a~~~~v~~~~~~~~lP  147 (361)
T cd08231          82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY--GHEASCD----------D--PHLSGGYAEHIYLPPGTAIVRVP  147 (361)
T ss_pred             cCCCCEEEEcccCCCCCChhHhCcCccccccchhc--ccccccc----------C--CCCCcccceEEEecCCCceEECC
Confidence            99999999999999999999999999999887542  2110000          0  0012599999999986 799999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      ++++++.++++++.+.|||+++.+....+++++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|++.++
T Consensus       148 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi  227 (361)
T cd08231         148 DNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATI  227 (361)
T ss_pred             CCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEE
Confidence            99999999999889999999987777777999999999999999999999999987889999999999999999999888


Q ss_pred             CCCCCC-chHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNN-EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~-~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++... .++...+.+++++ ++|++||++|+...+..+++.++++|++
T Consensus       228 ~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~  276 (361)
T cd08231         228 DIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTY  276 (361)
T ss_pred             cCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEE
Confidence            876421 2234567888877 8999999999877889999999999986

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=4.6e-37  Score=281.46  Aligned_cols=256  Identities=27%  Similarity=0.359  Sum_probs=224.2

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++.+++. +.+++.+.|.+.++||+|||.++++|++|+..+.+..   ..|.++|||++|+|+++|+++.+|++||
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd   79 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD   79 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence            68999998875 8899999999999999999999999999998877654   4578999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc--ceEECCCCCC
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAP  167 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~  167 (291)
                      +|++.+..+|+.|..|..++++.|+.... .++..                 ....|+|++|+.++.+  .++++|++++
T Consensus        80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~-~~~~~-----------------~~~~g~~~~y~~v~~~~~~~~~lP~~~~  141 (351)
T cd08285          80 RVIVPAITPDWRSVAAQRGYPSQSGGMLG-GWKFS-----------------NFKDGVFAEYFHVNDADANLAPLPDGLT  141 (351)
T ss_pred             EEEEcCcCCCCCCHHHHCcCcccCcCCCC-Ccccc-----------------CCCCcceeEEEEcchhhCceEECCCCCC
Confidence            99998888999999999999999987521 01000                 0012599999999874  8999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      +++++.++..+.+||++ .+..+++++++|||+|+|++|++++|+|+.+|+..++++++++++.++++++|++.++++++
T Consensus       142 ~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~  220 (351)
T cd08285         142 DEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN  220 (351)
T ss_pred             HHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC
Confidence            99999998899999998 47788999999999988999999999999999977999999999999999999999998865


Q ss_pred             CCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        .++.+.+.+++.+ ++|++||++|++..+..++++++++|++
T Consensus       221 --~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~  262 (351)
T cd08285         221 --GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTI  262 (351)
T ss_pred             --CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEE
Confidence              6677778887766 8999999999877889999999999976

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=3.2e-37  Score=281.81  Aligned_cols=238  Identities=18%  Similarity=0.199  Sum_probs=193.6

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-------CCCcccCcceeEEEEEcCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-------IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-------~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      |.+|++++.+|++ ++++++|.|. +++||+|||+++|||++|+++++|.+       .+|.++|||++|+|+++|.+  
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            3568999999986 9999999995 99999999999999999999998864       35899999999999998764  


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      +|++||||++.+..+|+ |..|.  ..++|+...+.  |.. .+                  |+|+||+.++.++++++|
T Consensus        77 ~~~vGdrV~~~~~~~~~-~~~~~--~~~~c~~~~~~--g~~-~~------------------G~~aey~~v~~~~~~~vP  132 (341)
T cd08237          77 TYKVGTKVVMVPNTPVE-KDEII--PENYLPSSRFR--SSG-YD------------------GFMQDYVFLPPDRLVKLP  132 (341)
T ss_pred             ccCCCCEEEECCCCCch-hcccc--hhccCCCccee--Eec-CC------------------CceEEEEEEchHHeEECC
Confidence            69999999998887777 33453  45678765432  211 22                  499999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhh--cCCCCCCEEEEEcCChHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNV--ADISKGSTVVIFGLGTVGLSVAQGAKA-RGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlV~G~g~~G~~~i~~a~~-~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      +++++++|+++. .++++|+++...  ..++++++|||+|+|++|++++|+|+. +|..+|++++++++|++++++++.+
T Consensus       133 ~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~  211 (341)
T cd08237         133 DNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET  211 (341)
T ss_pred             CCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce
Confidence            999999887665 788888876543  456889999999999999999999986 6655899999999999999886654


Q ss_pred             eEeCCCCCCchHHHHHHHHhcC-CccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          241 EFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       241 ~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      ..++      +       +... ++|+|||++|+   +..+..++++++++|++
T Consensus       212 ~~~~------~-------~~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~i  252 (341)
T cd08237         212 YLID------D-------IPEDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTI  252 (341)
T ss_pred             eehh------h-------hhhccCCcEEEECCCCCccHHHHHHHHHhCcCCcEE
Confidence            3221      1       1122 69999999994   46789999999999986

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=2.4e-36  Score=278.10  Aligned_cols=275  Identities=40%  Similarity=0.726  Sum_probs=231.1

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      |||+++.+++.+++++++|.|.++++||+||+.++++|+.|...+.+..  .+|.++|+|++|+|+++|++++.|++||+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAPLPAVLGHEGAGVVEEVGPGVTGVKPGDH   80 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCCCCCccccccceEEEEEeCCCccccCCCCE
Confidence            6899999998889999999999999999999999999999999888765  45678999999999999999999999999


Q ss_pred             EEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhh
Q 022819           91 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK  170 (291)
Q Consensus        91 V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  170 (291)
                      |+..+..+|++|.+|.+++.+.|......-+|.- .++..++.-.|.........|+|++|+.++.+.++++|+++++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~  159 (363)
T cd08279          81 VVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDR  159 (363)
T ss_pred             EEECCCCCCCCChhhcCCCcccCccccccccccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCChHH
Confidence            9999999999999999999999987642111110 000000000000111112346999999999999999999999999


Q ss_pred             hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 022819          171 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE  250 (291)
Q Consensus       171 aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~  250 (291)
                      ++.+++.+.+||..+.+..++.++++|+|+|+|++|.+++++|+.+|+.+|+++++++++.+.++++|++.+++.+.  .
T Consensus       160 aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~--~  237 (363)
T cd08279         160 AALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE--D  237 (363)
T ss_pred             eehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCC--c
Confidence            99999999999999888899999999999988999999999999999955999999999999999999988888765  5


Q ss_pred             hHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          251 PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       251 ~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++...+.+++.+ ++|++||++++...+..++++++++|++
T Consensus       238 ~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~  278 (363)
T cd08279         238 DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTA  278 (363)
T ss_pred             cHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeE
Confidence            677778887755 8999999999767889999999999876

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.2e-36  Score=275.45  Aligned_cols=250  Identities=25%  Similarity=0.411  Sum_probs=216.6

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++.+++. ++++++|.|.|.++|++||+.++++|++|+..+.|..   .+|.++|||++|+|+++|+++..|++||
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   79 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE   79 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence            58999998874 9999999999999999999999999999999887765   3588999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      +|++.+..+|+.|..|.++++++|....+  +++. .+                  |+|++|+.++...++++|++++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~~~~~~~~~ip~~~~~~  138 (339)
T PRK10083         80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV--LGVH-RD------------------GGFSEYAVVPAKNAHRIPDAIADQ  138 (339)
T ss_pred             EEEEccccCCCCCccccCcCcccCCCCce--EEEc-cC------------------CcceeeEEechHHeEECcCCCCHH
Confidence            99999999999999999999999976543  2211 12                  489999999999999999999998


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKA-RGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~-~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      .++ +...+.++|. +.+..+++++++|+|+|+|++|++++|+|+. +|+..++++++++++.++++++|++.++++++ 
T Consensus       139 ~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~-  215 (339)
T PRK10083        139 YAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ-  215 (339)
T ss_pred             HHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc-
Confidence            876 4457778885 5678899999999999999999999999996 69977888999999999999999999998764 


Q ss_pred             CchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       .++.+.+..  .+ .+|++||++|++..+..++++++++|++
T Consensus       216 -~~~~~~~~~--~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~  255 (339)
T PRK10083        216 -EPLGEALEE--KGIKPTLIIDAACHPSILEEAVTLASPAARI  255 (339)
T ss_pred             -ccHHHHHhc--CCCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence             556555543  23 5689999999877899999999999986

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.4e-36  Score=275.60  Aligned_cols=254  Identities=28%  Similarity=0.442  Sum_probs=222.7

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------------CCCcccCcceeEEEEEcCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------------IFPRIFGHEASGIVESVGP   80 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------------~~p~~~G~e~~G~V~~vG~   80 (291)
                      |||+++.++++ +++++.|.|++.+++|+||+.++++|+.|+.++.|..            .+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            68999998875 9999999999999999999999999999998887752            2467899999999999999


Q ss_pred             CCC--CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc-
Q 022819           81 GVT--EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-  157 (291)
Q Consensus        81 ~~~--~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  157 (291)
                      ++.  .|++||+|+..+..+|+.|..|..++.+.|+...  .+|+...                 ..|+|++|+.++.+ 
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~-----------------~~g~~~~~~~~~~~~  140 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHD--LYGFQNN-----------------VNGGMAEYMRFPKEA  140 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCcc--ceeeccC-----------------CCCcceeeEEccccc
Confidence            998  8999999999999999999999999999997643  3443100                 12599999999988 


Q ss_pred             ceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          158 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       158 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      .++++|+++++++++.+ ..+.++|+++ +..++.++++|+|.|+|.+|.+++++|+.+|+..++++++++++.++++++
T Consensus       141 ~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~  218 (350)
T cd08256         141 IVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKF  218 (350)
T ss_pred             ceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHc
Confidence            57899999999999988 7889999986 788899999999988899999999999999986788999999999999999


Q ss_pred             CCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          238 GVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |++.+++.+.  .++.+.+.+++.+ ++|++||++|+...+..++++++++|++
T Consensus       219 g~~~v~~~~~--~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~  270 (350)
T cd08256         219 GADVVLNPPE--VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRF  270 (350)
T ss_pred             CCcEEecCCC--cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence            9988888764  6777788888777 8999999999766789999999999886

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=3.6e-36  Score=273.75  Aligned_cols=251  Identities=25%  Similarity=0.448  Sum_probs=220.9

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++.+++.+++++++|.|++.++||+||+.++++|++|...+.|..   .+|.++|||++|+|+++|+++.+|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD   80 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence            6899999996679999999999999999999999999999999887753   4577999999999999999999999999


Q ss_pred             EEEeec-ccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           90 HVLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        90 rV~~~~-~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      +|++.+ ...|+.|..|..+.++.|....+  .|+. .+                  |+|++|+.++.+.++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~--~~~~-~~------------------g~~a~~~~v~~~~~~~lp~~~~~  139 (333)
T cd08296          81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV--TGVT-RD------------------GGYAEYMLAPAEALARIPDDLDA  139 (333)
T ss_pred             EEEeccccCCCCCChhhhCcCcccCCCCCc--cCcc-cC------------------CcceeEEEEchhheEeCCCCCCH
Confidence            998754 46799999999999999998764  2221 12                  48999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      ++++.+++.+.++|+++.. ..+.++++|||+|+|++|++++++|+.+|+ +++++++++++++.++++|++.++++.. 
T Consensus       140 ~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~-  216 (333)
T cd08296         140 AEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK-  216 (333)
T ss_pred             HHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC-
Confidence            9999999999999998754 489999999999999999999999999999 8999999999999999999988888765 


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       .++.+.++++  +++|+++|++|....+..++++++++|++
T Consensus       217 -~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~  255 (333)
T cd08296         217 -EDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPRGKL  255 (333)
T ss_pred             -ccHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccCCEE
Confidence             5566666665  47999999998667899999999999876

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=3.6e-36  Score=274.59  Aligned_cols=256  Identities=32%  Similarity=0.453  Sum_probs=224.5

Q ss_pred             eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      ||++++.+++. +++.++|.|.| .++||+||+.++++|++|+..+.+.+   .+|.++|+|++|+|+++|+++.+|++|
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG   79 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence            57999998875 89999999999 89999999999999999998887754   457899999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc--ceEECCCCC
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIA  166 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~  166 (291)
                      |+|+..+..+|+.|.+|.+++.++|+..........                  ...|+|++|+.++.+  .++++|+++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~v~~~~~~~~~lP~~~  141 (347)
T cd05278          80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGN------------------RIDGGQAEYVRVPYADMNLAKIPDGL  141 (347)
T ss_pred             CEEEecCCCCCCCChhHhCcCcccCcCCCccccccc------------------CCCCeeeEEEEecchhCeEEECCCCC
Confidence            999999999999999999999999987653211100                  012499999999987  899999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++++.+++.+.|||+++ ...+++++++|||.|+|.+|.+++|+|+.+|...++++++++++.++++++|++.+++++
T Consensus       142 ~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  220 (347)
T cd05278         142 PDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPK  220 (347)
T ss_pred             CHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCC
Confidence            9999999999999999986 678899999999988899999999999999965788888889999999999999898886


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .  .++.+.+++.+.+ ++|++||++++...+..++++|+++|++
T Consensus       221 ~--~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~  263 (347)
T cd05278         221 N--GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTI  263 (347)
T ss_pred             c--chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEE
Confidence            5  5677888887775 8999999999866889999999999976

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=5.3e-36  Score=272.85  Aligned_cols=253  Identities=30%  Similarity=0.455  Sum_probs=226.2

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.++++++++++.+.|.+++++|+||+.++++|++|+..+.|.+      .+|.++|+|++|+|+++|+++..|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            5899999887789999999999999999999999999999998887654      3468899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+..+...|+.|..|..+..++|++..+.  |.. .+                  |+|++|+.++.+.++++|+++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------------g~~~~~~~v~~~~~~~~P~~l  139 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARFP--GIG-TD------------------GGFAEYLLVPSRRLVKLPRGL  139 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCccc--Ccc-CC------------------CcceeeEEecHHHeEECCCCC
Confidence            999999999889999999999999999988763  321 22                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhh-cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNV-ADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++++++.+++.+.|||+++.+. ..+.++++|||+|+|++|++++|+|+.+| . +|+++++++++.+.++++|++++++
T Consensus       140 s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~~  218 (340)
T cd05284         140 DPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVLN  218 (340)
T ss_pred             CHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEEc
Confidence            9999999999999999988776 46888999999999889999999999999 6 8898989999999999999998888


Q ss_pred             CCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.  . +.+.+++++.+ ++|+++|++|+...+..++++++++|++
T Consensus       219 ~~~--~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~  262 (340)
T cd05284         219 ASD--D-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRY  262 (340)
T ss_pred             CCc--c-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEE
Confidence            865  4 77788888776 8999999999877889999999999876

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=2.4e-35  Score=269.32  Aligned_cols=255  Identities=29%  Similarity=0.430  Sum_probs=224.9

Q ss_pred             eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |||+++.+++. ++++++|.|+| .++||+||++++++|+.|+.++.|.+   .+|.++|||++|+|+++|+++..+++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   79 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG   79 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence            68999998875 99999999986 79999999999999999999988865   337889999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc--ceEECCCCC
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIA  166 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~  166 (291)
                      |+|++.+..+|+.|.+|..++++.|....+.. |.. .+                  |+|++|+.++.+  .++++|+++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~------------------g~~~~~~~v~~~~~~~~~lp~~~  139 (345)
T cd08286          80 DRVLISCISSCGTCGYCRKGLYSHCESGGWIL-GNL-ID------------------GTQAEYVRIPHADNSLYKLPEGV  139 (345)
T ss_pred             CEEEECCcCCCCCChHHHCcCcccCCCccccc-ccc-cC------------------CeeeeEEEcccccCceEECCCCC
Confidence            99999998899999999999999888775521 221 12                  489999999987  899999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++.+++.+.+.+.+||..+....++.++++++|+|+|.+|.+++|+|+.+|+.+++++++++++.++++++|++.+++++
T Consensus       140 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~  219 (345)
T cd08286         140 DEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSA  219 (345)
T ss_pred             CHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccc
Confidence            99999999999999998877888899999999998899999999999999944889999999999999999999899886


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .++...+.+++.+ ++|++||++|....+..+++.++++|++
T Consensus       220 ~--~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~  262 (345)
T cd08286         220 K--GDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHI  262 (345)
T ss_pred             c--ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEE
Confidence            5  5677777777766 8999999999877889999999999876

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1.8e-35  Score=275.07  Aligned_cols=260  Identities=21%  Similarity=0.230  Sum_probs=221.2

Q ss_pred             cceeeeEEEEec--CCC---CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-------------CCCcccCcc
Q 022819            9 QVITCKAAVAWG--AGQ---PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-------------IFPRIFGHE   70 (291)
Q Consensus         9 ~~~~~~a~~~~~--~~~---~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-------------~~p~~~G~e   70 (291)
                      .+.+|+|+++..  .+.   .++++++|.|.++++||+||+.+++||.+|+..+.+..             ..+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            567899999863  222   37899999999999999999999999999988876641             122488999


Q ss_pred             eeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceee
Q 022819           71 ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE  150 (291)
Q Consensus        71 ~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~  150 (291)
                      ++|+|+++|++++.|++||+|++.+...|+.|..|.++..++|+...+  +|+...+                  |+|++
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~--~g~~~~~------------------g~~a~  148 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI--WGYETNY------------------GSFAQ  148 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc--ccccCCC------------------Cccee
Confidence            999999999999999999999999999999999999999999986543  4432122                  49999


Q ss_pred             EEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhh--cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          151 YTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV--ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       151 ~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      |+.++...++++|+++++++++.+.+.+.+||+++...  .+++++++|+|+|+ |++|++++++|+.+|+ .+++++++
T Consensus       149 y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s  227 (393)
T cd08246         149 FALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSS  227 (393)
T ss_pred             EEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999999999999999999999999987655  67899999999997 9999999999999999 77788889


Q ss_pred             hhhHHHHHHcCCceEeCCCCCC--------------------chHHHHHHHHhcC--CccEEEEccCChHHHHHHHHhhc
Q 022819          228 PEKCEKAKAFGVTEFLNPNDNN--------------------EPVQQVIKRITDG--GADYSFECIGDTGMITTALQSCC  285 (291)
Q Consensus       228 ~~~~~~a~~~g~~~~i~~~~~~--------------------~~~~~~~~~~~~g--~~d~vld~~g~~~~~~~~~~~l~  285 (291)
                      +++++.++++|++.++++++.+                    ..+.+.+.+++++  ++|++||++|+ ..+..++++++
T Consensus       228 ~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~  306 (393)
T cd08246         228 EEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCD  306 (393)
T ss_pred             HHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhc
Confidence            9999999999999988874311                    1356677787776  69999999997 67889999999


Q ss_pred             cCccc
Q 022819          286 DVRSI  290 (291)
Q Consensus       286 ~~G~i  290 (291)
                      ++|++
T Consensus       307 ~~G~~  311 (393)
T cd08246         307 RGGMV  311 (393)
T ss_pred             cCCEE
Confidence            99975

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=4.9e-35  Score=269.49  Aligned_cols=258  Identities=28%  Similarity=0.437  Sum_probs=213.8

Q ss_pred             ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc------CCCCcccCcceeEEEEEcCCCCC
Q 022819           10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ------AIFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~------~~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      ...+++.++.++. .+++++.+.|.+.++||+||++++++|++|+.++.+.      ..+|.++|||++|+|+++|+++.
T Consensus        15 ~~~~~~~~~~~~~-~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   93 (364)
T PLN02702         15 EEENMAAWLVGVN-TLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVK   93 (364)
T ss_pred             ccccceEEEecCC-ceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCC
Confidence            3445555566664 4899999999999999999999999999999988762      13577899999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      .|++||+|+..+..+|+.|..|..+.++.|+...+  ++....                  .|+|++|+.++.+.++++|
T Consensus        94 ~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~--~~~~~~------------------~g~~~~y~~v~~~~~~~~P  153 (364)
T PLN02702         94 HLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF--FATPPV------------------HGSLANQVVHPADLCFKLP  153 (364)
T ss_pred             CCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc--cCCCCC------------------CCcccceEEcchHHeEECC
Confidence            99999999999999999999999999999986432  111001                  2499999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      ++++++++++.. .+.++|+++ +..++.++++++|+|+|++|++++|+|+.+|+..++++++++++.++++++|++.++
T Consensus       154 ~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~  231 (364)
T PLN02702        154 ENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIV  231 (364)
T ss_pred             CCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence            999999988632 445577765 778899999999999899999999999999997788898899999999999999887


Q ss_pred             CCCCCCchHHHHHHHH---hcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNNEPVQQVIKRI---TDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~---~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++....++.+.+.++   +.+++|++||++|+...+..++++++++|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~  281 (364)
T PLN02702        232 LVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKV  281 (364)
T ss_pred             ecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            6543234566666554   2348999999999777899999999999986

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=4.1e-35  Score=272.20  Aligned_cols=271  Identities=29%  Similarity=0.420  Sum_probs=223.1

Q ss_pred             eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |||+++.++. .++++++|.|.| ++++|+||+.++++|++|...+.|.+   .+|.++|||++|+|+++|+++.+|++|
T Consensus         1 m~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   79 (386)
T cd08283           1 MKALVWHGKG-DVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG   79 (386)
T ss_pred             CeeEEEecCC-CceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence            6899998875 499999999998 49999999999999999999988865   357899999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccc--cccccCCcccceeccCCccccccCccceeeEEEeecc--ceEECCC
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLER--RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSS  164 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~--~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~  164 (291)
                      |+|+..+...|+.|.+|..+.++.|+++....  .+.+...   ..++.+..-...+..|+|++|+.++.+  .++++|+
T Consensus        80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~  156 (386)
T cd08283          80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHA---GAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPD  156 (386)
T ss_pred             CEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccc---cccccccccccCCCCCeeEEEEEcccccCeEEECCC
Confidence            99999988899999999999999998765321  1100000   000000000000123699999999988  8999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++++++++.++..+.+||+++ +..++.++++|+|+|+|++|.+++++|+.+|+.+++++++++++.+.+++++...+++
T Consensus       157 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~  235 (386)
T cd08283         157 DLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETIN  235 (386)
T ss_pred             CCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEc
Confidence            999999999999999999987 8889999999999988999999999999999856999999999999999985446777


Q ss_pred             CCCCCc-hHHHHHHHHhcC-CccEEEEccCC---------------------hHHHHHHHHhhccCccc
Q 022819          245 PNDNNE-PVQQVIKRITDG-GADYSFECIGD---------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~-~~~~~~~~~~~g-~~d~vld~~g~---------------------~~~~~~~~~~l~~~G~i  290 (291)
                      +..  . ++...+.+++.+ ++|++||++|+                     ...++.++++++++|++
T Consensus       236 ~~~--~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~i  302 (386)
T cd08283         236 FEE--VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTV  302 (386)
T ss_pred             CCc--chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEE
Confidence            654  4 477888888877 89999999975                     24688899999999976

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=4.1e-35  Score=268.35  Aligned_cols=255  Identities=26%  Similarity=0.401  Sum_probs=224.5

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---------------CCCcccCcceeEEEEE
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---------------IFPRIFGHEASGIVES   77 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---------------~~p~~~G~e~~G~V~~   77 (291)
                      |||+++..++.+++++++|.|++.++||+||+.++++|++|+..+.+.+               .+|.++|+|++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            6899999888889999999999999999999999999999998876642               2357899999999999


Q ss_pred             cCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc
Q 022819           78 VGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG  157 (291)
Q Consensus        78 vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  157 (291)
                      +|+++.++++||+|+.++...|+.|..|.++.+++|....+.  |.. .                  .|+|++|+.++.+
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~------------------~g~~~~~~~~~~~  139 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRAL--GIF-Q------------------DGGYAEYVIVPHS  139 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCce--eee-c------------------cCcceeeEEecHH
Confidence            999999999999999999999999999999999999775432  211 1                  2489999999999


Q ss_pred             ceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          158 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       158 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      .++++|+++++.+++.+.+.+.+||+++.....+.++++|+|+|+|++|++++|+|+.+|+++|+++++++++.+.++++
T Consensus       140 ~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~  219 (350)
T cd08240         140 RYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA  219 (350)
T ss_pred             HeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh
Confidence            99999999999999999999999999887777777899999998899999999999999997888998999999999999


Q ss_pred             CCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |++.+++.++  .++.+.+.+...+++|++||++|.+..+..++++|+++|++
T Consensus       220 g~~~~~~~~~--~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~  270 (350)
T cd08240         220 GADVVVNGSD--PDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKL  270 (350)
T ss_pred             CCcEEecCCC--ccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeE
Confidence            9988887764  56666777766558999999999777899999999999876

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=5.6e-35  Score=266.59  Aligned_cols=252  Identities=27%  Similarity=0.377  Sum_probs=217.0

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      ||++++.++++++++.+.|.|.|+++||+||++++++|++|+.++.+..      .+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            5899999988789999999999999999999999999999998765421      3577899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+..+..+|..|.+|..+.+++|+...+  .|+. .+                  |+|++|+.++.++++++|+++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~iP~~l  139 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG--VGVN-RP------------------GAFAEYLVIPAFNVWKIPDDI  139 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce--eeec-CC------------------CcceeeEEechHHeEECcCCC
Confidence            99999999999999999999999999987543  2221 12                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++++.+ ..+.++++++..  ...++++|+|+|+|++|.+++|+|+.+|+++++++++++++.+.++++|++.+++++
T Consensus       140 ~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~  216 (341)
T PRK05396        140 PDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVA  216 (341)
T ss_pred             CHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCc
Confidence            99888755 455666655432  345899999998899999999999999986688888899999999999999999886


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .++.+.+.+++.+ ++|++|||+|+...+..++++++++|++
T Consensus       217 ~--~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  259 (341)
T PRK05396        217 K--EDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRI  259 (341)
T ss_pred             c--ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            5  6677888888766 8999999999877889999999999875

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=9.4e-35  Score=265.39  Aligned_cols=255  Identities=30%  Similarity=0.498  Sum_probs=225.4

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      ||||++.+++.++++++.|.|.+.+++|+||+.++++|+.|+..+.|..   .+|.++|+|++|+|+++|+++..|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd   80 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD   80 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence            6999999888779999999999999999999999999999998887765   3478899999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc--ceEECCCCCC
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAP  167 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~  167 (291)
                      +|+..+...|+.|.+|..+..+.|+...+  .|+. .+                  |+|++|+.++..  .++++|++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~~iP~~~~  139 (345)
T cd08260          81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ--PGFT-HP------------------GSFAEYVAVPRADVNLVRLPDDVD  139 (345)
T ss_pred             EEEECCCCCCCCCccccCcCcccCCCCcc--cccC-CC------------------CcceeEEEcccccCceEECCCCCC
Confidence            99987778899999999999999998643  2221 12                  489999999874  8999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      +++++.++..+.+||+++.+..++.++++++|+|+|++|++++++|+.+|+ +++++.+++++.+.++++|++.+++.+.
T Consensus       140 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~  218 (345)
T cd08260         140 FVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE  218 (345)
T ss_pred             HHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc
Confidence            999999998999999998788889999999999999999999999999999 8999999999999999999998988753


Q ss_pred             CCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       ..++...+..+..+++|++||++|+...+..++++++++|++
T Consensus       219 -~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~  260 (345)
T cd08260         219 -VEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRH  260 (345)
T ss_pred             -chhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEE
Confidence             246666777776558999999999767888999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=1.1e-34  Score=268.25  Aligned_cols=262  Identities=27%  Similarity=0.417  Sum_probs=218.5

Q ss_pred             eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      ||++++.+++ +++++++|+|.+ +++||+||++++++|++|++.+.|..  .+|.++|||++|+|+++|+++..|++||
T Consensus         1 m~~~~~~~~~-~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (375)
T cd08282           1 MKAVVYGGPG-NVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEPGLVLGHEAMGEVEEVGSAVESLKVGD   79 (375)
T ss_pred             CceEEEecCC-ceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCCCCCceeccccEEEEEEeCCCCCcCCCCC
Confidence            5789998876 599999999996 79999999999999999999988765  3588999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc--ceEECCCCCC
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAP  167 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~  167 (291)
                      +|+..+..+|+.|..|.++++++|....+...|..  .|...       ..+  ..|+|++|+.++.+  .++++|++++
T Consensus        80 ~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~--~~g~~a~y~~v~~~~~~~~~lP~~~~  148 (375)
T cd08282          80 RVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGA--YGYVD-------MGP--YGGGQAEYLRVPYADFNLLKLPDRDG  148 (375)
T ss_pred             EEEEeCCCCCCCCHHHHCcCcccCCCCCccccccc--ccccc-------cCC--CCCeeeeEEEeecccCcEEECCCCCC
Confidence            99999999999999999999999986432211100  00000       000  12589999999976  8999999999


Q ss_pred             hh---hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          168 LE---KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       168 ~~---~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++   +++.+...+.+||+++ +..++.++++|+|+|+|++|++++|+|+++|+.+++++++++++.++++++|+ ..++
T Consensus       149 ~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~~v~  226 (375)
T cd08282         149 AKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-IPID  226 (375)
T ss_pred             hhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-eEec
Confidence            98   5677777899999987 78889999999999889999999999999998678889999999999999998 4566


Q ss_pred             CCCCCchHHHHHHHHhcCCccEEEEccCChH-----------HHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDGGADYSFECIGDTG-----------MITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~-----------~~~~~~~~l~~~G~i  290 (291)
                      +++  .++.+.+.+++.+++|++|||+|+..           .+..++++++++|++
T Consensus       227 ~~~--~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  281 (375)
T cd08282         227 FSD--GDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGI  281 (375)
T ss_pred             cCc--ccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEE
Confidence            654  66777777776668999999999752           488999999999875

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=9.1e-35  Score=271.87  Aligned_cols=246  Identities=20%  Similarity=0.284  Sum_probs=200.7

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhh-cccC---------CCCcccCcceeEEEEEcCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW-ETQA---------IFPRIFGHEASGIVESVGP   80 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~-~g~~---------~~p~~~G~e~~G~V~~vG~   80 (291)
                      |+|+++++.++++ ++++++|.|.|+++||+|||.+++||++|++.+ .|..         .+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            5689999999885 999999999999999999999999999999876 4431         3678999999999999999


Q ss_pred             CCC-CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc--
Q 022819           81 GVT-EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--  157 (291)
Q Consensus        81 ~~~-~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--  157 (291)
                      ++. .|++||||++.+...|+.|..|. +            +|+. .+                  |+|++|+.++.+  
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~------------~g~~-~~------------------G~~aey~~v~~~~~  127 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCP-G------------YSYT-YP------------------GGLATYHIIPNEVM  127 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCC-C------------cccc-CC------------------CcceEEEEecHHhc
Confidence            998 59999999999888888887762 1            1211 12                  499999999987  


Q ss_pred             --ceEECCCCCChhhhhhh-hhhh-hhhHhH--------HHhhcCCCCCCEEEEEc-CChHHHHHHHHHHHcC--CCeEE
Q 022819          158 --CAVKVSSIAPLEKICLL-SCGL-SAGLGA--------AWNVADISKGSTVVIFG-LGTVGLSVAQGAKARG--ASRII  222 (291)
Q Consensus       158 --~~~~ip~~~~~~~aa~~-~~~~-~ta~~~--------l~~~~~~~~~~~vlV~G-~g~~G~~~i~~a~~~g--~~~vi  222 (291)
                        .++++|+++++++++++ +... .+++.+        +.+..+++++++|+|+| +|++|++++|+|+.+|  +.+|+
T Consensus       128 ~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi  207 (410)
T cd08238         128 EQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLV  207 (410)
T ss_pred             cCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEE
Confidence              68999999999998865 2111 123322        22557889999999997 4999999999999975  45799


Q ss_pred             EEcCChhhHHHHHHc--------CCc-eEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          223 GVDTNPEKCEKAKAF--------GVT-EFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       223 ~~~~~~~~~~~a~~~--------g~~-~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++++++|++.++++        |++ .++++++ ..++.+.+++++++ ++|++||++|.+..+..++++++++|++
T Consensus       208 ~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~-~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~  284 (410)
T cd08238         208 VTDVNDERLARAQRLFPPEAASRGIELLYVNPAT-IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCL  284 (410)
T ss_pred             EEcCCHHHHHHHHHhccccccccCceEEEECCCc-cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeE
Confidence            999999999999997        666 4676642 14577788888887 8999999999888999999999988864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.4e-34  Score=266.62  Aligned_cols=275  Identities=35%  Similarity=0.480  Sum_probs=228.6

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCC---CCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTE---FNE   87 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~---~~~   87 (291)
                      |+||++.+++.++++++.|+|.++++||+||+.++++|++|+..+.+.+  .+|.++|||++|+|+++|+++.+   |++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~~~~~~~~~~   80 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPFPPPFVLGHEISGEVVEVGPNVENPYGLSV   80 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCCCCCcccccccceEEEEeCCCCCCCCcCCC
Confidence            6899999987779999999999999999999999999999999887755  45779999999999999999988   999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccc-cCccceeeEEEeeccceEECCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHY-CAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ||+|+..+..+|+.|.+|..+.+++|++..+. ..+....+|-+.+..... .+.+ ...|+|++|+.++.+.++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~P~~  159 (367)
T cd08263          81 GDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDG-GPVYMYSMGGLAEYAVVPATALAPLPES  159 (367)
T ss_pred             CCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCC-CccccccCCcceeEEEechhhEEECCCC
Confidence            99999988889999999999999999987521 101000111000000000 0000 01258999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++.+++.+++.+.|||.++.....+.++++|+|+|+|++|.+++++|+.+|+..++++++++++.+.++++|++.+++.
T Consensus       160 is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~  239 (367)
T cd08263         160 LDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNA  239 (367)
T ss_pred             CCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecC
Confidence            99999999999999999998888888999999999889999999999999999559999889999999999999989988


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.  .++...+.+.+.+ ++|++||++++...+..++++++++|++
T Consensus       240 ~~--~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~  283 (367)
T cd08263         240 AK--EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRA  283 (367)
T ss_pred             Cc--ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEE
Confidence            65  6777778877765 8999999999865789999999999886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=2.1e-34  Score=268.50  Aligned_cols=260  Identities=23%  Similarity=0.300  Sum_probs=220.4

Q ss_pred             cceeeeEEEEec--CCC---CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-------------CCC-cccCc
Q 022819            9 QVITCKAAVAWG--AGQ---PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-------------IFP-RIFGH   69 (291)
Q Consensus         9 ~~~~~~a~~~~~--~~~---~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-------------~~p-~~~G~   69 (291)
                      ++.+||||++..  .++   .+++.++|.|.++++||+||++++++|.+|.....+..             ..| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            567899999954  443   38999999999999999999999999998876654421             123 37999


Q ss_pred             ceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCcccee
Q 022819           70 EASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFS  149 (291)
Q Consensus        70 e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~  149 (291)
                      |++|+|+++|+++..|++||+|++.....|++|.+|..+++++|+...  .+|+...+                  |+|+
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~------------------g~~a  143 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQR--IWGYETNF------------------GSFA  143 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccc--cccccCCC------------------ccce
Confidence            999999999999999999999999999999999999999999997653  24432222                  4999


Q ss_pred             eEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHh--hcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          150 EYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN--VADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       150 ~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      +|+.++.+.++++|+++++++++.+.+.+.+||.++..  ..++.++++++|+|+ |++|++++++|+.+|+ +++++++
T Consensus       144 e~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~  222 (398)
T TIGR01751       144 EFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVS  222 (398)
T ss_pred             EEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcC
Confidence            99999999999999999999999999999999998755  477889999999997 9999999999999999 7788888


Q ss_pred             ChhhHHHHHHcCCceEeCCCCCC--------------------chHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhc
Q 022819          227 NPEKCEKAKAFGVTEFLNPNDNN--------------------EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCC  285 (291)
Q Consensus       227 ~~~~~~~a~~~g~~~~i~~~~~~--------------------~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~  285 (291)
                      ++++++.++++|++.++|+++.+                    ..+.+.+.+++.+ ++|++|||+|. ..+..++++++
T Consensus       223 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~l~  301 (398)
T TIGR01751       223 SPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFVCR  301 (398)
T ss_pred             CHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHhhc
Confidence            89999999999999999875410                    1355667777776 89999999997 67889999999


Q ss_pred             cCccc
Q 022819          286 DVRSI  290 (291)
Q Consensus       286 ~~G~i  290 (291)
                      ++|++
T Consensus       302 ~~G~~  306 (398)
T TIGR01751       302 RGGMV  306 (398)
T ss_pred             cCCEE
Confidence            99875

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.5e-34  Score=260.81  Aligned_cols=250  Identities=34%  Similarity=0.547  Sum_probs=219.2

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++.+++. +++.++|.|.+.++||+|||.++++|+.|+..+.+..   .+|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD   79 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence            58999988764 9999999999999999999999999999998887754   3477899999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      +|+..+..+|+.|..|+.++.++|.....  .++. .                  .|+|++|+.++.+ ++++|++++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~v~v~~~-~~~~p~~~~~~  137 (337)
T cd08261          80 RVVVDPYISCGECYACRKGRPNCCENLQV--LGVH-R------------------DGGFAEYIVVPAD-ALLVPEGLSLD  137 (337)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCe--eeec-C------------------CCcceeEEEechh-eEECCCCCCHH
Confidence            99998888999999999999999964432  1111 1                  2489999999999 99999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      +++++ ..+.++++++ +..++.++++|||+|+|.+|.+++|+|+.+|+ +++++.+++++.++++++|++++++++.  
T Consensus       138 ~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~--  212 (337)
T cd08261         138 QAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD--  212 (337)
T ss_pred             Hhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc--
Confidence            99887 4677888876 78889999999999889999999999999999 8999988999999999999999998875  


Q ss_pred             chHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++.+.+.+++.+ ++|++||++|+...+..+++.++++|++
T Consensus       213 ~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~  254 (337)
T cd08261         213 EDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRV  254 (337)
T ss_pred             cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            5677888888776 8999999998877889999999999876

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=3.9e-34  Score=260.98  Aligned_cols=256  Identities=30%  Similarity=0.435  Sum_probs=219.1

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCC-CCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQ-PEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~-~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |+|+++..+. .++++++|+|.|. ++||+||+.++++|+.|...+.|.+  .+|.++|+|++|+|+++|+++..+++||
T Consensus         1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (344)
T cd08284           1 MKAVVFKGPG-DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTPGFVLGHEFVGEVVEVGPEVRTLKVGD   79 (344)
T ss_pred             CeeEEEecCC-CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCCCCCcccccceEEEEEeeCCCccccCCCC
Confidence            5789998774 5999999999985 9999999999999999998887754  3478899999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc--ceEECCCCCC
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAP  167 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~  167 (291)
                      +|+..+...|+.|.+|.+++.+.|+....  +|..   +            .....|+|++|+.++.+  .++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~------------~~~~~g~~~~~~~v~~~~~~~~~~p~~l~  142 (344)
T cd08284          80 RVVSPFTIACGECFYCRRGQSGRCAKGGL--FGYA---G------------SPNLDGAQAEYVRVPFADGTLLKLPDGLS  142 (344)
T ss_pred             EEEEcccCCCCCChHHhCcCcccCCCCcc--cccc---c------------cCCCCCceeEEEEcccccCceEECCCCCC
Confidence            99999888999999999999999987643  2210   0            00012589999999865  9999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      +++++.+++.+.|||+++. ..++.++++|+|+|+|.+|++++++|+.+|+.+++++++++++.++++++|+. .++.+.
T Consensus       143 ~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~  220 (344)
T cd08284         143 DEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFED  220 (344)
T ss_pred             HHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecCC
Confidence            9999999999999999874 47888999999998899999999999999975789998889999999999975 455543


Q ss_pred             CCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        .++...+.+++.+ ++|++||++|+...+..++++++++|++
T Consensus       221 --~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~  262 (344)
T cd08284         221 --AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVI  262 (344)
T ss_pred             --cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEE
Confidence              5677778887776 8999999999877899999999999876

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=5.1e-34  Score=260.12  Aligned_cols=252  Identities=32%  Similarity=0.469  Sum_probs=221.9

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++.+++ .+.+++.+.|.+.+++|+||++++++|+.|+..+.+..   ..|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd   79 (343)
T cd08235           1 MKAAVLHGPN-DVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD   79 (343)
T ss_pred             CeEEEEecCC-ceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence            5899998876 49999999999999999999999999999999887764   4577999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccc-----eEECCC
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC-----AVKVSS  164 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ip~  164 (291)
                      +|+..+..+|++|+.|..++.++|+...+.  |.. .+                  |+|++|+.++.+.     ++++|+
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------------g~~~~~v~v~~~~~~~~~~~~lP~  138 (343)
T cd08235          80 RVFVAPHVPCGECHYCLRGNENMCPNYKKF--GNL-YD------------------GGFAEYVRVPAWAVKRGGVLKLPD  138 (343)
T ss_pred             EEEEccCCCCCCChHHHCcCcccCCCccee--ccC-CC------------------CcceeeEEecccccccccEEECCC
Confidence            999999999999999999999999887652  221 12                  4999999999998     999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++++.+++.+ ..+.+||+++. ..++.++++|+|+|+|.+|.+++|+|+.+|++.++++.+++++.+.++++|.+.+++
T Consensus       139 ~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~  216 (343)
T cd08235         139 NVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTID  216 (343)
T ss_pred             CCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEec
Confidence            9999999877 68889999874 458999999999988999999999999999943899989999999999999988888


Q ss_pred             CCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++  .++.+.+.+.+.+ ++|++||+++++..+..++++++++|++
T Consensus       217 ~~~--~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~  261 (343)
T cd08235         217 AAE--EDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRI  261 (343)
T ss_pred             CCc--cCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence            875  6777778887776 8999999999877889999999999875

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=5.8e-34  Score=258.61  Aligned_cols=253  Identities=32%  Similarity=0.489  Sum_probs=223.0

Q ss_pred             eeEEEEecCCCC-eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           13 CKAAVAWGAGQP-LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        13 ~~a~~~~~~~~~-~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      ||++++..++++ +.+++.|.|.+.+++|+||+.++++|+.|...+.+..    ..|.++|+|++|+|+++|+++..|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            689999999888 6888889999999999999999999999998887754    34778999999999999999999999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      ||+|+.++..+|+.|.+|..++.+.|......  |.. .+                  |+|++|+.++.+.++++|++++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~  139 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGMP--GLG-ID------------------GGFAEYIVVPARALVPVPDGVP  139 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCcc--ccc-cC------------------CcceeeEEechHHeEECCCCCC
Confidence            99999999999999999999999999665432  211 11                  4899999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      +.+++.++..+.+||+++....++.++++|||.|+|.+|.+++++|+.+|+ +|+++++++++.+.++++|++.+++.++
T Consensus       140 ~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~  218 (338)
T cd08254         140 FAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD  218 (338)
T ss_pred             HHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCC
Confidence            999999999999999998888889999999999889999999999999999 8999999999999999999988887764


Q ss_pred             CCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        ......+ +.+.+ ++|+++|++|....+..++++|+++|++
T Consensus       219 --~~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~  259 (338)
T cd08254         219 --DSPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRI  259 (338)
T ss_pred             --cCHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEE
Confidence              4555555 44444 8999999999878899999999999986

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-34  Score=260.95  Aligned_cols=247  Identities=30%  Similarity=0.423  Sum_probs=216.1

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++.+++++++++++|.|.+.++|++||++++++|+.|+..+.|..   .+|.++|+|++|+|+++|+++..+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD   80 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence            6899999999889999999999999999999999999999998887754   4567899999999999999998899999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      +|++....+|+.|++|..+++++|+...+  +|.. .+                  |+|++|+.++.+.++++|+++++.
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~~  139 (334)
T PRK13771         81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG--YGEE-LD------------------GFFAEYAKVKVTSLVKVPPNVSDE  139 (334)
T ss_pred             EEEECCCCCCcCChhhcCCCcccCccccc--cccc-cC------------------ceeeeeeecchhceEECCCCCCHH
Confidence            99999888999999999999999988654  2221 12                  489999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      +++.+.+.+.++|+++.+. .+.++++++|+|+ |.+|++++++|+.+|+ +++++++++++.+.++++ ++.+++.+  
T Consensus       140 ~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~--  214 (334)
T PRK13771        140 GAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS--  214 (334)
T ss_pred             HhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch--
Confidence            9999999999999987665 8899999999987 9999999999999999 899998999999999888 66666543  


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        ++.+.++++  +++|++||++|+ ..+..+++.++++|++
T Consensus       215 --~~~~~v~~~--~~~d~~ld~~g~-~~~~~~~~~l~~~G~~  251 (334)
T PRK13771        215 --KFSEEVKKI--GGADIVIETVGT-PTLEESLRSLNMGGKI  251 (334)
T ss_pred             --hHHHHHHhc--CCCcEEEEcCCh-HHHHHHHHHHhcCCEE
Confidence              344555554  379999999998 4678999999999975

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=9.4e-34  Score=258.67  Aligned_cols=253  Identities=32%  Similarity=0.473  Sum_probs=216.2

Q ss_pred             eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      ||++++.+++. +++.+.|.|.| +++||+||+.++++|++|+..+.|..  ..|.++|||++|+|+++|+++.++++||
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPTRAPAPIGHEFVGVVEEVGSEVTSVKPGD   79 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCCCCCcccccceEEEEEEeCCCCCccCCCC
Confidence            68999998765 99999999996 89999999999999999998887764  3478999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc--ceEECCCCCC
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAP  167 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~  167 (291)
                      +|+.....+|+.|..|..++.+.|....+  +|.. .+                  |+|++|+.++.+  .++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~~lP~~l~  138 (345)
T cd08287          80 FVIAPFAISDGTCPFCRAGFTTSCVHGGF--WGAF-VD------------------GGQGEYVRVPLADGTLVKVPGSPS  138 (345)
T ss_pred             EEEeccccCCCCChhhhCcCcccCCCCCc--ccCC-CC------------------CceEEEEEcchhhCceEECCCCCC
Confidence            99886677899999999999999987543  3311 22                  489999999875  9999999998


Q ss_pred             hhhhh-----hhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          168 LEKIC-----LLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       168 ~~~aa-----~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      ++.+.     .+...+.+||+++ ...++.++++++|.|+|++|++++|+|+.+|++.++++++++++.+.++++|++.+
T Consensus       139 ~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v  217 (345)
T cd08287         139 DDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDI  217 (345)
T ss_pred             hhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceE
Confidence            72221     1224678888876 57788999999999889999999999999999669999989989999999999999


Q ss_pred             eCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++.  .++.+.+.+++.+ ++|++||++|++..+..+++.++++|++
T Consensus       218 ~~~~~--~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~  264 (345)
T cd08287         218 VAERG--EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRV  264 (345)
T ss_pred             ecCCc--ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEE
Confidence            98875  6677788888776 8999999999878899999999999876

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1e-33  Score=262.70  Aligned_cols=245  Identities=32%  Similarity=0.509  Sum_probs=210.7

Q ss_pred             CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc----------CCCCcccCcceeEEEEEcCCCCCCCCCCCEEEe
Q 022819           24 PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ----------AIFPRIFGHEASGIVESVGPGVTEFNEGEHVLT   93 (291)
Q Consensus        24 ~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~----------~~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~   93 (291)
                      +++++++|.|+++++||+||+.++++|++|+..+.+.          ..+|.++|||++|+|+++|+++..|++||+|++
T Consensus        38 ~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~  117 (384)
T cd08265          38 ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA  117 (384)
T ss_pred             CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence            4999999999999999999999999999998877521          134689999999999999999999999999999


Q ss_pred             ecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC-------C
Q 022819           94 VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI-------A  166 (291)
Q Consensus        94 ~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~-------~  166 (291)
                      .+..+|+.|..|..+.+++|.....  .|+. .+                  |+|++|+.++...++++|++       +
T Consensus       118 ~~~~~~~~~~~c~~~~~~~~~~~~~--~g~~-~~------------------g~~~~~v~v~~~~~~~lP~~~~~~~~~~  176 (384)
T cd08265         118 EEMMWCGMCRACRSGSPNHCKNLKE--LGFS-AD------------------GAFAEYIAVNARYAWEINELREIYSEDK  176 (384)
T ss_pred             CCCCCCCCChhhhCcCcccCCCcce--eeec-CC------------------CcceeeEEechHHeEECCccccccccCC
Confidence            9999999999999999999987553  3321 12                  48999999999999999986       3


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhh-cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNV-ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++ ++++...+.+||+++... .+++++++|+|+|+|++|++++|+|+.+|+.+|+++++++++.++++++|++.++++
T Consensus       177 ~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~  255 (384)
T cd08265         177 AFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNP  255 (384)
T ss_pred             CHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcc
Confidence            445 556666889999988666 689999999999889999999999999998779999989999999999999988887


Q ss_pred             CCC-CchHHHHHHHHhcC-CccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          246 NDN-NEPVQQVIKRITDG-GADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~-~~~~~~~~~~~~~g-~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                      ++. ..++...+.+++.+ ++|+|+|++|.+ ..+..++++|+++|++
T Consensus       256 ~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~  303 (384)
T cd08265         256 TKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKI  303 (384)
T ss_pred             cccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEE
Confidence            642 23677888888877 899999999973 4788999999999986

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=1.2e-33  Score=257.19  Aligned_cols=253  Identities=27%  Similarity=0.388  Sum_probs=216.8

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      |||+++.+++....+++.|.|.+.++||+|||+++++|++|...+.|..  ..|.++|||++|+|+++|+++..|++||+
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~   80 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTGRILGHEGIGIVKEVGPGVTSLKVGDR   80 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCCCCCccCCcccceEEEEECCCCccCCCCCE
Confidence            6899999887754589999999999999999999999999998887754  24678999999999999999999999999


Q ss_pred             EEeec-ccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           91 VLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        91 V~~~~-~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      |++.+ ..+|+.|..|..+..+.|.....  .|+. .+                  |+|++|+.++.+.++++|++++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~~~  139 (338)
T PRK09422         81 VSIAWFFEGCGHCEYCTTGRETLCRSVKN--AGYT-VD------------------GGMAEQCIVTADYAVKVPEGLDPA  139 (338)
T ss_pred             EEEccCCCCCCCChhhcCCCcccCCCccc--cCcc-cc------------------CcceeEEEEchHHeEeCCCCCCHH
Confidence            98754 46899999999999999987643  3322 12                  499999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKA-RGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~-~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      +++.++..+.|||+++ +..+++++++|||+|+|++|++++++|+. +|+ +++++++++++++.++++|++.+++++. 
T Consensus       140 ~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~-  216 (338)
T PRK09422        140 QASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKR-  216 (338)
T ss_pred             HeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEecccc-
Confidence            9999999999999986 77889999999999999999999999998 499 8999999999999999999988888742 


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ..++.+.+++.++ ++|.++++.++...+..+++.++++|++
T Consensus       217 ~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~  257 (338)
T PRK09422        217 VEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAGGRV  257 (338)
T ss_pred             cccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCCCEE
Confidence            1445666777655 6885555555667899999999999986

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.1e-33  Score=255.53  Aligned_cols=240  Identities=27%  Similarity=0.401  Sum_probs=207.8

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCCCCCCCCCCEEE
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVL   92 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~   92 (291)
                      |||+++.+++ +++++++|.|++.++||+||+.++++|++|...+.|.+..|.++|+|++|+|+++|++   +++||||.
T Consensus         1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~~~~~~G~e~~G~Vv~~G~~---~~~G~~V~   76 (319)
T cd08242           1 MKALVLDGGL-DLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYPFPGVPGHEFVGIVEEGPEA---ELVGKRVV   76 (319)
T ss_pred             CeeEEEeCCC-cEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCCCCCccCceEEEEEEEeCCC---CCCCCeEE
Confidence            5899999875 5999999999999999999999999999999998887667889999999999999988   78999999


Q ss_pred             eecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhhh
Q 022819           93 TVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIC  172 (291)
Q Consensus        93 ~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa  172 (291)
                      ..+..+|+.|.+|..+.+++|.....  .++...+                  |+|++|+.++.++++++|+++++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~~~~~~~v~~~~~~~lP~~~~~~~aa  136 (319)
T cd08242          77 GEINIACGRCEYCRRGLYTHCPNRTV--LGIVDRD------------------GAFAEYLTLPLENLHVVPDLVPDEQAV  136 (319)
T ss_pred             ECCCcCCCCChhhhCcCcccCCCCcc--cCccCCC------------------CceEEEEEechHHeEECcCCCCHHHhh
Confidence            99999999999999999988887653  2221112                  489999999999999999999998888


Q ss_pred             hhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchH
Q 022819          173 LLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPV  252 (291)
Q Consensus       173 ~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~  252 (291)
                      .+ ..+.++|. +.+..++.++++|+|+|+|.+|.+++|+|+.+|+ ++++++.++++++.++++|++.+++++.  .  
T Consensus       137 ~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~--~--  209 (319)
T cd08242         137 FA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEA--E--  209 (319)
T ss_pred             hh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc--c--
Confidence            64 34555665 5678889999999999989999999999999999 6999999999999999999988777642  1  


Q ss_pred             HHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          253 QQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       253 ~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                             +.+ ++|++||++|+...+..++++++++|++
T Consensus       210 -------~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~  241 (319)
T cd08242         210 -------SEGGGFDVVVEATGSPSGLELALRLVRPRGTV  241 (319)
T ss_pred             -------ccCCCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence                   233 8999999999877889999999999876

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=1.4e-33  Score=257.75  Aligned_cols=251  Identities=31%  Similarity=0.496  Sum_probs=215.0

Q ss_pred             EEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc----C--CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           15 AAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ----A--IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        15 a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~----~--~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |+++.++. .+++++.|.|.+.++||+|||.++++|+.|...+.+.    .  .+|.++|+|++|+|+++|+++.+|++|
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPG-DLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCC-ceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            45677774 4999999999999999999999999999998876321    1  356789999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      |+|++.+..+|+.|.+|..+.+++|+...+.  +....                  .|+|++|+.++.+.++++|+++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------~g~~~~~~~v~~~~~~~lP~~~~~  139 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPV------------------DGTLCRYVNHPADFCHKLPDNVSL  139 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccC------------------CCceeeeEEecHHHcEECcCCCCH
Confidence            9999999999999999999999999865431  10001                  249999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      ++++.+ ..+.+|++++ +..+++++++++|+|+|++|.+++|+|+.+|+++|+++.+++++.++++++|++.+++++. 
T Consensus       140 ~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-  216 (343)
T cd05285         140 EEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT-  216 (343)
T ss_pred             HHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc-
Confidence            999877 4778899875 8889999999999988999999999999999944899988999999999999999988765 


Q ss_pred             Cch---HHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEP---VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~---~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       .+   +.+.+.+.+.+ ++|++|||+|+...+...+++++++|++
T Consensus       217 -~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~  261 (343)
T cd05285         217 -EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTV  261 (343)
T ss_pred             -ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence             34   36677777766 8999999999866889999999999876

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=1.3e-33  Score=257.69  Aligned_cols=251  Identities=34%  Similarity=0.469  Sum_probs=214.1

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc------CCCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ------AIFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~------~~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      ||++++.+++..+++.+.|.|.|.++|++||+.++++|+.|...+.+.      ...|.++|+|++|+|+.+|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            589999988767999999999999999999999999999998875432      14567899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+..+..+|+.|..|.++++++|+...+  .|..                   ..|+|++|+.++.+.++++|+++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------~~g~~~~~v~v~~~~~~~lP~~~  139 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI--LGVD-------------------TDGCFAEYVVVPEENLWKNDKDI  139 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccce--Eecc-------------------CCCcceEEEEechHHcEECcCCC
Confidence            99999999999999999999999999976433  2211                   12589999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      +++.+ ++...+.++++++.  ...+++++|+|+|+|.+|++++|+|+.+|+.+++++++++++.+.++++|++.+++.+
T Consensus       140 ~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~  216 (341)
T cd05281         140 PPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR  216 (341)
T ss_pred             CHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcc
Confidence            98555 55557788887654  4557899999998899999999999999986688888899999999999998888775


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .  .++. .+.+++.+ ++|++||++|.......++++|+++|++
T Consensus       217 ~--~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~  258 (341)
T cd05281         217 E--EDVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRV  258 (341)
T ss_pred             c--ccHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence            4  5666 77777776 9999999999877889999999999875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=5.3e-34  Score=257.05  Aligned_cols=220  Identities=24%  Similarity=0.345  Sum_probs=177.4

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCC-hhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLC-RSDITAWETQA------IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~-~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      +||++++.+++. +++++.|.|+|+++||+|||++++|| ++|+.++.|.+      .+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            478999998865 99999999999999999999999996 69998888764      358999999999999999998 6


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      |++||||++.    +..|..|.              .|   .+                  |+|+||+.++.+.++++|+
T Consensus        79 ~~vGdrV~~~----~~~c~~~~--------------~~---~~------------------G~~aey~~v~~~~~~~ip~  119 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDV--------------RG---LF------------------GGASKRLVTPASRVCRLDP  119 (308)
T ss_pred             CCCCCEEEEe----Cccccccc--------------cc---cC------------------CcccceEEcCHHHceeCCC
Confidence            9999999874    22232211              01   11                  4999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      +++++. +++. ...+||+++.+ . ..++++++|+|+|++|++++|+|+.+|+..|++++.++++++.++++   .++|
T Consensus       120 ~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~  192 (308)
T TIGR01202       120 ALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLD  192 (308)
T ss_pred             CCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccC
Confidence            999864 5554 56899998644 3 33688999999999999999999999996677888888887776653   3455


Q ss_pred             CCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+  .         ...++|+||||+|++..++.++++++++|++
T Consensus       193 ~~~--~---------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~i  227 (308)
T TIGR01202       193 PEK--D---------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEI  227 (308)
T ss_pred             hhh--c---------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEE
Confidence            432  1         1238999999999977889999999999986

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.6e-33  Score=256.70  Aligned_cols=255  Identities=24%  Similarity=0.358  Sum_probs=215.5

Q ss_pred             eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        14 ~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      ++|+++.++..+++++.+.|.|.++||+||+.++++|++|+..+.+..   .+|.++|||++|+|+++|+++.+|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR   80 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence            478888887669999999999999999999999999999999887754   45789999999999999999999999999


Q ss_pred             EE-eecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           91 VL-TVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        91 V~-~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      |+ ......|++|.+|.++.+++|+...+.++|.. .             ......|+|++|+.++.+.++++|++++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~  146 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKY-P-------------DGTITQGGYADHIVVDERFVFKIPEGLDSA  146 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhcccccc-c-------------CCCcCCCcceeEEEechhheEECCCCCCHH
Confidence            97 44456899999999999999988765433211 0             001112589999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      +++.+.+.+.+||+++.. ..+.++++++|.|+|++|++++++|+.+|+ +++++++++++.+.++++|++.+++.+.  
T Consensus       147 ~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~--  222 (337)
T cd05283         147 AAAPLLCAGITVYSPLKR-NGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD--  222 (337)
T ss_pred             HhhhhhhHHHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc--
Confidence            999999999999998644 468999999999889999999999999999 8999999999999999999988887653  


Q ss_pred             chHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++..   . ..+++|++||++|....+..++++++++|++
T Consensus       223 ~~~~~---~-~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~  259 (337)
T cd05283         223 PEAMK---K-AAGSLDLIIDTVSASHDLDPYLSLLKPGGTL  259 (337)
T ss_pred             hhhhh---h-ccCCceEEEECCCCcchHHHHHHHhcCCCEE
Confidence            33222   1 2348999999999865689999999999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.8e-33  Score=254.66  Aligned_cols=245  Identities=29%  Similarity=0.382  Sum_probs=210.4

Q ss_pred             eeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~-~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      ||++++.+++ +.+++++.+.|+++++||+||+.++++|++|+..+.+..  .+|.++|||++|+|+++|+++..|++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPMPHIPGAEFAGVVEEVGDHVKGVKKGD   80 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCCCCCCCeecccceeEEEEEECCCCCCCCCCC
Confidence            5889987776 458888888888999999999999999999998876532  3477899999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      +|++.+..+|+.|..|..+++++|+...+  .|+. .                  .|+|++|+.++.+.++++|++++++
T Consensus        81 ~V~~~~~~~~~~c~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~~~~  139 (325)
T cd08264          81 RVVVYNRVFDGTCDMCLSGNEMLCRNGGI--IGVV-S------------------NGGYAEYIVVPEKNLFKIPDSISDE  139 (325)
T ss_pred             EEEECCCcCCCCChhhcCCCccccCccce--eecc-C------------------CCceeeEEEcCHHHceeCCCCCCHH
Confidence            99999888999999999999999987543  2221 1                  2489999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      +++.+++.+.+||+++.. .+++++++++|+|+ |++|++++++|+.+|+ +++++.    +.+.++++|++.+++.++ 
T Consensus       140 ~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~~-  212 (325)
T cd08264         140 LAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYDE-  212 (325)
T ss_pred             HhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecchH-
Confidence            999999999999998754 88999999999987 9999999999999999 788875    236778899988887642 


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                         ..+.+++++ +++|+++|++|+ ..+..++++++++|++
T Consensus       213 ---~~~~l~~~~-~~~d~vl~~~g~-~~~~~~~~~l~~~g~~  249 (325)
T cd08264         213 ---VEEKVKEIT-KMADVVINSLGS-SFWDLSLSVLGRGGRL  249 (325)
T ss_pred             ---HHHHHHHHh-CCCCEEEECCCH-HHHHHHHHhhccCCEE
Confidence               345566666 689999999997 6889999999999986

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=2.8e-33  Score=255.39  Aligned_cols=251  Identities=32%  Similarity=0.508  Sum_probs=219.5

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      |||+++.+.++ +.+++.+.|+++++||+||+.++++|+.|...+.+.+  ..|.++|+|++|+|+++|+++..|++||+
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~   79 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYHPPLVLGHEFSGTVEEVGSGVDDLAVGDR   79 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCCCCCcccCcceEEEEEEECCCCCcCCCCCE
Confidence            68999998865 9999999999999999999999999999998877654  35788999999999999999999999999


Q ss_pred             EEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhh
Q 022819           91 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK  170 (291)
Q Consensus        91 V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  170 (291)
                      |+..+...|..|.+|..+++..|+....  .|.. .                  .|+|++|+.++.+.++++|+++++++
T Consensus        80 V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~~~~~~~~~lP~~~~~~~  138 (343)
T cd08236          80 VAVNPLLPCGKCEYCKKGEYSLCSNYDY--IGSR-R------------------DGAFAEYVSVPARNLIKIPDHVDYEE  138 (343)
T ss_pred             EEEcCCCCCCCChhHHCcChhhCCCcce--Eecc-c------------------CCcccceEEechHHeEECcCCCCHHH
Confidence            9999888999999999999999988653  2211 1                  24999999999999999999999999


Q ss_pred             hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 022819          171 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE  250 (291)
Q Consensus       171 aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~  250 (291)
                      ++++ ..+.+||.++. ...+.++++|+|+|+|.+|.+++|+|+.+|+..++++.+++++.++++++|++.+++++.  .
T Consensus       139 aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~--~  214 (343)
T cd08236         139 AAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE--E  214 (343)
T ss_pred             HHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc--c
Confidence            9888 47789999875 778899999999988999999999999999944999988899999999999988888765  4


Q ss_pred             hHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          251 PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       251 ~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      . ...+..+..+ ++|++|||+|....+..++++|+++|++
T Consensus       215 ~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~  254 (343)
T cd08236         215 D-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKV  254 (343)
T ss_pred             c-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence            4 6667777766 7999999998877889999999999876

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=1.5e-33  Score=255.60  Aligned_cols=225  Identities=24%  Similarity=0.290  Sum_probs=194.0

Q ss_pred             eeEEEEecCCCC-----eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCC
Q 022819           13 CKAAVAWGAGQP-----LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        13 ~~a~~~~~~~~~-----~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      |||+++.+++.|     ++++++|.|.|+++||+||+.++++|++|+..+.|.+    .+|.++|||++|+|+++|+++.
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            689999988753     7888999999999999999999999999999887754    3578999999999999999999


Q ss_pred             C-CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEEC
Q 022819           84 E-FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  162 (291)
Q Consensus        84 ~-~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  162 (291)
                      + |++||+|+....                             .+                  |+|++|+.++.+.++++
T Consensus        81 ~~~~vGd~V~~~~~-----------------------------~~------------------g~~a~~~~v~~~~~~~i  113 (324)
T cd08291          81 AQSLIGKRVAFLAG-----------------------------SY------------------GTYAEYAVADAQQCLPL  113 (324)
T ss_pred             ccCCCCCEEEecCC-----------------------------CC------------------CcchheeeecHHHeEEC
Confidence            6 999999975411                             01                  38999999999999999


Q ss_pred             CCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE--cCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          163 SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF--GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       163 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~--G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      |+++++++++.+++.+.|||. +.+..+. ++++++|+  |+|++|++++|+|+.+|+ +++++++++++++.++++|++
T Consensus       114 P~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~  190 (324)
T cd08291         114 PDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAE  190 (324)
T ss_pred             CCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence            999999999988888889975 4555555 45556665  459999999999999999 899999999999999999999


Q ss_pred             eEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          241 EFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       241 ~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+++++.  .++.+.+++++.+ ++|++||++|+. .....+++++++|++
T Consensus       191 ~~i~~~~--~~~~~~v~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~  238 (324)
T cd08291         191 YVLNSSD--PDFLEDLKELIAKLNATIFFDAVGGG-LTGQILLAMPYGSTL  238 (324)
T ss_pred             EEEECCC--ccHHHHHHHHhCCCCCcEEEECCCcH-HHHHHHHhhCCCCEE
Confidence            9998875  6788888888877 899999999984 557789999999985

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=7e-33  Score=252.55  Aligned_cols=253  Identities=28%  Similarity=0.422  Sum_probs=221.6

Q ss_pred             eeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccCC----CCcccCcceeEEEEEcCCCCCCCCC
Q 022819           13 CKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI----FPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        13 ~~a~~~~~~~-~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      |||+++.+++ ..+++++++.|.+.++||+||+.++++|++|..++.+...    .|.++|+|++|+|+++|+++..|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            6899998876 3499999999999999999999999999999988877652    3668999999999999999999999


Q ss_pred             CCEEEeec-ccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           88 GEHVLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        88 GdrV~~~~-~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      ||+|+..+ ...|+.|.+|..++.++|+....  .|+. .                  .|+|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~s~~~~~~~~~~~lp~~~  139 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN--SGYT-V------------------DGTFAEYAIADARYVTPIPDGL  139 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc--cccc-c------------------CCcceeEEEeccccEEECCCCC
Confidence            99998776 46799999999999999988654  2321 1                  2489999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++++++.++..+.|||+++.. .++++++++||+|+ +.+|.+++++|+.+|+ +++++.+++++.+.++++|++.++++
T Consensus       140 ~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~  217 (341)
T cd08297         140 SFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDF  217 (341)
T ss_pred             CHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEcC
Confidence            999999999999999998755 58999999999987 6799999999999999 89999999999999999999999888


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.  .++.+.+.+++.+ ++|++||+.+....+..++++++++|++
T Consensus       218 ~~--~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~  261 (341)
T cd08297         218 KK--SDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTL  261 (341)
T ss_pred             CC--ccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEE
Confidence            65  5777788888766 8999999888778889999999999876

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.2e-33  Score=253.41  Aligned_cols=242  Identities=27%  Similarity=0.434  Sum_probs=203.7

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc--------------CCCCcccCcceeEEEEEc
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--------------AIFPRIFGHEASGIVESV   78 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~--------------~~~p~~~G~e~~G~V~~v   78 (291)
                      |||+++.++  ++++++++.|++.++||+||+.++++|+.|...+.|.              ..+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            588998866  6999999999999999999999999999999888762              124778999999999999


Q ss_pred             CCCCCC-CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc
Q 022819           79 GPGVTE-FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG  157 (291)
Q Consensus        79 G~~~~~-~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  157 (291)
                      |+++++ |++||+|+.++...|+.|..|..++.+            . .                  .|+|++|+.++.+
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~------------~-~------------------~g~~~~~~~v~~~  127 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP------------E-A------------------PGGYAEYMLLSEA  127 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc------------C-C------------------CCceeeeEEechH
Confidence            999987 999999999999999999999322100            0 1                  2489999999999


Q ss_pred             ceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          158 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       158 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      .++++|+++++++++ +...+.+||++ ....+++++++|+|+|+|++|.+++|+|+.+|++.++++++++++.++++++
T Consensus       128 ~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~  205 (341)
T cd08262         128 LLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM  205 (341)
T ss_pred             HeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc
Confidence            999999999999887 55688899987 5888999999999998899999999999999996688888899999999999


Q ss_pred             CCceEeCCCCCCc--hHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          238 GVTEFLNPNDNNE--PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~--~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |++.+++++....  .+. .+.+...+ ++|++||++|++..+..++++++++|++
T Consensus       206 g~~~~i~~~~~~~~~~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~  260 (341)
T cd08262         206 GADIVVDPAADSPFAAWA-AELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRI  260 (341)
T ss_pred             CCcEEEcCCCcCHHHHHH-HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence            9988888754111  222 34444445 8999999999865788899999999875

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=1.3e-33  Score=251.16  Aligned_cols=206  Identities=26%  Similarity=0.412  Sum_probs=174.7

Q ss_pred             ccCcceeEEEEEcCCCCC------CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCcc
Q 022819           66 IFGHEASGIVESVGPGVT------EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPV  139 (291)
Q Consensus        66 ~~G~e~~G~V~~vG~~~~------~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~  139 (291)
                      ++|||++|+|+++|++++      +|++||||++.+..+|+.|.+|+.++++.|+...+  +|.....+           
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~~~~~-----------   67 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK--YGHEALDS-----------   67 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh--cCcccccC-----------
Confidence            589999999999999998      89999999999999999999999999999987654  23210000           


Q ss_pred             ccccCccceeeEEEeecc-ceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 022819          140 YHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA  218 (291)
Q Consensus       140 ~~~~~~g~~~~~~~~~~~-~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~  218 (291)
                       .....|+|+||+.++.. .++++|+++++++++.+++.+.|+|+++. .....++++|||+|+|++|++++|+|+.+|+
T Consensus        68 -~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~  145 (280)
T TIGR03366        68 -GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALE-AAGDLKGRRVLVVGAGMLGLTAAAAAAAAGA  145 (280)
T ss_pred             -CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHH-hccCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence             00012599999999997 79999999999999999989999999764 4455699999999999999999999999999


Q ss_pred             CeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          219 SRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       219 ~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+|++++++++|+++++++|++.++++++    ..+.+++.+.+ ++|++||++|.+..++.++++++++|++
T Consensus       146 ~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~i  214 (280)
T TIGR03366       146 ARVVAADPSPDRRELALSFGATALAEPEV----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTA  214 (280)
T ss_pred             CEEEEECCCHHHHHHHHHcCCcEecCchh----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEE
Confidence            55999999999999999999998887642    24556667766 8999999999888899999999999986

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1e-32  Score=249.65  Aligned_cols=248  Identities=33%  Similarity=0.523  Sum_probs=215.8

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |+|+++.++++++.++++|.|.+.++||+|+++++++|++|+..+.|..   ..|.++|+|++|+|+++|+++..|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd   80 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD   80 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence            5899998766679999999999999999999999999999999887754   4567899999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      +|+.+....|+.|.+|..+.++.|+..  ..+|.. .                  .|+|++|+.++...++++|++++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~~~  139 (332)
T cd08259          81 RVILYYYIPCGKCEYCLSGEENLCRNR--AEYGEE-V------------------DGGFAEYVKVPERSLVKLPDNVSDE  139 (332)
T ss_pred             EEEECCCCCCcCChhhhCCCcccCCCc--cccccc-c------------------CCeeeeEEEechhheEECCCCCCHH
Confidence            999999999999999999999999875  334432 1                  2489999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      +++.+++.+.+||+++.. ..+.++++++|+|+ |++|++++++++.+|. +++++.+++++.+.+++++.+.+++.+  
T Consensus       140 ~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~--  215 (332)
T cd08259         140 SAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS--  215 (332)
T ss_pred             HHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH--
Confidence            999999999999998766 88999999999987 9999999999999999 888888888999999888887777553  


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       . +.+.+.+..  ++|++++++|.. ....+++.++++|++
T Consensus       216 -~-~~~~~~~~~--~~d~v~~~~g~~-~~~~~~~~~~~~g~~  252 (332)
T cd08259         216 -K-FSEDVKKLG--GADVVIELVGSP-TIEESLRSLNKGGRL  252 (332)
T ss_pred             -H-HHHHHHhcc--CCCEEEECCChH-HHHHHHHHhhcCCEE
Confidence             2 555555543  799999999984 578899999988875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.2e-32  Score=249.38  Aligned_cols=253  Identities=25%  Similarity=0.410  Sum_probs=218.8

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+++.+  +.+++.+.|.+.+++|+||+.++++|++|...+.|..    ..|.++|||++|+|+++|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            578888844332  7788888888999999999999999999998887754    2477899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|++.+..+|+.|.+|..++++.|+...+  .|.. .                  .|+|++|+.++.+.++++|+++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~------------------~g~~~~~~~~~~~~~~~~p~~~  139 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI--LGEH-V------------------DGGYAEYVAVPARNLLPIPDNL  139 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc--cccc-c------------------CcceeEEEEechHHceeCCCCC
Confidence            99999999999999999999999999987543  2321 1                  2489999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++++++.+++.+.++|+++.+..++.++++++|+|+ +.+|++++++++.+|+ +++.+++++++.+.++.++.+..++.
T Consensus       140 ~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~  218 (342)
T cd08266         140 SFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDY  218 (342)
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEec
Confidence            999999999999999999888889999999999987 6999999999999999 88999899999999988888777766


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ..  .++.+.+.+.+.+ ++|++++++|. ..+..+++.++++|++
T Consensus       219 ~~--~~~~~~~~~~~~~~~~d~~i~~~g~-~~~~~~~~~l~~~G~~  261 (342)
T cd08266         219 RK--EDFVREVRELTGKRGVDVVVEHVGA-ATWEKSLKSLARGGRL  261 (342)
T ss_pred             CC--hHHHHHHHHHhCCCCCcEEEECCcH-HHHHHHHHHhhcCCEE
Confidence            54  5666667776665 89999999997 5788899999999875

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=8.3e-33  Score=249.80  Aligned_cols=225  Identities=21%  Similarity=0.290  Sum_probs=198.9

Q ss_pred             eeEEEEecCCCC---eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCC
Q 022819           13 CKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        13 ~~a~~~~~~~~~---~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      |||+++.+++.|   ++++++|.|.+.++||+|||.++++|+.|+..+.|..    ..|.++|||++|+|+++|+++.+|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            589999887654   7889999999999999999999999999998887754    346789999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||+|+....                                                .|+|++|+.++...++++|++
T Consensus        81 ~~Gd~V~~~~~------------------------------------------------~g~~~~~~~~~~~~~~~ip~~  112 (324)
T cd08292          81 QVGQRVAVAPV------------------------------------------------HGTWAEYFVAPADGLVPLPDG  112 (324)
T ss_pred             CCCCEEEeccC------------------------------------------------CCcceeEEEEchHHeEECCCC
Confidence            99999976521                                                148999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      +++++++.+++.+.++|+++ +..++.++++|||+|+ |.+|++++|+|+.+|+ .++++..++++.+.++++|++.+++
T Consensus       113 ~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~  190 (324)
T cd08292         113 ISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVS  190 (324)
T ss_pred             CCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEc
Confidence            99999999988889999875 5688999999999986 9999999999999999 8888888888888888899988888


Q ss_pred             CCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++  .++...+.+++.+ ++|++||++|+ ..+..++++++++|++
T Consensus       191 ~~~--~~~~~~i~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~  234 (324)
T cd08292         191 TEQ--PGWQDKVREAAGGAPISVALDSVGG-KLAGELLSLLGEGGTL  234 (324)
T ss_pred             CCC--chHHHHHHHHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEE
Confidence            765  6788888888887 99999999998 4678999999999886

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=1.8e-32  Score=248.85  Aligned_cols=250  Identities=33%  Similarity=0.496  Sum_probs=216.5

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      |||+++.++++ +++.+.|.|.+.++||+||+.++++|+.|...+.|..  .+|.++|+|++|+|+++|+++.+|++||+
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~   79 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAAPPLVPGHEFAGVVVAVGSKVTGFKVGDR   79 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCE
Confidence            68999998874 9999999999999999999999999999999887765  46779999999999999999999999999


Q ss_pred             EEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhh
Q 022819           91 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK  170 (291)
Q Consensus        91 V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  170 (291)
                      |+..+..+|+.|..|..+++++|.....  .|.. .+                  |+|++|+.++.+.++++|+++++.+
T Consensus        80 V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~lP~~~~~~~  138 (334)
T cd08234          80 VAVDPNIYCGECFYCRRGRPNLCENLTA--VGVT-RN------------------GGFAEYVVVPAKQVYKIPDNLSFEE  138 (334)
T ss_pred             EEEcCCcCCCCCccccCcChhhCCCcce--eccC-CC------------------CcceeEEEecHHHcEECcCCCCHHH
Confidence            9998888999999999999999988763  2211 12                  4899999999999999999999999


Q ss_pred             hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 022819          171 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE  250 (291)
Q Consensus       171 aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~  250 (291)
                      ++.+ ..+.++++++ +..++.++++++|+|+|.+|.+++++|+.+|+..++++++++++.+.++++|++.+++.+.  .
T Consensus       139 aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~  214 (334)
T cd08234         139 AALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR--E  214 (334)
T ss_pred             Hhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC--C
Confidence            8876 6778888887 7889999999999988999999999999999944888989999999999999888887754  3


Q ss_pred             hHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          251 PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       251 ~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++...  +.+.+ ++|++||++|....+..++++++++|++
T Consensus       215 ~~~~~--~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~  253 (334)
T cd08234         215 DPEAQ--KEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTV  253 (334)
T ss_pred             CHHHH--HHhcCCCCcEEEECCCChHHHHHHHHHHhcCCEE
Confidence            33333  33344 8999999998777889999999999876

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=1.1e-32  Score=249.53  Aligned_cols=221  Identities=22%  Similarity=0.264  Sum_probs=190.0

Q ss_pred             eeeEEEEecC--CCC----eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCCCCCC
Q 022819           12 TCKAAVAWGA--GQP----LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        12 ~~~a~~~~~~--~~~----~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      +|++|++.++  +.+    +++++.|.|+|+++||+|||++++||+.|..........|.++|+|++|+|++.   +++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~~~~~p~v~G~e~~G~V~~~---~~~~   78 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKRLNEGDTMIGTQVAKVIESK---NSKF   78 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhcccccCCCCCcEecceEEEEEecC---CCCC
Confidence            6899999983  333    889999999999999999999999999887643322246889999999999963   4579


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc---ceEEC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG---CAVKV  162 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~i  162 (291)
                      ++||||+..                                                   ++|++|..++.+   .++++
T Consensus        79 ~~Gd~V~~~---------------------------------------------------~~~~~~~~~~~~~~~~~~~i  107 (329)
T cd08294          79 PVGTIVVAS---------------------------------------------------FGWRTHTVSDGKDQPDLYKL  107 (329)
T ss_pred             CCCCEEEee---------------------------------------------------CCeeeEEEECCccccceEEC
Confidence            999999542                                                   268899999999   99999


Q ss_pred             CCCCC--h---hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          163 SSIAP--L---EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       163 p~~~~--~---~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      |++++  +   ..+++++++++|||+++.+..+++++++|||+|+ |++|.+++|+|+.+|+ +|+++++++++.+++++
T Consensus       108 P~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~  186 (329)
T cd08294         108 PADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE  186 (329)
T ss_pred             CccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            99987  2   2334677899999999888899999999999985 9999999999999999 89999999999999999


Q ss_pred             cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          237 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       237 ~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +|++.++++++  .++.+.+++++.+++|++||++|+ ..+..++++++++|++
T Consensus       187 ~Ga~~vi~~~~--~~~~~~v~~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~i  237 (329)
T cd08294         187 LGFDAVFNYKT--VSLEEALKEAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRV  237 (329)
T ss_pred             cCCCEEEeCCC--ccHHHHHHHHCCCCcEEEEECCCH-HHHHHHHHhhccCCEE
Confidence            99999998875  677788888776689999999998 6789999999999986

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=1.1e-32  Score=251.60  Aligned_cols=213  Identities=18%  Similarity=0.236  Sum_probs=181.4

Q ss_pred             eEEEEeecCCCC-CCcEEEEEeEeeCChhhhhhhc---cc---CCCCcccCcceeEEEEEcCCCCCCCCCCCEEEeeccc
Q 022819           25 LVVEEVEVNPPQ-PEEIRIKVVCTSLCRSDITAWE---TQ---AIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIG   97 (291)
Q Consensus        25 ~~~~~~~~~~~~-~~eVlVkv~~~~i~~~D~~~~~---g~---~~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~   97 (291)
                      +++++.|.|.|. ++||||||.+++||+.|.....   +.   ..+|.++|||++|+|+++|+++++|++||||+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            889999999875 9999999999999999863322   21   14578899999999999999999999999995420  


Q ss_pred             CCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhh----hhh
Q 022819           98 ECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK----ICL  173 (291)
Q Consensus        98 ~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~----aa~  173 (291)
                                                                      ++|++|+.++.+.++++|+++++.+    ++.
T Consensus       101 ------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~  132 (345)
T cd08293         101 ------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGA  132 (345)
T ss_pred             ------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhhh
Confidence                                                            2799999999999999999864332    455


Q ss_pred             hhhhhhhhHhHHHhhcCCCCC--CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEeCCCCCC
Q 022819          174 LSCGLSAGLGAAWNVADISKG--STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNN  249 (291)
Q Consensus       174 ~~~~~~ta~~~l~~~~~~~~~--~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i~~~~~~  249 (291)
                      ++.++.|||+++.+..+++++  ++|||+|+ |++|++++|+|+.+|+.+|+++++++++.+.+++ +|++.++++++  
T Consensus       133 ~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~--  210 (345)
T cd08293         133 VGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT--  210 (345)
T ss_pred             cCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC--
Confidence            667899999998888888876  99999987 9999999999999998669999999999998876 99999998875  


Q ss_pred             chHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++.+.+++++++++|++||++|+. .+..++++|+++|++
T Consensus       211 ~~~~~~i~~~~~~gvd~vid~~g~~-~~~~~~~~l~~~G~i  250 (345)
T cd08293         211 DNVAERLRELCPEGVDVYFDNVGGE-ISDTVISQMNENSHI  250 (345)
T ss_pred             CCHHHHHHHHCCCCceEEEECCCcH-HHHHHHHHhccCCEE
Confidence            6788888887766899999999984 579999999999986

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.8e-32  Score=245.58  Aligned_cols=252  Identities=31%  Similarity=0.493  Sum_probs=215.3

Q ss_pred             eeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~-~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      ||+++..++. +.+++++++.|.+.++||+||+.++++|++|...+.+..   ..|.++|+|++|+|+++|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   80 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG   80 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence            5789988755 349999999999999999999999999999998877754   457889999999999999999999999


Q ss_pred             CEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           89 EHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        89 drV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      |+|+..+. ..|+.|..|..+.++.|+.-..  +|.. .                  .|+|++|+.++.+.++++|++++
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~v~~~~~~~lp~~~~  139 (306)
T cd08258          81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG--IGTQ-A------------------DGGFAEYVLVPEESLHELPENLS  139 (306)
T ss_pred             CEEEEccCcCCCCCCcchhCcCcccCCCCce--eeec-C------------------CCceEEEEEcchHHeEECcCCCC
Confidence            99998875 6899999999998888876321  2221 1                  24999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc--CChhhHHHHHHcCCceEeCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD--TNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~--~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++++ +...+.++|+++....+++++++|+|.|+|.+|.+++|+|+.+|+ +|+++.  +++++.++++++|++.+ ++
T Consensus       140 ~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~~  216 (306)
T cd08258         140 LEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-NG  216 (306)
T ss_pred             HHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-CC
Confidence            99887 666888999998888999999999998889999999999999999 777763  35568888899999777 76


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.  .++.+.+.+++.+ ++|.+||++|....+...++.|+++|++
T Consensus       217 ~~--~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~  260 (306)
T cd08258         217 GE--EDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRI  260 (306)
T ss_pred             Cc--CCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence            54  6777788887766 8999999998767889999999999986

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=2e-32  Score=248.30  Aligned_cols=248  Identities=29%  Similarity=0.443  Sum_probs=214.5

Q ss_pred             eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        14 ~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      ||+++.+++..+++++.|.|.+.+++|+||+.++++|++|...+.+..   .+|.++|+|++|+|+++|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~   80 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR   80 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence            588999886669999999999999999999999999999998887754   45678999999999999999999999999


Q ss_pred             EEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           91 VLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        91 V~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      |++.+. .+|+.|.+|.++++++|++..+...+   .+                  |+|++|+.++.+.++++|+++++.
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------g~~~~~~~v~~~~~~~~p~~~~~~  139 (330)
T cd08245          81 VGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYT---TQ------------------GGYAEYMVADAEYTVLLPDGLPLA  139 (330)
T ss_pred             EEEccccCCCCCChhhhCcCcccCcCccccCcc---cC------------------CccccEEEEcHHHeEECCCCCCHH
Confidence            988665 67999999999999999997653221   12                  489999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      +++.+.+.+.+||.++.. ..+.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.+++...  
T Consensus       140 ~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--  215 (330)
T cd08245         140 QAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA--  215 (330)
T ss_pred             HhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC--
Confidence            999999999999998754 788999999999888899999999999999 8999999999999999999888877653  


Q ss_pred             chHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ......    ..+++|+++|+++.......+++.++++|++
T Consensus       216 ~~~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~  252 (330)
T cd08245         216 ELDEQA----AAGGADVILVTVVSGAAAEAALGGLRRGGRI  252 (330)
T ss_pred             cchHHh----ccCCCCEEEECCCcHHHHHHHHHhcccCCEE
Confidence            222222    2247999999988777889999999999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.3e-32  Score=247.82  Aligned_cols=244  Identities=29%  Similarity=0.440  Sum_probs=213.7

Q ss_pred             eeEEEEecCCC----CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCC
Q 022819           13 CKAAVAWGAGQ----PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        13 ~~a~~~~~~~~----~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      |+++++.+++.    ++.+++.+.|.++++||+||+.++++|++|+..+.|..   ..|.++|||++|+|+++|+++.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            68999998874    58888888888999999999999999999999887754   456799999999999999999999


Q ss_pred             CCCCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           86 NEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        86 ~~GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      ++||+|++.+. .+|+.|..|..+.+++|+...+.  |+. .+                  |+|++|+.++.+.++++|+
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------------g~~~~~~~~~~~~~~~lp~  139 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFT--GYT-VD------------------GGYAEYMVADERFAYPIPE  139 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCcccc--ccc-cC------------------CceEEEEEecchhEEECCC
Confidence            99999977654 57899999999999999877642  321 12                  4899999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++++.+++.+.+.+.+||+++ +..+++++++++|+|+|++|++++++++.+|+ +++++.+++++++.++++|++.+++
T Consensus       140 ~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  217 (329)
T cd08298         140 DYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGD  217 (329)
T ss_pred             CCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEec
Confidence            999999999999999999987 88999999999999999999999999999998 8999999999999999999988777


Q ss_pred             CCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.  .         ...++|+++++.+....++.++++++++|++
T Consensus       218 ~~~--~---------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~  252 (329)
T cd08298         218 SDD--L---------PPEPLDAAIIFAPVGALVPAALRAVKKGGRV  252 (329)
T ss_pred             cCc--c---------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEE
Confidence            653  1         1237999999877777899999999999876

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.6e-32  Score=248.10  Aligned_cols=228  Identities=19%  Similarity=0.248  Sum_probs=196.7

Q ss_pred             eEEEEecC---CCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCC
Q 022819           14 KAAVAWGA---GQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        14 ~a~~~~~~---~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      |||++.++   +.+  ++++++|.|+|+++||+|||+++++|+.|..++.+..   .+|.++|+|++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            57788876   444  7888999999999999999999999999998877654   456789999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||+|+....                          .. .                  .|+|++|+.++.+.++++|++
T Consensus        81 ~~Gd~V~~~~~--------------------------~~-~------------------~g~~~~~~~v~~~~~~~ip~~  115 (336)
T TIGR02817        81 KPGDEVWYAGD--------------------------ID-R------------------PGSNAEFHLVDERIVGHKPKS  115 (336)
T ss_pred             CCCCEEEEcCC--------------------------CC-C------------------CCcccceEEEcHHHcccCCCC
Confidence            99999965310                          00 1                  148999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCC-----CCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISK-----GSTVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~vlV~G~-g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      +++++++.+++.+.|||+++.+..++.+     +++|||+|+ |++|++++|+|+.+ |+ +|+++.+++++.+.++++|
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g  194 (336)
T TIGR02817       116 LSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELG  194 (336)
T ss_pred             CCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcC
Confidence            9999999999999999999888888877     999999986 99999999999998 99 8999989999999999999


Q ss_pred             CceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          239 VTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       239 ~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.+++++   .++...+++...+++|+++|++++...+...+++++++|++
T Consensus       195 ~~~~~~~~---~~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~  243 (336)
T TIGR02817       195 AHHVIDHS---KPLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRF  243 (336)
T ss_pred             CCEEEECC---CCHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEE
Confidence            99988764   35666777754448999999987767889999999999986

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=3.6e-32  Score=247.64  Aligned_cols=249  Identities=30%  Similarity=0.479  Sum_probs=206.6

Q ss_pred             EEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhc-ccC-----CCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           17 VAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQA-----IFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~-g~~-----~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      +++++++ +++++.|+|.++++||+||+.++++|++|...+. +..     .+|.++|+|++|+|+++|+++.+|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            5677755 9999999999999999999999999999987763 321     35778999999999999999999999999


Q ss_pred             EEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhh
Q 022819           91 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK  170 (291)
Q Consensus        91 V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  170 (291)
                      |++.+...|+.|.+|..++.+.|+...+  .|....+              .+..|+|++|+.++.+.++++|+++++++
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~--------------~~~~g~~~~~v~v~~~~~~~iP~~~~~~~  144 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF--LGSAMRF--------------PHVQGGFREYLVVDASQCVPLPDGLSLRR  144 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc--eeecccc--------------CCCCCceeeEEEechHHeEECcCCCCHHH
Confidence            9999999999999999999999997543  2211000              00125999999999999999999999999


Q ss_pred             hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 022819          171 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE  250 (291)
Q Consensus       171 aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~  250 (291)
                      |+. ...+.++|+++.+...+ ++++|||.|+|.+|.+++|+|+.+|+.+++++++++++.++++++|++.++++++  .
T Consensus       145 aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~--~  220 (339)
T cd08232         145 AAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR--D  220 (339)
T ss_pred             hhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc--h
Confidence            876 46888999887666666 8999999988999999999999999867899988899999999999988888764  3


Q ss_pred             hHHHHHHHHh-cC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          251 PVQQVIKRIT-DG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       251 ~~~~~~~~~~-~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++    .++. .. ++|++||++|....+...++.|+++|++
T Consensus       221 ~~----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~  258 (339)
T cd08232         221 PL----AAYAADKGDFDVVFEASGAPAALASALRVVRPGGTV  258 (339)
T ss_pred             hh----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            32    2222 22 6999999999767789999999999886

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=1.3e-32  Score=234.96  Aligned_cols=231  Identities=23%  Similarity=0.314  Sum_probs=195.3

Q ss_pred             cceeeeEEEEecCCCC---eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCC
Q 022819            9 QVITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPG   81 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~   81 (291)
                      ++...|++++...+.|   ++++++++|....++|+||.+|+.|||+|+..++|.|    .+|.+-|+|++|+|+.+|++
T Consensus        16 ~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~   95 (354)
T KOG0025|consen   16 MPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSN   95 (354)
T ss_pred             cccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCC
Confidence            6678899999999888   8899999999888889999999999999999999999    67889999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEE
Q 022819           82 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK  161 (291)
Q Consensus        82 ~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (291)
                      +.+|++||+|+....+                                               .|+|++|.+.+++.+++
T Consensus        96 vkgfk~Gd~VIp~~a~-----------------------------------------------lGtW~t~~v~~e~~Li~  128 (354)
T KOG0025|consen   96 VKGFKPGDWVIPLSAN-----------------------------------------------LGTWRTEAVFSESDLIK  128 (354)
T ss_pred             cCccCCCCeEeecCCC-----------------------------------------------CccceeeEeecccceEE
Confidence            9999999999776442                                               36999999999999999


Q ss_pred             CCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HH
Q 022819          162 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KA  236 (291)
Q Consensus       162 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~  236 (291)
                      ++..++++.||++.++-+|||..|.+..++.+||+|+-.|+ +.+|.+++|+|+++|+ +.|.+.++....+.+    +.
T Consensus       129 vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~Lk~  207 (354)
T KOG0025|consen  129 VDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQLKS  207 (354)
T ss_pred             cCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999988888 9999999999999999 666666766555444    56


Q ss_pred             cCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          237 FGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       237 ~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +|+++|+.-.+  -.-.+..+..... ++...|+|+|+. ......+.|.+||++
T Consensus       208 lGA~~ViTeee--l~~~~~~k~~~~~~~prLalNcVGGk-sa~~iar~L~~Ggtm  259 (354)
T KOG0025|consen  208 LGATEVITEEE--LRDRKMKKFKGDNPRPRLALNCVGGK-SATEIARYLERGGTM  259 (354)
T ss_pred             cCCceEecHHH--hcchhhhhhhccCCCceEEEeccCch-hHHHHHHHHhcCceE
Confidence            89999985432  1111112222233 788999999995 456777888888865

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=5.3e-32  Score=246.93  Aligned_cols=246  Identities=30%  Similarity=0.451  Sum_probs=211.1

Q ss_pred             ecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCCCCCCCEEE
Q 022819           19 WGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTEFNEGEHVL   92 (291)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~   92 (291)
                      ++|+.++++++.|.|.|.++||+||+.++++|+.|...+.+..      .+|.++|+|++|+|+++|+++++|++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            4678889999999999999999999999999999988754431      3467899999999999999999999999999


Q ss_pred             eecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhhh
Q 022819           93 TVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIC  172 (291)
Q Consensus        93 ~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa  172 (291)
                      ..+...|+.|..|..+..++|+...+.  |.. ..                  |+|++|+.++.+.++++|++++++.+ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~~~a-  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKIF--GVD-TD------------------GCFAEYAVVPAQNIWKNPKSIPPEYA-  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcceE--eec-CC------------------CcceeEEEeehHHcEECcCCCChHhh-
Confidence            999999999999999999999987542  221 12                  48999999999999999999998655 


Q ss_pred             hhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchH
Q 022819          173 LLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPV  252 (291)
Q Consensus       173 ~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~  252 (291)
                      +++..+.++++++  .....++++++|.|+|++|.+++|+|+.+|++.|+++++++++.++++++|++.++++..  .++
T Consensus       143 ~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~  218 (340)
T TIGR00692       143 TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK--EDV  218 (340)
T ss_pred             hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc--cCH
Confidence            4666888888865  345678999999888999999999999999944888888899999999999988888765  677


Q ss_pred             HHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          253 QQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       253 ~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.+.+++.+ ++|++||++|+...+...+++|+++|++
T Consensus       219 ~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~  257 (340)
T TIGR00692       219 VKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRV  257 (340)
T ss_pred             HHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEE
Confidence            7888887766 8999999999877889999999999875

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=6.4e-32  Score=244.95  Aligned_cols=209  Identities=19%  Similarity=0.258  Sum_probs=178.9

Q ss_pred             eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCcc
Q 022819           25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQ  104 (291)
Q Consensus        25 ~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~  104 (291)
                      +++++.|.|.|++|||||||.++++|+.+..........|.++|.|++|+|+++|+   +|++||||+..          
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~----------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMRVAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS----------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHhcccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe----------
Confidence            88999999999999999999999999976543322224578999999999999874   59999999543          


Q ss_pred             ccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEEC----CCCCChhhh-hhhhhhhh
Q 022819          105 CKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV----SSIAPLEKI-CLLSCGLS  179 (291)
Q Consensus       105 ~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i----p~~~~~~~a-a~~~~~~~  179 (291)
                                                               ++|++|+.++.+.+.++    |++++++++ +++++++.
T Consensus        86 -----------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~  124 (325)
T TIGR02825        86 -----------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGL  124 (325)
T ss_pred             -----------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHH
Confidence                                                     26888999998888777    999999987 67888999


Q ss_pred             hhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHH
Q 022819          180 AGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       180 ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~  258 (291)
                      |||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.++++|++.++++++ ..++.+.+++
T Consensus       125 TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~  202 (325)
T TIGR02825       125 TAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT-VKSLEETLKK  202 (325)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc-cccHHHHHHH
Confidence            99999889999999999999986 9999999999999999 8999999999999999999999998864 1245555666


Q ss_pred             HhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+++++|++||++|+ ..+..++++++++|++
T Consensus       203 ~~~~gvdvv~d~~G~-~~~~~~~~~l~~~G~i  233 (325)
T TIGR02825       203 ASPDGYDCYFDNVGG-EFSNTVIGQMKKFGRI  233 (325)
T ss_pred             hCCCCeEEEEECCCH-HHHHHHHHHhCcCcEE
Confidence            554589999999998 4679999999999986

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-31  Score=245.67  Aligned_cols=228  Identities=23%  Similarity=0.303  Sum_probs=189.4

Q ss_pred             cceeeeEEEEecCC--CC----eEEEEe---ecC-CCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCc--ceeE
Q 022819            9 QVITCKAAVAWGAG--QP----LVVEEV---EVN-PPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGH--EASG   73 (291)
Q Consensus         9 ~~~~~~a~~~~~~~--~~----~~~~~~---~~~-~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~--e~~G   73 (291)
                      ..+++|+|++-+..  -|    |++.+.   +.| ++++||||||+.++++||.|...+.+..   ..|.++|+  |++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G   84 (348)
T PLN03154          5 QVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFG   84 (348)
T ss_pred             ccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeE
Confidence            45667999996532  11    777773   555 3579999999999999999886543311   35788998  8899


Q ss_pred             EEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEE
Q 022819           74 IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTV  153 (291)
Q Consensus        74 ~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  153 (291)
                      +|+.+|+++++|++||+|+..                                                   |+|++|..
T Consensus        85 ~v~~vg~~v~~~~~Gd~V~~~---------------------------------------------------~~~aey~~  113 (348)
T PLN03154         85 VSKVVDSDDPNFKPGDLISGI---------------------------------------------------TGWEEYSL  113 (348)
T ss_pred             EEEEEecCCCCCCCCCEEEec---------------------------------------------------CCcEEEEE
Confidence            999999999999999999432                                                   37999988


Q ss_pred             eecc--ceEE--CCCCCChh-hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          154 VHSG--CAVK--VSSIAPLE-KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       154 ~~~~--~~~~--ip~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ++..  ++++  +|++++++ +++.+++++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|++++++
T Consensus       114 v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~  192 (348)
T PLN03154        114 IRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGS  192 (348)
T ss_pred             EeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCC
Confidence            8874  3544  59999986 688899999999999888889999999999987 9999999999999999 89999999


Q ss_pred             hhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          228 PEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       228 ~~~~~~a~-~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++++++ ++|++.++++++ ..++.+.+++.+++++|++||++|+ ..+..++++++++|++
T Consensus       193 ~~k~~~~~~~lGa~~vi~~~~-~~~~~~~i~~~~~~gvD~v~d~vG~-~~~~~~~~~l~~~G~i  254 (348)
T PLN03154        193 SQKVDLLKNKLGFDEAFNYKE-EPDLDAALKRYFPEGIDIYFDNVGG-DMLDAALLNMKIHGRI  254 (348)
T ss_pred             HHHHHHHHHhcCCCEEEECCC-cccHHHHHHHHCCCCcEEEEECCCH-HHHHHHHHHhccCCEE
Confidence            99999987 799999998863 1367777887766689999999998 5889999999999986

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=1.2e-31  Score=244.38  Aligned_cols=225  Identities=22%  Similarity=0.287  Sum_probs=189.2

Q ss_pred             eeeEEEEecCCC-CeEEEEeec----CCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcce--eEEEEEcCC
Q 022819           12 TCKAAVAWGAGQ-PLVVEEVEV----NPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEA--SGIVESVGP   80 (291)
Q Consensus        12 ~~~a~~~~~~~~-~~~~~~~~~----~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~--~G~V~~vG~   80 (291)
                      -.|+|+...|.. .|++++.++    |+|+++||||||++++||+.|++.+.|..    ..|.++|++.  .|.+..+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~   86 (338)
T cd08295           7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS   86 (338)
T ss_pred             EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence            345566444432 288898887    88999999999999999999999887743    3577889754  455556788


Q ss_pred             CCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeec-cce
Q 022819           81 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS-GCA  159 (291)
Q Consensus        81 ~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~  159 (291)
                      .+++|++||+|+.+                                                   |+|+||+.++. +.+
T Consensus        87 ~v~~~~vGd~V~~~---------------------------------------------------g~~aey~~v~~~~~~  115 (338)
T cd08295          87 GNPDFKVGDLVWGF---------------------------------------------------TGWEEYSLIPRGQDL  115 (338)
T ss_pred             CCCCCCCCCEEEec---------------------------------------------------CCceeEEEecchhce
Confidence            88889999999532                                                   38999999999 799


Q ss_pred             EECC-CCCChh-hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          160 VKVS-SIAPLE-KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       160 ~~ip-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      +++| +.+++. +++.+++++.|||+++.+..+++++++|||+|+ |++|.+++|+|+.+|+ +|+++++++++.+.+++
T Consensus       116 ~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~  194 (338)
T cd08295         116 RKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKN  194 (338)
T ss_pred             eecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            9995 678876 788899999999999888899999999999987 9999999999999999 89999899999999998


Q ss_pred             -cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          237 -FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       237 -~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       +|++.++++++ +.++.+.+++.+++++|++||++|+ ..+..++++++++|++
T Consensus       195 ~lGa~~vi~~~~-~~~~~~~i~~~~~~gvd~v~d~~g~-~~~~~~~~~l~~~G~i  247 (338)
T cd08295         195 KLGFDDAFNYKE-EPDLDAALKRYFPNGIDIYFDNVGG-KMLDAVLLNMNLHGRI  247 (338)
T ss_pred             hcCCceeEEcCC-cccHHHHHHHhCCCCcEEEEECCCH-HHHHHHHHHhccCcEE
Confidence             99999998653 1467777777765689999999998 6789999999999986

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=2.2e-31  Score=242.60  Aligned_cols=227  Identities=25%  Similarity=0.348  Sum_probs=196.7

Q ss_pred             eeEEEEecCCCC---eEEEEeecCCCCC-CcEEEEEeEeeCChhhhhhhcccCC--------CCcccCcceeEEEEEcCC
Q 022819           13 CKAAVAWGAGQP---LVVEEVEVNPPQP-EEIRIKVVCTSLCRSDITAWETQAI--------FPRIFGHEASGIVESVGP   80 (291)
Q Consensus        13 ~~a~~~~~~~~~---~~~~~~~~~~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~--------~p~~~G~e~~G~V~~vG~   80 (291)
                      |||+++.+++.|   +.+++.|.|.|.+ +||+||+.++++|+.|...+.|...        .|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            689999998876   8999999999888 9999999999999999998877642        566899999999999999


Q ss_pred             CCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceE
Q 022819           81 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (291)
Q Consensus        81 ~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  160 (291)
                      ++..|++||+|+....                             .                  .|+|++|+.++.+.++
T Consensus        81 ~v~~~~~Gd~V~~~~~-----------------------------~------------------~g~~~~~~~v~~~~~~  113 (341)
T cd08290          81 GVKSLKPGDWVIPLRP-----------------------------G------------------LGTWRTHAVVPADDLI  113 (341)
T ss_pred             CCCCCCCCCEEEecCC-----------------------------C------------------CccchheEeccHHHeE
Confidence            9999999999976521                             0                  1489999999999999


Q ss_pred             ECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----hhHHHHH
Q 022819          161 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----EKCEKAK  235 (291)
Q Consensus       161 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~----~~~~~a~  235 (291)
                      ++|+++++++++.+++.+.|||+++.....+.++++|||+|+ |++|++++|+|+++|+ +++++..++    ++.+.++
T Consensus       114 ~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~  192 (341)
T cd08290         114 KVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLK  192 (341)
T ss_pred             eCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHH
Confidence            999999999999999999999999877788999999999987 9999999999999999 777776655    6788889


Q ss_pred             HcCCceEeCCCCCCc---hHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          236 AFGVTEFLNPNDNNE---PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       236 ~~g~~~~i~~~~~~~---~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|++.+++++.  .   ++...+..++.+++|.+||++|+. .+..++++++++|++
T Consensus       193 ~~g~~~~~~~~~--~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~  247 (341)
T cd08290         193 ALGADHVLTEEE--LRSLLATELLKSAPGGRPKLALNCVGGK-SATELARLLSPGGTM  247 (341)
T ss_pred             hcCCCEEEeCcc--cccccHHHHHHHHcCCCceEEEECcCcH-hHHHHHHHhCCCCEE
Confidence            999999888754  3   666777776655899999999985 567789999999875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=6.5e-31  Score=238.11  Aligned_cols=228  Identities=21%  Similarity=0.272  Sum_probs=202.0

Q ss_pred             eeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           12 TCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        12 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      +||++++.+++.+  +++++++.|.++++||+||+.++++|++|+....+.+   ..|.++|+|++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            4799999987765  8899999999999999999999999999998877754   3567899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+....                             .                  .|+|++|+.++.+.++++|+++
T Consensus        81 ~Gd~V~~~~~-----------------------------~------------------~g~~~~~v~v~~~~~~~lp~~~  113 (327)
T PRK10754         81 VGDRVVYAQS-----------------------------A------------------LGAYSSVHNVPADKAAILPDAI  113 (327)
T ss_pred             CCCEEEECCC-----------------------------C------------------CcceeeEEEcCHHHceeCCCCC
Confidence            9999964211                             0                  1389999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++++++.+++.+.++|.++.+..++.++++++|+|+ |.+|.+++++|+.+|+ ++++++.++++++.++++|++.+++.
T Consensus       114 ~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~  192 (327)
T PRK10754        114 SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINY  192 (327)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcC
Confidence            999999988899999998888889999999999975 9999999999999999 88999899999999999999888877


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.  .++.+.+++++.+ ++|++||++|+ ..+...++.++++|++
T Consensus       193 ~~--~~~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~  235 (327)
T PRK10754        193 RE--ENIVERVKEITGGKKVRVVYDSVGK-DTWEASLDCLQRRGLM  235 (327)
T ss_pred             CC--CcHHHHHHHHcCCCCeEEEEECCcH-HHHHHHHHHhccCCEE
Confidence            65  6788888888887 89999999998 5778899999999876

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=6.8e-31  Score=240.02  Aligned_cols=241  Identities=28%  Similarity=0.341  Sum_probs=195.5

Q ss_pred             eeEEEEecCCCC--eEEEE-eecCCCCCCcEEEEEeEeeCChhhhhhhcccC-----------------------CCCcc
Q 022819           13 CKAAVAWGAGQP--LVVEE-VEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-----------------------IFPRI   66 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~-~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----------------------~~p~~   66 (291)
                      ||++++.+++.+  +.+.+ .+.|.+.+++|+|||.++++|++|...+.|..                       ..|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            578888876643  55554 47778899999999999999999998876532                       35689


Q ss_pred             cCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCcc
Q 022819           67 FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVS  146 (291)
Q Consensus        67 ~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g  146 (291)
                      +|||++|+|+++|+++.+|++||+|++.+..+|+.|..|..     |   .+  .|.. .+                  |
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~---~~--~~~~-~~------------------g  131 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----I---DY--IGSE-RD------------------G  131 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----c---cc--cCCC-CC------------------c
Confidence            99999999999999999999999999988877877655321     1   11  1110 11                  4


Q ss_pred             ceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc
Q 022819          147 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD  225 (291)
Q Consensus       147 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~  225 (291)
                      +|++|+.++.+.++++|+++++.+++.+++.+.+||+++ +..++.++++++|+|+ |++|++++++|+.+|+ +++++.
T Consensus       132 ~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~  209 (350)
T cd08274         132 GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVA  209 (350)
T ss_pred             cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEe
Confidence            899999999999999999999999999999999999976 7788999999999997 9999999999999999 788887


Q ss_pred             CChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          226 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       226 ~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++ +++.++++|++.+++...  ....+  ...+.+ ++|++||++|+ ..+..++++++++|++
T Consensus       210 ~~~-~~~~~~~~g~~~~~~~~~--~~~~~--~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~  269 (350)
T cd08274         210 GAA-KEEAVRALGADTVILRDA--PLLAD--AKALGGEPVDVVADVVGG-PLFPDLLRLLRPGGRY  269 (350)
T ss_pred             Cch-hhHHHHhcCCeEEEeCCC--ccHHH--HHhhCCCCCcEEEecCCH-HHHHHHHHHhccCCEE
Confidence            655 888889999876555432  33333  444555 89999999998 5789999999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.98  E-value=4.3e-30  Score=232.68  Aligned_cols=227  Identities=23%  Similarity=0.359  Sum_probs=197.8

Q ss_pred             eeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCC
Q 022819           12 TCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        12 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      ||||+++.+++.+  +.+++.+.|.+.++||+|||.++++|+.|...+.+..    ..|.++|+|++|+|+++|+++.++
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            5899999988753  6777888888999999999999999999998887654    234689999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||+|+.+..                              +                  |+|++|+.++.+.++++|++
T Consensus        81 ~~Gd~V~~~~~------------------------------~------------------g~~~~~~~v~~~~~~~ip~~  112 (334)
T PTZ00354         81 KEGDRVMALLP------------------------------G------------------GGYAEYAVAHKGHVMHIPQG  112 (334)
T ss_pred             CCCCEEEEecC------------------------------C------------------CceeeEEEecHHHcEeCCCC
Confidence            99999965411                              1                  38999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      +++.+++.+.+.+.+||+++.+...+.++++++|+|+ |++|++++++|+.+|+ .++.+.+++++.+.++++|++.+++
T Consensus       113 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  191 (334)
T PTZ00354        113 YTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIR  191 (334)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence            9999999999999999999888889999999999986 9999999999999999 6677888999999999999988887


Q ss_pred             CCCCCch-HHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEP-VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~-~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ...  .+ +.+.+.+.+.+ ++|++||++++ ..+..++++++++|++
T Consensus       192 ~~~--~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~g~~  236 (334)
T PTZ00354        192 YPD--EEGFAPKVKKLTGEKGVNLVLDCVGG-SYLSETAEVLAVDGKW  236 (334)
T ss_pred             cCC--hhHHHHHHHHHhCCCCceEEEECCch-HHHHHHHHHhccCCeE
Confidence            754  33 77778887766 89999999987 6788999999999876

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.98  E-value=8.4e-31  Score=239.10  Aligned_cols=234  Identities=28%  Similarity=0.410  Sum_probs=200.0

Q ss_pred             eeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~-~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |+|+++..++ +.++++++|.|.|+++||+||+.++++|++|+....+..  ..|.++|+|++|+|+.+|++++.|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFIPSYPAILGCDFAGTVVEVGSGVTRFKVGD   80 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccccCCCceeeeeeeEEEEEeCCCcCcCCCCC
Confidence            6899999884 348899999999999999999999999999988775543  3577899999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      +|+......|+                     +.. .                  .|+|++|+.++.+.++++|++++++
T Consensus        81 ~V~~~~~~~~~---------------------~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~~~  120 (339)
T cd08249          81 RVAGFVHGGNP---------------------NDP-R------------------NGAFQEYVVADADLTAKIPDNISFE  120 (339)
T ss_pred             EEEEEeccccC---------------------CCC-C------------------CCcccceEEechhheEECCCCCCHH
Confidence            99876443211                     000 1                  2489999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCC----------CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 022819          170 KICLLSCGLSAGLGAAWNVADI----------SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~----------~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      +++.+++.+.+||+++.+..++          .++++++|+|+ |++|++++++|+.+|+ +++++. ++++.+.++++|
T Consensus       121 ~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g  198 (339)
T cd08249         121 EAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLG  198 (339)
T ss_pred             HceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcC
Confidence            9999999999999987766554          78999999987 8999999999999999 788776 568889999999


Q ss_pred             CceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhcc--Cccc
Q 022819          239 VTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD--VRSI  290 (291)
Q Consensus       239 ~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~--~G~i  290 (291)
                      ++.+++.+.  .++.+.+++++.+++|++||++|++..+..+++++++  +|++
T Consensus       199 ~~~v~~~~~--~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~  250 (339)
T cd08249         199 ADAVFDYHD--PDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKL  250 (339)
T ss_pred             CCEEEECCC--chHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEE
Confidence            988888765  6777788877766899999999986788999999999  8875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.4e-29  Score=229.34  Aligned_cols=248  Identities=27%  Similarity=0.355  Sum_probs=207.6

Q ss_pred             eeEEEEecCC--CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAG--QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~--~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+.+  +.+++++.+.|.++++|++||+.++++|++|+....+..    ..|.++|||++|+|+++|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            6899999664  348888888888999999999999999999999887654    2466899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+......|+.      +.++.|...  ...|.. .                  .|+|++|+.++.+.++++|+++
T Consensus        81 ~Gd~V~~~~~~~~~~------~~~~~~~~~--~~~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~  133 (336)
T cd08276          81 VGDRVVPTFFPNWLD------GPPTAEDEA--SALGGP-I------------------DGVLAEYVVLPEEGLVRAPDHL  133 (336)
T ss_pred             CCCEEEEeccccccc------ccccccccc--cccccc-c------------------CceeeeEEEecHHHeEECCCCC
Confidence            999999877655533      333344322  122211 1                  2489999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++.+++.+.+.+.+||+++.+...++++++++|+|+|++|++++++|+++|+ ++++++.++++++.++++|++.+++.+
T Consensus       134 ~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  212 (336)
T cd08276         134 SFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYR  212 (336)
T ss_pred             CHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCC
Confidence            9999999999999999998888899999999999889999999999999999 899999999999999999998888764


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      . ..++...+.+++.+ ++|+++|+++. ..+..++++++++|++
T Consensus       213 ~-~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~G~~  255 (336)
T cd08276         213 T-TPDWGEEVLKLTGGRGVDHVVEVGGP-GTLAQSIKAVAPGGVI  255 (336)
T ss_pred             c-ccCHHHHHHHHcCCCCCcEEEECCCh-HHHHHHHHhhcCCCEE
Confidence            2 14567778888876 89999999986 5788999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=5.8e-30  Score=224.49  Aligned_cols=223  Identities=33%  Similarity=0.511  Sum_probs=192.6

Q ss_pred             cEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccc
Q 022819           39 EIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE  114 (291)
Q Consensus        39 eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~  114 (291)
                      ||+|||.++++|+.|...+.+..    .+|.++|+|++|+|+++|+++..|++||+|+..+..+|+.|.+|..    .|.
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            68999999999999999887754    3578899999999999999999999999999999999999999986    565


Q ss_pred             cccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCC
Q 022819          115 VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKG  194 (291)
Q Consensus       115 ~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~  194 (291)
                      .....  +..                   ..|+|++|+.++.+.++++|+++++++++.++..+.+||+++.+...+.++
T Consensus        77 ~~~~~--~~~-------------------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~  135 (271)
T cd05188          77 GGGIL--GEG-------------------LDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPG  135 (271)
T ss_pred             CCCEe--ccc-------------------cCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCC
Confidence            55431  111                   124899999999999999999999999999999999999998777777999


Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD  273 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~  273 (291)
                      ++|+|+|+|++|++++++++.+|. +|+++++++++.+.++++|++.+++..+  .+..+.+. ...+ ++|+++++++.
T Consensus       136 ~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~-~~~~~~~d~vi~~~~~  211 (271)
T cd05188         136 DTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE--EDLEEELR-LTGGGGADVVIDAVGG  211 (271)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc--CCHHHHHH-HhcCCCCCEEEECCCC
Confidence            999999986699999999999998 9999999999999999999888887764  45555555 4444 89999999998


Q ss_pred             hHHHHHHHHhhccCccc
Q 022819          274 TGMITTALQSCCDVRSI  290 (291)
Q Consensus       274 ~~~~~~~~~~l~~~G~i  290 (291)
                      ......++++++++|++
T Consensus       212 ~~~~~~~~~~l~~~G~~  228 (271)
T cd05188         212 PETLAQALRLLRPGGRI  228 (271)
T ss_pred             HHHHHHHHHhcccCCEE
Confidence            66788999999999876

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.97  E-value=1.4e-29  Score=229.06  Aligned_cols=229  Identities=17%  Similarity=0.203  Sum_probs=189.5

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+++.+  +++++.|.|.|.++||+||+.++++|++|.....+..    .+|.++|||++|+|+++|  +.+|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            689999988764  8889999999999999999999999999986654221    348899999999999954  56799


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+.....                       .|.. .                  .|+|++|+.++.+.++++|+++
T Consensus        79 ~Gd~V~~~~~~-----------------------~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~  116 (326)
T cd08289          79 PGDEVIVTSYD-----------------------LGVS-H------------------HGGYSEYARVPAEWVVPLPKGL  116 (326)
T ss_pred             CCCEEEEcccc-----------------------cCCC-C------------------CCcceeEEEEcHHHeEECCCCC
Confidence            99999765321                       1110 1                  2499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcC---CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVAD---ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      ++++++.+++.+.|||.++....+   ..++++|+|+|+ |++|.+++|+|+.+|+ +|+++++++++.+.++++|++.+
T Consensus       117 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v  195 (326)
T cd08289         117 TLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEV  195 (326)
T ss_pred             CHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEE
Confidence            999999999999999987654332   345789999987 9999999999999999 89999999999999999999888


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.++  . ..+.+.+++.+++|++||++|+ ..+..++++++++|++
T Consensus       196 ~~~~~--~-~~~~~~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~  239 (326)
T cd08289         196 IPREE--L-QEESIKPLEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSV  239 (326)
T ss_pred             Ecchh--H-HHHHHHhhccCCcCEEEECCcH-HHHHHHHHHhhcCCEE
Confidence            88754  2 3455666654489999999998 6789999999999986

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.97  E-value=2e-29  Score=227.63  Aligned_cols=229  Identities=20%  Similarity=0.251  Sum_probs=190.0

Q ss_pred             eeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~--~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+++.  ++++++.|.|.++++||+||+.++++|++|+..+.|..    .+|.++|||++|+|+++  +++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            68999998875  69999999999999999999999999999998887764    24778999999999998  456799


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+.....                       .|.. .                  .|+|++|+.++.+.++++|+++
T Consensus        79 ~Gd~V~~~~~~-----------------------~g~~-~------------------~g~~~~~~~v~~~~~~~lp~~~  116 (325)
T cd05280          79 EGDEVLVTGYD-----------------------LGMN-T------------------DGGFAEYVRVPADWVVPLPEGL  116 (325)
T ss_pred             CCCEEEEcccc-----------------------cCCC-C------------------CceeEEEEEEchhhEEECCCCC
Confidence            99999765210                       1211 1                  1489999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCC--C-CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADI--S-KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~--~-~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      ++++++.+++.+.++|.++....+.  . .+++|+|+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|++.+
T Consensus       117 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~  195 (325)
T cd05280         117 SLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEV  195 (325)
T ss_pred             CHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEE
Confidence            9999999999999999987655433  5 4579999987 9999999999999999 79999999999999999999888


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.++  . .....+....+++|++||++|+ ..+..++++++++|++
T Consensus       196 ~~~~~--~-~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~  239 (325)
T cd05280         196 LDRED--L-LDESKKPLLKARWAGAIDTVGG-DVLANLLKQTKYGGVV  239 (325)
T ss_pred             Ecchh--H-HHHHHHHhcCCCccEEEECCch-HHHHHHHHhhcCCCEE
Confidence            87643  2 1222233333489999999998 5789999999999876

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.97  E-value=1.3e-29  Score=229.58  Aligned_cols=224  Identities=27%  Similarity=0.332  Sum_probs=194.5

Q ss_pred             eeeEEEEecCCC----CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCC
Q 022819           12 TCKAAVAWGAGQ----PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        12 ~~~a~~~~~~~~----~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      .||||++.+++.    ++++++++.|.+.++||+|||.++++|+.|+..+.|..    .+|.++|+|++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            379999998765    48899999999999999999999999999998877653    4577899999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      +|++||+|+...                               .                  |+|++|+.++.+.++++|
T Consensus        81 ~~~~Gd~V~~~~-------------------------------~------------------g~~~s~~~v~~~~~~~ip  111 (329)
T cd08250          81 DFKVGDAVATMS-------------------------------F------------------GAFAEYQVVPARHAVPVP  111 (329)
T ss_pred             CCCCCCEEEEec-------------------------------C------------------cceeEEEEechHHeEECC
Confidence            999999997541                               1                  389999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      ++  +.+++.++..+.+||+++.+..++.++++++|+|+ |.+|.+++++|+.+|+ .++++.+++++.+.++++|++.+
T Consensus       112 ~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v  188 (329)
T cd08250         112 EL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRP  188 (329)
T ss_pred             CC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceE
Confidence            97  35677888899999999888889999999999986 9999999999999999 88998889999999999998888


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.+.  .++.+.+....++++|++||++|+ ..+..++++++++|++
T Consensus       189 ~~~~~--~~~~~~~~~~~~~~vd~v~~~~g~-~~~~~~~~~l~~~g~~  233 (329)
T cd08250         189 INYKT--EDLGEVLKKEYPKGVDVVYESVGG-EMFDTCVDNLALKGRL  233 (329)
T ss_pred             EeCCC--ccHHHHHHHhcCCCCeEEEECCcH-HHHHHHHHHhccCCeE
Confidence            87654  556666666554589999999997 6789999999999875

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.97  E-value=1.9e-29  Score=227.71  Aligned_cols=227  Identities=23%  Similarity=0.315  Sum_probs=195.5

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      |||+++.+++.+  +.+.+.+.|.+.++||+||+.++++|+.|+..+.|..      ..|.++|||++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            588999876543  6677777777899999999999999999998887643      33578999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      +++||+|+.....                            .+                  |+|++|+.++.+.++++|+
T Consensus        81 ~~~Gd~V~~~~~~----------------------------~~------------------g~~~~~~~v~~~~~~~lp~  114 (324)
T cd08244          81 AWLGRRVVAHTGR----------------------------AG------------------GGYAELAVADVDSLHPVPD  114 (324)
T ss_pred             CCCCCEEEEccCC----------------------------CC------------------ceeeEEEEEchHHeEeCCC
Confidence            9999999765210                            11                  4899999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      ++++++++.+++.+.+|| ++.+..+++++++++|+|+ |++|.+++++|+.+|+ +++++++++++.+.++++|++.++
T Consensus       115 ~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  192 (324)
T cd08244         115 GLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAV  192 (324)
T ss_pred             CCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEE
Confidence            999999999999999995 5678889999999999985 9999999999999999 899999999999999999998888


Q ss_pred             CCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++  .++.+.+.+.+.+ ++|+++|++|+. ....++++++++|++
T Consensus       193 ~~~~--~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~  237 (324)
T cd08244         193 DYTR--PDWPDQVREALGGGGVTVVLDGVGGA-IGRAALALLAPGGRF  237 (324)
T ss_pred             ecCC--ccHHHHHHHHcCCCCceEEEECCChH-hHHHHHHHhccCcEE
Confidence            7765  6677778877776 899999999985 568899999998875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.97  E-value=3.8e-29  Score=227.12  Aligned_cols=229  Identities=23%  Similarity=0.229  Sum_probs=195.6

Q ss_pred             eeEEEEecCCCC-----eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCC
Q 022819           13 CKAAVAWGAGQP-----LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        13 ~~a~~~~~~~~~-----~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      |||+++.+++.+     ++.+++|.|.+.+++|+||+.++++|+.|+..+.+..   ..|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            578999988764     5666788888899999999999999999998877654   25678999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      |++||+|+.....                           ..+                  |+|++|+.++.+.++++|+
T Consensus        81 ~~~Gd~V~~~~~~---------------------------~~~------------------g~~~~~~~v~~~~~~~ip~  115 (336)
T cd08252          81 FKVGDEVYYAGDI---------------------------TRP------------------GSNAEYQLVDERIVGHKPK  115 (336)
T ss_pred             CCCCCEEEEcCCC---------------------------CCC------------------ccceEEEEEchHHeeeCCC
Confidence            9999999654110                           011                  4899999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCC-----CCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISK-----GSTVVIFGL-GTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~vlV~G~-g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~  237 (291)
                      ++++++++.+++.+.++|+++.+...+.+     +++|+|+|+ |++|++++++|+.+| + +++++++++++.++++++
T Consensus       116 ~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~  194 (336)
T cd08252         116 SLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKEL  194 (336)
T ss_pred             CCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhc
Confidence            99999999999999999998888888887     999999985 999999999999999 7 899999999999999999


Q ss_pred             CCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |++.+++.+.   ++...+.....+++|++||++|+...+..++++++++|++
T Consensus       195 g~~~~~~~~~---~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~  244 (336)
T cd08252         195 GADHVINHHQ---DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHI  244 (336)
T ss_pred             CCcEEEeCCc---cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEE
Confidence            9988887652   4555565443348999999999767899999999999876

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.97  E-value=1.9e-29  Score=230.41  Aligned_cols=226  Identities=24%  Similarity=0.303  Sum_probs=191.3

Q ss_pred             eeEEEEecCCCC---eEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhccc------------------CCCCcccCcc
Q 022819           13 CKAAVAWGAGQP---LVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQ------------------AIFPRIFGHE   70 (291)
Q Consensus        13 ~~a~~~~~~~~~---~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g~------------------~~~p~~~G~e   70 (291)
                      |||+++.++++|   +++++++.|.| +++||+||++++++|++|...+.|.                  ..+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            688999888876   89999999999 4999999999999999999887663                  1457799999


Q ss_pred             eeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceee
Q 022819           71 ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE  150 (291)
Q Consensus        71 ~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~  150 (291)
                      ++|+|+++|+++.+|++||||+..+..                          + .                  .|+|++
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~--------------------------~-~------------------~g~~~~  115 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP--------------------------W-S------------------QGTHAE  115 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC--------------------------C-C------------------Ccccee
Confidence            999999999999999999999765321                          0 1                  148999


Q ss_pred             EEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCC----CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc
Q 022819          151 YTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISK----GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD  225 (291)
Q Consensus       151 ~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~----~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~  225 (291)
                      |+.++.+.++++|+++++++++.+++.+.++|+++.+...+.+    +++++|+|+ |++|++++++|+.+|+ +++++.
T Consensus       116 ~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~  194 (350)
T cd08248         116 YVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTTC  194 (350)
T ss_pred             EEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence            9999999999999999999999999999999998877777654    999999986 9999999999999999 788776


Q ss_pred             CChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          226 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       226 ~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++ ++.+.++++|++.+++...  .++...+...  +++|++||++|++ .+..++++++++|++
T Consensus       195 ~~-~~~~~~~~~g~~~~~~~~~--~~~~~~l~~~--~~vd~vi~~~g~~-~~~~~~~~l~~~G~~  253 (350)
T cd08248         195 ST-DAIPLVKSLGADDVIDYNN--EDFEEELTER--GKFDVILDTVGGD-TEKWALKLLKKGGTY  253 (350)
T ss_pred             Cc-chHHHHHHhCCceEEECCC--hhHHHHHHhc--CCCCEEEECCChH-HHHHHHHHhccCCEE
Confidence            54 6788889999988887654  4444444331  3899999999985 789999999999986

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=6.6e-29  Score=223.29  Aligned_cols=228  Identities=27%  Similarity=0.381  Sum_probs=193.6

Q ss_pred             eeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           13 CKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        13 ~~a~~~~~~~~--~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      ||++++.+++.  .+.+.+.+.|.+.++||+||+.++++|+.|+..+.+..   ..|.++|||++|+|+++|+  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            57888887654  26777888888899999999999999999998887754   4467899999999999995  57999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      ||+|+.+...                       .|.. .                  .|+|++|+.++...++++|++++
T Consensus        79 Gd~V~~~~~~-----------------------~~~~-~------------------~g~~~~~~~~~~~~~~~ip~~~~  116 (320)
T cd08243          79 GQRVATAMGG-----------------------MGRT-F------------------DGSYAEYTLVPNEQVYAIDSDLS  116 (320)
T ss_pred             CCEEEEecCC-----------------------CCCC-C------------------CcccceEEEcCHHHcEeCCCCCC
Confidence            9999776321                       0000 1                  14899999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      +++++.+++++.+||+++.+...+.++++|+|+|+ |++|.+++|+|+.+|+ +|+++..++++.+.++++|++.+++. 
T Consensus       117 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-  194 (320)
T cd08243         117 WAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID-  194 (320)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-
Confidence            99999999999999999888888999999999987 9999999999999999 79999889999999999999887754 


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .  .++.+.+.++ ++++|++||++|+ ..+..++++++++|++
T Consensus       195 ~--~~~~~~i~~~-~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~  234 (320)
T cd08243         195 D--GAIAEQLRAA-PGGFDKVLELVGT-ATLKDSLRHLRPGGIV  234 (320)
T ss_pred             C--ccHHHHHHHh-CCCceEEEECCCh-HHHHHHHHHhccCCEE
Confidence            2  4566677777 4489999999998 6789999999999886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.97  E-value=8.2e-29  Score=223.88  Aligned_cols=227  Identities=20%  Similarity=0.232  Sum_probs=187.5

Q ss_pred             eEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        14 ~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      ||+++.+.+.|  ++++++|.|.+.++||+||+.++++|++|+..+.|..    ..|.++|||++|+|++  +++..|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            57888877664  7899999999999999999999999999998887754    3478899999999998  55678999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      ||+|+.....                       .|.. .                  .|+|++|+.++.+.++++|++++
T Consensus        79 Gd~V~~~~~~-----------------------~~~~-~------------------~g~~~~~~~~~~~~~~~iP~~~~  116 (323)
T TIGR02823        79 GDEVIVTGYG-----------------------LGVS-H------------------DGGYSQYARVPADWLVPLPEGLS  116 (323)
T ss_pred             CCEEEEccCC-----------------------CCCC-C------------------CccceEEEEEchhheEECCCCCC
Confidence            9999765321                       1110 1                  24899999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhh--cCCCCCC-EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          168 LEKICLLSCGLSAGLGAAWNV--ADISKGS-TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~--~~~~~~~-~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      +++++.+++.+.+++.++...  .++.+++ +|+|+|+ |++|.+++++|+.+|+ +++++..++++.+.++++|++.++
T Consensus       117 ~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~  195 (323)
T TIGR02823       117 LREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVI  195 (323)
T ss_pred             HHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEE
Confidence            999999999999998876443  3478898 9999987 9999999999999999 788887888888999999998888


Q ss_pred             CCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.++  .+.  .++.+..+++|.++|++|+. .+..++++++++|++
T Consensus       196 ~~~~--~~~--~~~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~  237 (323)
T TIGR02823       196 DRED--LSP--PGKPLEKERWAGAVDTVGGH-TLANVLAQLKYGGAV  237 (323)
T ss_pred             cccc--HHH--HHHHhcCCCceEEEECccHH-HHHHHHHHhCCCCEE
Confidence            7643  222  44455444799999999984 688999999999986

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.97  E-value=6.2e-29  Score=224.23  Aligned_cols=214  Identities=24%  Similarity=0.338  Sum_probs=189.7

Q ss_pred             eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCC
Q 022819           25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECK  100 (291)
Q Consensus        25 ~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~  100 (291)
                      +++++.|.|.+.+++|+||++++++|+.|...+.+..    .+|.++|+|++|+|+++|+++.++++||+|+..+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            6677888899999999999999999999998876654    34578999999999999999999999999976521    


Q ss_pred             CCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhhh
Q 022819          101 TCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA  180 (291)
Q Consensus       101 ~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~t  180 (291)
                                                +                  |+|++|+.++.+.++++|+++++.+++.+++.+.+
T Consensus        90 --------------------------~------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~t  125 (323)
T cd05282          90 --------------------------E------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLT  125 (323)
T ss_pred             --------------------------C------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHHH
Confidence                                      1                  38999999999999999999999999999999999


Q ss_pred             hHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHH
Q 022819          181 GLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       181 a~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~  259 (291)
                      +|+++.+...+.++++|+|+|+ |.+|++++++|+.+|+ .++++.+++++.+.++++|++.+++++.  .++...+.+.
T Consensus       126 a~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~  202 (323)
T cd05282         126 AWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP--EDLAQRVKEA  202 (323)
T ss_pred             HHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc--hhHHHHHHHH
Confidence            9999888888899999999987 8999999999999999 8888888899999999999998888865  5677788888


Q ss_pred             hcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          260 TDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+ ++|++||++|+. .....+++++++|++
T Consensus       203 ~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~  233 (323)
T cd05282         203 TGGAGARLALDAVGGE-SATRLARSLRPGGTL  233 (323)
T ss_pred             hcCCCceEEEECCCCH-HHHHHHHhhCCCCEE
Confidence            877 999999999985 467889999999876

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=3.4e-29  Score=227.49  Aligned_cols=225  Identities=28%  Similarity=0.391  Sum_probs=180.4

Q ss_pred             eeeEEEEecCCCC---eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCCCC-----
Q 022819           12 TCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVT-----   83 (291)
Q Consensus        12 ~~~a~~~~~~~~~---~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~~~-----   83 (291)
                      +++.+.+..+..+   ...++.++|.|.+++++|++.++++||.|+++..|....+. +|.++.|+|...|+++.     
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~-~~~~~p~ii~~~g~~~~~~~~~   82 (347)
T KOG1198|consen    4 KIRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIP-LGREFPGIIGRDGSGVVGAVES   82 (347)
T ss_pred             ccceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCC-CccCCCCccccccCCceeEEec
Confidence            4455555544333   55678999999999999999999999999999988872222 55555555555554432     


Q ss_pred             -------CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeec
Q 022819           84 -------EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS  156 (291)
Q Consensus        84 -------~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  156 (291)
                             .+..||++...                                                ...|+|+||..+|.
T Consensus        83 ~g~~~~~~~~~g~~~~~~------------------------------------------------~~~g~~aey~v~p~  114 (347)
T KOG1198|consen   83 VGDDVVGGWVHGDAVVAF------------------------------------------------LSSGGLAEYVVVPE  114 (347)
T ss_pred             cccccccceEeeeEEeec------------------------------------------------cCCCceeeEEEcch
Confidence                   23334333211                                                11259999999999


Q ss_pred             cceEECCCCCChhhhhhhhhhhhhhHhHHHhhc------CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          157 GCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA------DISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       157 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~------~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      ..++++|+++++++||+++..+.|||.++....      ++++++.|||+|+ |++|.+++|+|+..++ ..+++.++++
T Consensus       115 ~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e  193 (347)
T KOG1198|consen  115 KLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKE  193 (347)
T ss_pred             hhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccc
Confidence            999999999999999999999999999999999      9999999999976 8999999999999995 4555558999


Q ss_pred             hHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCcc
Q 022819          230 KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       230 ~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~  289 (291)
                      +.++++++|++.++||++  .++.+.++..+++++|+||||+|++ .+...+.++..+|+
T Consensus       194 ~~~l~k~lGAd~vvdy~~--~~~~e~~kk~~~~~~DvVlD~vg~~-~~~~~~~~l~~~g~  250 (347)
T KOG1198|consen  194 KLELVKKLGADEVVDYKD--ENVVELIKKYTGKGVDVVLDCVGGS-TLTKSLSCLLKGGG  250 (347)
T ss_pred             hHHHHHHcCCcEeecCCC--HHHHHHHHhhcCCCccEEEECCCCC-ccccchhhhccCCc
Confidence            999999999999999997  9999999998844999999999995 56666777766654

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=2.3e-28  Score=218.90  Aligned_cols=215  Identities=21%  Similarity=0.278  Sum_probs=183.3

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      ||++++.+.+ |  +++++.|.|.++++||+||+.++++|+.|.....+. ..|.++|+|++|+|+++|+++..|++||+
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~   78 (305)
T cd08270           1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-PDGAVPGWDAAGVVERAAADGSGPAVGAR   78 (305)
T ss_pred             CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-CCCCcccceeEEEEEEeCCCCCCCCCCCE
Confidence            5789888754 4  667788889999999999999999999999876532 45778999999999999999999999999


Q ss_pred             EEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhh
Q 022819           91 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK  170 (291)
Q Consensus        91 V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  170 (291)
                      |+....                              +                  |+|++|+.++.+.++++|+++++++
T Consensus        79 V~~~~~------------------------------~------------------g~~~~~~~v~~~~~~~ip~~~~~~~  110 (305)
T cd08270          79 VVGLGA------------------------------M------------------GAWAELVAVPTGWLAVLPDGVSFAQ  110 (305)
T ss_pred             EEEecC------------------------------C------------------cceeeEEEEchHHeEECCCCCCHHH
Confidence            965410                              1                  4899999999999999999999999


Q ss_pred             hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 022819          171 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       171 aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      ++.+++.+.+||+++...... ++++++|+|+ |++|.+++++|+.+|+ +++.+.+++++.+.++++|++..++...  
T Consensus       111 a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--  186 (305)
T cd08270         111 AATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVGGS--  186 (305)
T ss_pred             HHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEeccc--
Confidence            999999999999987666655 5999999987 9999999999999999 8999989999999999999876554321  


Q ss_pred             chHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       +       +..+++|+++|++|+. .+..++++++.+|++
T Consensus       187 -~-------~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~  218 (305)
T cd08270         187 -E-------LSGAPVDLVVDSVGGP-QLARALELLAPGGTV  218 (305)
T ss_pred             -c-------ccCCCceEEEECCCcH-HHHHHHHHhcCCCEE
Confidence             1       2224799999999984 789999999999886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.3e-28  Score=219.44  Aligned_cols=216  Identities=29%  Similarity=0.455  Sum_probs=184.6

Q ss_pred             cCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhh-cccC-----CCCcccCcceeEEEEEcCCCCCCCCCCCEEEe
Q 022819           20 GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW-ETQA-----IFPRIFGHEASGIVESVGPGVTEFNEGEHVLT   93 (291)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~-~g~~-----~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~   93 (291)
                      ++++ +++++++.|.+.++||+||+.++++|+.|...+ .+..     .+|.++|+|++|+|+++|+++.++++||+|+.
T Consensus         3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   81 (312)
T cd08269           3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG   81 (312)
T ss_pred             CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence            4443 899999999999999999999999999998887 6543     13678999999999999999999999999976


Q ss_pred             ecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhhhh
Q 022819           94 VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL  173 (291)
Q Consensus        94 ~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~  173 (291)
                      +..                                                 |+|++|+.++.+.++++|+++  ..++.
T Consensus        82 ~~~-------------------------------------------------g~~~~~~~v~~~~~~~lP~~~--~~~~~  110 (312)
T cd08269          82 LSG-------------------------------------------------GAFAEYDLADADHAVPLPSLL--DGQAF  110 (312)
T ss_pred             ecC-------------------------------------------------CcceeeEEEchhheEECCCch--hhhHH
Confidence            521                                                 389999999999999999998  23333


Q ss_pred             hhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHH
Q 022819          174 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ  253 (291)
Q Consensus       174 ~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~  253 (291)
                      ...++.++++++. ..+++++++++|+|+|.+|.+++++|+.+|++.++++.+++++.++++++|++.+++.+.  .++.
T Consensus       111 ~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~  187 (312)
T cd08269         111 PGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS--EAIV  187 (312)
T ss_pred             hhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC--cCHH
Confidence            2367788888765 888999999999988999999999999999943999988999999999999988887654  6788


Q ss_pred             HHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          254 QVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       254 ~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+.+++.+ ++|+++||+|....+..++++++++|++
T Consensus       188 ~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~  225 (312)
T cd08269         188 ERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRL  225 (312)
T ss_pred             HHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence            888888776 9999999998877889999999999876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.97  E-value=4.1e-28  Score=222.23  Aligned_cols=231  Identities=18%  Similarity=0.300  Sum_probs=189.3

Q ss_pred             eEEEEecCCCCeEEEEeecCCC---CCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCC-CC
Q 022819           14 KAAVAWGAGQPLVVEEVEVNPP---QPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVT-EF   85 (291)
Q Consensus        14 ~a~~~~~~~~~~~~~~~~~~~~---~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~-~~   85 (291)
                      |++++.+++.++++++++.|.|   .+++|+||+.++++|++|+..+.+..    ..|.++|+|++|+|+++|++++ .|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   81 (352)
T cd08247           2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW   81 (352)
T ss_pred             ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence            6899999988888888888776   89999999999999999988765432    1377899999999999999998 89


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc----ceEE
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG----CAVK  161 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~  161 (291)
                      ++||+|+......|+                                           ..|+|++|+.++..    .+++
T Consensus        82 ~~Gd~V~~~~~~~~~-------------------------------------------~~g~~~~~~~v~~~~~~~~~~~  118 (352)
T cd08247          82 KVGDEVCGIYPHPYG-------------------------------------------GQGTLSQYLLVDPKKDKKSITR  118 (352)
T ss_pred             CCCCEEEEeecCCCC-------------------------------------------CCceeeEEEEEccccccceeEE
Confidence            999999766332110                                           12489999999987    7899


Q ss_pred             CCCCCChhhhhhhhhhhhhhHhHHHhhc-CCCCCCEEEEEcC-ChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcC
Q 022819          162 VSSIAPLEKICLLSCGLSAGLGAAWNVA-DISKGSTVVIFGL-GTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       162 ip~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g  238 (291)
                      +|+++++++++.+++.+.+||+++.+.. +++++++++|+|+ |.+|.+++++|+.+|. +.++++. ++++.+.++++|
T Consensus       119 lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g  197 (352)
T cd08247         119 KPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLG  197 (352)
T ss_pred             CCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhC
Confidence            9999999999999999999999887777 7999999999987 7999999999999854 3677775 456666888999


Q ss_pred             CceEeCCCCCCch---HHHH-HHHHhcC-CccEEEEccCChHHHHHHHHhhc---cCccc
Q 022819          239 VTEFLNPNDNNEP---VQQV-IKRITDG-GADYSFECIGDTGMITTALQSCC---DVRSI  290 (291)
Q Consensus       239 ~~~~i~~~~~~~~---~~~~-~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~---~~G~i  290 (291)
                      ++.+++.++  .+   +... ++..+++ ++|++|||+|+......++++++   ++|++
T Consensus       198 ~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~  255 (352)
T cd08247         198 ADHFIDYDA--HSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHY  255 (352)
T ss_pred             CCEEEecCC--CcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEE
Confidence            988888754  33   3333 4444424 89999999998667888999999   88865

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.97  E-value=4.3e-28  Score=217.27  Aligned_cols=226  Identities=29%  Similarity=0.420  Sum_probs=196.1

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      ||++++.+++.+  +++++.+.|.+.+++|+||+.++++|+.|+..+.+..    ..|.++|||++|+|+++|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            689999886544  7777888888899999999999999999998876644    3568899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+.+..                              +                  |+|++|+.++.+.++++|+++
T Consensus        81 ~Gd~V~~~~~------------------------------~------------------g~~~~~~~~~~~~~~~~p~~~  112 (323)
T cd05276          81 VGDRVCALLA------------------------------G------------------GGYAEYVVVPAGQLLPVPEGL  112 (323)
T ss_pred             CCCEEEEecC------------------------------C------------------CceeEEEEcCHHHhccCCCCC
Confidence            9999965411                              1                  389999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++.+++.+...+.++|+++.+...+.++++++|+|+ |++|++++++++.+|+ .++++++++++++.++++|++.+++.
T Consensus       113 ~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  191 (323)
T cd05276         113 SLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINY  191 (323)
T ss_pred             CHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeC
Confidence            999999999999999999888888999999999986 8999999999999999 89999899999999999998888777


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ..  .++...+.+++.+ ++|++++++|+. .+..+++.++++|++
T Consensus       192 ~~--~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~~~~g~~  234 (323)
T cd05276         192 RT--EDFAEEVKEATGGRGVDVILDMVGGD-YLARNLRALAPDGRL  234 (323)
T ss_pred             Cc--hhHHHHHHHHhCCCCeEEEEECCchH-HHHHHHHhhccCCEE
Confidence            54  5677777777766 899999999984 478889999988875

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.96  E-value=2.2e-28  Score=211.02  Aligned_cols=211  Identities=22%  Similarity=0.284  Sum_probs=179.7

Q ss_pred             eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc--CCCCcccCcceeEEEEEc--CCCCCCCCCCCEEEeecccCCC
Q 022819           25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--AIFPRIFGHEASGIVESV--GPGVTEFNEGEHVLTVFIGECK  100 (291)
Q Consensus        25 ~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~--~~~p~~~G~e~~G~V~~v--G~~~~~~~~GdrV~~~~~~~~~  100 (291)
                      |+++|.++|+|+++|||+|+.+.+++|....-++..  +-.|.-+|-...|.++..  -|+..+|++||.|+..      
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~------  100 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV------  100 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec------
Confidence            999999999999999999999999999544322222  145666776655544332  2667889999999533      


Q ss_pred             CCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh--hhhhhhhhh
Q 022819          101 TCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE--KICLLSCGL  178 (291)
Q Consensus       101 ~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~--~aa~~~~~~  178 (291)
                                                                   .+|++|..++.+.+.|++++.-+.  ....+..+.
T Consensus       101 ---------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG  135 (340)
T COG2130         101 ---------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPG  135 (340)
T ss_pred             ---------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCCch
Confidence                                                         289999999999999998764333  333467788


Q ss_pred             hhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHH
Q 022819          179 SAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVI  256 (291)
Q Consensus       179 ~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i~~~~~~~~~~~~~  256 (291)
                      .|||.+|.+.++.++|++|+|.++ |++|..+.|+||.+|+ +||++..++||.+++++ +|.+.+|||+.  +++.+.+
T Consensus       136 ~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~--~d~~~~L  212 (340)
T COG2130         136 LTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA--EDFAQAL  212 (340)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc--ccHHHHH
Confidence            999999999999999999999976 9999999999999999 99999999999999987 99999999998  7999999


Q ss_pred             HHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.++.++|+.||++|+ +.+...+..|+..+||
T Consensus       213 ~~a~P~GIDvyfeNVGg-~v~DAv~~~ln~~aRi  245 (340)
T COG2130         213 KEACPKGIDVYFENVGG-EVLDAVLPLLNLFARI  245 (340)
T ss_pred             HHHCCCCeEEEEEcCCc-hHHHHHHHhhccccce
Confidence            99999999999999999 7899999999999986

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.96  E-value=6.3e-28  Score=216.57  Aligned_cols=231  Identities=25%  Similarity=0.338  Sum_probs=197.7

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      ||++++..++.+  +.+.++|.|.+.+++|+|++.++++|++|...+.|..    ..|.++|||++|+|+++|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            477888765543  7788999999999999999999999999998876643    4577899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+......                      .+   .                  .|++++|+.++.+.++++|+++
T Consensus        81 ~Gd~v~~~~~~~----------------------~~---~------------------~g~~~~~~~~~~~~~~~ip~~~  117 (325)
T cd08253          81 VGDRVWLTNLGW----------------------GR---R------------------QGTAAEYVVVPADQLVPLPDGV  117 (325)
T ss_pred             CCCEEEEecccc----------------------CC---C------------------CcceeeEEEecHHHcEeCCCCC
Confidence            999997764210                      00   1                  1489999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++.+++.+++.+.++|+.+.+..++.++++++|+|+ |.+|++++++++.+|+ +++++++++++.+.++++|++.+++.
T Consensus       118 ~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  196 (325)
T cd08253         118 SFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNY  196 (325)
T ss_pred             CHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence            999999999999999999888889999999999986 9999999999999999 89999999999999999999888876


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ..  .++...+.+++.+ ++|++++++++. .....++.++.+|++
T Consensus       197 ~~--~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~  239 (325)
T cd08253         197 RA--EDLADRILAATAGQGVDVIIEVLANV-NLAKDLDVLAPGGRI  239 (325)
T ss_pred             CC--cCHHHHHHHHcCCCceEEEEECCchH-HHHHHHHhhCCCCEE
Confidence            54  5677777777666 899999999984 567888999888875

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.96  E-value=7.8e-28  Score=217.91  Aligned_cols=221  Identities=20%  Similarity=0.214  Sum_probs=186.7

Q ss_pred             eeEEEEecCCC------CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCC
Q 022819           13 CKAAVAWGAGQ------PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGP   80 (291)
Q Consensus        13 ~~a~~~~~~~~------~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~   80 (291)
                      ++||++...++      .++++++|.|.+.+++|+||+.++++|+.|.....+..      ..+.++|+|++|+|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            57888876432      28899999999999999999999999998765554432      1245789999999999996


Q ss_pred             CCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeec-cce
Q 022819           81 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS-GCA  159 (291)
Q Consensus        81 ~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~  159 (291)
                      .  +|++||||+.+                                                   ++|++|+.++. +.+
T Consensus        82 ~--~~~~Gd~V~~~---------------------------------------------------~~~~~~~~v~~~~~~  108 (329)
T cd05288          82 P--DFKVGDLVSGF---------------------------------------------------LGWQEYAVVDGASGL  108 (329)
T ss_pred             C--CCCCCCEEecc---------------------------------------------------cceEEEEEecchhhc
Confidence            4  79999999532                                                   27999999999 999


Q ss_pred             EECCCCCC--hhhhhh-hhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          160 VKVSSIAP--LEKICL-LSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       160 ~~ip~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      +++|++++  +..++. +++.+.+||+++.+...+.++++|+|+|+ |++|++++|+|+.+|+ +++++++++++.+.++
T Consensus       109 ~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~  187 (329)
T cd05288         109 RKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLV  187 (329)
T ss_pred             EECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            99999995  545555 88899999999888888999999999985 9999999999999999 8999989999999998


Q ss_pred             H-cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          236 A-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       236 ~-~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      + +|++.++++++  .++.+.+.+.+.+++|++||++|+ ..+..++++++++|++
T Consensus       188 ~~~g~~~~~~~~~--~~~~~~v~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~  240 (329)
T cd05288         188 EELGFDAAINYKT--PDLAEALKEAAPDGIDVYFDNVGG-EILDAALTLLNKGGRI  240 (329)
T ss_pred             hhcCCceEEecCC--hhHHHHHHHhccCCceEEEEcchH-HHHHHHHHhcCCCceE
Confidence            8 99988888765  567777777775589999999998 6789999999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=1.1e-27  Score=214.23  Aligned_cols=225  Identities=30%  Similarity=0.390  Sum_probs=195.6

Q ss_pred             eEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        14 ~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      +|+.+..++.+  +.+.+.+.+.+.++||+|+|.++++|+.|.....+..  .+|.++|||++|+|+.+|+++.+|++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPLPFVLGVEGAGVVEAVGPGVTGFKVGD   80 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCCCCCccCCcceeEEEEEECCCCCCCCCCC
Confidence            46777666544  5667777777899999999999999999998887754  3567899999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      +|+....                                                .|+|++|+.++.+.++++|+++++.
T Consensus        81 ~V~~~~~------------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~  112 (320)
T cd05286          81 RVAYAGP------------------------------------------------PGAYAEYRVVPASRLVKLPDGISDE  112 (320)
T ss_pred             EEEEecC------------------------------------------------CCceeEEEEecHHHceeCCCCCCHH
Confidence            9976420                                                1389999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      +++.+.+.+.++|+++.+..++.++++|+|+|+ |++|.+++++++.+|+ .++++..++++.+.++++|++.+++... 
T Consensus       113 ~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~-  190 (320)
T cd05286         113 TAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRD-  190 (320)
T ss_pred             HHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCCc-
Confidence            999999899999999888889999999999985 9999999999999999 8999989999999999999988887654 


Q ss_pred             CchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       .++...+.+++.+ ++|++|+|+++ .....++++++++|++
T Consensus       191 -~~~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~  231 (320)
T cd05286         191 -EDFVERVREITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTL  231 (320)
T ss_pred             -hhHHHHHHHHcCCCCeeEEEECCCc-HhHHHHHHhhccCcEE
Confidence             6777788888776 89999999998 5788999999999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=9.5e-28  Score=215.92  Aligned_cols=229  Identities=26%  Similarity=0.370  Sum_probs=197.0

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+++.+  +.+++.+.|.+.+++|+|++.++++|++|.....+..    ..|.++|||++|+|+++|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            689999988765  7788888888999999999999999999998876653    2377899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+.....                         ...                  ..|+|++|+.++...++++|+++
T Consensus        81 ~Gd~V~~~~~~-------------------------~~~------------------~~g~~~~~~~v~~~~~~~~p~~~  117 (326)
T cd08272          81 VGDEVYGCAGG-------------------------LGG------------------LQGSLAEYAVVDARLLALKPANL  117 (326)
T ss_pred             CCCEEEEccCC-------------------------cCC------------------CCCceeEEEEecHHHcccCCCCC
Confidence            99999765210                         000                  12489999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++.+++.+++.+.+||+++.+..++.++++++|+|+ |++|++++++|+.+|+ +++++.++ ++.+.++++|++.+++.
T Consensus       118 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~  195 (326)
T cd08272         118 SMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYY  195 (326)
T ss_pred             CHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEec
Confidence            999999999999999998888899999999999985 9999999999999999 88888877 88899999998887776


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ..  . +...+.+++.+ ++|.++|++++ ..+..++++++++|++
T Consensus       196 ~~--~-~~~~~~~~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~g~~  237 (326)
T cd08272         196 RE--T-VVEYVAEHTGGRGFDVVFDTVGG-ETLDASFEAVALYGRV  237 (326)
T ss_pred             ch--h-HHHHHHHhcCCCCCcEEEECCCh-HHHHHHHHHhccCCEE
Confidence            54  4 77778888776 89999999998 4678899999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.7e-27  Score=214.57  Aligned_cols=228  Identities=28%  Similarity=0.365  Sum_probs=196.6

Q ss_pred             eeEEEEecCC--CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           13 CKAAVAWGAG--QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        13 ~~a~~~~~~~--~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      |||+++.+++  +.+.++++|.|++.+++|+||+.++++|++|+..+.+..   ..|.++|||++|+|+.+|+++..+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            6899999988  359999999999999999999999999999988776654   23678999999999999999999999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      ||+|+.....                          . .                  .|+|++|+.++.+.++++|++++
T Consensus        81 Gd~V~~~~~~--------------------------~-~------------------~~~~~s~~~~~~~~~~~ip~~~~  115 (325)
T cd08271          81 GDRVAYHASL--------------------------A-R------------------GGSFAEYTVVDARAVLPLPDSLS  115 (325)
T ss_pred             CCEEEeccCC--------------------------C-C------------------CccceeEEEeCHHHeEECCCCCC
Confidence            9999765320                          0 1                  13899999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      +.+++.+.+.+.++++++.+...+.++++++|+|+ |.+|++++++++.+|+ .++++. ++++.+.++++|++.+++..
T Consensus       116 ~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~  193 (325)
T cd08271         116 FEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYN  193 (325)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCC
Confidence            99999999999999999888889999999999987 7999999999999999 777775 67788888899998888765


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .  .++...+++++.+ ++|.+++++++. .....+++++++|++
T Consensus       194 ~--~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~G~~  235 (325)
T cd08271         194 D--EDVCERIKEITGGRGVDAVLDTVGGE-TAAALAPTLAFNGHL  235 (325)
T ss_pred             C--ccHHHHHHHHcCCCCCcEEEECCCcH-hHHHHHHhhccCCEE
Confidence            4  5677778877766 899999999985 456789999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.2e-27  Score=216.68  Aligned_cols=222  Identities=21%  Similarity=0.306  Sum_probs=189.1

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      +|||++.+.+.+  +++++.+.|.|.++||+||+.++++|+.|...+.+..    .+|.++|||++|+|+++|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (331)
T cd08273           1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE   80 (331)
T ss_pred             CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence            478999987654  8888899999999999999999999999998887654    3466899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+....                              .                  |+|++|+.++.+.++++|+++
T Consensus        81 ~Gd~V~~~~~------------------------------~------------------g~~~~~~~~~~~~~~~~p~~~  112 (331)
T cd08273          81 VGDRVAALTR------------------------------V------------------GGNAEYINLDAKYLVPVPEGV  112 (331)
T ss_pred             CCCEEEEeCC------------------------------C------------------cceeeEEEechHHeEECCCCC
Confidence            9999976521                              0                  389999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++++++.+++.+.+||+++.+...+.++++++|+|+ |++|++++++|+.+|+ +|+++.. +++.+.++++|+.. ++.
T Consensus       113 ~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~  189 (331)
T cd08273         113 DAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDY  189 (331)
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcC
Confidence            999999999999999999888888999999999987 9999999999999999 8888877 88899999999654 444


Q ss_pred             CCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ..  .++...  ....+++|+++|++|+.. +..++++++++|++
T Consensus       190 ~~--~~~~~~--~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~  229 (331)
T cd08273         190 RT--KDWLPA--MLTPGGVDVVFDGVGGES-YEESYAALAPGGTL  229 (331)
T ss_pred             CC--cchhhh--hccCCCceEEEECCchHH-HHHHHHHhcCCCEE
Confidence            32  333333  333358999999999854 88999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.96  E-value=2.7e-27  Score=213.96  Aligned_cols=228  Identities=14%  Similarity=0.194  Sum_probs=186.2

Q ss_pred             eeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~--~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+++.  .++++++|.|.|+++||+||+.++++|+.|...+.+..    .+|.++|||++|+|++  +++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            68999998775  38899999999999999999999999999998877653    3477899999999999  7777899


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+.....                       .|..                   ..|+|++|+.++.+.++++|+++
T Consensus        79 ~Gd~V~~~~~~-----------------------~~~~-------------------~~g~~~~~~~v~~~~~~~lp~~~  116 (324)
T cd08288          79 PGDRVVLTGWG-----------------------VGER-------------------HWGGYAQRARVKADWLVPLPEGL  116 (324)
T ss_pred             CCCEEEECCcc-----------------------CCCC-------------------CCCcceeEEEEchHHeeeCCCCC
Confidence            99999765211                       0000                   12489999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHH--hhcCCC-CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          167 PLEKICLLSCGLSAGLGAAW--NVADIS-KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~--~~~~~~-~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      ++++++.+++.+++++.++.  +..+.. ++++++|+|+ |++|.+++|+|+.+|+ +++++..++++.+.++++|++.+
T Consensus       117 ~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~  195 (324)
T cd08288         117 SARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEI  195 (324)
T ss_pred             CHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEE
Confidence            99999999999999887643  123444 6789999987 9999999999999999 88988889999999999999888


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++++    ....++.++.+++|.++|++++ ..+..++..++.+|++
T Consensus       196 ~~~~~----~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~g~~  238 (324)
T cd08288         196 IDRAE----LSEPGRPLQKERWAGAVDTVGG-HTLANVLAQTRYGGAV  238 (324)
T ss_pred             EEcch----hhHhhhhhccCcccEEEECCcH-HHHHHHHHHhcCCCEE
Confidence            88753    2224555555578999999997 4667778888877764

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1e-26  Score=209.24  Aligned_cols=231  Identities=27%  Similarity=0.400  Sum_probs=197.3

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      ||++++.+.+.+  +.+++.+.|.+.+++++|++.++++|+.|.....+..    ..|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            578888876543  6777888888999999999999999999988876654    2367899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+.++....                         ..                  .|++++|+.++.+.++++|+++
T Consensus        81 ~Gd~V~~~~~~~~-------------------------~~------------------~g~~~~~~~~~~~~~~~~p~~~  117 (328)
T cd08268          81 VGDRVSVIPAADL-------------------------GQ------------------YGTYAEYALVPAAAVVKLPDGL  117 (328)
T ss_pred             CCCEEEecccccc-------------------------CC------------------CccceEEEEechHhcEeCCCCC
Confidence            9999977633100                         01                  1489999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++++++.+.+.+.++|.++.+...+.++++++|+|+ |.+|++++++++..|+ .++.+++++++.+.++++|.+.+++.
T Consensus       118 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  196 (328)
T cd08268         118 SFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVT  196 (328)
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEec
Confidence            999999999999999999888889999999999987 9999999999999999 88999889999999988998888776


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.  .++...+.+.+.+ ++|++++++|+ .....++++++++|++
T Consensus       197 ~~--~~~~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~  239 (328)
T cd08268         197 DE--EDLVAEVLRITGGKGVDVVFDPVGG-PQFAKLADALAPGGTL  239 (328)
T ss_pred             CC--ccHHHHHHHHhCCCCceEEEECCch-HhHHHHHHhhccCCEE
Confidence            54  5677777777766 89999999998 5778889999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08251 polyketide_synthase polyketide synthase

Probab=99.95  E-value=1.5e-26  Score=205.99  Aligned_cols=208  Identities=28%  Similarity=0.392  Sum_probs=182.8

Q ss_pred             cCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccC
Q 022819           32 VNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKS  107 (291)
Q Consensus        32 ~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~  107 (291)
                      .|.+.+++|+||+.++++|+.|+..+.+.+    .+|.++|+|++|+|+++|+++.+|++||+|+.+...          
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~----------   71 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE----------   71 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence            577899999999999999999998887654    347789999999999999999999999999765221          


Q ss_pred             CCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHh
Q 022819          108 DKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN  187 (291)
Q Consensus       108 ~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~  187 (291)
                                        .                  .|+|++|+.++.+.++++|+++++++++.++..+.++|+++ +
T Consensus        72 ------------------~------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~  114 (303)
T cd08251          72 ------------------S------------------MGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-A  114 (303)
T ss_pred             ------------------C------------------CcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-H
Confidence                              1                  13899999999999999999999999999999999999986 5


Q ss_pred             hcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-Ccc
Q 022819          188 VADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GAD  265 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d  265 (291)
                      ..+++++++++|+++ |++|.+++|+++.+|+ +++++.+++++.+.++++|++.+++...  .++...+.+++.+ ++|
T Consensus       115 ~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~~~~~~d  191 (303)
T cd08251         115 RAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE--EDFEEEIMRLTGGRGVD  191 (303)
T ss_pred             hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHcCCCCce
Confidence            788999999999965 9999999999999999 8999999999999999999988888765  6677778888776 899


Q ss_pred             EEEEccCChHHHHHHHHhhccCccc
Q 022819          266 YSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++|++++ ..+..++++++++|++
T Consensus       192 ~v~~~~~~-~~~~~~~~~l~~~g~~  215 (303)
T cd08251         192 VVINTLSG-EAIQKGLNCLAPGGRY  215 (303)
T ss_pred             EEEECCcH-HHHHHHHHHhccCcEE
Confidence            99999976 6788889999998875

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.95  E-value=2.6e-26  Score=206.28  Aligned_cols=226  Identities=27%  Similarity=0.386  Sum_probs=194.0

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |+|+.+..++.+  +.+++.+.+.+.+++++||+.++++|+.|...+.+..    .+|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            578888776655  6666777777899999999999999999988876654    2457899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|+....                              +                  |+|++|+.++...++++|+++
T Consensus        81 ~Gd~V~~~~~------------------------------~------------------~~~~~~~~~~~~~~~~ip~~~  112 (325)
T TIGR02824        81 VGDRVCALVA------------------------------G------------------GGYAEYVAVPAGQVLPVPEGL  112 (325)
T ss_pred             CCCEEEEccC------------------------------C------------------CcceeEEEecHHHcEeCCCCC
Confidence            9999965411                              1                  389999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++..++.++..+.++|+++.+...+.++++++|+|+ |++|.+++++++.+|+ +++++.+++++.+.++++|++.+++.
T Consensus       113 ~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  191 (325)
T TIGR02824       113 SLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINY  191 (325)
T ss_pred             CHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEec
Confidence            999999999999999998888899999999999986 9999999999999999 88899888999999999998777766


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ..  .++...+.....+ ++|++++++|+ ..+..++++++++|++
T Consensus       192 ~~--~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~g~~  234 (325)
T TIGR02824       192 RE--EDFVEVVKAETGGKGVDVILDIVGG-SYLNRNIKALALDGRI  234 (325)
T ss_pred             Cc--hhHHHHHHHHcCCCCeEEEEECCch-HHHHHHHHhhccCcEE
Confidence            54  5667777777665 89999999997 4778899999998875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.95  E-value=4e-26  Score=203.64  Aligned_cols=224  Identities=26%  Similarity=0.391  Sum_probs=187.6

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      |+++++..++..  +.+++.+.|.++++||+||+.++++|+.|...+.+..      ..|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            578888877654  5567777788899999999999999999998876642      34788999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      +++||+|+.++..                        +   .+                  |+|++|+.++...++++|+
T Consensus        81 ~~~G~~V~~~~~~------------------------~---~~------------------g~~~~~~~~~~~~~~~~p~  115 (309)
T cd05289          81 FKVGDEVFGMTPF------------------------T---RG------------------GAYAEYVVVPADELALKPA  115 (309)
T ss_pred             CCCCCEEEEccCC------------------------C---CC------------------CcceeEEEecHHHhccCCC
Confidence            9999999765320                        0   01                  3899999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      ++++..++.+++.+.++++++.+...+.++++++|+|+ |.+|++++++++.+|+ +++++..++ +.+.++++|++..+
T Consensus       116 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~  193 (309)
T cd05289         116 NLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVI  193 (309)
T ss_pred             CCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEE
Confidence            99999999999999999998877777999999999987 9999999999999999 788887766 88888889987777


Q ss_pred             CCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +...  .++..    .+.+ ++|+++|++++. ....++++++++|++
T Consensus       194 ~~~~--~~~~~----~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~  234 (309)
T cd05289         194 DYTK--GDFER----AAAPGGVDAVLDTVGGE-TLARSLALVKPGGRL  234 (309)
T ss_pred             eCCC--Cchhh----ccCCCCceEEEECCchH-HHHHHHHHHhcCcEE
Confidence            6654  33322    3333 899999999985 788999999999875

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.95  E-value=1.3e-25  Score=201.32  Aligned_cols=225  Identities=31%  Similarity=0.464  Sum_probs=192.5

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCC-CCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQ-PEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~-~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      |+|+++..++.+  +.+.+.+ |.+. +++++|++.++++|+.|...+.+..    ..|.++|+|++|+|+.+|+++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            578888755433  6676776 6666 4999999999999999998877654    236689999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||+|+.+..                              .                  |++++|+.++.+.++++|++
T Consensus        80 ~~G~~V~~~~~------------------------------~------------------~~~~~~~~~~~~~~~~ip~~  111 (323)
T cd08241          80 KVGDRVVALTG------------------------------Q------------------GGFAEEVVVPAAAVFPLPDG  111 (323)
T ss_pred             CCCCEEEEecC------------------------------C------------------ceeEEEEEcCHHHceeCCCC
Confidence            99999976520                              1                  38999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++..+++.+...+.+||..+.+...+.++++++|+|+ |++|.+++++|+.+|+ .++.++.++++.+.++++|+...++
T Consensus       112 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  190 (323)
T cd08241         112 LSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVID  190 (323)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeee
Confidence            9999999898899999998877888999999999987 9999999999999999 7999989999999999999877777


Q ss_pred             CCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ...  .++.+.+...+.+ ++|.+++++|+ ..+..++++++++|++
T Consensus       191 ~~~--~~~~~~i~~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~g~~  234 (323)
T cd08241         191 YRD--PDLRERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWGGRL  234 (323)
T ss_pred             cCC--ccHHHHHHHHcCCCCcEEEEECccH-HHHHHHHHhhccCCEE
Confidence            654  6677788888776 89999999998 6778899999998875

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=2e-25  Score=202.00  Aligned_cols=224  Identities=23%  Similarity=0.351  Sum_probs=187.6

Q ss_pred             eEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           14 KAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        14 ~a~~~~~~~~--~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      +++++.+++.  .+.+.+.+.|.+.+++|+||+.++++|+.|...+.+..    ..|.++|||++|+|+.+|+++.+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4666666554  27777888888999999999999999999998887754    23668999999999999999999999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      ||+|+.+..                              +                  |+|++|+.++.+.++++|++++
T Consensus        81 G~~V~~~~~------------------------------~------------------~~~~~~~~~~~~~~~~ip~~~~  112 (337)
T cd08275          81 GDRVMGLTR------------------------------F------------------GGYAEVVNVPADQVFPLPDGMS  112 (337)
T ss_pred             CCEEEEecC------------------------------C------------------CeeeeEEEecHHHeEECCCCCC
Confidence            999976521                              0                  3899999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +.+++.+.+.+.++|+++.+..+++++++|+|+|+ |.+|++++++|+.+ +. .++.. ..+++.+.++++|++.+++.
T Consensus       113 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~  190 (337)
T cd08275         113 FEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVIDY  190 (337)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEeeC
Confidence            99999999999999999888889999999999987 99999999999999 43 33333 34567888888998888877


Q ss_pred             CCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.  .++...+++.+.+++|+++|++|+ .....++++++++|++
T Consensus       191 ~~--~~~~~~~~~~~~~~~d~v~~~~g~-~~~~~~~~~l~~~g~~  232 (337)
T cd08275         191 RT--QDYVEEVKKISPEGVDIVLDALGG-EDTRKSYDLLKPMGRL  232 (337)
T ss_pred             CC--CcHHHHHHHHhCCCceEEEECCcH-HHHHHHHHhhccCcEE
Confidence            65  667777877775589999999998 4678899999998875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.95  E-value=1.1e-25  Score=198.55  Aligned_cols=200  Identities=24%  Similarity=0.325  Sum_probs=177.6

Q ss_pred             CcEEEEEeEeeCChhhhhhhcccC-CCCcccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccc
Q 022819           38 EEIRIKVVCTSLCRSDITAWETQA-IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVL  116 (291)
Q Consensus        38 ~eVlVkv~~~~i~~~D~~~~~g~~-~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~  116 (291)
                      +||+||+.++++|++|+....+.. .+|.++|+|++|+|+++|+++..|++||+|+....                    
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~--------------------   60 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLPGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP--------------------   60 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCCCCCCccceeeeEEEEeecCCccCCCCCCEEEEEec--------------------
Confidence            589999999999999999887764 35789999999999999999999999999976521                    


Q ss_pred             cccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCE
Q 022819          117 GLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGST  196 (291)
Q Consensus       117 ~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  196 (291)
                                                   |+|++|+.++.+.++++|+++++.+++.+++.+.++|.++.+...++++++
T Consensus        61 -----------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~  111 (293)
T cd05195          61 -----------------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGES  111 (293)
T ss_pred             -----------------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCE
Confidence                                         389999999999999999999999999999999999999888889999999


Q ss_pred             EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC--CceEeCCCCCCchHHHHHHHHhcC-CccEEEEccC
Q 022819          197 VVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG--VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG  272 (291)
Q Consensus       197 vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g--~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g  272 (291)
                      ++|+|+ |++|++++++|+.+|+ +++++..++++.+.+++++  ++.+++...  .++.+.+.+.+.+ ++|.++|++|
T Consensus       112 vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~~  188 (293)
T cd05195         112 VLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD--LSFADGILRATGGRGVDVVLNSLS  188 (293)
T ss_pred             EEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc--hhHHHHHHHHhCCCCceEEEeCCC
Confidence            999975 9999999999999999 8999988889999998888  677777654  5677888888776 8999999999


Q ss_pred             ChHHHHHHHHhhccCccc
Q 022819          273 DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       273 ~~~~~~~~~~~l~~~G~i  290 (291)
                      +. .+..+++.++++|++
T Consensus       189 ~~-~~~~~~~~l~~~g~~  205 (293)
T cd05195         189 GE-LLRASWRCLAPFGRF  205 (293)
T ss_pred             ch-HHHHHHHhcccCceE
Confidence            85 889999999999875

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.4e-25  Score=201.54  Aligned_cols=213  Identities=26%  Similarity=0.331  Sum_probs=176.5

Q ss_pred             EEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCCCCCCCEEEeecccCC
Q 022819           26 VVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGEC   99 (291)
Q Consensus        26 ~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~   99 (291)
                      ++++.|.|.+.++||+|++.++++|+.|...+.|..      ..|.++|||++|+|+++|+++.++++||+|+.....  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            778899999999999999999999999998887754      246789999999999999999999999999765321  


Q ss_pred             CCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhh
Q 022819          100 KTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS  179 (291)
Q Consensus       100 ~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~  179 (291)
                                            +   .                  .|+|++|+.++.+.++++|+++++++++.+++.+.
T Consensus        93 ----------------------~---~------------------~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~  129 (319)
T cd08267          93 ----------------------K---G------------------GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGL  129 (319)
T ss_pred             ----------------------C---C------------------CceeeEEEEechhheEECCCCCCHHHHHhhhhHHH
Confidence                                  0   0                  13899999999999999999999999999999999


Q ss_pred             hhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHH
Q 022819          180 AGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       180 ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~  258 (291)
                      +||+++.+...+.++++++|+|+ |++|++++++|+.+|+ +++++..+ ++.+.++++|++.+++.+.  .++.   ..
T Consensus       130 ~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~--~~~~---~~  202 (319)
T cd08267         130 TALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT--EDFV---AL  202 (319)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC--CCcc---hh
Confidence            99999888888999999999987 9999999999999999 88888764 8888889999888887654  3332   33


Q ss_pred             HhcC-CccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          259 ITDG-GADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g-~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                      .+.+ ++|++++|+|+. ......+..++++|++
T Consensus       203 ~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~  236 (319)
T cd08267         203 TAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRY  236 (319)
T ss_pred             ccCCCCCcEEEECCCchHHHHHHhhhccCCCCEE
Confidence            4444 899999999852 2333444448888775

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>smart00829 PKS_ER Enoylreductase

Probab=99.94  E-value=5.4e-25  Score=194.04  Aligned_cols=196  Identities=22%  Similarity=0.341  Sum_probs=174.0

Q ss_pred             EEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCcccccccccc
Q 022819           42 IKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR  121 (291)
Q Consensus        42 Vkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~  121 (291)
                      ||+.++++|+.|...+.+....|.++|+|++|+|+++|+.++.|++||+|+...                          
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~--------------------------   55 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLPGEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA--------------------------   55 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCCCCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc--------------------------
Confidence            899999999999999888765578999999999999999999999999996541                          


Q ss_pred             ccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEc
Q 022819          122 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG  201 (291)
Q Consensus       122 g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G  201 (291)
                           +                  |+|++|+.++.+.++++|+++++++++.+.+.+.++|.++.+...+.++++|+|+|
T Consensus        56 -----~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g  112 (288)
T smart00829       56 -----P------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHA  112 (288)
T ss_pred             -----C------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEec
Confidence                 1                  38999999999999999999999999999999999999887888999999999998


Q ss_pred             C-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC--ceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHH
Q 022819          202 L-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMI  277 (291)
Q Consensus       202 ~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~--~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~  277 (291)
                      + |.+|++++++++.+|+ +++++++++++++.++++|+  +.++++..  .++.+.+.+.+.+ ++|.++|++++ ..+
T Consensus       113 ~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~~~-~~~  188 (288)
T smart00829      113 AAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD--LSFADEILRATGGRGVDVVLNSLAG-EFL  188 (288)
T ss_pred             CCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC--ccHHHHHHHHhCCCCcEEEEeCCCH-HHH
Confidence            5 9999999999999999 89999989999999999998  66777654  5677778777766 89999999996 678


Q ss_pred             HHHHHhhccCccc
Q 022819          278 TTALQSCCDVRSI  290 (291)
Q Consensus       278 ~~~~~~l~~~G~i  290 (291)
                      ..+++.++++|++
T Consensus       189 ~~~~~~l~~~g~~  201 (288)
T smart00829      189 DASLRCLAPGGRF  201 (288)
T ss_pred             HHHHHhccCCcEE
Confidence            8899999998875

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.89  E-value=1.2e-21  Score=173.49  Aligned_cols=166  Identities=32%  Similarity=0.419  Sum_probs=143.3

Q ss_pred             CCCcccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCcccc
Q 022819           62 IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYH  141 (291)
Q Consensus        62 ~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~  141 (291)
                      ++|.++|+|++|+|+++|+++++|++||+|+.+                                               
T Consensus        19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-----------------------------------------------   51 (277)
T cd08255          19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-----------------------------------------------   51 (277)
T ss_pred             cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------------
Confidence            678999999999999999999999999999654                                               


Q ss_pred             ccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeE
Q 022819          142 YCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRI  221 (291)
Q Consensus       142 ~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~v  221 (291)
                          +.|++|+.++.+.++++|+++++.+++.+ ..+.+||+++ ...+++++++++|+|+|++|++++++|+.+|+.+|
T Consensus        52 ----~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~v  125 (277)
T cd08255          52 ----GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREV  125 (277)
T ss_pred             ----CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcE
Confidence                26889999999999999999999999988 7899999986 57889999999999889999999999999999439


Q ss_pred             EEEcCChhhHHHHHHcC-CceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          222 IGVDTNPEKCEKAKAFG-VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       222 i~~~~~~~~~~~a~~~g-~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++++++++.++++++| ++.+++...          ..+.+ ++|++||+++....+..++++++++|++
T Consensus       126 i~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~  186 (277)
T cd08255         126 VGVDPDAARRELAEALGPADPVAADTA----------DEIGGRGADVVIEASGSPSALETALRLLRDRGRV  186 (277)
T ss_pred             EEECCCHHHHHHHHHcCCCccccccch----------hhhcCCCCCEEEEccCChHHHHHHHHHhcCCcEE
Confidence            99999999999999998 444443321          11233 8999999999877889999999999876

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.88  E-value=9.1e-21  Score=163.47  Aligned_cols=223  Identities=24%  Similarity=0.299  Sum_probs=173.2

Q ss_pred             eeeEEEEecC--CCC----eEEE--Eeec-CCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccC----cceeEE
Q 022819           12 TCKAAVAWGA--GQP----LVVE--EVEV-NPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFG----HEASGI   74 (291)
Q Consensus        12 ~~~a~~~~~~--~~~----~~~~--~~~~-~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G----~e~~G~   74 (291)
                      +++.|++-..  +-|    +.++  ++++ .++++++|+||.++-+.+|....-+....    -.|..+|    ..++|+
T Consensus         3 ~nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~k   82 (343)
T KOG1196|consen    3 TNKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAK   82 (343)
T ss_pred             cccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEE
Confidence            3466776652  222    4443  3443 45688899999999999987654332221    2334444    378899


Q ss_pred             EEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEe
Q 022819           75 VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV  154 (291)
Q Consensus        75 V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  154 (291)
                      |++  ++.++|++||.|                             +|+.                      +|.+|.++
T Consensus        83 Vi~--S~~~~~~~GD~v-----------------------------~g~~----------------------gWeeysii  109 (343)
T KOG1196|consen   83 VID--SGHPNYKKGDLV-----------------------------WGIV----------------------GWEEYSVI  109 (343)
T ss_pred             EEe--cCCCCCCcCceE-----------------------------EEec----------------------cceEEEEe
Confidence            999  567889999999                             4444                      79999998


Q ss_pred             ecc--ceEECCC--CCChhhhh-hhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          155 HSG--CAVKVSS--IAPLEKIC-LLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       155 ~~~--~~~~ip~--~~~~~~aa-~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      ++.  ..++|+.  ++++.... ++..+.+|||..+.+....++++||+|-|| |++|..+.|+|+.+|+ .||++..++
T Consensus       110 ~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~  188 (343)
T KOG1196|consen  110 TPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSK  188 (343)
T ss_pred             cCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCCh
Confidence            663  4445544  44443333 356788999999999999999999999986 9999999999999999 999999999


Q ss_pred             hhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          229 EKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       229 ~~~~~a~-~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ||.++++ ++|.+..+||++ +.+..+++++..+.++|+.||.+|+ .++...+..|+..|||
T Consensus       189 EKv~ll~~~~G~d~afNYK~-e~~~~~aL~r~~P~GIDiYfeNVGG-~~lDavl~nM~~~gri  249 (343)
T KOG1196|consen  189 EKVDLLKTKFGFDDAFNYKE-ESDLSAALKRCFPEGIDIYFENVGG-KMLDAVLLNMNLHGRI  249 (343)
T ss_pred             hhhhhhHhccCCccceeccC-ccCHHHHHHHhCCCcceEEEeccCc-HHHHHHHHhhhhccce
Confidence            9999887 579999999986 3488888998777799999999999 7899999999999986

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.87  E-value=4.1e-22  Score=152.52  Aligned_cols=105  Identities=38%  Similarity=0.653  Sum_probs=92.0

Q ss_pred             CCcEEEEEeEeeCChhhhhhhccc----CCCCcccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCc
Q 022819           37 PEEIRIKVVCTSLCRSDITAWETQ----AIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNT  112 (291)
Q Consensus        37 ~~eVlVkv~~~~i~~~D~~~~~g~----~~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~  112 (291)
                      |+||||||++++||++|++++.+.    ...|.++|||++|+|+++|+++++|++||||++.+...|+.|.+|..+.++.
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            689999999999999999999983    2889999999999999999999999999999999998999999999999999


Q ss_pred             cccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEEC
Q 022819          113 CEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  162 (291)
Q Consensus       113 c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  162 (291)
                      |+.......+   .+                  |+|++|+.++.++++|+
T Consensus        81 c~~~~~~g~~---~~------------------G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEVLGLG---LD------------------GGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEETTTS---ST------------------CSSBSEEEEEGGGEEEE
T ss_pred             CCCCCEeEcC---CC------------------CcccCeEEEehHHEEEC
Confidence            9887764443   33                  49999999999999975

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.82  E-value=6.5e-20  Score=179.49  Aligned_cols=204  Identities=21%  Similarity=0.193  Sum_probs=172.0

Q ss_pred             eEEEEeecC---CCCCCcEEEEEeEeeCChhhhhhhcccC----------CCCcccCcceeEEEEEcCCCCCCCCCCCEE
Q 022819           25 LVVEEVEVN---PPQPEEIRIKVVCTSLCRSDITAWETQA----------IFPRIFGHEASGIVESVGPGVTEFNEGEHV   91 (291)
Q Consensus        25 ~~~~~~~~~---~~~~~eVlVkv~~~~i~~~D~~~~~g~~----------~~p~~~G~e~~G~V~~vG~~~~~~~~GdrV   91 (291)
                      +++.|-|..   +..++.=+.-|-|+.||+.|+....|+.          ...+++|-|++||          .+-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence            445555543   3467788999999999999999988877          2346889999988          4559999


Q ss_pred             EeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhh
Q 022819           92 LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKI  171 (291)
Q Consensus        92 ~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a  171 (291)
                      .....                                                .-++++.+.++++++|.+|++..+++|
T Consensus      1499 M~mvp------------------------------------------------AksLATt~l~~rd~lWevP~~WTleeA 1530 (2376)
T KOG1202|consen 1499 MGMVP------------------------------------------------AKSLATTVLASRDFLWEVPSKWTLEEA 1530 (2376)
T ss_pred             EEeee------------------------------------------------hhhhhhhhhcchhhhhhCCcccchhhc
Confidence            54311                                                027889999999999999999999999


Q ss_pred             hhhhhhhhhhHhHHHhhcCCCCCCEEEEE-cCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCceEeCCC
Q 022819          172 CLLSCGLSAGLGAAWNVADISKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTEFLNPN  246 (291)
Q Consensus       172 a~~~~~~~ta~~~l~~~~~~~~~~~vlV~-G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~  246 (291)
                      ++.++.|+|+||+++.+.+.++|+++||+ |+|++|.+++.+|.+.|+ +|+.+..+.||++++.+.    -...+-|.+
T Consensus      1531 stVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSR 1609 (2376)
T KOG1202|consen 1531 STVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSR 1609 (2376)
T ss_pred             ccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhcccccc
Confidence            99999999999999999999999999999 569999999999999999 999999999999988653    223344554


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .+|-.-+.+.|.| |+|+|+++... +.++..++||+.+|||
T Consensus      1610 d--tsFEq~vl~~T~GrGVdlVLNSLae-EkLQASiRCLa~~GRF 1651 (2376)
T KOG1202|consen 1610 D--TSFEQHVLWHTKGRGVDLVLNSLAE-EKLQASIRCLALHGRF 1651 (2376)
T ss_pred             c--ccHHHHHHHHhcCCCeeeehhhhhH-HHHHHHHHHHHhcCee
Confidence            4  7888889999999 99999999887 6889999999999987

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.47  E-value=2.4e-13  Score=106.74  Aligned_cols=84  Identities=32%  Similarity=0.493  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHH
Q 022819          204 TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQ  282 (291)
Q Consensus       204 ~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~  282 (291)
                      ++|++++|+|+.+|+ +||+++++++|+++++++|++.++++++  .++.+++++++++ ++|+||||+|....++.+++
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~   77 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD--DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIK   77 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT--SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc--cccccccccccccccceEEEEecCcHHHHHHHHH
Confidence            589999999999996 9999999999999999999999999976  7799999999998 99999999998899999999


Q ss_pred             hhccCccc
Q 022819          283 SCCDVRSI  290 (291)
Q Consensus       283 ~l~~~G~i  290 (291)
                      +++++|++
T Consensus        78 ~l~~~G~~   85 (130)
T PF00107_consen   78 LLRPGGRI   85 (130)
T ss_dssp             HEEEEEEE
T ss_pred             HhccCCEE
Confidence            99999986

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.01  E-value=3.2e-09  Score=101.02  Aligned_cols=99  Identities=20%  Similarity=0.267  Sum_probs=78.8

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCC-----------CchHHHHHHH
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDN-----------NEPVQQVIKR  258 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~-----------~~~~~~~~~~  258 (291)
                      ..++++|+|+|+|++|+++++.|+.+|+ +|+++|.++++++.++++|++.+ ++..+.           ..++.+..++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            4679999999999999999999999999 89999999999999999999854 555321           1233333333


Q ss_pred             H-hc--CCccEEEEccCChH-----H-HHHHHHhhccCccc
Q 022819          259 I-TD--GGADYSFECIGDTG-----M-ITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~-~~--g~~d~vld~~g~~~-----~-~~~~~~~l~~~G~i  290 (291)
                      . ..  +++|+||+|++.+.     . .+++++.++++|+|
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvI  281 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVI  281 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEE
Confidence            2 33  37999999999633     5 49999999999986

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.63  E-value=3.4e-07  Score=85.19  Aligned_cols=94  Identities=22%  Similarity=0.330  Sum_probs=75.8

Q ss_pred             hHHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhc
Q 022819          183 GAAWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       183 ~~l~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      .++.+..+ .-+|++|+|+|+|++|+.+++.++.+|+ +|++++.++.|++.++++|+..+ +.       .+.+     
T Consensus       190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~~-------~e~v-----  255 (413)
T cd00401         190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-TM-------EEAV-----  255 (413)
T ss_pred             HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-cH-------HHHH-----
Confidence            33444444 3689999999999999999999999999 89999999999999999998432 11       1122     


Q ss_pred             CCccEEEEccCChHHHHHH-HHhhccCccc
Q 022819          262 GGADYSFECIGDTGMITTA-LQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g~~~~~~~~-~~~l~~~G~i  290 (291)
                      .++|+||+++|.+..+... ++.++++|++
T Consensus       256 ~~aDVVI~atG~~~~i~~~~l~~mk~Ggil  285 (413)
T cd00401         256 KEGDIFVTTTGNKDIITGEHFEQMKDGAIV  285 (413)
T ss_pred             cCCCEEEECCCCHHHHHHHHHhcCCCCcEE
Confidence            2589999999998888876 9999999876

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.39  E-value=2.4e-06  Score=81.41  Aligned_cols=98  Identities=20%  Similarity=0.273  Sum_probs=75.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCC-----------CCchHHHHHHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPND-----------NNEPVQQVIKRI  259 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~-----------~~~~~~~~~~~~  259 (291)
                      .++++++|+|+|.+|++++++++.+|+ .|++++.++++++.++++|+..+ ++..+           .++++.+..++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            467899999999999999999999999 79999999999999999998763 33211           113444443443


Q ss_pred             hc---CCccEEEEcc---CChH---HHHHHHHhhccCccc
Q 022819          260 TD---GGADYSFECI---GDTG---MITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~---g~~d~vld~~---g~~~---~~~~~~~~l~~~G~i  290 (291)
                      ..   .++|++|+|+   |.+.   ..++.++.+++|+.|
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvI  280 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVI  280 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEE
Confidence            33   3799999999   5433   678889999999865

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.23  E-value=1.3e-07  Score=88.90  Aligned_cols=159  Identities=16%  Similarity=0.178  Sum_probs=103.7

Q ss_pred             ccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCc
Q 022819           66 IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAV  145 (291)
Q Consensus        66 ~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~  145 (291)
                      .-|.|+++.+.+|++++.+     +|+..+.+ |+.|..|    +..|.........   .+                  
T Consensus        89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~~g~~---l~------------------  137 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKTVGKV---LE------------------  137 (417)
T ss_pred             cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCCchHH---HH------------------
Confidence            4688999999999998766     56666677 8888888    4556555442221   11                  


Q ss_pred             cceeeEEEeeccceEE---C-CCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeE
Q 022819          146 SSFSEYTVVHSGCAVK---V-SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRI  221 (291)
Q Consensus       146 g~~~~~~~~~~~~~~~---i-p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~v  221 (291)
                      +.|++++.++. .+..   | +..++...+|.-         ...+..+..++++++|+|+|.+|..+++.++..|+.+|
T Consensus       138 ~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~Av~---------la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V  207 (417)
T TIGR01035       138 RLFQKAFSVGK-RVRTETDISAGAVSISSAAVE---------LAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKI  207 (417)
T ss_pred             HHHHHHHHHhh-hhhhhcCCCCCCcCHHHHHHH---------HHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEE
Confidence            27888777765 3332   3 223333322211         01233334678999999999999999999999996689


Q ss_pred             EEEcCChhhHH-HHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChH
Q 022819          222 IGVDTNPEKCE-KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG  275 (291)
Q Consensus       222 i~~~~~~~~~~-~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~  275 (291)
                      ++++++.++.+ +++++|.. .+..    .+..+.+     .++|+||+|++.+.
T Consensus       208 ~v~~rs~~ra~~la~~~g~~-~i~~----~~l~~~l-----~~aDvVi~aT~s~~  252 (417)
T TIGR01035       208 LIANRTYERAEDLAKELGGE-AVKF----EDLEEYL-----AEADIVISSTGAPH  252 (417)
T ss_pred             EEEeCCHHHHHHHHHHcCCe-EeeH----HHHHHHH-----hhCCEEEECCCCCC
Confidence            99999888754 66777753 2222    2222222     25899999998754

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.14  E-value=2.8e-05  Score=72.78  Aligned_cols=95  Identities=23%  Similarity=0.334  Sum_probs=71.4

Q ss_pred             HhHHHhhcCCC-CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh
Q 022819          182 LGAAWNVADIS-KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       182 ~~~l~~~~~~~-~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~  260 (291)
                      |.++.+..++. .+++|+|+|.|.+|+.+++.++.+|+ +|+++++++.+...+...|+. +.+       +.+.+    
T Consensus       199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~~-------l~eal----  265 (425)
T PRK05476        199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VMT-------MEEAA----  265 (425)
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ecC-------HHHHH----
Confidence            44444443544 89999999999999999999999999 999999988887776666654 221       11111    


Q ss_pred             cCCccEEEEccCChHHHH-HHHHhhccCccc
Q 022819          261 DGGADYSFECIGDTGMIT-TALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~~~~~~-~~~~~l~~~G~i  290 (291)
                       .++|+|++++|....+. ..+..+++++.+
T Consensus       266 -~~aDVVI~aTG~~~vI~~~~~~~mK~Gail  295 (425)
T PRK05476        266 -ELGDIFVTATGNKDVITAEHMEAMKDGAIL  295 (425)
T ss_pred             -hCCCEEEECCCCHHHHHHHHHhcCCCCCEE
Confidence             26899999999877776 677888888754

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.12  E-value=8.8e-06  Score=73.59  Aligned_cols=109  Identities=23%  Similarity=0.250  Sum_probs=79.3

Q ss_pred             cceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCC---CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhH-H
Q 022819          157 GCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADI---SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC-E  232 (291)
Q Consensus       157 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~---~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~-~  232 (291)
                      +..+++|+.+..+.+.... +.+.++.++......   -++.+|+|+|+|.+|..+++.++..|...|++++++.++. +
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4677889999888877765 666777664333222   4789999999999999999999998877899999988765 6


Q ss_pred             HHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHH
Q 022819          233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGM  276 (291)
Q Consensus       233 ~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~  276 (291)
                      +++++|.. +++.    .++.+.+     ..+|+||.+++.+..
T Consensus       218 la~~~g~~-~~~~----~~~~~~l-----~~aDvVi~at~~~~~  251 (311)
T cd05213         218 LAKELGGN-AVPL----DELLELL-----NEADVVISATGAPHY  251 (311)
T ss_pred             HHHHcCCe-EEeH----HHHHHHH-----hcCCEEEECCCCCch
Confidence            77888873 3322    2222222     248999999998654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.04  E-value=5.1e-05  Score=70.62  Aligned_cols=92  Identities=22%  Similarity=0.340  Sum_probs=70.1

Q ss_pred             HHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCC
Q 022819          185 AWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       185 l~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      +.+..+ .-.+++|+|+|.|.+|+.+++.++.+|+ +|++++.++.+...++..|+. +.+       ..+.+     ..
T Consensus       185 i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~-------leeal-----~~  250 (406)
T TIGR00936       185 ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT-------MEEAA-----KI  250 (406)
T ss_pred             HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC-------HHHHH-----hc
Confidence            334334 3689999999999999999999999999 899998888887777777762 221       11122     25


Q ss_pred             ccEEEEccCChHHHHH-HHHhhccCccc
Q 022819          264 ADYSFECIGDTGMITT-ALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g~~~~~~~-~~~~l~~~G~i  290 (291)
                      .|++|+++|....++. .+..+++++.|
T Consensus       251 aDVVItaTG~~~vI~~~~~~~mK~Gail  278 (406)
T TIGR00936       251 GDIFITATGNKDVIRGEHFENMKDGAIV  278 (406)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCcEE
Confidence            7999999999887765 78888888764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=2.6e-05  Score=65.62  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceE-e
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF-L  243 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~-i  243 (291)
                      ...-++.-+...|.  +.+...++++++||-+|+| .|+.++.+|+..+  +|+.+++.++-.+.|    +++|...+ +
T Consensus        50 ~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v  124 (209)
T COG2518          50 GCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTV  124 (209)
T ss_pred             CCCceecCcHHHHH--HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEE
Confidence            33444444555554  5688899999999999987 7999999999988  899999988754444    55787443 3


Q ss_pred             CCCCCCchHHHHHHHHhc-CCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNNEPVQQVIKRITD-GGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~-g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ...|....       +.. +.||.|+-+.+.+.....++++|++||++
T Consensus       125 ~~gDG~~G-------~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrl  165 (209)
T COG2518         125 RHGDGSKG-------WPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRL  165 (209)
T ss_pred             EECCcccC-------CCCCCCcCEEEEeeccCCCCHHHHHhcccCCEE
Confidence            33332222       222 38999999888877889999999999986

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.96  E-value=0.00013  Score=65.56  Aligned_cols=87  Identities=22%  Similarity=0.341  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      .+++++|+|.|.+|+.+++.++.+|+ +|++++++.++.+.++++|+..+ ..    .++    .+.. ..+|+||++++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~----~~l----~~~l-~~aDiVI~t~p  219 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL----SEL----AEEV-GKIDIIFNTIP  219 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH----HHH----HHHh-CCCCEEEECCC
Confidence            68999999999999999999999999 99999999988888888886432 21    122    2221 26899999988


Q ss_pred             ChHHHHHHHHhhccCccc
Q 022819          273 DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       273 ~~~~~~~~~~~l~~~G~i  290 (291)
                      .....+..++.+++++.|
T Consensus       220 ~~~i~~~~l~~~~~g~vI  237 (296)
T PRK08306        220 ALVLTKEVLSKMPPEALI  237 (296)
T ss_pred             hhhhhHHHHHcCCCCcEE
Confidence            654456677778877643

>PLN02494 adenosylhomocysteinase

Probab=97.95  E-value=8.1e-05  Score=70.09  Aligned_cols=93  Identities=25%  Similarity=0.363  Sum_probs=71.6

Q ss_pred             HHHhhcCC-CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC
Q 022819          184 AAWNVADI-SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       184 ~l~~~~~~-~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ++.+..++ -.|++++|+|.|.+|+.+++.++.+|+ +|++++.++.+...+...|+.. .+       ..+.++     
T Consensus       243 ~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~v-v~-------leEal~-----  308 (477)
T PLN02494        243 GLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQV-LT-------LEDVVS-----  308 (477)
T ss_pred             HHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCee-cc-------HHHHHh-----
Confidence            34445444 579999999999999999999999999 8999998887777777777642 11       112222     


Q ss_pred             CccEEEEccCChHH-HHHHHHhhccCccc
Q 022819          263 GADYSFECIGDTGM-ITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~~~~-~~~~~~~l~~~G~i  290 (291)
                      .+|++++++|.... ....++.|++++.|
T Consensus       309 ~ADVVI~tTGt~~vI~~e~L~~MK~GAiL  337 (477)
T PLN02494        309 EADIFVTTTGNKDIIMVDHMRKMKNNAIV  337 (477)
T ss_pred             hCCEEEECCCCccchHHHHHhcCCCCCEE
Confidence            47999999998765 48899999999765

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.93  E-value=1.8e-05  Score=70.09  Aligned_cols=95  Identities=25%  Similarity=0.348  Sum_probs=67.6

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHH--h
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRI--T  260 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~-~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~--~  260 (291)
                      ...++++++||.+|+|+ |..++++++..|.. +|++++.+++.++.+++.    +...+....   .+    +.++  .
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~---~d----~~~l~~~  143 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL---GE----IEALPVA  143 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE---cc----hhhCCCC
Confidence            45678999999999987 88888888887752 799999999999988763    332211110   11    1222  2


Q ss_pred             cCCccEEEEcc------CChHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECI------GDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~------g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.||+|+...      .....++.+.+.|++||+|
T Consensus       144 ~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l  179 (272)
T PRK11873        144 DNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRF  179 (272)
T ss_pred             CCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEE
Confidence            34799888543      2356799999999999986

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.86  E-value=0.00023  Score=62.35  Aligned_cols=115  Identities=19%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             eccceEECCCCCChhhhhhhhhhhhhhHhHHHhh-cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 022819          155 HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV-ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK  233 (291)
Q Consensus       155 ~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~  233 (291)
                      +...++.+++++.+..+..-.    |.. ++... ....++++||.+|+|. |..++.+++ .|..+|+++|.++...+.
T Consensus        85 ~~~~~i~i~p~~afgtg~h~t----t~~-~l~~l~~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis~~~l~~  157 (250)
T PRK00517         85 PDEINIELDPGMAFGTGTHPT----TRL-CLEALEKLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDIDPQAVEA  157 (250)
T ss_pred             CCeEEEEECCCCccCCCCCHH----HHH-HHHHHHhhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECCHHHHHH
Confidence            556778899888877655322    221 12111 1256889999999986 877776554 677579999999998887


Q ss_pred             HHHc----CCceEeCCCCCCchHHHHHHHHhcC--CccEEEEccCCh---HHHHHHHHhhccCccc
Q 022819          234 AKAF----GVTEFLNPNDNNEPVQQVIKRITDG--GADYSFECIGDT---GMITTALQSCCDVRSI  290 (291)
Q Consensus       234 a~~~----g~~~~i~~~~~~~~~~~~~~~~~~g--~~d~vld~~g~~---~~~~~~~~~l~~~G~i  290 (291)
                      +++.    +....+.              +..+  .||+|+-+....   ..+..+.+.|+++|++
T Consensus       158 A~~n~~~~~~~~~~~--------------~~~~~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~l  209 (250)
T PRK00517        158 ARENAELNGVELNVY--------------LPQGDLKADVIVANILANPLLELAPDLARLLKPGGRL  209 (250)
T ss_pred             HHHHHHHcCCCceEE--------------EccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEE
Confidence            7652    2211010              0111  589998766542   3467788889999975

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.77  E-value=5e-05  Score=74.25  Aligned_cols=81  Identities=21%  Similarity=0.278  Sum_probs=59.6

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC---------------------hhhHHHHHHcCCceEeCCCCC
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN---------------------PEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~---------------------~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      ...++++|+|+|+|+.|+++++.++.+|+ +|++++..                     +.+++.++++|++..++....
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            35789999999999999999999999999 78888742                     356778888998877765321


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCChH
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGDTG  275 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~~~  275 (291)
                      .+-..+.+.    .++|+||+++|...
T Consensus       212 ~~~~~~~~~----~~~D~Vi~AtG~~~  234 (564)
T PRK12771        212 EDITLEQLE----GEFDAVFVAIGAQL  234 (564)
T ss_pred             CcCCHHHHH----hhCCEEEEeeCCCC
Confidence            111111221    26899999999754

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.67  E-value=0.00064  Score=64.26  Aligned_cols=92  Identities=25%  Similarity=0.395  Sum_probs=67.7

Q ss_pred             HHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCC
Q 022819          185 AWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       185 l~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      +.+..+ .-.|++++|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+.. .       ++.+.+     ..
T Consensus       244 ~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~-~-------~leell-----~~  309 (476)
T PTZ00075        244 IFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQV-V-------TLEDVV-----ET  309 (476)
T ss_pred             HHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCcee-c-------cHHHHH-----hc
Confidence            344433 3479999999999999999999999999 8999988777665555555431 1       122222     25


Q ss_pred             ccEEEEccCChHHHH-HHHHhhccCccc
Q 022819          264 ADYSFECIGDTGMIT-TALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g~~~~~~-~~~~~l~~~G~i  290 (291)
                      +|+|+.++|....+. ..++.|++++.|
T Consensus       310 ADIVI~atGt~~iI~~e~~~~MKpGAiL  337 (476)
T PTZ00075        310 ADIFVTATGNKDIITLEHMRRMKNNAIV  337 (476)
T ss_pred             CCEEEECCCcccccCHHHHhccCCCcEE
Confidence            899999999877764 888899998764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.62  E-value=0.00011  Score=69.28  Aligned_cols=89  Identities=21%  Similarity=0.301  Sum_probs=62.4

Q ss_pred             hhhhhHhHHHhhcC---CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcCCceEeCCCCCCchH
Q 022819          177 GLSAGLGAAWNVAD---ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVTEFLNPNDNNEPV  252 (291)
Q Consensus       177 ~~~ta~~~l~~~~~---~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~~g~~~~i~~~~~~~~~  252 (291)
                      +.+.++.++.....   -.++++|+|+|+|.+|..+++.++..|+..|+++.++.++.+ +++++|.. +++.    .+.
T Consensus       162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~----~~~  236 (423)
T PRK00045        162 AVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPL----DEL  236 (423)
T ss_pred             CcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeH----HHH
Confidence            44555555432222   257899999999999999999999999878999999888855 67777753 3322    122


Q ss_pred             HHHHHHHhcCCccEEEEccCChH
Q 022819          253 QQVIKRITDGGADYSFECIGDTG  275 (291)
Q Consensus       253 ~~~~~~~~~g~~d~vld~~g~~~  275 (291)
                      .+.+     ..+|+||++++.+.
T Consensus       237 ~~~l-----~~aDvVI~aT~s~~  254 (423)
T PRK00045        237 PEAL-----AEADIVISSTGAPH  254 (423)
T ss_pred             HHHh-----ccCCEEEECCCCCC
Confidence            1222     26899999999754

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.62  E-value=0.0003  Score=65.17  Aligned_cols=91  Identities=20%  Similarity=0.195  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++++++.++.+.+. .++......... ..+    +.+.. ..+|++++++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~-~~~----l~~~l-~~aDvVI~a~  238 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN-AYE----IEDAV-KRADLLIGAV  238 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC-HHH----HHHHH-ccCCEEEEcc
Confidence            34569999999999999999999999 8999999988877665 455432222221 122    22222 2689999997


Q ss_pred             C---C--hH-HHHHHHHhhccCccc
Q 022819          272 G---D--TG-MITTALQSCCDVRSI  290 (291)
Q Consensus       272 g---~--~~-~~~~~~~~l~~~G~i  290 (291)
                      +   .  +. ..++.++.+++++.|
T Consensus       239 ~~~g~~~p~lit~~~l~~mk~g~vI  263 (370)
T TIGR00518       239 LIPGAKAPKLVSNSLVAQMKPGAVI  263 (370)
T ss_pred             ccCCCCCCcCcCHHHHhcCCCCCEE
Confidence            3   2  21 236777778877654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.45  E-value=0.00099  Score=57.28  Aligned_cols=79  Identities=22%  Similarity=0.329  Sum_probs=60.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC----ceEeCCCCCCchHHHHHHHHhcC--Cc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV----TEFLNPNDNNEPVQQVIKRITDG--GA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~----~~~i~~~~~~~~~~~~~~~~~~g--~~  264 (291)
                      +++.++|.|+ +++|.++++.+...|+ +|+.++++.++++.+ .+++.    ...+|..+ .......+..+...  .+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD-~~~~~~~i~~~~~~~g~i   82 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD-RAAVEAAIEALPEEFGRI   82 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC-HHHHHHHHHHHHHhhCcc
Confidence            4578899998 8999999999999999 999999999998866 46772    22455554 23444455555444  79


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+.+++.|.
T Consensus        83 DiLvNNAGl   91 (246)
T COG4221          83 DILVNNAGL   91 (246)
T ss_pred             cEEEecCCC
Confidence            999999886

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.44  E-value=0.0012  Score=59.04  Aligned_cols=85  Identities=18%  Similarity=0.310  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      .+++++|+|.|.+|.+++..++.+|+ +|+++++++++.+.+.++|... +..    .++.+.+     ..+|+|+++++
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~-~~~----~~l~~~l-----~~aDiVint~P  218 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIP-FPL----NKLEEKV-----AEIDIVINTIP  218 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-ecH----HHHHHHh-----ccCCEEEECCC
Confidence            57899999999999999999999999 9999999988877777766432 111    1222222     25899999987


Q ss_pred             ChHHHHHHHHhhccCc
Q 022819          273 DTGMITTALQSCCDVR  288 (291)
Q Consensus       273 ~~~~~~~~~~~l~~~G  288 (291)
                      ..-.-...++.++++.
T Consensus       219 ~~ii~~~~l~~~k~~a  234 (287)
T TIGR02853       219 ALVLTADVLSKLPKHA  234 (287)
T ss_pred             hHHhCHHHHhcCCCCe
Confidence            5322344556666543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.40  E-value=0.00089  Score=52.89  Aligned_cols=74  Identities=27%  Similarity=0.403  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCc--eEeCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT--EFLNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~--~~i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      -++++++|+|+|++|.+++..+..+|+++|+.+.|+.+|.+.+ ++++..  ..+.++    ++.+.+.     .+|+|+
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~----~~~~~~~-----~~DivI   80 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE----DLEEALQ-----EADIVI   80 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG----GHCHHHH-----TESEEE
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH----HHHHHHh-----hCCeEE
Confidence            3688999999999999999999999998899999998886655 455322  234442    2222222     589999


Q ss_pred             EccCCh
Q 022819          269 ECIGDT  274 (291)
Q Consensus       269 d~~g~~  274 (291)
                      .+++..
T Consensus        81 ~aT~~~   86 (135)
T PF01488_consen   81 NATPSG   86 (135)
T ss_dssp             E-SSTT
T ss_pred             EecCCC
Confidence            998874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08324 short chain dehydrogenase; Validated

Probab=97.37  E-value=0.0012  Score=66.17  Aligned_cols=113  Identities=22%  Similarity=0.278  Sum_probs=71.7

Q ss_pred             ceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc
Q 022819          147 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD  225 (291)
Q Consensus       147 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~  225 (291)
                      ++++|..++...++.+ +..+.+++.....          ......+++++||+|+ |++|+.+++.+...|+ +|+.++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            4566777776666666 5566566542110          0112236789999986 9999999999999999 899999


Q ss_pred             CChhhHHHHH-HcCC--c-e--EeCCCCCCchHHHHHHHHh--cCCccEEEEccC
Q 022819          226 TNPEKCEKAK-AFGV--T-E--FLNPNDNNEPVQQVIKRIT--DGGADYSFECIG  272 (291)
Q Consensus       226 ~~~~~~~~a~-~~g~--~-~--~i~~~~~~~~~~~~~~~~~--~g~~d~vld~~g  272 (291)
                      ++.++.+.+. +++.  . .  ..|..+ .......+.+..  .+++|++|++.|
T Consensus       454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd-~~~v~~~~~~~~~~~g~iDvvI~~AG  507 (681)
T PRK08324        454 LDEEAAEAAAAELGGPDRALGVACDVTD-EAAVQAAFEEAALAFGGVDIVVSNAG  507 (681)
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            9888766543 3432  1 1  224332 123333333322  247999999998

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.35  E-value=0.0095  Score=53.48  Aligned_cols=127  Identities=15%  Similarity=0.181  Sum_probs=77.7

Q ss_pred             ceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcC---CCCCCEEEEEcC-ChHHHHHHHHHH-HcCCCeE
Q 022819          147 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD---ISKGSTVVIFGL-GTVGLSVAQGAK-ARGASRI  221 (291)
Q Consensus       147 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlV~G~-g~~G~~~i~~a~-~~g~~~v  221 (291)
                      .|-+|.++..+...  .+.....++.+-+ -+.|+|.. .+...   .-..+.|||.++ +-.++.++..++ ..+..++
T Consensus        90 ~YN~Y~r~~~d~~y--~~~~e~~~~LlrP-Lf~Tsfll-~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~  165 (314)
T PF11017_consen   90 IYNQYLRVSADPAY--DPEREDWQMLLRP-LFITSFLL-DDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV  165 (314)
T ss_pred             hhhceeecCCCccc--CcchhHHHHHHHH-HHHHHHHH-HHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence            45566666544433  1122223333334 56677753 33322   334566777776 777777777777 5555599


Q ss_pred             EEEcCChhhHHHHHHcCC-ceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhcc
Q 022819          222 IGVDTNPEKCEKAKAFGV-TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD  286 (291)
Q Consensus       222 i~~~~~~~~~~~a~~~g~-~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~  286 (291)
                      |++ ++..+.+..+.+|. +.++.|++        |.++....--+++|+.|.......+-+.+++
T Consensus       166 vgl-TS~~N~~Fve~lg~Yd~V~~Yd~--------i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d  222 (314)
T PF11017_consen  166 VGL-TSARNVAFVESLGCYDEVLTYDD--------IDSLDAPQPVVIVDFAGNGEVLAALHEHLGD  222 (314)
T ss_pred             EEE-ecCcchhhhhccCCceEEeehhh--------hhhccCCCCEEEEECCCCHHHHHHHHHHHhh
Confidence            999 46667778888885 66777754        3443334556899999997776666665543

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.34  E-value=0.0012  Score=61.38  Aligned_cols=102  Identities=16%  Similarity=0.129  Sum_probs=70.7

Q ss_pred             hhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHH
Q 022819          180 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       180 ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~  259 (291)
                      ..+..+.+..+++++++||.+|+| .|..+..+++..|+ +|++++.+++.++.+++......+....  .++.    ++
T Consensus       154 ~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~--~D~~----~l  225 (383)
T PRK11705        154 AKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL--QDYR----DL  225 (383)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE--Cchh----hc
Confidence            344445677788999999999986 67777888888898 9999999999999988643211111110  1221    11


Q ss_pred             hcCCccEEEE-----ccCC---hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFE-----CIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld-----~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                       .+.+|.|+.     .+|.   +..++.+.+.|+++|++
T Consensus       226 -~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~l  263 (383)
T PRK11705        226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLF  263 (383)
T ss_pred             -CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEE
Confidence             347898764     3343   35688899999999975

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.33  E-value=0.00091  Score=59.82  Aligned_cols=91  Identities=20%  Similarity=0.222  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHHHhcCCcc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~-~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      ..++++||-+|+|. |..++.+++ +|..+|++++.++...+.+++.    +... +....   .+    +.....+.||
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~---~~----~~~~~~~~fD  227 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL---IY----LEQPIEGKAD  227 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe---cc----cccccCCCce
Confidence            45789999999986 777776665 5766999999999888877652    2211 11111   11    1112234799


Q ss_pred             EEEEccCCh---HHHHHHHHhhccCccc
Q 022819          266 YSFECIGDT---GMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~~---~~~~~~~~~l~~~G~i  290 (291)
                      +|+......   ..+..+.+.|+++|.+
T Consensus       228 lVvan~~~~~l~~ll~~~~~~LkpgG~l  255 (288)
T TIGR00406       228 VIVANILAEVIKELYPQFSRLVKPGGWL  255 (288)
T ss_pred             EEEEecCHHHHHHHHHHHHHHcCCCcEE
Confidence            998765442   4567778999999976

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.27  E-value=0.0022  Score=54.01  Aligned_cols=99  Identities=18%  Similarity=0.281  Sum_probs=68.0

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCC-ceEeCCCCCCchHHHHHHHHh
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGV-TEFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~-~~~i~~~~~~~~~~~~~~~~~  260 (291)
                      ...++.++++|+.+|+|. |..++.+++.++. .+|++++.+++.++.+++    ++. +.+....   .+..+.+... 
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~---~d~~~~l~~~-  108 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK---GEAPEILFTI-  108 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE---echhhhHhhc-
Confidence            446788999999999987 8888899887642 389999999998887643    552 2222111   1222222221 


Q ss_pred             cCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      .+.+|.||...+.   ...++.+.+.|+++|++
T Consensus       109 ~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~l  141 (198)
T PRK00377        109 NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRI  141 (198)
T ss_pred             CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEE
Confidence            2379999985543   45688889999999985

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.23  E-value=0.0026  Score=57.71  Aligned_cols=100  Identities=18%  Similarity=0.203  Sum_probs=70.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~  259 (291)
                      +.+..+++++++||.+|+| .|..++.+++..+. ..|++++.+++..+.+++    .|.+.+....   .+..+.+.. 
T Consensus        72 ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~---gD~~~~~~~-  146 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC---GDGYYGVPE-  146 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---CChhhcccc-
Confidence            3455678899999999997 59999999998763 269999999987766654    5654432221   122111111 


Q ss_pred             hcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       .+.+|+|+.+.+.+.......+.|+++|++
T Consensus       147 -~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~L  176 (322)
T PRK13943        147 -FAPYDVIFVTVGVDEVPETWFTQLKEGGRV  176 (322)
T ss_pred             -cCCccEEEECCchHHhHHHHHHhcCCCCEE
Confidence             136999999888766777889999999985

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.21  E-value=0.0032  Score=52.07  Aligned_cols=98  Identities=17%  Similarity=0.203  Sum_probs=67.2

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHHhcC
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ...++++++.++-+|+| .|..++++++..-..+|++++++++..++.    ++||.+.+.....   +..+.+..+.  
T Consensus        28 s~L~~~~g~~l~DIGaG-tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g---~Ap~~L~~~~--  101 (187)
T COG2242          28 SKLRPRPGDRLWDIGAG-TGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG---DAPEALPDLP--  101 (187)
T ss_pred             HhhCCCCCCEEEEeCCC-ccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec---cchHhhcCCC--
Confidence            45678999988888885 466677888544344999999999988766    4588765433322   2222333221  


Q ss_pred             CccEEEEccCC--hHHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGD--TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~--~~~~~~~~~~l~~~G~i  290 (291)
                      .+|.+|-.=|.  +..++.++..|+++|+|
T Consensus       102 ~~daiFIGGg~~i~~ile~~~~~l~~ggrl  131 (187)
T COG2242         102 SPDAIFIGGGGNIEEILEAAWERLKPGGRL  131 (187)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHcCcCCeE
Confidence            58988853332  56799999999999986

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.96  E-value=0.011  Score=49.26  Aligned_cols=97  Identities=23%  Similarity=0.184  Sum_probs=60.8

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcC-Ccc
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDG-GAD  265 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g-~~d  265 (291)
                      ...+.++++||.+|+|+-+.+.....+..+..+|++++.++..    +..++..+ .|..+  ....+.+.+.... ++|
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~--~~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD--EEVLNKIRERVGDDKVD  100 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC--hhHHHHHHHHhCCCCcc
Confidence            3456899999999987666544444444444489999998754    11233221 13222  3334455554544 899


Q ss_pred             EEEEcc-----CC------------hHHHHHHHHhhccCccc
Q 022819          266 YSFECI-----GD------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~-----g~------------~~~~~~~~~~l~~~G~i  290 (291)
                      +|+...     |.            ...+..+.+.|+++|++
T Consensus       101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  142 (188)
T TIGR00438       101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNF  142 (188)
T ss_pred             EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEE
Confidence            999521     21            35688889999999986

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.95  E-value=0.0086  Score=45.67  Aligned_cols=98  Identities=15%  Similarity=0.228  Sum_probs=65.0

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~  259 (291)
                      .....+.++++++-+|+|. |..+..+++..+..++++++.++...+.+++    ++...  ++..+.  ..   .+.. 
T Consensus        12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~~---~~~~-   84 (124)
T TIGR02469        12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA--PE---ALED-   84 (124)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc--cc---cChh-
Confidence            3445667788999999875 8888888887653489999999988877653    34332  221111  11   0111 


Q ss_pred             hcCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      ....+|+|+-..+.   ...++.+.+.|+++|++
T Consensus        85 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l  118 (124)
T TIGR02469        85 SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRI  118 (124)
T ss_pred             hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEE
Confidence            12379998865433   34788999999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0079  Score=53.14  Aligned_cols=79  Identities=19%  Similarity=0.316  Sum_probs=55.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHH---HhcCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKR---ITDGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~---~~~g~~d~v  267 (291)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++++.+.+.+...+ .|..+ ..++...+.+   ...+.+|++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~g~id~l   80 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE-PESIAALVAQVLELSGGRLDAL   80 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC-HHHHHHHHHHHHHHcCCCccEE
Confidence            3578999987 9999999999888999 99999999888877766655432 34433 1223233332   233579999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +.+.|.
T Consensus        81 i~~Ag~   86 (277)
T PRK05993         81 FNNGAY   86 (277)
T ss_pred             EECCCc
Confidence            998763

>PRK04148 hypothetical protein; Provisional

Probab=96.90  E-value=0.013  Score=46.06  Aligned_cols=51  Identities=33%  Similarity=0.529  Sum_probs=41.5

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      ..++.+++++|.| .|..++..+..+|. .|+++|.+++..+.+++.+...+.
T Consensus        14 ~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~   64 (134)
T PRK04148         14 KGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFV   64 (134)
T ss_pred             cccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEE
Confidence            3456789999999 88766666668898 999999999999999888765544

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=96.90  E-value=0.0067  Score=50.88  Aligned_cols=78  Identities=23%  Similarity=0.287  Sum_probs=55.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC---ceEeCCCCCCchHHHH-HHHHhcC--Ccc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV---TEFLNPNDNNEPVQQV-IKRITDG--GAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~---~~~i~~~~~~~~~~~~-~~~~~~g--~~d  265 (291)
                      .|.||||.|+ +++|+..++-...+|= +||..++++++++.++..-.   ..+.|..+  .+.... +.++-..  ..+
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d--~~~~~~lvewLkk~~P~lN   80 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD--RDSRRELVEWLKKEYPNLN   80 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc--hhhHHHHHHHHHhhCCchh
Confidence            4679999965 8999999999999998 99999999999999887432   22455544  332222 2222222  578


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|-
T Consensus        81 vliNNAGI   88 (245)
T COG3967          81 VLINNAGI   88 (245)
T ss_pred             eeeecccc
Confidence            99988774

>PRK06182 short chain dehydrogenase; Validated

Probab=96.89  E-value=0.0081  Score=52.81  Aligned_cols=79  Identities=20%  Similarity=0.354  Sum_probs=55.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      ++++++|+|+ |.+|..+++.+...|. +|+++++++++++.+...+... ..|..+ .+++.+.+++..  .+++|+++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~~~id~li   79 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD-EASIKAAVDTIIAEEGRIDVLV   79 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEEE
Confidence            3578999987 9999999999988999 9999999888876665545433 234432 233334444332  24799999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        80 ~~ag~   84 (273)
T PRK06182         80 NNAGY   84 (273)
T ss_pred             ECCCc
Confidence            99884

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0095  Score=52.40  Aligned_cols=77  Identities=26%  Similarity=0.391  Sum_probs=54.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHh--cCCccEEEEc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRIT--DGGADYSFEC  270 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~--~g~~d~vld~  270 (291)
                      +++||+|+ |++|..+++.+...|+ +|+++++++++.+.+...+...+ .|..+ ...+.+.+.+..  .+++|+++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~vi~~   79 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND-GAALARLAEELEAEHGGLDVLINN   79 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEEEEC
Confidence            47899987 9999999999999999 99999998888777666554332 34432 233333333332  2479999999


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .|.
T Consensus        80 ag~   82 (274)
T PRK05693         80 AGY   82 (274)
T ss_pred             CCC
Confidence            884

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.79  E-value=0.014  Score=51.30  Aligned_cols=81  Identities=22%  Similarity=0.289  Sum_probs=57.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-----cCCce-EeCCCCCCchHHHHHHH-Hh-cC
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGVTE-FLNPNDNNEPVQQVIKR-IT-DG  262 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-----~g~~~-~i~~~~~~~~~~~~~~~-~~-~g  262 (291)
                      ..+.++||.|+ +++|...+..+...|. ++|.+.|+++|++.+.+     .|... ++..|-.+.+-...+.. +- .+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            46789999998 8999999999999999 99999999999886632     23322 33333222443444443 22 22


Q ss_pred             -CccEEEEccCC
Q 022819          263 -GADYSFECIGD  273 (291)
Q Consensus       263 -~~d~vld~~g~  273 (291)
                       .+|+.+++.|-
T Consensus        83 ~~IdvLVNNAG~   94 (265)
T COG0300          83 GPIDVLVNNAGF   94 (265)
T ss_pred             CcccEEEECCCc
Confidence             79999999885

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.76  E-value=0.0072  Score=51.21  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVI  256 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~----~g~~---~~i~~~~~~~~~~~~~  256 (291)
                      +.+..+++++++||-+|+| .|..+..+++..+ ..+|++++.+++-.+.+++    .+..   .++..+. ...    +
T Consensus        64 ~~~~l~~~~~~~VLDiG~G-sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~-~~~----~  137 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTG-SGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG-KRG----L  137 (205)
T ss_pred             HHHhcCCCCCCEEEEECcC-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc-ccC----C
Confidence            3456677899999999986 5777777787764 2389999999887776653    3432   1222221 111    1


Q ss_pred             HHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .  ..+.+|.|+-+.......+.+.+.|++||++
T Consensus       138 ~--~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~l  169 (205)
T PRK13944        138 E--KHAPFDAIIVTAAASTIPSALVRQLKDGGVL  169 (205)
T ss_pred             c--cCCCccEEEEccCcchhhHHHHHhcCcCcEE
Confidence            1  1247998887666556678888999999986

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.75  E-value=0.025  Score=48.34  Aligned_cols=79  Identities=25%  Similarity=0.371  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHc---CCceEe--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---GVTEFL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~---g~~~~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      ++++++|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ +++   +....+  |..+ .+...+.+++..  .++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   81 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS-TESARNVIEKAAKVLNA   81 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence            4679999987 8999999999999999 899999988876655 222   222233  2222 123333333322  136


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|.++.+.+.
T Consensus        82 id~ii~~ag~   91 (238)
T PRK05786         82 IDGLVVTVGG   91 (238)
T ss_pred             CCEEEEcCCC
Confidence            8999988874

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.75  E-value=0.002  Score=54.77  Aligned_cols=99  Identities=20%  Similarity=0.280  Sum_probs=65.8

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHH----cCCceE-eCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKA----FGVTEF-LNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~-~vi~~~~~~~~~~~a~~----~g~~~~-i~~~~~~~~~~~~~~~  258 (291)
                      +.+..+++++++||-+|+| .|+.++-+++..|.. +|+.++..++-.+.+++    ++...+ +...+....+      
T Consensus        64 ~l~~L~l~pg~~VLeIGtG-sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~------  136 (209)
T PF01135_consen   64 MLEALDLKPGDRVLEIGTG-SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW------  136 (209)
T ss_dssp             HHHHTTC-TT-EEEEES-T-TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT------
T ss_pred             HHHHHhcCCCCEEEEecCC-CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc------
Confidence            4677789999999999886 688888888887753 68999988876665543    455432 2222111111      


Q ss_pred             HhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ...+.||.|+-+.+.+......+++|++||++
T Consensus       137 ~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrL  168 (209)
T PF01135_consen  137 PEEAPFDRIIVTAAVPEIPEALLEQLKPGGRL  168 (209)
T ss_dssp             GGG-SEEEEEESSBBSS--HHHHHTEEEEEEE
T ss_pred             ccCCCcCEEEEeeccchHHHHHHHhcCCCcEE
Confidence            11238999999888877788999999999986

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.75  E-value=0.0058  Score=50.09  Aligned_cols=48  Identities=31%  Similarity=0.450  Sum_probs=40.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE  241 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~  241 (291)
                      ++.+|+|+|+|.+|..++.+++.+|+ +++..+...++.+..+..+...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~   66 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYF   66 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEE
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCce
Confidence            44789999999999999999999999 9999999999988888877654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.013  Score=49.87  Aligned_cols=77  Identities=22%  Similarity=0.331  Sum_probs=52.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE--eCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF--LNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~--i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++++|.|+ |++|...+..+...|+ +|+++++++++.+.+++++...+  .|..+ .++..+.++++..+++|+++.+.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~id~vi~~a   79 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND-PASLDQLLQRLQGQRFDLLFVNA   79 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC-HHHHHHHHHHhhcCCCCEEEEcC
Confidence            57889987 9999999988888999 99999988877666655532222  23322 23333444444334799999987


Q ss_pred             CC
Q 022819          272 GD  273 (291)
Q Consensus       272 g~  273 (291)
                      |.
T Consensus        80 g~   81 (225)
T PRK08177         80 GI   81 (225)
T ss_pred             cc
Confidence            64

>PRK08017 oxidoreductase; Provisional

Probab=96.70  E-value=0.014  Score=50.56  Aligned_cols=77  Identities=27%  Similarity=0.422  Sum_probs=54.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHH---HHHHHHhcCCccEEEE
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQ---QVIKRITDGGADYSFE  269 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~---~~~~~~~~g~~d~vld  269 (291)
                      ++++|+|+ |++|..+++.+...|. +|++++++.++.+.+++.++..+ .|..+ .....   +.+.+...+.+|.++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~~~~~ii~   80 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD-PESVERAADEVIALTDNRLYGLFN   80 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC-HHHHHHHHHHHHHhcCCCCeEEEE
Confidence            57999988 9999999999999998 89999999988888777775443 34332 12222   2333323347888888


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        81 ~ag~   84 (256)
T PRK08017         81 NAGF   84 (256)
T ss_pred             CCCC
Confidence            8763

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.68  E-value=0.016  Score=53.69  Aligned_cols=84  Identities=23%  Similarity=0.350  Sum_probs=59.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC---C-ceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG---V-TEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g---~-~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      .+|||+|+|.+|..+++.+...+-.+|+..+++.++++.+....   . ...+|..+ .+...+.|++     +|+||++
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d-~~al~~li~~-----~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD-VDALVALIKD-----FDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC-hHHHHHHHhc-----CCEEEEe
Confidence            47899999999999999988888559999999999998887653   2 22455443 1233333333     5999999


Q ss_pred             cCChHHHHHHHHhhc
Q 022819          271 IGDTGMITTALQSCC  285 (291)
Q Consensus       271 ~g~~~~~~~~~~~l~  285 (291)
                      .+..... .+++.+.
T Consensus        76 ~p~~~~~-~i~ka~i   89 (389)
T COG1748          76 APPFVDL-TILKACI   89 (389)
T ss_pred             CCchhhH-HHHHHHH
Confidence            9985554 4444433

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.66  E-value=0.018  Score=49.00  Aligned_cols=98  Identities=18%  Similarity=0.264  Sum_probs=67.4

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~  257 (291)
                      +.+..+++++++||-+|+| .|..+..+++..+. .+|++++.+++-.+.+++    .|...  ++.-+. ...+     
T Consensus        68 ~~~~l~~~~g~~VLdIG~G-sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~-~~~~-----  140 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTG-SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG-TLGY-----  140 (212)
T ss_pred             HHHHcCCCCcCEEEEECCc-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc-ccCC-----
Confidence            4566778999999999886 57777788887653 389999999988777654    34332  222211 1111     


Q ss_pred             HHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       ...+.||.|+-....+.......+.|++||++
T Consensus       141 -~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~l  172 (212)
T PRK13942        141 -EENAPYDRIYVTAAGPDIPKPLIEQLKDGGIM  172 (212)
T ss_pred             -CcCCCcCEEEECCCcccchHHHHHhhCCCcEE
Confidence             11237999887655566778889999999986

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.011  Score=53.92  Aligned_cols=79  Identities=24%  Similarity=0.382  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHH--hcC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRI--TDG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~--~~g  262 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++++.+    ++.|... +  .|..+ .++..+.+.+.  ..+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD-ADQVKALATQAASFGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHhcC
Confidence            5688999987 8999999999999999 899999988876543    3345443 2  23332 12222222222  125


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++++.|.
T Consensus        84 ~iD~lVnnAG~   94 (330)
T PRK06139         84 RIDVWVNNVGV   94 (330)
T ss_pred             CCCEEEECCCc
Confidence            79999999884

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.64  E-value=0.016  Score=54.45  Aligned_cols=76  Identities=18%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~-a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      -++.+++|+|+|.+|.+++..+...|+..++.+.++.++.+. +.+++...++.+    .+    +.+.. ..+|+||.|
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~----~~----l~~~l-~~aDiVI~a  249 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL----SE----LPQLI-KKADIIIAA  249 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH----HH----HHHHh-ccCCEEEEC
Confidence            467899999999999999999999998789999888777544 445542223222    11    22211 258999999


Q ss_pred             cCChHH
Q 022819          271 IGDTGM  276 (291)
Q Consensus       271 ~g~~~~  276 (291)
                      ++.+..
T Consensus       250 T~a~~~  255 (414)
T PRK13940        250 VNVLEY  255 (414)
T ss_pred             cCCCCe
Confidence            998644

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.63  E-value=0.0042  Score=46.71  Aligned_cols=90  Identities=20%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHH-HcCCCeEEEEcCChhhHHHHHHc----CC-ce-EeCCCCCCchHHHHHHHHhcCCcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAK-ARGASRIIGVDTNPEKCEKAKAF----GV-TE-FLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~-~~g~~~vi~~~~~~~~~~~a~~~----g~-~~-~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      |+++||-+|+| .|..++.+++ ..++ ++++++.+++.++.+++.    +. +. .+...    ++ .. .......+|
T Consensus         1 p~~~vLDlGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~----d~-~~-~~~~~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGCG-TGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQG----DA-EF-DPDFLEPFD   72 (112)
T ss_dssp             TTCEEEEETTT-TSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES----CC-HG-GTTTSSCEE
T ss_pred             CCCEEEEEcCc-CCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC----cc-cc-CcccCCCCC
Confidence            57899999987 4777888888 4677 999999999998888653    21 11 11111    11 01 111122799


Q ss_pred             EEEEcc-CC---h------HHHHHHHHhhccCccc
Q 022819          266 YSFECI-GD---T------GMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~-g~---~------~~~~~~~~~l~~~G~i  290 (291)
                      +|+... ..   .      ..++.+.+.|++||++
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l  107 (112)
T PF12847_consen   73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRL  107 (112)
T ss_dssp             EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEECCCccccccchhHHHHHHHHHHHhcCCCcEE
Confidence            999876 21   1      2378899999999986

...

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.021  Score=49.01  Aligned_cols=77  Identities=22%  Similarity=0.410  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-EeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      ++++++|+|+ |.+|..+++.+...|. +|+.++++.++.+.+. +.+... ..|..+ .......+..  .+++|++|.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~--~~~~d~vi~   83 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD-DAAIRAALAA--AGAFDGLVN   83 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC-HHHHHHHHHH--hCCCCEEEE
Confidence            4678999987 8999999999999999 8999988887765543 344332 234332 1122222222  237899999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        84 ~ag~   87 (245)
T PRK07060         84 CAGI   87 (245)
T ss_pred             CCCC
Confidence            9875

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.62  E-value=0.014  Score=56.07  Aligned_cols=74  Identities=23%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      +.++++|+|+|.|..|++++++++..|+ .|++.|.++++.+.++++|+..+ ....    ..+.+     ..+|+|+.+
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~~-~~~~----~~~~l-----~~~D~VV~S   77 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVATV-STSD----AVQQI-----ADYALVVTS   77 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEEE-cCcc----hHhHh-----hcCCEEEEC
Confidence            5578999999999999999999999999 89999987777777777777433 2211    11122     147999999


Q ss_pred             cCChH
Q 022819          271 IGDTG  275 (291)
Q Consensus       271 ~g~~~  275 (291)
                      .|.+.
T Consensus        78 pGi~~   82 (488)
T PRK03369         78 PGFRP   82 (488)
T ss_pred             CCCCC
Confidence            88753

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.48  E-value=0.041  Score=45.13  Aligned_cols=84  Identities=21%  Similarity=0.337  Sum_probs=56.6

Q ss_pred             EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC--
Q 022819          197 VVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD--  273 (291)
Q Consensus       197 vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~--  273 (291)
                      |+|+|+ |.+|..+++.+...|. +|+++.+++++.+.  ..++.. +..+.  .+. +.+.+... ++|+||.++|.  
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~-~~~d~--~d~-~~~~~al~-~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEI-IQGDL--FDP-DSVKAALK-GADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEE-EESCT--TCH-HHHHHHHT-TSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--cccccc-ceeee--hhh-hhhhhhhh-hcchhhhhhhhhc
Confidence            688997 9999999999999998 99999999998776  333333 22221  122 23333322 79999999984  


Q ss_pred             --hHHHHHHHHhhccCc
Q 022819          274 --TGMITTALQSCCDVR  288 (291)
Q Consensus       274 --~~~~~~~~~~l~~~G  288 (291)
                        .......++.++..|
T Consensus        73 ~~~~~~~~~~~a~~~~~   89 (183)
T PF13460_consen   73 KDVDAAKNIIEAAKKAG   89 (183)
T ss_dssp             THHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccc
Confidence              233555555555443

...

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.026  Score=48.98  Aligned_cols=79  Identities=27%  Similarity=0.403  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceE-eCCCCCCchHHHHHHHHhc--CCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF-LNPNDNNEPVQQVIKRITD--GGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~-i~~~~~~~~~~~~~~~~~~--g~~d~v  267 (291)
                      ++++++|+|+ |++|..+++.+...|+ +|+.+++++++.+.. ++++...+ .|..+ .......+.+...  +.+|++
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v   83 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD-EDAVNALFDTAAETYGSVDIA   83 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            5789999987 9999999999999999 899998887766544 34443222 23332 1233333333221  378999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +.+.|.
T Consensus        84 i~~ag~   89 (255)
T PRK06057         84 FNNAGI   89 (255)
T ss_pred             EECCCc
Confidence            998874

>PRK12742 oxidoreductase; Provisional

Probab=96.45  E-value=0.032  Score=47.62  Aligned_cols=77  Identities=19%  Similarity=0.322  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH-HHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA-KAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a-~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+.+.+ ++++.+.+ ++++...+ .|..+ ...+.+.+.+.  +.+|+++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~id~li   80 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD-RDAVIDVVRKS--GALDILV   80 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC-HHHHHHHHHHh--CCCcEEE
Confidence            4689999987 9999999999999999 7776644 44444433 44554332 23322 12333333332  4689999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      ++.|.
T Consensus        81 ~~ag~   85 (237)
T PRK12742         81 VNAGI   85 (237)
T ss_pred             ECCCC
Confidence            99875

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.44  E-value=0.033  Score=47.59  Aligned_cols=102  Identities=22%  Similarity=0.228  Sum_probs=71.1

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ...+.+..+++|=+|.+ +|+.++.+|..+. -.+++.++.++++.+.|++    .|....+..-.. -+..+.+.+...
T Consensus        53 ~L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~  130 (219)
T COG4122          53 LLARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLD  130 (219)
T ss_pred             HHHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccC
Confidence            34455678889888864 6888999999886 3389999999999888865    466552211110 245555555444


Q ss_pred             CCccEEE-EccC--ChHHHHHHHHhhccCccc
Q 022819          262 GGADYSF-ECIG--DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vl-d~~g--~~~~~~~~~~~l~~~G~i  290 (291)
                      +.||.|| |+--  -+..++.++++|++||-|
T Consensus       131 ~~fDliFIDadK~~yp~~le~~~~lLr~GGli  162 (219)
T COG4122         131 GSFDLVFIDADKADYPEYLERALPLLRPGGLI  162 (219)
T ss_pred             CCccEEEEeCChhhCHHHHHHHHHHhCCCcEE
Confidence            6899766 4332  267899999999999965

>PRK14967 putative methyltransferase; Provisional

Probab=96.43  E-value=0.039  Score=47.28  Aligned_cols=94  Identities=17%  Similarity=0.127  Sum_probs=61.5

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhcCC
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      ...++++++||-.|+|. |..++.+++. +..++++++.+++.++.+++    .+....+..    .++.+.   +..+.
T Consensus        31 ~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~----~d~~~~---~~~~~  101 (223)
T PRK14967         31 AEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR----GDWARA---VEFRP  101 (223)
T ss_pred             hcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE----Cchhhh---ccCCC
Confidence            34567889999999986 8888888875 55589999999988876654    343322211    122221   12247


Q ss_pred             ccEEEEccCC---------------------------hHHHHHHHHhhccCccc
Q 022819          264 ADYSFECIGD---------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g~---------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      ||+|+...+-                           ...+..+.+.|+++|++
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l  155 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSL  155 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEE
Confidence            9988865210                           12456788899999986

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.38  E-value=0.0058  Score=54.18  Aligned_cols=95  Identities=16%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~  258 (291)
                      +.+.+++++|++||-+|+| -|..++.+|+..|+ +|+++..+++..+++++    .|...  .+..    .++    ++
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~----~D~----~~  123 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRL----QDY----RD  123 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE----S-G----GG
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE----eec----cc
Confidence            5688899999999999987 56677788888899 99999999999888754    45321  1111    111    11


Q ss_pred             HhcCCccEEEE-----ccCC---hHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFE-----CIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld-----~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      +. +.+|.|+.     .+|.   +..++.+.+.|+|||++
T Consensus       124 ~~-~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~  162 (273)
T PF02353_consen  124 LP-GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRL  162 (273)
T ss_dssp             ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred             cC-CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence            11 16887553     4543   45689999999999985

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.31  E-value=0.035  Score=50.36  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H----cCCce----EeCCCCCCchHHHHHHHHhcC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A----FGVTE----FLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~----~g~~~----~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      .+++++|+|+ +++|.+.+..+...|+ +|+.+++++++++.+. +    .+...    ..|..++..+..+.+.+...+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            5789999987 8999999988888899 8999999998876542 2    12111    234432113334445544444


Q ss_pred             -CccEEEEccCC
Q 022819          263 -GADYSFECIGD  273 (291)
Q Consensus       263 -~~d~vld~~g~  273 (291)
                       .+|+++++.|.
T Consensus       131 ~didilVnnAG~  142 (320)
T PLN02780        131 LDVGVLINNVGV  142 (320)
T ss_pred             CCccEEEEecCc
Confidence             57799998874

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.032  Score=48.30  Aligned_cols=79  Identities=18%  Similarity=0.290  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc-eEe--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~-~~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|+|+ |.+|..++..+...|+ +|+++.+++++++.+..    .+.. .++  |..+ ..++.+.+.+..  .+
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   85 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD-YQSIKAAVAHAETEAG   85 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHhcC
Confidence            5789999987 9999999999999999 89999998887654432    1221 222  3322 233434333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        86 ~~d~li~~ag~   96 (258)
T PRK06949         86 TIDILVNNSGV   96 (258)
T ss_pred             CCCEEEECCCC
Confidence            78999999884

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.038  Score=46.89  Aligned_cols=77  Identities=21%  Similarity=0.288  Sum_probs=52.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      ++++|+|+ |.+|..+++.+...|+ +|+.++++.++.+.++..+... ..|..+ ..++...+.+...+.+|+++.+.|
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~d~vi~~ag   79 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD-PASVAGLAWKLDGEALDAAVYVAG   79 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC-HHHHHHHHHHhcCCCCCEEEECCC
Confidence            46888886 9999999988888898 8999998888777666665432 233332 123333333332237999999877


Q ss_pred             C
Q 022819          273 D  273 (291)
Q Consensus       273 ~  273 (291)
                      .
T Consensus        80 ~   80 (222)
T PRK06953         80 V   80 (222)
T ss_pred             c
Confidence            5

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.28  E-value=0.026  Score=45.76  Aligned_cols=89  Identities=20%  Similarity=0.336  Sum_probs=55.9

Q ss_pred             HhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCc
Q 022819          186 WNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       186 ~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      .+..+ .-.+++++|.|-|-+|...++.++.+|+ +|++++.++-+.-.|..-|....        .    +.+.. ...
T Consensus        14 ~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~v~--------~----~~~a~-~~a   79 (162)
T PF00670_consen   14 MRATNLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFEVM--------T----LEEAL-RDA   79 (162)
T ss_dssp             HHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-EEE-------------HHHHT-TT-
T ss_pred             HhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcEec--------C----HHHHH-hhC
Confidence            33334 3578999999999999999999999999 99999999877766666565321        1    11211 257


Q ss_pred             cEEEEccCChHH-HHHHHHhhccCc
Q 022819          265 DYSFECIGDTGM-ITTALQSCCDVR  288 (291)
Q Consensus       265 d~vld~~g~~~~-~~~~~~~l~~~G  288 (291)
                      |+++.++|..+. -.+-++.|+++.
T Consensus        80 di~vtaTG~~~vi~~e~~~~mkdga  104 (162)
T PF00670_consen   80 DIFVTATGNKDVITGEHFRQMKDGA  104 (162)
T ss_dssp             SEEEE-SSSSSSB-HHHHHHS-TTE
T ss_pred             CEEEECCCCccccCHHHHHHhcCCe
Confidence            999999998554 345566777663

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.035  Score=47.29  Aligned_cols=79  Identities=22%  Similarity=0.261  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHH----HHHcCCceE-eCCCCCCchHHHHHHHHh--cCCc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEK----AKAFGVTEF-LNPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~----a~~~g~~~~-i~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      +++++||+|+ |.+|..+++.+...|+ +|+.++++.++...    ++..+...+ .|..+ ..++.+.+.+..  .+++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~   83 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD-PQAARRAVDEVNRQFGRL   83 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC-HHHHHHHHHHHHHHhCCc
Confidence            4789999987 9999999999988899 89999887655322    222333221 23322 133333333322  1378


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus        84 d~vi~~ag~   92 (239)
T PRK12828         84 DALVNIAGA   92 (239)
T ss_pred             CEEEECCcc
Confidence            999998774

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.26  E-value=0.029  Score=46.38  Aligned_cols=46  Identities=46%  Similarity=0.702  Sum_probs=37.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      -.+++|.|+|.|.+|..+++.++.+|+ +|++.+++..........+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTT
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccc
Confidence            368999999999999999999999999 9999998887665344433

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.038  Score=49.36  Aligned_cols=79  Identities=24%  Similarity=0.293  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC--ce-E--eCCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV--TE-F--LNPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~--~~-~--i~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+.+++++++++.+ ++++.  .. .  .|..+ .++....+.+..  .+.
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~   85 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD-LAAMQAAAEEAVERFGG   85 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence            5789999987 8999999999999999 899999988876654 44542  11 1  34332 123333333322  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++++.|.
T Consensus        86 id~vI~nAG~   95 (296)
T PRK05872         86 IDVVVANAGI   95 (296)
T ss_pred             CCEEEECCCc
Confidence            9999999885

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.22  E-value=0.01  Score=50.61  Aligned_cols=98  Identities=16%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~  257 (291)
                      +.+...++++++||-+|+| .|..++.+++..+. .+|++++.+++..+.+++    .|.+.  ++..+     ..+...
T Consensus        69 ~~~~l~~~~~~~VLDiG~G-sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d-----~~~~~~  142 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTG-SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD-----GTQGWE  142 (215)
T ss_pred             HHHHhCCCCcCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC-----cccCCc
Confidence            4456678899999999886 56667777776553 269999999988777653    44432  22211     100000


Q ss_pred             HHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        ....||.|+-....+.......+.|++||++
T Consensus       143 --~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~l  173 (215)
T TIGR00080       143 --PLAPYDRIYVTAAGPKIPEALIDQLKEGGIL  173 (215)
T ss_pred             --ccCCCCEEEEcCCcccccHHHHHhcCcCcEE
Confidence              1137998876555556677888999999986

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.06  Score=46.89  Aligned_cols=81  Identities=20%  Similarity=0.308  Sum_probs=52.9

Q ss_pred             CCCCCEEEEEcC-C-hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-----cCCce--Ee--CCCCCCchHHHHHHHH
Q 022819          191 ISKGSTVVIFGL-G-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGVTE--FL--NPNDNNEPVQQVIKRI  259 (291)
Q Consensus       191 ~~~~~~vlV~G~-g-~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-----~g~~~--~i--~~~~~~~~~~~~~~~~  259 (291)
                      +.+++++||+|+ | ++|.++++.+...|+ +|+.+++++++++...+     ++...  .+  |..+ .++....+.+.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~   91 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS-EAQVDALIDAA   91 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC-HHHHHHHHHHH
Confidence            345789999986 6 799999999999999 89988888776654422     34322  22  3322 12233333322


Q ss_pred             h--cCCccEEEEccCC
Q 022819          260 T--DGGADYSFECIGD  273 (291)
Q Consensus       260 ~--~g~~d~vld~~g~  273 (291)
                      .  .+.+|+++.+.|.
T Consensus        92 ~~~~g~id~li~~ag~  107 (262)
T PRK07831         92 VERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1  2478999999984

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.19  E-value=0.054  Score=45.77  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      .+.+|+|+|+|++|..+++.+..+|..++..+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45679999999999999999999999889999876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.17  E-value=0.038  Score=48.26  Aligned_cols=79  Identities=14%  Similarity=0.199  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|..+++.+...|+ +|+.+++++++.+.+.+    .+... +  .|..+ .....+.+.+..  .+
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   86 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH-PEATAGLAGQAVEAFG   86 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            5788999987 8999999999999999 99999998876554322    23222 2  23332 122323333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        87 ~id~vi~~Ag~   97 (263)
T PRK07814         87 RLDIVVNNVGG   97 (263)
T ss_pred             CCCEEEECCCC
Confidence            78999998874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.17  E-value=0.042  Score=47.92  Aligned_cols=79  Identities=20%  Similarity=0.268  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCc-eEe--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVT-EFL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~-~~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ +++|..+++.+...|+ +|+.+++++++.+.+.+ ++.. ..+  |..+ ..+....+.+..  .+.+|
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id   82 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS-YADNQRAVDQTVDAFGKLD   82 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHhcCCCC
Confidence            4678999987 8999999999999999 89999998887766543 3321 122  3222 123333333332  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        83 ~li~~ag~   90 (263)
T PRK06200         83 CFVGNAGI   90 (263)
T ss_pred             EEEECCCC
Confidence            99999884

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.16  E-value=0.031  Score=53.49  Aligned_cols=78  Identities=23%  Similarity=0.366  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh---------------------hhHHHHHHcCCceEeCCCCCCch
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP---------------------EKCEKAKAFGVTEFLNPNDNNEP  251 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~---------------------~~~~~a~~~g~~~~i~~~~~~~~  251 (291)
                      .+++|+|+|+|+.|+.++..++.+|. .|+.++..+                     ...++++++|++..++.... .+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~-~~  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG-RD  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC-Cc
Confidence            57899999999999999999999999 788887653                     24567788898766554321 11


Q ss_pred             HHHHHHHHhcCCccEEEEccCChH
Q 022819          252 VQQVIKRITDGGADYSFECIGDTG  275 (291)
Q Consensus       252 ~~~~~~~~~~g~~d~vld~~g~~~  275 (291)
                      +  .+.++. ..+|.||.++|...
T Consensus       218 ~--~~~~~~-~~~D~vilAtGa~~  238 (467)
T TIGR01318       218 I--SLDDLL-EDYDAVFLGVGTYR  238 (467)
T ss_pred             c--CHHHHH-hcCCEEEEEeCCCC
Confidence            1  112221 26999999999743

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.047  Score=46.63  Aligned_cols=79  Identities=24%  Similarity=0.337  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC---CceEe--CCCCCCchHHHHHHHHhc--CC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG---VTEFL--NPNDNNEPVQQVIKRITD--GG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g---~~~~i--~~~~~~~~~~~~~~~~~~--g~  263 (291)
                      .+.+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +++.   ....+  |..+ ..++.+.+++...  ++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   82 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRD-EADVQRAVDAIVAAFGG   82 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            4688999987 9999999998888899 899999888766544 3332   11222  3322 2334444443322  37


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|++|.+.|.
T Consensus        83 ~d~vi~~ag~   92 (237)
T PRK07326         83 LDVLIANAGV   92 (237)
T ss_pred             CCEEEECCCC
Confidence            8999998764

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.039  Score=47.87  Aligned_cols=83  Identities=20%  Similarity=0.223  Sum_probs=54.1

Q ss_pred             cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCc--eEe--CCCCCCchHHHHHHHHh--
Q 022819          189 ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVT--EFL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       189 ~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~--~~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      ...-++.++||+|+ |.+|..++..+...|. +|+.+++++++.+.+.+ ..-.  ..+  |..+ +......+.+..  
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   83 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD-PAQVERVFDTAVER   83 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC-HHHHHHHHHHHHHH
Confidence            34457789999987 9999999999999999 89999988776655433 2211  222  3322 122322233221  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+|+.+.|.
T Consensus        84 ~~~~d~vi~~ag~   96 (264)
T PRK12829         84 FGGLDVLVNNAGI   96 (264)
T ss_pred             hCCCCEEEECCCC
Confidence            1479999998875

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.14  E-value=0.041  Score=47.98  Aligned_cols=79  Identities=20%  Similarity=0.236  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-CCce-E--eCCCCCCchHHHHHHHHhc--CCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVTE-F--LNPNDNNEPVQQVIKRITD--GGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-g~~~-~--i~~~~~~~~~~~~~~~~~~--g~~d  265 (291)
                      ++++++|.|+ |++|..+++.+...|+ +|+.+++++++.+.+++. +... .  .|..+ ..+..+.+.+...  +.+|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id   81 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS-LDDHKEAVARCVAAFGKID   81 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence            4688999987 8999999999999999 899999888776665543 3211 2  23322 1223333333322  4789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        82 ~li~~Ag~   89 (262)
T TIGR03325        82 CLIPNAGI   89 (262)
T ss_pred             EEEECCCC
Confidence            99999873

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PLN02476 O-methyltransferase

Probab=96.11  E-value=0.049  Score=48.35  Aligned_cols=102  Identities=17%  Similarity=0.144  Sum_probs=67.8

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~  260 (291)
                      ....+..+.++||=+|.+ +|..++.+|+.++. .+++.++.+++..+.+++    .|...-+....  .+..+.+.++.
T Consensus       111 ~~L~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~--GdA~e~L~~l~  187 (278)
T PLN02476        111 AMLVQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH--GLAAESLKSMI  187 (278)
T ss_pred             HHHHHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHHH
Confidence            444566778999999874 67788888887742 279999999998887754    46543222211  33444454432


Q ss_pred             ----cCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 ----DGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ----~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                          .+.||.||--...   ...++.++++|++||.|
T Consensus       188 ~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvI  224 (278)
T PLN02476        188 QNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVI  224 (278)
T ss_pred             hcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEE
Confidence                2379976643332   46688999999999975

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.046  Score=47.28  Aligned_cols=79  Identities=22%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce--E--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--F--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~--~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||+|+ |.+|..+++.+...|+ +|+.+.++++..+.+.++....  .  .|..+ ..++...+.+..  .+++|
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~~d   91 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD-SQSVEAAVAAVISAFGRID   91 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence            4679999987 9999999999988999 8999988877655554442211  2  23322 123333333321  13789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        92 ~vi~~ag~   99 (255)
T PRK06841         92 ILVNSAGV   99 (255)
T ss_pred             EEEECCCC
Confidence            99999885

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.04  E-value=0.081  Score=45.47  Aligned_cols=79  Identities=29%  Similarity=0.352  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhc--C
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~~--g  262 (291)
                      +++++||.|+ |++|..+++.+...|+ +|+.+++++++.+.+    ++.+... .  .|..+ .....+.+.....  +
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD-EEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            4788999987 9999999999999998 899998887765443    2234332 2  23222 1233333333322  4


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|.+|.+.|.
T Consensus        82 ~id~vi~~ag~   92 (253)
T PRK08217         82 QLNGLINNAGI   92 (253)
T ss_pred             CCCEEEECCCc
Confidence            78999998873

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=96.04  E-value=0.0011  Score=51.35  Aligned_cols=45  Identities=16%  Similarity=0.343  Sum_probs=31.6

Q ss_pred             cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC--ChHHHHHHHHhhccCccc
Q 022819          237 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG--DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       237 ~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g--~~~~~~~~~~~l~~~G~i  290 (291)
                      ||+++++|++.  .++      ...+++|+|||++|  ++..+..++++| ++|++
T Consensus         1 LGAd~vidy~~--~~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~   47 (127)
T PF13602_consen    1 LGADEVIDYRD--TDF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRV   47 (127)
T ss_dssp             CT-SEEEETTC--SHH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEE
T ss_pred             CCcCEEecCCC--ccc------cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEE
Confidence            68999999975  655      22349999999999  655557777788 88875

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.052  Score=47.86  Aligned_cols=79  Identities=23%  Similarity=0.276  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-e-E--eCCCCCCchHHHHHHHHhc--CCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-E-F--LNPNDNNEPVQQVIKRITD--GGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~-~--i~~~~~~~~~~~~~~~~~~--g~~d  265 (291)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.+.... . .  .|..+ .......+++...  +++|
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~~~d   80 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD-FDAIDAVVADAEATFGPID   80 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence            3578999987 9999999999988999 899999988877665543221 1 2  23332 1233333333221  3689


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        81 ~vv~~ag~   88 (277)
T PRK06180         81 VLVNNAGY   88 (277)
T ss_pred             EEEECCCc
Confidence            99999885

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.03  E-value=0.065  Score=47.84  Aligned_cols=42  Identities=26%  Similarity=0.384  Sum_probs=37.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      .+++++|+|+|+.|.+++..+..+|+.+|+.++++.+|.+.+
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l  167 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAAL  167 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            467899999999999999999999998899999998876654

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.03  E-value=0.085  Score=44.15  Aligned_cols=100  Identities=13%  Similarity=0.156  Sum_probs=58.7

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhc
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ....++.++++||-+|+| .|..++.+++.....+|++++.+++..+.+++    ++...+....   .+..+.+..+. 
T Consensus        33 ~~~l~~~~~~~VLDiG~G-~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~---~d~~~~~~~~~-  107 (196)
T PRK07402         33 ISQLRLEPDSVLWDIGAG-TGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE---GSAPECLAQLA-  107 (196)
T ss_pred             HHhcCCCCCCEEEEeCCC-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE---CchHHHHhhCC-
Confidence            344567788999888775 34455556655432399999999988877754    4543221111   11111222221 


Q ss_pred             CCcc-EEEEccCC-hHHHHHHHHhhccCccc
Q 022819          262 GGAD-YSFECIGD-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d-~vld~~g~-~~~~~~~~~~l~~~G~i  290 (291)
                      ..+| ++++.... ...++.+.+.|++||++
T Consensus       108 ~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~l  138 (196)
T PRK07402        108 PAPDRVCIEGGRPIKEILQAVWQYLKPGGRL  138 (196)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHhcCCCeEE
Confidence            2234 44543222 46788899999999986

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.00  E-value=0.053  Score=46.93  Aligned_cols=102  Identities=18%  Similarity=0.133  Sum_probs=66.3

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~  260 (291)
                      ....+..+.++||-+|.| .|..++.+++.++ ..++++++.+++..+.+++    .|...-+....  .+..+.+.++.
T Consensus        61 ~~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~--gda~~~L~~l~  137 (234)
T PLN02781         61 SMLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ--SDALSALDQLL  137 (234)
T ss_pred             HHHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHH
Confidence            344556678899999875 5777777777663 3499999999998887765    35432121111  23344444442


Q ss_pred             ----cCCccEEEEccC---ChHHHHHHHHhhccCccc
Q 022819          261 ----DGGADYSFECIG---DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ----~g~~d~vld~~g---~~~~~~~~~~~l~~~G~i  290 (291)
                          .+.||+||--..   -...++.+++.+++||.|
T Consensus       138 ~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~i  174 (234)
T PLN02781        138 NNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGII  174 (234)
T ss_pred             hCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEE
Confidence                237998875432   246788899999999975

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.05  Score=47.07  Aligned_cols=74  Identities=19%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-E--eCCCCCCchHHHHHHHHhcCCcc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-F--LNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~--i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      ++++||.|+ |.+|..+++.+...|+ +|+++.+++++.+.+++    .+... +  .|..+  .   +.+.....+++|
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~---~~~~~~~~~~id   75 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD--A---IDRAQAAEWDVD   75 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC--H---HHHHHHhcCCCC
Confidence            457999987 9999999999999999 89999887766554432    23222 2  23322  2   223333334899


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      ++|.+.|.
T Consensus        76 ~vi~~ag~   83 (257)
T PRK09291         76 VLLNNAGI   83 (257)
T ss_pred             EEEECCCc
Confidence            99998873

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.97  E-value=0.06  Score=52.40  Aligned_cols=48  Identities=17%  Similarity=0.168  Sum_probs=39.9

Q ss_pred             HhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          186 WNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      -...+.+.++++||+|+ |.+|..+++.+...|. +|++++++.++.+.+
T Consensus        72 ~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l  120 (576)
T PLN03209         72 PKELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL  120 (576)
T ss_pred             ccccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            34456678999999987 9999999999988998 899998988876543

>PLN02366 spermidine synthase

Probab=95.96  E-value=0.074  Score=48.01  Aligned_cols=99  Identities=14%  Similarity=0.094  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC-----CchHHHHHHHHhcCCcc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN-----NEPVQQVIKRITDGGAD  265 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~-----~~~~~~~~~~~~~g~~d  265 (291)
                      ..+.++||++|+|. |..+..+++.-+..+|.+++.+++-.+.++++-...-...++.     ..+..+.+++...+.+|
T Consensus        89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            35678999998764 5556677777666689999999888888877411100000000     03344455543344799


Q ss_pred             EEEEccCC----------hHHHHHHHHhhccCccc
Q 022819          266 YSFECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      +||--...          .+.++.+.+.|+++|.+
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvl  202 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVV  202 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEE
Confidence            77653222          34688899999999976

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.96  E-value=0.041  Score=54.80  Aligned_cols=76  Identities=25%  Similarity=0.330  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh---------------------hHHHHHHcCCceEeCCCCCC-c
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE---------------------KCEKAKAFGVTEFLNPNDNN-E  250 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~---------------------~~~~a~~~g~~~~i~~~~~~-~  250 (291)
                      .+++|+|+|+|+.|+.++..++.+|. .|++++..+.                     +.++++++|++..++..-.. .
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            47999999999999999999999999 7888876652                     45677888887666553211 1


Q ss_pred             hHHHHHHHHhcCCccEEEEccCCh
Q 022819          251 PVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       251 ~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      .+    .++. ..+|.||.++|..
T Consensus       388 ~~----~~l~-~~~DaV~latGa~  406 (639)
T PRK12809        388 TF----SDLT-SEYDAVFIGVGTY  406 (639)
T ss_pred             CH----HHHH-hcCCEEEEeCCCC
Confidence            22    2221 2689999999973

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.95  E-value=0.045  Score=47.06  Aligned_cols=79  Identities=22%  Similarity=0.328  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC--Cce-Ee--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFG--VTE-FL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g--~~~-~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||+|+ |.+|..+++.+...|. +|+.+++++++.+.+. .+.  ... .+  |..+ ..++...+.+..  .+.
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   81 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD-EADVEAAVAAALERFGS   81 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence            4578999987 9999999999989999 7999999887765442 222  111 22  3222 233333333321  237


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        82 ~d~vi~~ag~   91 (251)
T PRK07231         82 VDILVNNAGT   91 (251)
T ss_pred             CCEEEECCCC
Confidence            8999998875

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.94  E-value=0.071  Score=47.62  Aligned_cols=79  Identities=19%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      .+++++|+|+ |++|...++.+...|+ +|++++++.++.+.+.    +.+... ++  |..+ .++..+.+.+..  .+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g  116 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD-LDAVDALVADVEKRIG  116 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            3578999987 9999999999988999 9999999887765442    223322 22  3322 123333333221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus       117 ~id~li~~AG~  127 (293)
T PRK05866        117 GVDILINNAGR  127 (293)
T ss_pred             CCCEEEECCCC
Confidence            78999999875

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.92  E-value=0.071  Score=46.70  Aligned_cols=79  Identities=23%  Similarity=0.337  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc----CCce-E--eCCCCCCchHHHHHHHHh-cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF----GVTE-F--LNPNDNNEPVQQVIKRIT-DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~----g~~~-~--i~~~~~~~~~~~~~~~~~-~g  262 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++++.+. ++    +... .  .|..+ ..+..+.+.+.. .+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~g   84 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK-REDLERTVKELKNIG   84 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHHHhhC
Confidence            4788999987 8999999999999999 8999998887765443 22    3221 2  23332 233333333322 24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        85 ~iD~lv~nag~   95 (263)
T PRK08339         85 EPDIFFFSTGG   95 (263)
T ss_pred             CCcEEEECCCC
Confidence            79999998875

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.91  E-value=0.056  Score=46.53  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~--~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      -++.+||-+|+| .|++..-+|+ +|+ .|.++|-+++..+.++......  -++|.   ....+.+.+. ++.||+|+.
T Consensus        58 l~g~~vLDvGCG-gG~Lse~mAr-~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~---~~~~edl~~~-~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCG-GGILSEPLAR-LGA-SVTGIDASEKPIEVAKLHALESGVNIDYR---QATVEDLASA-GGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCC-ccHhhHHHHH-CCC-eeEEecCChHHHHHHHHhhhhccccccch---hhhHHHHHhc-CCCccEEEE
Confidence            478899999985 2555555555 477 9999999999999998643222  24453   2222232221 148999875


Q ss_pred             -----ccCCh-HHHHHHHHhhccCccc
Q 022819          270 -----CIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       270 -----~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                           -+..+ ..+..+.++++|+|.+
T Consensus       131 mEVlEHv~dp~~~~~~c~~lvkP~G~l  157 (243)
T COG2227         131 MEVLEHVPDPESFLRACAKLVKPGGIL  157 (243)
T ss_pred             hhHHHccCCHHHHHHHHHHHcCCCcEE
Confidence                 44443 4688899999999975

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.90  E-value=0.14  Score=38.78  Aligned_cols=73  Identities=27%  Similarity=0.415  Sum_probs=52.7

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      |+|.|.|.+|...++.++..+. .+++++.++++.+.+++.|...+. -+.   .-.+.+++..-..++.++-+++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~~i~-gd~---~~~~~l~~a~i~~a~~vv~~~~~d   73 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVEVIY-GDA---TDPEVLERAGIEKADAVVILTDDD   73 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSEEEE-S-T---TSHHHHHHTTGGCESEEEEESSSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhccccccc-ccc---hhhhHHhhcCccccCEEEEccCCH
Confidence            5788999999999999999775 899999999999999998855333 221   222344444333788888887764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.075  Score=46.58  Aligned_cols=78  Identities=23%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceE--eCCCCCCchHHHHHHHHh--cCCccEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF--LNPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~--i~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      +.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ ++++....  .|..+ .+++.+.+.+..  .+++|++
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l   82 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD-PASFAAFLDAVEADLGPIDVL   82 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            578999987 9999999998888999 888888888876654 34441222  24332 233333333332  2478999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +.+.|.
T Consensus        83 i~~ag~   88 (273)
T PRK07825         83 VNNAGV   88 (273)
T ss_pred             EECCCc
Confidence            998874

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=95.88  E-value=0.05  Score=48.19  Aligned_cols=94  Identities=18%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             hHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce---Ee--CCCCCCchHH
Q 022819          183 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE---FL--NPNDNNEPVQ  253 (291)
Q Consensus       183 ~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~---~i--~~~~~~~~~~  253 (291)
                      ..+.+..++++|+++|=+|+| =|.+++-+|+..|. +|++++-+++..+.+++    .|...   ++  |+.+    + 
T Consensus        62 ~~~~~kl~L~~G~~lLDiGCG-WG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd----~-  134 (283)
T COG2230          62 DLILEKLGLKPGMTLLDIGCG-WGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD----F-  134 (283)
T ss_pred             HHHHHhcCCCCCCEEEEeCCC-hhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc----c-
Confidence            346788999999999999997 46677888888899 99999999999887765    45431   11  2221    1 


Q ss_pred             HHHHHHhcCCccEE-----EEccCC---hHHHHHHHHhhccCccc
Q 022819          254 QVIKRITDGGADYS-----FECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       254 ~~~~~~~~g~~d~v-----ld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                            . +.||-|     |+-+|.   +..++.+.+.|+++|++
T Consensus       135 ------~-e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~  172 (283)
T COG2230         135 ------E-EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM  172 (283)
T ss_pred             ------c-cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence                  1 135543     344554   56789999999999985

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.11  Score=44.76  Aligned_cols=79  Identities=20%  Similarity=0.268  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-hHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhc--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~-~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~~--  261 (291)
                      ++++++|+|+ |.+|..++..+...|. +|+++.++.+ +.+.+    +..+... .  .|..+ .++....+.+...  
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD-EESVAALMDTAREEF   82 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhC
Confidence            4578999987 9999999999888998 8888777543 33222    2223221 2  23332 2333333333322  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus        83 ~~~d~vi~~ag~   94 (248)
T PRK07806         83 GGLDALVLNASG   94 (248)
T ss_pred             CCCcEEEECCCC
Confidence            368998888764

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.062  Score=46.52  Aligned_cols=79  Identities=22%  Similarity=0.251  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H---cCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---FGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~---~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ +++|..++..+...|+ +|+.++++.++.+.+. +   .+... .  .|..+ ..+..+.+.+..  .+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ-HQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            4788999987 8999999999999999 8999988877665442 2   23221 2  23332 233333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        86 ~id~lv~~ag~   96 (253)
T PRK05867         86 GIDIAVCNAGI   96 (253)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.86  E-value=0.031  Score=49.83  Aligned_cols=42  Identities=19%  Similarity=0.342  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      ++++++|+|+|+.+.+++..+..+|+++++.+.++.+|.+.+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L  165 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL  165 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            578899999999999999999999998899999988876654

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.86  E-value=0.088  Score=46.41  Aligned_cols=79  Identities=20%  Similarity=0.354  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCC---hHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceEe--CCCCCCchHHHHHHHHhc--
Q 022819          193 KGSTVVIFGLG---TVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFL--NPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       193 ~~~~vlV~G~g---~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~i--~~~~~~~~~~~~~~~~~~--  261 (291)
                      +++++||.|++   ++|.++++.+...|+ +|+.++++++..+.+    +++|....+  |..+ ..+..+.+.+...  
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d-~~~v~~~~~~~~~~~   83 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED-IASVDAVFEALEKKW   83 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC-HHHHHHHHHHHHHHh
Confidence            46889999874   899999999999999 888887765322222    334533322  3332 1233333333322  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++++.|.
T Consensus        84 g~iD~lVnnAG~   95 (271)
T PRK06505         84 GKLDFVVHAIGF   95 (271)
T ss_pred             CCCCEEEECCcc
Confidence            479999999884

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=95.83  E-value=0.1  Score=45.25  Aligned_cols=97  Identities=16%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc----e--EeCCCCCCchHHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT----E--FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~----~--~i~~~~~~~~~~~~~~~~  259 (291)
                      .......+|++||-+++| .|..++.+++..|-.+|+++|-+++-++.+++--.+    .  .+.-+.      +.+- +
T Consensus        44 i~~~~~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA------e~LP-f  115 (238)
T COG2226          44 ISLLGIKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA------ENLP-F  115 (238)
T ss_pred             HHhhCCCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech------hhCC-C
Confidence            344456689999999776 788999999998766999999999999988763221    1  111110      1111 2


Q ss_pred             hcCCccEEEEccCC------hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIGD------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g~------~~~~~~~~~~l~~~G~i  290 (291)
                      .+..||+|.-+.|-      +..+++..+.|+|||++
T Consensus       116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~  152 (238)
T COG2226         116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRL  152 (238)
T ss_pred             CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEE
Confidence            33378887765553      56789999999999975

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=95.82  E-value=0.032  Score=46.62  Aligned_cols=93  Identities=15%  Similarity=0.133  Sum_probs=58.2

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhcCCccE
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      +.++.+||-+|+| .|..++.+++.....+|++++.+++..+.+++    .+.+.+ ....  .+..+ +..  .+.+|+
T Consensus        43 l~~g~~VLDiGcG-tG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~--~d~~~-~~~--~~~fDl  115 (187)
T PRK00107         43 LPGGERVLDVGSG-AGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNV-TVVH--GRAEE-FGQ--EEKFDV  115 (187)
T ss_pred             cCCCCeEEEEcCC-CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEe--ccHhh-CCC--CCCccE
Confidence            4458899999875 35555566654433399999999988777754    344321 1110  11111 111  237998


Q ss_pred             EEEccCC--hHHHHHHHHhhccCccc
Q 022819          267 SFECIGD--TGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~g~--~~~~~~~~~~l~~~G~i  290 (291)
                      |+-....  +..++.+.+.|+++|++
T Consensus       116 V~~~~~~~~~~~l~~~~~~LkpGG~l  141 (187)
T PRK00107        116 VTSRAVASLSDLVELCLPLLKPGGRF  141 (187)
T ss_pred             EEEccccCHHHHHHHHHHhcCCCeEE
Confidence            8864322  46788899999999986

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.82  E-value=0.054  Score=45.86  Aligned_cols=80  Identities=23%  Similarity=0.345  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-EeCCCCCCch---HHHHHHHHhcCCc
Q 022819          192 SKGSTVVIFGL--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FLNPNDNNEP---VQQVIKRITDGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~--g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i~~~~~~~~---~~~~~~~~~~g~~  264 (291)
                      +..+.|||.|+  |++|.+...=....|+ .|+++.++-+..+.+. ++|... -+|..+ +++   +...++..++|..
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~-~~~V~~v~~evr~~~~Gkl   82 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSK-PEEVVTVSGEVRANPDGKL   82 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCC-hHHHHHHHHHHhhCCCCce
Confidence            45678999975  8999999988889999 9999999988877665 666432 344433 122   3445556677789


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+.++..|.
T Consensus        83 d~L~NNAG~   91 (289)
T KOG1209|consen   83 DLLYNNAGQ   91 (289)
T ss_pred             EEEEcCCCC
Confidence            999998775

>PRK06196 oxidoreductase; Provisional

Probab=95.81  E-value=0.084  Score=47.54  Aligned_cols=79  Identities=24%  Similarity=0.337  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceE--eCCCCCCchHHHHHHHHhc--CCccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF--LNPNDNNEPVQQVIKRITD--GGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~--i~~~~~~~~~~~~~~~~~~--g~~d~  266 (291)
                      .+++++|+|+ |++|..++..+...|+ +|+.++++.++.+.+ +++.....  .|..+ ..+..+.+.+...  +++|+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d-~~~v~~~~~~~~~~~~~iD~  102 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD-LESVRAFAERFLDSGRRIDI  102 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC-HHHHHHHHHHHHhcCCCCCE
Confidence            4678999987 8999999998888999 899998888766543 22221122  23332 1333333443322  47999


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++.+.|.
T Consensus       103 li~nAg~  109 (315)
T PRK06196        103 LINNAGV  109 (315)
T ss_pred             EEECCCC
Confidence            9998874

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=95.80  E-value=0.084  Score=45.41  Aligned_cols=79  Identities=22%  Similarity=0.363  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--hHHHHHHcCCce-Ee--CCCCCCchHHHHHHHHhc--CCc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--KCEKAKAFGVTE-FL--NPNDNNEPVQQVIKRITD--GGA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~--~~~~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~~--g~~  264 (291)
                      +++++||.|+ |++|..++..+...|+ +|+.+++++.  ..+.+++++... .+  |..+ ..++...+.+...  +++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~   81 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSD-IEAIKALVDSAVEEFGHI   81 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcCCC
Confidence            4788999987 8999999999999999 8998887652  223334444322 22  3322 2333333333322  378


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus        82 d~li~~ag~   90 (248)
T TIGR01832        82 DILVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999998875

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.80  E-value=0.11  Score=49.27  Aligned_cols=79  Identities=20%  Similarity=0.332  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hhH-HHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP--EKC-EKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~--~~~-~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+.+++++  +++ +..++++... ..|..+ .......+....  .+++|
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA-PDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHHHHhCCCCC
Confidence            5789999987 9999999999999999 888887643  222 2334455433 234433 122222222222  23789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      ++|.+.|.
T Consensus       287 ~vi~~AG~  294 (450)
T PRK08261        287 IVVHNAGI  294 (450)
T ss_pred             EEEECCCc
Confidence            99999884

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.79  E-value=0.027  Score=47.33  Aligned_cols=94  Identities=17%  Similarity=0.209  Sum_probs=59.5

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHh-c
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRIT-D  261 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~-~  261 (291)
                      +.....++.+||-+|+| .|..++.+++. |. +|+++|.+++-++.+++.    +... +....  .++    .++. .
T Consensus        24 ~~l~~~~~~~vLDiGcG-~G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~--~d~----~~~~~~   93 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCG-NGRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAV--VDL----NNLTFD   93 (197)
T ss_pred             HhcccCCCCcEEEECCC-CCHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEe--cCh----hhCCcC
Confidence            33445567899999987 37777777774 77 999999999877766543    2221 11100  111    1111 2


Q ss_pred             CCccEEEEccCC--------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                      +.+|+|+.+..-        ...+....+.|++||.+
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~  130 (197)
T PRK11207         94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN  130 (197)
T ss_pred             CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence            369999875331        35677888899999973

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.75  E-value=0.11  Score=43.75  Aligned_cols=46  Identities=39%  Similarity=0.636  Sum_probs=39.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGV  239 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~  239 (291)
                      ++.+++|+|.|.+|..+++.+...|+ +|++++.++++.+.+++ +++
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~   73 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGA   73 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCC
Confidence            67899999999999999999999999 89999998887766543 454

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.11  Score=44.49  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|+|+ |++|..++..+...|+ +++++++++++.+.+.    +.+... ++  |..+ ..+..+.+.+..  .+
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   83 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD-PASVQRFFDAAAAALG   83 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            4688999987 9999999999999999 8888888877655332    223222 22  3332 122222222221  14


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        84 ~id~vi~~ag~   94 (250)
T PRK12939         84 GLDGLVNNAGI   94 (250)
T ss_pred             CCCEEEECCCC
Confidence            79999999885

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.088  Score=45.21  Aligned_cols=79  Identities=25%  Similarity=0.342  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      ++++++|.|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++++... .  .|..+ ..+....+.+..  .+.+|
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   82 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD-VAAQKALAQALAEAFGRLD   82 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence            4678999987 9999999999999999 899998887765544 3455432 2  23222 122222222221  24789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        83 ~vi~~ag~   90 (249)
T PRK06500         83 AVFINAGV   90 (249)
T ss_pred             EEEECCCC
Confidence            99998874

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.094  Score=45.68  Aligned_cols=79  Identities=22%  Similarity=0.254  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-----cCC-ce-E--eCCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGV-TE-F--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-----~g~-~~-~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      ++++++|.|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+     .+. .. .  .|..+ .++..+.+.+..  
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   84 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD-EADVAAFAAAVEAR   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC-HHHHHHHHHHHHHh
Confidence            4688999987 8999999999999999 89999998876654321     111 11 1  23332 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+.+|+++.+.|.
T Consensus        85 ~g~id~li~~Ag~   97 (265)
T PRK07062         85 FGGVDMLVNNAGQ   97 (265)
T ss_pred             cCCCCEEEECCCC
Confidence            2479999999884

>PRK07024 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.092  Score=45.63  Aligned_cols=78  Identities=17%  Similarity=0.167  Sum_probs=51.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCC--c-eE--eCCCCCCchHHHHHHHHhc--CCc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGV--T-EF--LNPNDNNEPVQQVIKRITD--GGA  264 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~--~-~~--i~~~~~~~~~~~~~~~~~~--g~~  264 (291)
                      +.++||+|+ |++|...+..+...|+ +|+.+++++++.+.+.+ +..  . ..  .|..+ .+++.+.+.+...  +.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~g~i   79 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD-ADALAAAAADFIAAHGLP   79 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC-HHHHHHHHHHHHHhCCCC
Confidence            468999986 9999999999888999 89999998887665433 221  1 12  23322 2333333333322  368


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus        80 d~lv~~ag~   88 (257)
T PRK07024         80 DVVIANAGI   88 (257)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.71  E-value=0.073  Score=46.12  Aligned_cols=79  Identities=25%  Similarity=0.390  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+    +..|... .+  |..+ .+++.+.+.+..  .+
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   86 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD-HDAVRAAIDAFEAEIG   86 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence            5789999987 9999999999888999 899998887765433    2223222 22  3332 233333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        87 ~~d~li~~ag~   97 (255)
T PRK07523         87 PIDILVNNAGM   97 (255)
T ss_pred             CCCEEEECCCC
Confidence            78999999875

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.099  Score=45.53  Aligned_cols=79  Identities=27%  Similarity=0.384  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-c--CCc-eEe--CCCCCCchHHHHHHHHh-cCCc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F--GVT-EFL--NPNDNNEPVQQVIKRIT-DGGA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~--g~~-~~i--~~~~~~~~~~~~~~~~~-~g~~  264 (291)
                      ++.++||+|+ |++|...+..+...|+ +|+++++++++.+.+.+ +  +.. ..+  |..+ .....+.+.... .+.+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~i   81 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS-EAGREAVLARAREMGGI   81 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHhcCCC
Confidence            4678999986 9999999999989998 89999998877665532 2  211 122  3322 122222222211 2578


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus        82 d~lv~~ag~   90 (263)
T PRK09072         82 NVLINNAGV   90 (263)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK08267 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.11  Score=45.09  Aligned_cols=77  Identities=22%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cC-Cc-e--EeCCCCCCchHHHHHHHHh---cCCcc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FG-VT-E--FLNPNDNNEPVQQVIKRIT---DGGAD  265 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g-~~-~--~i~~~~~~~~~~~~~~~~~---~g~~d  265 (291)
                      +++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+.+ ++ .. .  ..|..+ ..++.+.+.+..   .+.+|
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~~id   79 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD-RAAWDAALADFAAATGGRLD   79 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCC
Confidence            57899987 9999999998888998 89999988887665543 32 11 1  234432 233333333321   34789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        80 ~vi~~ag~   87 (260)
T PRK08267         80 VLFNNAGI   87 (260)
T ss_pred             EEEECCCC
Confidence            99999885

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.088  Score=45.56  Aligned_cols=78  Identities=24%  Similarity=0.293  Sum_probs=51.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-Ee--CCCCCCchHHHHHHHHh--cCC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-FL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      ++++||.|+ |++|...++.+...|+ +|+++++++++.+.+.+    .+... .+  |..+ +.+..+.+.+..  .+.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN-PEDVQKMVEQIDEKFGR   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence            468999987 8999999999999999 99999888776554432    22222 23  3322 233333333332  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        79 id~lI~~ag~   88 (252)
T PRK07677         79 IDALINNAAG   88 (252)
T ss_pred             ccEEEECCCC
Confidence            8999998874

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.70  E-value=0.11  Score=45.29  Aligned_cols=79  Identities=22%  Similarity=0.324  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCC---hHHHHHHHHHHHcCCCeEEEEcCChhhH---H-HHHHcCCceEe--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGLG---TVGLSVAQGAKARGASRIIGVDTNPEKC---E-KAKAFGVTEFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~g---~~G~~~i~~a~~~g~~~vi~~~~~~~~~---~-~a~~~g~~~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|++   ++|.++++.+...|+ +|+.++++++..   + ..++++....+  |..+ ..+..+.+.+..  .
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~   86 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE-PGQLEAVFARIAEEW   86 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC-HHHHHHHHHHHHHHc
Confidence            46889999863   899999999888999 888887775432   2 22334432333  3322 233333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus        87 g~ld~lv~nAg~   98 (258)
T PRK07533         87 GRLDFLLHSIAF   98 (258)
T ss_pred             CCCCEEEEcCcc
Confidence            479999998874

>PRK08317 hypothetical protein; Provisional

Probab=95.69  E-value=0.029  Score=47.93  Aligned_cols=98  Identities=17%  Similarity=0.268  Sum_probs=65.1

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~----g~~~-~i~~~~~~~~~~~~~~~  258 (291)
                      +.+..++.++++||.+|+|. |..+..+++..+ ..++++++.+++.++.+++.    +... ++..+.  .+.     .
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~--~~~-----~   82 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA--DGL-----P   82 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc--ccC-----C
Confidence            34567788999999999975 888888888763 23899999999988888764    1111 111111  110     1


Q ss_pred             HhcCCccEEEEc-----cC-ChHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFEC-----IG-DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~-----~g-~~~~~~~~~~~l~~~G~i  290 (291)
                      +..+.+|.|+-.     .. ....+..+.++|+++|.+
T Consensus        83 ~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l  120 (241)
T PRK08317         83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRV  120 (241)
T ss_pred             CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEE
Confidence            222478877753     22 245788999999999975

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.092  Score=45.17  Aligned_cols=79  Identities=23%  Similarity=0.339  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HH---cCCc-e--EeCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA---FGVT-E--FLNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~---~g~~-~--~i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ ++   .+.. .  ..|..+ .......+.+..  .+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   82 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD-PDSAKAMADATVSAFG   82 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence            4678999987 9999999998888998 899998887654333 22   2221 1  223322 122222222221  13


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|++|.+.|.
T Consensus        83 ~id~vi~~ag~   93 (250)
T PRK07774         83 GIDYLVNNAAI   93 (250)
T ss_pred             CCCEEEECCCC
Confidence            68999999884

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.68  E-value=0.12  Score=44.33  Aligned_cols=80  Identities=26%  Similarity=0.321  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce----EeCCCCC-Cch---HHHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE----FLNPNDN-NEP---VQQVIKRI  259 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~----~i~~~~~-~~~---~~~~~~~~  259 (291)
                      ++++++|+|+ |++|...++.+...|+ +|+.+++++++.+.+.    +.+...    ..|..+. ..+   +.+.+.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            4578999987 9999999999988999 8999999887655432    222111    1232211 122   23333333


Q ss_pred             hcCCccEEEEccCC
Q 022819          260 TDGGADYSFECIGD  273 (291)
Q Consensus       260 ~~g~~d~vld~~g~  273 (291)
                      ..+.+|+++.+.|.
T Consensus        84 ~~~~id~vi~~ag~   97 (239)
T PRK08703         84 TQGKLDGIVHCAGY   97 (239)
T ss_pred             hCCCCCEEEEeccc
Confidence            32578999999884

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.67  E-value=0.12  Score=48.42  Aligned_cols=73  Identities=23%  Similarity=0.336  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      -.+.++||+|+|-+|..++..+...|...|+..-++.+|.. +++++|+. ++..    ++....+.     .+|+||-+
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l----~el~~~l~-----~~DvViss  245 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVAL----EELLEALA-----EADVVISS  245 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecH----HHHHHhhh-----hCCEEEEe
Confidence            36788999999999999999999999878888888877744 67888843 3322    22333333     48999999


Q ss_pred             cCCh
Q 022819          271 IGDT  274 (291)
Q Consensus       271 ~g~~  274 (291)
                      ++.+
T Consensus       246 Tsa~  249 (414)
T COG0373         246 TSAP  249 (414)
T ss_pred             cCCC
Confidence            9874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.66  E-value=0.067  Score=46.41  Aligned_cols=99  Identities=18%  Similarity=0.167  Sum_probs=69.2

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~  259 (291)
                      +....++.++++|+=.|.| .|.++.-+|++.|. .+|+..+..++..+.|++    +|....+....  .|.    .+.
T Consensus        86 I~~~~gi~pg~rVlEAGtG-SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~--~Dv----~~~  158 (256)
T COG2519          86 IVARLGISPGSRVLEAGTG-SGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL--GDV----REG  158 (256)
T ss_pred             HHHHcCCCCCCEEEEcccC-chHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe--ccc----ccc
Confidence            3456788999999888775 57788888887765 599999999998887754    44433221111  222    221


Q ss_pred             hcC-Ccc-EEEEccCChHHHHHHHHhhccCccc
Q 022819          260 TDG-GAD-YSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g-~~d-~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ... .+| +++|--.....++.+.+.|++||++
T Consensus       159 ~~~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~  191 (256)
T COG2519         159 IDEEDVDAVFLDLPDPWNVLEHVSDALKPGGVV  191 (256)
T ss_pred             ccccccCEEEEcCCChHHHHHHHHHHhCCCcEE
Confidence            122 687 5677777778999999999999875

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.095  Score=45.71  Aligned_cols=79  Identities=20%  Similarity=0.344  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      ++++++|.|+ |++|..++..+...|+ +|+.++++.++.+.+ ++++... .  .|..+ +.++.+.+.+..  .+.+|
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id   82 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD-DAAIERAVATVVARFGRVD   82 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence            4678999987 8999999999999999 999999887765544 4444322 2  23332 233333333322  24789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        83 ~lv~~ag~   90 (261)
T PRK08265         83 ILVNLACT   90 (261)
T ss_pred             EEEECCCC
Confidence            99998874

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.13  Score=44.08  Aligned_cols=80  Identities=18%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      .+.++++|.|+ |.+|..++..+...|. +|+++++++++.+.+.    +.+... ++  |..+ .+++...+.+..  .
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   81 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN-PEAIAPGIAELLEQF   81 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            35678999987 9999999999999999 8999999877654432    222222 22  3322 133333333322  1


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus        82 ~~id~lv~~ag~   93 (241)
T PRK07454         82 GCPDVLINNAGM   93 (241)
T ss_pred             CCCCEEEECCCc
Confidence            368999999884

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.63  E-value=0.06  Score=53.77  Aligned_cols=76  Identities=25%  Similarity=0.324  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh---------------------hHHHHHHcCCceEeCCCCCC-
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE---------------------KCEKAKAFGVTEFLNPNDNN-  249 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~---------------------~~~~a~~~g~~~~i~~~~~~-  249 (291)
                      ..+++|+|+|+|+.|++++..+..+|. .|++++..+.                     +.+.++++|+....+..-.. 
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            357899999999999999999999999 7888876532                     34566777875544432111 


Q ss_pred             chHHHHHHHHhcCCccEEEEccCC
Q 022819          250 EPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      ... +.+.    ..+|.||.++|.
T Consensus       404 i~~-~~~~----~~~DavilAtGa  422 (654)
T PRK12769        404 ISL-ESLL----EDYDAVFVGVGT  422 (654)
T ss_pred             CCH-HHHH----hcCCEEEEeCCC
Confidence            111 1111    268999998886

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.63  E-value=0.1  Score=45.23  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      .+++++|.|+ |++|..+++.+...|+ +|+.+.+ +++..+.++..+... ..|..+ ..+..+.+.+..  .+++|++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~l   83 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN-RDQVKKSKEVVEKEFGRVDVL   83 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            4688999987 9999999999999999 7776644 344444444433322 223332 233333343332  2478999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +.+.|.
T Consensus        84 i~~ag~   89 (255)
T PRK06463         84 VNNAGI   89 (255)
T ss_pred             EECCCc
Confidence            998875

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.087  Score=45.68  Aligned_cols=79  Identities=16%  Similarity=0.215  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH---cCCce-E--eCCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA---FGVTE-F--LNPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~---~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||+|+ |++|..+++.+...|+ +++.+++++++.+..++   .+... .  .|..+ .......+.+..  .++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   83 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD-DAQCRDAVEQTVAKFGR   83 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhcCC
Confidence            4678999987 8999999999888999 78888887776544433   23222 2  23322 122333333322  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        84 id~vi~~ag~   93 (258)
T PRK08628         84 IDGLVNNAGV   93 (258)
T ss_pred             CCEEEECCcc
Confidence            8999999884

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.099  Score=45.25  Aligned_cols=79  Identities=20%  Similarity=0.290  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|.|+ |++|..++..+...|+ +|+.+++++++.+.+.    +.+... .+  |..+ .++....+.+..  .+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   82 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD-EAYAKALVALAVERFG   82 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence            4678999987 8999999999888999 8999988887765442    233322 22  3322 122333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        83 ~id~li~~ag~   93 (254)
T PRK07478         83 GLDIAFNNAGT   93 (254)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.59  E-value=0.025  Score=47.95  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=64.9

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhc-
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITD-  261 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~~-  261 (291)
                      .+....++||-+|.+ .|+.++.+|+.+  +. +|+.++.++++.+.+++    .|...-+....  .+..+.+.++.. 
T Consensus        41 ~~~~~~k~vLEIGt~-~GySal~la~~l~~~g-~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~--gda~~~l~~l~~~  116 (205)
T PF01596_consen   41 VRLTRPKRVLEIGTF-TGYSALWLAEALPEDG-KITTIEIDPERAEIARENFRKAGLDDRIEVIE--GDALEVLPELAND  116 (205)
T ss_dssp             HHHHT-SEEEEESTT-TSHHHHHHHHTSTTTS-EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE--S-HHHHHHHHHHT
T ss_pred             HHhcCCceEEEeccc-cccHHHHHHHhhcccc-eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE--eccHhhHHHHHhc
Confidence            334566899999875 688999999987  45 99999999999888855    45433222211  334444554432 


Q ss_pred             ---CCccEEE-EccCC--hHHHHHHHHhhccCccc
Q 022819          262 ---GGADYSF-ECIGD--TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 ---g~~d~vl-d~~g~--~~~~~~~~~~l~~~G~i  290 (291)
                         +.||.|| |+--.  ...++.++++|++||.|
T Consensus       117 ~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvi  151 (205)
T PF01596_consen  117 GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVI  151 (205)
T ss_dssp             TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEE
T ss_pred             cCCCceeEEEEcccccchhhHHHHHhhhccCCeEE
Confidence               3699665 44332  45688899999999865

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.58  E-value=0.13  Score=43.92  Aligned_cols=79  Identities=25%  Similarity=0.396  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhc--C
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~~--g  262 (291)
                      +++++||+|+ |.+|...+..+...|. +|+.+.+++++.+.+    +..+... .  .|..+ ...+...+.+...  +
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD-EAAVRALIEAAVEAFG   81 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            3568999987 9999999999888999 799999887765433    2334322 2  23332 2333333433321  3


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|.++.+.|.
T Consensus        82 ~id~vi~~ag~   92 (246)
T PRK05653         82 ALDILVNNAGI   92 (246)
T ss_pred             CCCEEEECCCc
Confidence            68999998865

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.58  E-value=0.1  Score=45.06  Aligned_cols=80  Identities=20%  Similarity=0.266  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-c---CCce---EeCCCCCCchHHHHHHHHhc--
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F---GVTE---FLNPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~---g~~~---~i~~~~~~~~~~~~~~~~~~--  261 (291)
                      -++++++|.|+ |++|..++..+...|+ +|+.+++++++.+.+.+ +   +...   ..|..+ ..++...+.+...  
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD-EDQCANLVALALERF   80 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC-HHHHHHHHHHHHHHc
Confidence            35688999987 8999999999999999 89999888876554422 2   3221   223322 2333333333221  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus        81 g~~d~vi~~ag~   92 (258)
T PRK07890         81 GRVDALVNNAFR   92 (258)
T ss_pred             CCccEEEECCcc
Confidence            478999998874

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.16  Score=46.36  Aligned_cols=79  Identities=27%  Similarity=0.238  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|+|+ |++|..+++.+...|+ +|+.+++++++++.+    ++.|... .  .|..+ ..+..+.+.+..  .+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d-~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD-AEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHHHCC
Confidence            4678999987 9999999999999999 899998988776543    2345433 2  24332 123333333222  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        85 ~iD~lInnAg~   95 (334)
T PRK07109         85 PIDTWVNNAMV   95 (334)
T ss_pred             CCCEEEECCCc
Confidence            79999999884

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.55  E-value=0.11  Score=41.43  Aligned_cols=48  Identities=35%  Similarity=0.502  Sum_probs=37.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcCC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK-AKAFGV  239 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~-a~~~g~  239 (291)
                      .++.+++|+|+|.+|...++.+...|...+++++++.++.+. +++++.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~   65 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE   65 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            456889999999999999998888874489999988877654 445543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06483 dihydromonapterin reductase; Provisional

Probab=95.54  E-value=0.14  Score=43.84  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-HHHHHHcCCce-EeCCCCCCchHHHHHHHHhc--CCccEEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYSF  268 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~~--g~~d~vl  268 (291)
                      ++++||.|+ +++|..+++.+...|+ +|+.+++++++ .+.++..++.. ..|..+ ..+....+.+...  +++|+++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~lv   79 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST-NAGIMAFIDELKQHTDGLRAII   79 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC-HHHHHHHHHHHHhhCCCccEEE
Confidence            468999987 8999999999888999 88888876643 33344455322 223322 2333333333322  3689999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        80 ~~ag~   84 (236)
T PRK06483         80 HNASD   84 (236)
T ss_pred             ECCcc
Confidence            98874

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.54  E-value=0.19  Score=43.10  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|.|+ +++|++++..+...|+ +|+.+++++++++.+    ++.+... .+  |..+ .++..+.+.+..  -+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS-QESIRHLFDAIEQQFN   81 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            4678999987 7999999999989999 899999888876543    2334332 22  3222 233333333322  14


Q ss_pred             -CccEEEEccC
Q 022819          263 -GADYSFECIG  272 (291)
Q Consensus       263 -~~d~vld~~g  272 (291)
                       .+|+++.+.|
T Consensus        82 ~~iD~li~nag   92 (227)
T PRK08862         82 RAPDVLVNNWT   92 (227)
T ss_pred             CCCCEEEECCc
Confidence             7999999986

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.53  E-value=0.16  Score=45.31  Aligned_cols=42  Identities=26%  Similarity=0.352  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      ++++++|+|+|+.+++++..+..+|+.+++.+.++.+|.+.+
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L  167 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence            468899999999999999988889998899999988876654

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.14  Score=44.54  Aligned_cols=81  Identities=20%  Similarity=0.347  Sum_probs=50.7

Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhh-HHH----HHHcCC-c-eEe--CCCCCCchHHHHHHHH
Q 022819          191 ISKGSTVVIFGL-GTVGLSVAQGAKARG-ASRIIGVDTNPEK-CEK----AKAFGV-T-EFL--NPNDNNEPVQQVIKRI  259 (291)
Q Consensus       191 ~~~~~~vlV~G~-g~~G~~~i~~a~~~g-~~~vi~~~~~~~~-~~~----a~~~g~-~-~~i--~~~~~~~~~~~~~~~~  259 (291)
                      +..++++||.|+ |++|..+++-+...| + +|+.+++++++ ++.    +++.+. . .++  |..+ ..+..+.+.+.
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~-~~~~~~~~~~~   82 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD-TDSHPKVIDAA   82 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC-hHHHHHHHHHH
Confidence            456789999987 899999998777775 7 89998887764 332    233332 1 222  3322 23333333333


Q ss_pred             hc-CCccEEEEccCC
Q 022819          260 TD-GGADYSFECIGD  273 (291)
Q Consensus       260 ~~-g~~d~vld~~g~  273 (291)
                      .. +.+|+++.+.|.
T Consensus        83 ~~~g~id~li~~ag~   97 (253)
T PRK07904         83 FAGGDVDVAIVAFGL   97 (253)
T ss_pred             HhcCCCCEEEEeeec
Confidence            22 479999887765

>PRK06194 hypothetical protein; Provisional

Probab=95.52  E-value=0.099  Score=46.12  Aligned_cols=79  Identities=22%  Similarity=0.314  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHc---CCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---GVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~---g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ |++|..++..+...|+ +|+.++++.++++.+ +++   +... ++  |..+ ..++.+.+.+..  .+
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD-AAQVEALADAALERFG   82 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            3578999987 9999999999988999 899998877654433 222   3322 22  3322 123333333221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        83 ~id~vi~~Ag~   93 (287)
T PRK06194         83 AVHLLFNNAGV   93 (287)
T ss_pred             CCCEEEECCCC
Confidence            78999999885

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.51  E-value=0.13  Score=44.96  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHh-cCC
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRIT-DGG  263 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~~i~~~~~~~~~~~~~~~~~-~g~  263 (291)
                      .....+.++++||-+|+| .|..+..+++.....+|++++.+++.++.+++.-.. .++..+     .    ..+. ...
T Consensus        24 l~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d-----~----~~~~~~~~   93 (258)
T PRK01683         24 LARVPLENPRYVVDLGCG-PGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEAD-----I----ASWQPPQA   93 (258)
T ss_pred             HhhCCCcCCCEEEEEccc-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECc-----h----hccCCCCC
Confidence            344566788999999886 466677777776434999999999988888764221 122211     1    1111 237


Q ss_pred             ccEEEEccC-----C-hHHHHHHHHhhccCccc
Q 022819          264 ADYSFECIG-----D-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g-----~-~~~~~~~~~~l~~~G~i  290 (291)
                      +|+|+-...     . ...+..+.+.|++||++
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~  126 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVL  126 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEE
Confidence            888875433     1 35688888999999975

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.50  E-value=0.11  Score=44.96  Aligned_cols=79  Identities=27%  Similarity=0.278  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH---cCCce---EeCCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA---FGVTE---FLNPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~---~g~~~---~i~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++...+..++   .+...   ..|..+ ..+....+.+..  .+.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   84 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET-YAGAQAAMAAAVEAFGR   84 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC-HHHHHHHHHHHHHHcCC
Confidence            4678999987 8999999999999999 89999887543333333   23322   223332 123333333332  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        85 id~lv~nAg~   94 (260)
T PRK12823         85 IDVLINNVGG   94 (260)
T ss_pred             CeEEEECCcc
Confidence            9999998873

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=95.49  E-value=0.12  Score=45.20  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=66.3

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh--
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~--  260 (291)
                      ..+....++||-+|.+ +|+.++.+|+.++. .+++.++.+++..+.+++    .|...-+....  .+..+.+.++.  
T Consensus        74 l~~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~--G~a~e~L~~l~~~  150 (247)
T PLN02589         74 LLKLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE--GPALPVLDQMIED  150 (247)
T ss_pred             HHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe--ccHHHHHHHHHhc
Confidence            3445566789999874 78888889987732 289999999988877754    45433222222  33445555543  


Q ss_pred             ---cCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 ---DGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ---~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                         .+.||.||-=...   ...++.++++|++||.|
T Consensus       151 ~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGvi  186 (247)
T PLN02589        151 GKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVI  186 (247)
T ss_pred             cccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEE
Confidence               1479976643222   45688889999999875

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.49  E-value=0.12  Score=41.46  Aligned_cols=79  Identities=25%  Similarity=0.347  Sum_probs=50.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC--hhhHHHH----HHcCCce-EeCCCC-CCchHHHHHHHHh--cCC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN--PEKCEKA----KAFGVTE-FLNPND-NNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~--~~~~~~a----~~~g~~~-~i~~~~-~~~~~~~~~~~~~--~g~  263 (291)
                      +++||+|+ +++|+..++.+...|..+|+.+.++  .++.+.+    +..+... ++..+- +.++....+.+..  .+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47899987 8999999988888877688888888  4443322    3344322 222221 1234444444443  248


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|++|.+.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999999886

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.14  Score=43.65  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=49.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      +++|.|+ |++|...++.+...|+ +|+.+++++++.+.+ ++++...+ .|..+ ..++.+.+++.. +.+|+++.+.|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~-~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD-PASLEEARGLFP-HHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC-HHHHHHHHHHHh-hcCcEEEECCC
Confidence            4788887 8999999999988999 899998988876654 34443322 33332 123333333332 26899998865

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=95.48  E-value=0.096  Score=44.67  Aligned_cols=96  Identities=19%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceEeC-------CCCCCch-HHHHHHHHh--
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLN-------PNDNNEP-VQQVIKRIT--  260 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~i~-------~~~~~~~-~~~~~~~~~--  260 (291)
                      .++.+||+.|+| .|.-++-+|. .|. .|+++|.++.-++.+ ++.+......       +.....+ ....+.++.  
T Consensus        33 ~~~~rvLd~GCG-~G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPLCG-KSLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeCCC-chhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            567899999987 6777777775 699 999999999988875 3333221100       0000000 000000111  


Q ss_pred             -cCCccEEEEccCC--------hHHHHHHHHhhccCccc
Q 022819          261 -DGGADYSFECIGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 -~g~~d~vld~~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                       .+.+|.|+|+..-        +..++...++|++||++
T Consensus       110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~  148 (213)
T TIGR03840       110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQ  148 (213)
T ss_pred             cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeE
Confidence             1368999996531        34688999999999974

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.056  Score=47.28  Aligned_cols=77  Identities=22%  Similarity=0.375  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      .+++++|.|+ |.+|..+++.+...|+ +|++++++.++.+...  +... ..|..+ .+++.+.+.+..  .+.+|+++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~D~~d-~~~~~~~~~~~~~~~g~~d~li   78 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPIP--GVELLELDVTD-DASVQAAVDEVIARAGRIDVLV   78 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccccC--CCeeEEeecCC-HHHHHHHHHHHHHhCCCCCEEE
Confidence            3568999987 9999999999888999 8999988776543321  2222 223332 233444444332  24789999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        79 ~~ag~   83 (270)
T PRK06179         79 NNAGV   83 (270)
T ss_pred             ECCCC
Confidence            99885

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.47  E-value=0.23  Score=41.40  Aligned_cols=75  Identities=31%  Similarity=0.408  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-c----CCce-EeCCCCCCchHHHHHHHHhcCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F----GVTE-FLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~----g~~~-~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      ++.+++|+|+ |.+|..++..+...|. +|+.+.++.++.+.+.+ +    +... ..+..+ ..+..+.+     .++|
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~-----~~~d   99 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD-DAARAAAI-----KGAD   99 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC-HHHHHHHH-----hcCC
Confidence            5678999986 9999999888888887 89888888877655432 2    2221 112211 12222222     2579


Q ss_pred             EEEEccCCh
Q 022819          266 YSFECIGDT  274 (291)
Q Consensus       266 ~vld~~g~~  274 (291)
                      +||.+++..
T Consensus       100 iVi~at~~g  108 (194)
T cd01078         100 VVFAAGAAG  108 (194)
T ss_pred             EEEECCCCC
Confidence            999887753

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.46  E-value=0.16  Score=44.45  Aligned_cols=94  Identities=19%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh-cC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT-DG  262 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~-~g  262 (291)
                      +.......++++||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++.+... +..     +.    .++. .+
T Consensus        21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~-~~~-----d~----~~~~~~~   88 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDA-RTG-----DV----RDWKPKP   88 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcE-EEc-----Ch----hhCCCCC
Confidence            34555667889999998863 66677777765 55 8999999999998888765432 221     11    1111 23


Q ss_pred             CccEEEEccC-----C-hHHHHHHHHhhccCccc
Q 022819          263 GADYSFECIG-----D-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g-----~-~~~~~~~~~~l~~~G~i  290 (291)
                      .||+|+-...     . ...+..+.+.|++||++
T Consensus        89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l  122 (255)
T PRK14103         89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWI  122 (255)
T ss_pred             CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEE
Confidence            7998887432     2 45678888999999986

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.45  E-value=0.12  Score=44.71  Aligned_cols=79  Identities=20%  Similarity=0.387  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|.|+ |++|..++..+...|+ +|+.+++++++.+.+    ++.+... .+  |..+ ..+....+.+..  .+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTR-DAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence            4689999987 8999999998888898 899999887765433    2334322 22  3322 122323332221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        84 ~id~li~~ag~   94 (253)
T PRK06172         84 RLDYAFNNAGI   94 (253)
T ss_pred             CCCEEEECCCC
Confidence            78999998874

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.45  E-value=0.05  Score=45.67  Aligned_cols=94  Identities=11%  Similarity=0.091  Sum_probs=57.4

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhcC
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      +.....++.+||-+|+| .|..++.+++ .|. +|+++|.+++-++.+++.    +.......    .+... . .+ .+
T Consensus        24 ~~~~~~~~~~vLDiGcG-~G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~----~d~~~-~-~~-~~   93 (195)
T TIGR00477        24 EAVKTVAPCKTLDLGCG-QGRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLPLRTDA----YDINA-A-AL-NE   93 (195)
T ss_pred             HHhccCCCCcEEEeCCC-CCHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEe----ccchh-c-cc-cC
Confidence            34444556789999886 5666666666 477 999999999877766542    32211100    11100 0 11 23


Q ss_pred             CccEEEEccC-----C---hHHHHHHHHhhccCccc
Q 022819          263 GADYSFECIG-----D---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g-----~---~~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+.+.-     .   +..+..+.+.|++||.+
T Consensus        94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  129 (195)
T TIGR00477        94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYN  129 (195)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEE
Confidence            6898876421     1   35677888899999973

Part of a tellurite-reducing operon tehA and tehB

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.45  E-value=0.15  Score=44.10  Aligned_cols=80  Identities=24%  Similarity=0.322  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHH----HHHHcCCce---EeCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE----KAKAFGVTE---FLNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~----~a~~~g~~~---~i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|.|+ |++|..+++.+...|++.|+.++++.++..    .+++.+...   ..|..+ .+.+.+.+....  .+
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD-VEDCRRVVAAADEAFG   83 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            5688999987 899999999999999944999988776554    223344332   123332 122333333221  14


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        84 ~id~li~~ag~   94 (260)
T PRK06198         84 RLDALVNAAGL   94 (260)
T ss_pred             CCCEEEECCCc
Confidence            79999999885

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.13  Score=46.37  Aligned_cols=79  Identities=23%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc-----CCc-eE--eCCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF-----GVT-EF--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~-----g~~-~~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      ++++++|+|+ +++|.+++..+...|+ +|+.+.++.++.+.+. ++     +.. .+  .|..+ ..+..+.+.++.  
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d-~~sv~~~~~~~~~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS-LASVAALGEQLRAE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC-HHHHHHHHHHHHHh
Confidence            4688999987 8999999998888999 8998888877654332 22     111 12  23332 122333333332  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+.+|+++.+.|.
T Consensus        91 ~~~iD~li~nAG~  103 (313)
T PRK05854         91 GRPIHLLINNAGV  103 (313)
T ss_pred             CCCccEEEECCcc
Confidence            2378999998874

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.2  Score=43.48  Aligned_cols=77  Identities=23%  Similarity=0.315  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-c----CCce-Ee--CCCCCCchHHHHHHHHhcCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F----GVTE-FL--NPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~----g~~~-~i--~~~~~~~~~~~~~~~~~~g~  263 (291)
                      +++++||.|+ +++|..+++.+...|+ +|+.+++++++.+.+.+ +    +... .+  |..+ ..+..+.+.++  +.
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--g~   81 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS-PEAREQLAAEA--GD   81 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHh--CC
Confidence            4689999987 8999999999989999 99999988776654321 1    3221 22  3322 23333333332  47


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        82 id~lv~~ag~   91 (259)
T PRK06125         82 IDILVNNAGA   91 (259)
T ss_pred             CCEEEECCCC
Confidence            9999998875

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.41  E-value=0.13  Score=46.30  Aligned_cols=45  Identities=29%  Similarity=0.614  Sum_probs=38.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      .+|.|+|+|.+|.+.+..++..|. .+|+++++++++.+.+++.|.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~   52 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL   52 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC
Confidence            579999999999999998888884 379999999998888888775

>PLN03075 nicotianamine synthase; Provisional

Probab=95.41  E-value=0.082  Score=47.29  Aligned_cols=94  Identities=15%  Similarity=0.093  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCC-----ceEeCCCCCCchHHHHHHHHhcCCccE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGV-----TEFLNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g~-----~~~i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      ++++|+-+|+|+.++.++.+++.+.. .+++.+|.+++..+.+++.-.     ..-+.+..  .+..+....  .+.||+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~--~Da~~~~~~--l~~FDl  198 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT--ADVMDVTES--LKEYDV  198 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE--Cchhhcccc--cCCcCE
Confidence            77899999999999988888875532 389999999999988877431     11111111  122111101  247998


Q ss_pred             EEEcc-------CChHHHHHHHHhhccCccc
Q 022819          267 SFECI-------GDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~-------g~~~~~~~~~~~l~~~G~i  290 (291)
                      ||-.+       .-...+....+.|++||.+
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~L  229 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALL  229 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcCCCcEE
Confidence            88764       2246788999999999975

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.41  E-value=0.17  Score=43.99  Aligned_cols=35  Identities=31%  Similarity=0.456  Sum_probs=30.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +.+|+|+|+|++|..++..+..+|..+++.+|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            36799999999999999999999998888887543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.12  Score=44.91  Aligned_cols=79  Identities=20%  Similarity=0.276  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc-----CCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF-----GVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~-----g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      +++++||.|+ |++|..++..+...|+ +|+.+++++++.+.+. ++     +... .+  |..+ ..++...+.+..  
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   83 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD-AASVAAAVAAAEEA   83 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            4688999987 8999999999999999 8999988877655432 22     2211 22  3322 233333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+.+|+++.+.|.
T Consensus        84 ~g~id~li~~ag~   96 (260)
T PRK07063         84 FGPLDVLVNNAGI   96 (260)
T ss_pred             hCCCcEEEECCCc
Confidence            2479999998884

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.40  E-value=0.16  Score=40.10  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=28.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      +|+|+|+|++|...+..+...|..++..+|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            47899999999999999999999888888754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08589 short chain dehydrogenase; Validated

Probab=95.40  E-value=0.12  Score=45.49  Aligned_cols=79  Identities=23%  Similarity=0.304  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH---cCCce---EeCCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA---FGVTE---FLNPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~---~g~~~---~i~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.++++++..+.+++   .+...   ..|..+ ..+....+.+..  .+.
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~   82 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISD-EQQVKDFASEIKEQFGR   82 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence            4678999987 8999999998888999 89999888333233333   23221   233332 123333333332  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        83 id~li~~Ag~   92 (272)
T PRK08589         83 VDVLFNNAGV   92 (272)
T ss_pred             cCEEEECCCC
Confidence            8999998874

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.21  Score=43.67  Aligned_cols=79  Identities=23%  Similarity=0.270  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|..+++.+...|+ +|+.+++++++.+..    .+.+... .  .|..+ ..+....+++..  .+
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD-YAAVEAAFAQIADEFG   85 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            5789999987 8999999999999999 899998887765433    2223221 2  23332 233334444432  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        86 ~iD~vi~~ag~   96 (264)
T PRK07576         86 PIDVLVSGAAG   96 (264)
T ss_pred             CCCEEEECCCC
Confidence            78999988763

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.39  E-value=0.2  Score=43.39  Aligned_cols=79  Identities=22%  Similarity=0.341  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh--HHHHHHcCCce-E--eCCCCCCchHHHHHHHHh--cCCc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~--~~~a~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++..  .+.+++.+... .  .|..+ +.+..+.+.+..  .+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~i   84 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ-QKDIDSIVSQAVEVMGHI   84 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC-HHHHHHHHHHHHHHcCCC
Confidence            4788999987 8999999999999999 88888765422  22334444332 2  24332 233333333322  2479


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus        85 D~lv~~ag~   93 (251)
T PRK12481         85 DILINNAGI   93 (251)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK00811 spermidine synthase; Provisional

Probab=95.38  E-value=0.081  Score=47.16  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC------C---ceE-eCCCCCCchHHHHHHHHhc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG------V---TEF-LNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g------~---~~~-i~~~~~~~~~~~~~~~~~~  261 (291)
                      .++++||++|+|. |..+..+++..+.++|.+++.+++-.+.+++.-      .   +.+ +..    .+..+.+.. ..
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~----~Da~~~l~~-~~  148 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI----GDGIKFVAE-TE  148 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE----CchHHHHhh-CC
Confidence            4568899998763 666667777767779999999999888887631      1   111 111    233344443 34


Q ss_pred             CCccEEEEccCC----------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      +.+|+|+--...          .+.++.+.+.|+++|.+
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvl  187 (283)
T PRK00811        149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIF  187 (283)
T ss_pred             CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEE
Confidence            489987753211          34567888999999975

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.38  E-value=0.11  Score=46.04  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc------eEeCCCCCCch---HHHHHH
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT------EFLNPNDNNEP---VQQVIK  257 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~------~~i~~~~~~~~---~~~~~~  257 (291)
                      -+++++||.|+ .++|.+++..+...|+ +|+.+++++++.+...+    .+..      ...|... +++   ..+...
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~l~~~~~   83 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSK-EVDVEKLVEFAV   83 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCC-HHHHHHHHHHHH
Confidence            36788999987 7999999999999999 99999999887655432    2222      1233332 122   222223


Q ss_pred             HHhcCCccEEEEccCC
Q 022819          258 RITDGGADYSFECIGD  273 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~  273 (291)
                      +...|.+|+.+++.|.
T Consensus        84 ~~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   84 EKFFGKIDILVNNAGA   99 (270)
T ss_pred             HHhCCCCCEEEEcCCc
Confidence            3334689999998875

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.38  E-value=0.13  Score=47.08  Aligned_cols=36  Identities=22%  Similarity=0.376  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+.+|+|+|+|++|..++..+..+|..++..+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            346799999999999999999999998888888753

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.38  E-value=0.12  Score=44.49  Aligned_cols=79  Identities=22%  Similarity=0.290  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc--CCc-eEe--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF--GVT-EFL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~--g~~-~~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      ++++++|.|+ |.+|..+++.+...|+ +|+.+.++.++.+... ++  +.. ..+  |..+ .....+.+.+..  .+.
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~   81 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS-AEAVEALVDFVAARWGR   81 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999998888898 8999988876654332 22  222 122  3322 123333333322  147


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        82 id~vi~~ag~   91 (252)
T PRK06138         82 LDVLVNNAGF   91 (252)
T ss_pred             CCEEEECCCC
Confidence            8999998884

>PRK08643 acetoin reductase; Validated

Probab=95.37  E-value=0.17  Score=43.73  Aligned_cols=78  Identities=18%  Similarity=0.280  Sum_probs=50.6

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-Ee--CCCCCCchHHHHHHHHh--cCC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-FL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      ++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+.+    .+... .+  |..+ .+...+.+.+..  .++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   79 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD-RDQVFAAVRQVVDTFGD   79 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence            568899987 8999999999999999 89999888776544322    23222 22  3322 123333333322  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        80 id~vi~~ag~   89 (256)
T PRK08643         80 LNVVVNNAGV   89 (256)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.36  E-value=0.14  Score=44.39  Aligned_cols=79  Identities=23%  Similarity=0.414  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHhc--C
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRITD--G  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~~--g  262 (291)
                      +++++||.|+ |.+|..+++.+...|+ +|+.++++.++.+.+.    ..+... .  .|..+ .+++.+.+.+...  +
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d-~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD-EADIERLAEETLERFG   88 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            4688999987 9999999999988999 8999998887765443    223221 2  23332 2333333333222  3


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        89 ~id~vi~~ag~   99 (259)
T PRK08213         89 HVDILVNNAGA   99 (259)
T ss_pred             CCCEEEECCCC
Confidence            78999998874

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.35  E-value=0.14  Score=44.42  Aligned_cols=79  Identities=20%  Similarity=0.275  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |.+|..++..+...|+ +|+.+++++++.+.+    ++.+... .+  |..+ ...+.+.+.+..  .+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN-EDAVNAGIDKVAERFG   83 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            4689999987 9999999999999999 888888888655433    3334332 22  3322 122223333221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        84 ~~d~vi~~ag~   94 (262)
T PRK13394         84 SVDILVSNAGI   94 (262)
T ss_pred             CCCEEEECCcc
Confidence            68999998875

>PRK06482 short chain dehydrogenase; Provisional

Probab=95.35  E-value=0.14  Score=44.95  Aligned_cols=77  Identities=26%  Similarity=0.313  Sum_probs=51.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-CCce-E--eCCCCCCchHHHHHHHHh--cCCccEE
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVTE-F--LNPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      +++||+|+ |.+|..+++.+...|. +|+++.+++++.+.+++. +... +  .|..+ ...+.+.+.+..  .+++|++
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v   80 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD-SAAVRAVVDRAFAALGRIDVV   80 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            57899987 9999999998888898 899998988877665442 2211 1  23332 122333333322  2478999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      |.+.|.
T Consensus        81 i~~ag~   86 (276)
T PRK06482         81 VSNAGY   86 (276)
T ss_pred             EECCCC
Confidence            998874

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.34  E-value=0.05  Score=48.58  Aligned_cols=90  Identities=19%  Similarity=0.197  Sum_probs=61.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-CCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      ..+|.|+|.|.+|.-+..+|.-+|+ .|..++.+.+|++.++.+ +.....-+.. ..++.+.++     .+|+++..+=
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st-~~~iee~v~-----~aDlvIgaVL  240 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYST-PSNIEEAVK-----KADLVIGAVL  240 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcC-HHHHHHHhh-----hccEEEEEEE
Confidence            3457788999999999999999999 999999999999988764 4432222211 133433333     3677776431


Q ss_pred             --C----hHHHHHHHHhhccCccc
Q 022819          273 --D----TGMITTALQSCCDVRSI  290 (291)
Q Consensus       273 --~----~~~~~~~~~~l~~~G~i  290 (291)
                        +    ....++.++.|++|+.|
T Consensus       241 IpgakaPkLvt~e~vk~MkpGsVi  264 (371)
T COG0686         241 IPGAKAPKLVTREMVKQMKPGSVI  264 (371)
T ss_pred             ecCCCCceehhHHHHHhcCCCcEE
Confidence              1    23466778888888654

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.33  E-value=0.14  Score=45.29  Aligned_cols=79  Identities=25%  Similarity=0.293  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+.+++++++++.+    +..+... .+  |..+ ..++.+.+.+..  .+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH-REEVTHLADEAFRLLG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence            4678999987 8999999999999999 888888887665533    2234322 22  3322 123333333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        83 ~id~li~nAg~   93 (275)
T PRK05876         83 HVDVVFSNAGI   93 (275)
T ss_pred             CCCEEEECCCc
Confidence            78999998874

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.29  E-value=0.14  Score=44.21  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=29.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      +.+|+|+|+|++|..++..+-..|..+++.+|.+
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4679999999999999999999999899888754

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07832 short chain dehydrogenase; Provisional

Probab=95.29  E-value=0.15  Score=44.74  Aligned_cols=76  Identities=22%  Similarity=0.316  Sum_probs=48.9

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce----EeCCCCCCchHHHHHHHHh--cCCc
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE----FLNPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~----~i~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      +++|+|+ |++|..+++.+...|+ +|+.+++++++.+.+    +..+...    ..|..+ .......+.+..  .+++
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD-YDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC-HHHHHHHHHHHHHhcCCC
Confidence            6889987 9999999999989998 888888887665433    2233322    234432 122222233322  2378


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus        80 d~lv~~ag~   88 (272)
T PRK07832         80 DVVMNIAGI   88 (272)
T ss_pred             CEEEECCCC
Confidence            999999874

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.28  E-value=0.24  Score=42.63  Aligned_cols=36  Identities=33%  Similarity=0.492  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCC--eEEEEcCC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGAS--RIIGVDTN  227 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~--~vi~~~~~  227 (291)
                      -++.+++|+|+|..|..++..+...|+.  +++.++++
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            4567999999999999999999999997  89999887

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05717 oxidoreductase; Validated

Probab=95.28  E-value=0.18  Score=43.59  Aligned_cols=79  Identities=23%  Similarity=0.322  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHhc--CCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRITD--GGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~~--g~~d  265 (291)
                      ++++++|+|+ |.+|..++..+...|+ +|+.++++.++.+.+ ++++... .  .|..+ ..+..+.+.+...  +.+|
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id   86 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD-EAQVAAGVAEVLGQFGRLD   86 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence            4688999987 9999999999988998 888888776654433 4444322 2  23322 1233333333322  3689


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        87 ~li~~ag~   94 (255)
T PRK05717         87 ALVCNAAI   94 (255)
T ss_pred             EEEECCCc
Confidence            99998875

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.28  E-value=0.16  Score=43.22  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      +..+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            44679999999999999999999999889998876

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.26  E-value=0.14  Score=46.86  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ...+|+|+|+|++|..++..+...|..++..+|.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            34679999999999999999999999899999875

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.23  E-value=0.11  Score=45.13  Aligned_cols=79  Identities=19%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCC---hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc--eE--eCCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGLG---TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EF--LNPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~g---~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~--~~--i~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      ++++++|.|++   ++|.++++.+...|+ +|+.+.++++..+.++++...  ..  .|..+ .++..+.+.+..  .+.
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~   83 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS-DESIERAFATIKERVGK   83 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC-HHHHHHHHHHHHHHhCC
Confidence            57889999864   899999999988999 888888775434444444221  12  23332 233333333322  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        84 iD~lv~nAg~   93 (252)
T PRK06079         84 IDGIVHAIAY   93 (252)
T ss_pred             CCEEEEcccc
Confidence            9999998874

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.11  Score=44.88  Aligned_cols=75  Identities=23%  Similarity=0.354  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-eE--eCCCCCCchHHHHHHHHh--cCCccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EF--LNPNDNNEPVQQVIKRIT--DGGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~~--i~~~~~~~~~~~~~~~~~--~g~~d~  266 (291)
                      +++++||.|+ |++|..+++.+...|+ +|+.+++++++    +..+.. ..  .|..+ ..+..+.+.+..  .+.+|+
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~----~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~   78 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE----TVDGRPAEFHAADVRD-PDQVAALVDAIVERHGRLDV   78 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh----hhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            4788999987 8999999999988999 89999887655    112221 12  23322 123333333322  247899


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++.+.|.
T Consensus        79 vi~~ag~   85 (252)
T PRK07856         79 LVNNAGG   85 (252)
T ss_pred             EEECCCC
Confidence            9998874

>PRK06181 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.16  Score=44.17  Aligned_cols=77  Identities=21%  Similarity=0.314  Sum_probs=49.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHhc--CCc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRITD--GGA  264 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~~--g~~  264 (291)
                      .++||.|+ |.+|..+++.+...|+ +|+.+++++++.+.+    +..+... ++  |..+ ...+...+.+...  +++
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD-AEACERLIEAAVARFGGI   79 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            57899987 9999999999999998 899999887665433    2233322 22  3222 1333333333321  378


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus        80 d~vi~~ag~   88 (263)
T PRK06181         80 DILVNNAGI   88 (263)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.20  E-value=0.15  Score=44.38  Aligned_cols=73  Identities=21%  Similarity=0.336  Sum_probs=46.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hhHHHHHHcCCceE--eCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCEKAKAFGVTEF--LNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~~~a~~~g~~~~--i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      .+++++|.|+ |++|..+++.+...|+ +|+++++++ ++.+... .+....  .|..+  .+   .+.+. -+.+|+++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~--~~---~~~~~-~~~iDilV   84 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESND-ESPNEWIKWECGK--EE---SLDKQ-LASLDVLI   84 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhc-cCCCeEEEeeCCC--HH---HHHHh-cCCCCEEE
Confidence            3578999987 8999999999999999 888888765 2222211 111122  23322  21   22222 24699999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      ++.|.
T Consensus        85 nnAG~   89 (245)
T PRK12367         85 LNHGI   89 (245)
T ss_pred             ECCcc
Confidence            99875

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.20  E-value=0.15  Score=45.95  Aligned_cols=78  Identities=24%  Similarity=0.298  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC---Cc-eE--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG---VT-EF--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g---~~-~~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|+|+ |++|..+++.+...|+ +|+.++++.++.+.+ +++.   .. ..  .|..+ ..+..+.+.++.  .+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~   82 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD-LDSVRRFVDDFRALGK   82 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC-HHHHHHHHHHHHHhCC
Confidence            4678999987 9999999998888998 899998888775543 3332   11 12  23322 122333333321  23


Q ss_pred             CccEEEEccC
Q 022819          263 GADYSFECIG  272 (291)
Q Consensus       263 ~~d~vld~~g  272 (291)
                      .+|+++.+.|
T Consensus        83 ~iD~li~nAg   92 (322)
T PRK07453         83 PLDALVCNAA   92 (322)
T ss_pred             CccEEEECCc
Confidence            6999999887

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.18  E-value=0.13  Score=47.75  Aligned_cols=72  Identities=28%  Similarity=0.531  Sum_probs=45.9

Q ss_pred             EEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH--cCC--ce-EeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          197 VVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA--FGV--TE-FLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~--~g~--~~-~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      |+|+|+|.+|..+++.+....- .+|++.+++.++.+.+.+  .+.  .. .+|..+  .   +.+.++.. +.|+|++|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~--~---~~l~~~~~-~~dvVin~   74 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND--P---ESLAELLR-GCDVVINC   74 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT--H---HHHHHHHT-TSSEEEE-
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC--H---HHHHHHHh-cCCEEEEC
Confidence            6788889999999999887764 379999999999776653  222  11 233322  2   22444433 46999999


Q ss_pred             cCCh
Q 022819          271 IGDT  274 (291)
Q Consensus       271 ~g~~  274 (291)
                      +|..
T Consensus        75 ~gp~   78 (386)
T PF03435_consen   75 AGPF   78 (386)
T ss_dssp             SSGG
T ss_pred             Cccc
Confidence            9975

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.18  Score=43.56  Aligned_cols=78  Identities=19%  Similarity=0.283  Sum_probs=50.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC--ceE--eCCCCCCchHHHHHHHHhc--CCcc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV--TEF--LNPNDNNEPVQQVIKRITD--GGAD  265 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~--~~~--i~~~~~~~~~~~~~~~~~~--g~~d  265 (291)
                      ++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+ +++..  ...  .|..+ ..++...+.+...  +++|
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d   79 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD-AASLAAALANAAAERGPVD   79 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            468999987 8999999988888898 899998887766543 33321  112  23322 1223333333221  3689


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        80 ~vi~~ag~   87 (257)
T PRK07074         80 VLVANAGA   87 (257)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.16  Score=43.76  Aligned_cols=79  Identities=19%  Similarity=0.318  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc-eEe--CCCCCCchHHHHHHHHhc--C
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFL--NPNDNNEPVQQVIKRITD--G  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~-~~i--~~~~~~~~~~~~~~~~~~--g  262 (291)
                      ++++++|.|+ |.+|..+++.+...|+ +|+.++++.++.+.+.+    .+.. ..+  |..+ ..+....+.+...  +
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE-MEQIDALFAHIRERHG   84 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            3578999987 8999999999999999 99999988776544322    2322 122  3322 1223333333221  3


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        85 ~id~li~~ag~   95 (252)
T PRK07035         85 RLDILVNNAAA   95 (252)
T ss_pred             CCCEEEECCCc
Confidence            68999998873

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.2  Score=43.08  Aligned_cols=75  Identities=13%  Similarity=0.168  Sum_probs=48.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-eE--eCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EF--LNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~~--i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      .+++|.|+ |++|...+..+...|+ +|+.+++++++.+.+.+.+.. ..  .|..+ .++..+.+++. ....|.++.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~-~~~~d~~i~~   78 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQSANIFTLAFDVTD-HPGTKAALSQL-PFIPELWIFN   78 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCCCeEEEeeCCC-HHHHHHHHHhc-ccCCCEEEEc
Confidence            56889987 9999998888888999 899999988887766543321 12  23332 23333333332 2245776666


Q ss_pred             cC
Q 022819          271 IG  272 (291)
Q Consensus       271 ~g  272 (291)
                      .|
T Consensus        79 ag   80 (240)
T PRK06101         79 AG   80 (240)
T ss_pred             Cc
Confidence            65

>PRK01581 speE spermidine synthase; Validated

Probab=95.16  E-value=0.27  Score=45.23  Aligned_cols=94  Identities=13%  Similarity=0.095  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC-----------ceE-eCCCCCCchHHHHHHH
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-----------TEF-LNPNDNNEPVQQVIKR  258 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~-----------~~~-i~~~~~~~~~~~~~~~  258 (291)
                      ....++|||+|+| .|.++..+++..+.++|++++.+++-.+.++++..           +.+ +..    .+..+.+.+
T Consensus       148 h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi----~Da~~fL~~  222 (374)
T PRK01581        148 VIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV----CDAKEFLSS  222 (374)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE----CcHHHHHHh
Confidence            3556799999875 56667777776666699999999999999986310           111 101    233444543


Q ss_pred             HhcCCccEEEEccCC-----------hHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIGD-----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g~-----------~~~~~~~~~~l~~~G~i  290 (291)
                       ..+.+|+||--...           .+.++.+.+.|+++|.+
T Consensus       223 -~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~  264 (374)
T PRK01581        223 -PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAF  264 (374)
T ss_pred             -cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEE
Confidence             23479976654322           34678889999999975

>PRK08264 short chain dehydrogenase; Validated

Probab=95.15  E-value=0.11  Score=44.32  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-Ee--CCCCCCchHHHHHHHHhcCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FL--NPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      .+++++|+|+ |.+|..+++.+...|.++|+.++++.++.+.   .+... ++  |..+ .+++.+.+...  +.+|+++
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~-~~~~~~~~~~~--~~id~vi   78 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD-PASVAAAAEAA--SDVTILV   78 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC-HHHHHHHHHhc--CCCCEEE
Confidence            4578999986 9999999999999998678888887766543   22221 22  3322 12222222221  3689999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        79 ~~ag~   83 (238)
T PRK08264         79 NNAGI   83 (238)
T ss_pred             ECCCc
Confidence            98876

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.14  E-value=0.34  Score=39.31  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=36.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +|-++|.|.+|...+.-+...|. .|.+.++++++.+.+.+.|+
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~   45 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGA   45 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTE
T ss_pred             EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhh
Confidence            67889999999999999999999 99999999999888877663

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.18  Score=43.85  Aligned_cols=79  Identities=28%  Similarity=0.359  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc---CCce-Ee--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF---GVTE-FL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~---g~~~-~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      ++++++|+|+ |.+|..++..+...|+ +|+.++++++..+.++++   +... .+  |..+ ..+....+.+..  .+.
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~~   82 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD-PASVAAAIKRAKEKEGR   82 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence            4688999987 9999999999999999 899998877544433332   3221 22  3322 122333333322  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        83 id~vi~~ag~   92 (263)
T PRK08226         83 IDILVNNAGV   92 (263)
T ss_pred             CCEEEECCCc
Confidence            8999998884

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.12  E-value=0.16  Score=50.50  Aligned_cols=78  Identities=21%  Similarity=0.380  Sum_probs=58.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      .+.|+|.|.|.+|+.+++.++..|. .++++|.++++.+.+++.|...++ -+   ..-.+.+++..-..+|.++-+++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~-GD---at~~~~L~~agi~~A~~vvv~~~d  474 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFY-GD---ATRMDLLESAGAAKAEVLINAIDD  474 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEE-Ee---CCCHHHHHhcCCCcCCEEEEEeCC
Confidence            3679999999999999999999999 899999999999999998865433 11   112234444433378999988887


Q ss_pred             hHH
Q 022819          274 TGM  276 (291)
Q Consensus       274 ~~~  276 (291)
                      .+.
T Consensus       475 ~~~  477 (621)
T PRK03562        475 PQT  477 (621)
T ss_pred             HHH
Confidence            443

>PRK08251 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.18  Score=43.28  Aligned_cols=78  Identities=24%  Similarity=0.343  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----c--CCce-E--eCCCCCCchHHHHHHHHh--c
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----F--GVTE-F--LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~--g~~~-~--i~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++|.|+ |++|..++..+...|+ +|+.+++++++.+.+..    .  +... +  .|..+ ..++.+.+.+..  .
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   79 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND-HDQVFEVFAEFRDEL   79 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            468999987 9999999988888898 89998888877654422    1  2211 2  23332 233333344332  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        80 ~~id~vi~~ag~   91 (248)
T PRK08251         80 GGLDRVIVNAGI   91 (248)
T ss_pred             CCCCEEEECCCc
Confidence            478999998873

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.10  E-value=0.19  Score=43.50  Aligned_cols=79  Identities=22%  Similarity=0.388  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      .++++||.|+ |.+|...++.+...|+ +|+.++++.++.+.+. +++... .+  |..+ ..+....+.+..  .+.+|
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR-QDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            3578999987 9999999999999999 8999998887765543 333221 22  3222 233333333322  24789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        83 ~li~~ag~   90 (257)
T PRK07067         83 ILFNNAAL   90 (257)
T ss_pred             EEEECCCc
Confidence            99998774

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=95.10  E-value=0.22  Score=43.11  Aligned_cols=78  Identities=21%  Similarity=0.293  Sum_probs=49.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H----cCC--ceEe--CCCCCCchHHHHHHHHh--c
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A----FGV--TEFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~----~g~--~~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      ++++||.|+ |.+|..++..+...|+ +|+.++++.++.+.+. +    .+.  ...+  |..+ ..+....+.+..  .
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~   79 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS-EQSVLALSRGVDEIF   79 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            468999987 8999999999988999 8999988876554332 2    221  1122  3322 122333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus        80 ~~id~vv~~ag~   91 (259)
T PRK12384         80 GRVDLLVYNAGI   91 (259)
T ss_pred             CCCCEEEECCCc
Confidence            478999998874

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.08  E-value=0.21  Score=43.84  Aligned_cols=77  Identities=19%  Similarity=0.322  Sum_probs=50.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCC--c-eE--eCCCCCCchHHHHHHHHhc--
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGV--T-EF--LNPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~--~-~~--i~~~~~~~~~~~~~~~~~~--  261 (291)
                      ++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+    .+.  . .+  .|..+ ..++.. +.+...  
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~-~~~~~~~~   79 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD-QNSIHN-FQLVLKEI   79 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC-HHHHHH-HHHHHHhc
Confidence            568899987 9999999998888999 89999888776544322    221  1 12  23332 223333 443322  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus        80 ~~id~vv~~ag~   91 (280)
T PRK06914         80 GRIDLLVNNAGY   91 (280)
T ss_pred             CCeeEEEECCcc
Confidence            478999998874

>PRK09186 flagellin modification protein A; Provisional

Probab=95.08  E-value=0.2  Score=43.22  Aligned_cols=78  Identities=22%  Similarity=0.425  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHc----CCce----EeCCCCCCchHHHHHHHHhc-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----GVTE----FLNPNDNNEPVQQVIKRITD-  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~----g~~~----~i~~~~~~~~~~~~~~~~~~-  261 (291)
                      +++++||.|+ |.+|...+..+...|+ +|+.+.+++++.+.+ +++    +...    ..|..+ ..++.+.+.+... 
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~   80 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD-QESLEEFLSKSAEK   80 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC-HHHHHHHHHHHHHH
Confidence            4688999987 8999999999999999 899998887765543 222    2211    223332 2333333443221 


Q ss_pred             -CCccEEEEccC
Q 022819          262 -GGADYSFECIG  272 (291)
Q Consensus       262 -g~~d~vld~~g  272 (291)
                       +++|+++.+.+
T Consensus        81 ~~~id~vi~~A~   92 (256)
T PRK09186         81 YGKIDGAVNCAY   92 (256)
T ss_pred             cCCccEEEECCc
Confidence             46899999875

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.07  E-value=0.23  Score=44.38  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      ++++++|+|+|++|++++..+...|+++|+.+.++.
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            568899999999999999888899996698888875

>PLN02253 xanthoxin dehydrogenase

Probab=95.07  E-value=0.16  Score=44.63  Aligned_cols=79  Identities=18%  Similarity=0.220  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC--c-eE--eCCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV--T-EF--LNPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~--~-~~--i~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      .++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++.  . ..  .|..+ .+...+.+.+..  .++
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~g~   94 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV-EDDVSRAVDFTVDKFGT   94 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence            4678999987 8999999998888899 899998876654433 33321  1 12  23332 122333333221  147


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        95 id~li~~Ag~  104 (280)
T PLN02253         95 LDIMVNNAGL  104 (280)
T ss_pred             CCEEEECCCc
Confidence            9999998874

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.18  Score=45.10  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHc-----CCce-Ee--CCCCCCchHHHHHHHHhc-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF-----GVTE-FL--NPNDNNEPVQQVIKRITD-  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~-----g~~~-~i--~~~~~~~~~~~~~~~~~~-  261 (291)
                      .++++||.|+ |++|..+++.+...|+ +|+.+.++.++.+.+ +++     +... .+  |..+ ..+..+.+.++.. 
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~   92 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS-LASVRAAADALRAA   92 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHhh
Confidence            5688999987 9999999998888899 888888887765432 121     1111 22  3322 1333333443322 


Q ss_pred             -CCccEEEEccCC
Q 022819          262 -GGADYSFECIGD  273 (291)
Q Consensus       262 -g~~d~vld~~g~  273 (291)
                       +.+|+++.+.|.
T Consensus        93 ~~~iD~li~nAg~  105 (306)
T PRK06197         93 YPRIDLLINNAGV  105 (306)
T ss_pred             CCCCCEEEECCcc
Confidence             378999998874

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.06  E-value=0.19  Score=43.18  Aligned_cols=73  Identities=22%  Similarity=0.371  Sum_probs=54.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH--HcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK--AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~--~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +++|+|+|.+|...++.+...|. .|+.++.++++.+...  ++....+. -+   ..-.+.++++.-..+|+++-++|.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v~-gd---~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVVI-GD---ATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceEEEE-ec---CCCHHHHHhcCCCcCCEEEEeeCC
Confidence            57889999999999999999998 9999999999877733  35443332 22   222345666533489999998887

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.04  E-value=0.19  Score=44.19  Aligned_cols=79  Identities=29%  Similarity=0.383  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HH---cCCce-E--eCCCCCCchHHHHHHHHhc--C
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA---FGVTE-F--LNPNDNNEPVQQVIKRITD--G  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~---~g~~~-~--i~~~~~~~~~~~~~~~~~~--g  262 (291)
                      ++++++|.|+ |++|++++..+...|+ +|+.+++++++.+.+ ++   .+... .  .|..+ ..+....+.+...  +
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g   86 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD-KESLEQARQQILEDFG   86 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            4688999987 8999999999999999 899998887655433 22   23221 2  23322 1233333333222  4


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        87 ~id~li~~ag~   97 (278)
T PRK08277         87 PCDILINGAGG   97 (278)
T ss_pred             CCCEEEECCCC
Confidence            78999998873

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.19  Score=43.59  Aligned_cols=79  Identities=16%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-hHH-H---HHHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCE-K---AKAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~-~~~-~---a~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|..+++.+...|+ +|+.++++++ ..+ .   ++..+... .+  |..+ +++..+.+.+..  .
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~   84 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS-KADLRAAVARTEAEL   84 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            4678999987 8999999999999999 8888877643 222 2   22334322 22  3322 233333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus        85 g~id~li~~ag~   96 (254)
T PRK06114         85 GALTLAVNAAGI   96 (254)
T ss_pred             CCCCEEEECCCC
Confidence            478999999884

>PLN00203 glutamyl-tRNA reductase

Probab=95.03  E-value=0.14  Score=49.48  Aligned_cols=73  Identities=16%  Similarity=0.343  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC-Cce-EeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFG-VTE-FLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g-~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      .+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+. +++ ... ++..    .+..+.+     ..+|+||.
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~----~dl~~al-----~~aDVVIs  335 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPL----DEMLACA-----AEADVVFT  335 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH----hhHHHHH-----hcCCEEEE
Confidence            3688999999999999999999999878999999988866554 453 211 1121    1221222     26899999


Q ss_pred             ccCCh
Q 022819          270 CIGDT  274 (291)
Q Consensus       270 ~~g~~  274 (291)
                      +++.+
T Consensus       336 AT~s~  340 (519)
T PLN00203        336 STSSE  340 (519)
T ss_pred             ccCCC
Confidence            98763

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.02  E-value=0.18  Score=43.16  Aligned_cols=79  Identities=20%  Similarity=0.269  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHhc--C
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRITD--G  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~~--g  262 (291)
                      .++++||+|+ |.+|...+..+...|. +|++++++.++...+    ++.+... .+  |..+ ..++...+.+...  +
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRD-RAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            4578999987 9999999998888898 899998886554332    2233222 22  3322 1233333333221  3


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.+.
T Consensus        83 ~~d~vi~~ag~   93 (251)
T PRK12826         83 RLDILVANAGI   93 (251)
T ss_pred             CCCEEEECCCC
Confidence            68999998865

>PLN02244 tocopherol O-methyltransferase

Probab=95.02  E-value=0.048  Score=49.96  Aligned_cols=90  Identities=20%  Similarity=0.306  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce---EeCCCCCCchHHHHHHHHhcCCc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE---FLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~---~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      +++++||-+|+| .|..+..+++..|+ +|++++.+++..+.+++.    +...   ++..+.  .+.     .+.++.|
T Consensus       117 ~~~~~VLDiGCG-~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~--~~~-----~~~~~~F  187 (340)
T PLN02244        117 KRPKRIVDVGCG-IGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA--LNQ-----PFEDGQF  187 (340)
T ss_pred             CCCCeEEEecCC-CCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc--ccC-----CCCCCCc
Confidence            678899999986 46677788887788 999999999887776553    3211   221111  110     1223478


Q ss_pred             cEEEEccCC------hHHHHHHHHhhccCccc
Q 022819          265 DYSFECIGD------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld~~g~------~~~~~~~~~~l~~~G~i  290 (291)
                      |+|+-.-..      ...+.++.+.|++||+|
T Consensus       188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~l  219 (340)
T PLN02244        188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRI  219 (340)
T ss_pred             cEEEECCchhccCCHHHHHHHHHHHcCCCcEE
Confidence            988853221      35678899999999986

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.02  E-value=0.18  Score=49.38  Aligned_cols=74  Identities=15%  Similarity=0.298  Sum_probs=55.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +.++|.|.|.+|+..++.++..|. .++++|.++++.+.+++.|...+.-..    .-.+.+++..-..+|.++-+++.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~----~~~~~L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNA----ANEEIMQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCC----CCHHHHHhcCccccCEEEEEcCC
Confidence            678999999999999999999998 899999999999999988866544221    11233444322378877777665

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.02  E-value=0.19  Score=43.84  Aligned_cols=79  Identities=16%  Similarity=0.294  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEe--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+   +++|++.++.+...|+ +|+.+.+.+...+.+++    .+....+  |..+ .++..+.+.+..  .
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   82 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVAS-DDEINQVFADLGKHW   82 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCC-HHHHHHHHHHHHHHh
Confidence            5678999983   5899999999989999 88877655432233322    2332222  3332 233333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        83 g~iD~lVnnAG~   94 (261)
T PRK08690         83 DGLDGLVHSIGF   94 (261)
T ss_pred             CCCcEEEECCcc
Confidence            479999999875

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.00  E-value=0.16  Score=44.26  Aligned_cols=35  Identities=31%  Similarity=0.477  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ...+|+|+|+|++|..++..+...|..++..+|.+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999999888888653

>PRK09242 tropinone reductase; Provisional

Probab=95.00  E-value=0.2  Score=43.35  Aligned_cols=79  Identities=20%  Similarity=0.304  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc-----CCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF-----GVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~-----g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      ++++++|.|+ |++|..++..+...|+ +|+.++++.++.+.+. ++     +... .+  |..+ ..+....+.+..  
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   85 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD-DEDRRAILDWVEDH   85 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHHHH
Confidence            4788999987 8999999999999999 8999988887655442 21     2222 22  3322 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus        86 ~g~id~li~~ag~   98 (257)
T PRK09242         86 WDGLHILVNNAGG   98 (257)
T ss_pred             cCCCCEEEECCCC
Confidence            2479999999885

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.00  E-value=0.19  Score=42.91  Aligned_cols=80  Identities=21%  Similarity=0.327  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-EeCCCCC-CchHHHHHHHHhc--CC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FLNPNDN-NEPVQQVIKRITD--GG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i~~~~~-~~~~~~~~~~~~~--g~  263 (291)
                      .+.+++|.|+ |.+|..++..+...|+ +|+.+++++++.+.+    +..+... .+..+.. ..++.+.+++...  ++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            3578999987 8999999998888999 899999887665433    2223222 2222211 1233333333221  37


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|++|.+.|.
T Consensus        85 id~vi~~ag~   94 (239)
T PRK07666         85 IDILINNAGI   94 (239)
T ss_pred             ccEEEEcCcc
Confidence            8999998874

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.00  E-value=0.23  Score=43.08  Aligned_cols=76  Identities=25%  Similarity=0.365  Sum_probs=49.6

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H---cCCceEe--CCCCCCchHHHHHHHHh--cCCccE
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---FGVTEFL--NPNDNNEPVQQVIKRIT--DGGADY  266 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~---~g~~~~i--~~~~~~~~~~~~~~~~~--~g~~d~  266 (291)
                      ++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+. +   .+....+  |..+ .++..+.+.+..  .+++|+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~~~~~~~~~~~~~g~id~   79 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSD-KDDLKNLVKEAWELLGGIDA   79 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC-HHHHHHHHHHHHHhcCCCCE
Confidence            5889987 8999999999988999 8999988887654432 2   2322222  3322 133333333322  247899


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++.+.|.
T Consensus        80 li~naG~   86 (259)
T PRK08340         80 LVWNAGN   86 (259)
T ss_pred             EEECCCC
Confidence            9998874

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.00  E-value=0.23  Score=42.88  Aligned_cols=79  Identities=24%  Similarity=0.377  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|.|+ |.+|..++..+...|+ +|+.+++++++.+.+    ++.+... .  .|..+ +.++...+.+..  .+
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   87 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD-EEAVAAAFARIDAEHG   87 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence            5789999987 8999999988888899 899999887765433    2334222 2  23332 233333333332  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        88 ~id~vi~~ag~   98 (256)
T PRK06124         88 RLDILVNNVGA   98 (256)
T ss_pred             CCCEEEECCCC
Confidence            78999998885

>PRK06849 hypothetical protein; Provisional

Probab=95.00  E-value=0.21  Score=46.48  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=59.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE--eC-CCCCCchHHHHHHHHhcC-CccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF--LN-PNDNNEPVQQVIKRITDG-GADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~--i~-~~~~~~~~~~~~~~~~~g-~~d~v  267 (291)
                      ...+|||+|+ .+.++..++.++..|. +|++++.++.......+ .++..  +. .+.+.+.+.+.+.++... ++|++
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s~-~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v   80 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFSR-AVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL   80 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHH-hhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            4588999998 5799999999999999 99999887654432222 12222  21 222235577777777666 89999


Q ss_pred             EEccCChHHHHHHHHhhcc
Q 022819          268 FECIGDTGMITTALQSCCD  286 (291)
Q Consensus       268 ld~~g~~~~~~~~~~~l~~  286 (291)
                      +-+......+....+.+..
T Consensus        81 IP~~e~~~~~a~~~~~l~~   99 (389)
T PRK06849         81 IPTCEEVFYLSHAKEELSA   99 (389)
T ss_pred             EECChHHHhHHhhhhhhcC
Confidence            9776543223333344433

>PRK05875 short chain dehydrogenase; Provisional

Probab=94.98  E-value=0.29  Score=42.84  Aligned_cols=79  Identities=25%  Similarity=0.397  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHc---C--Cc-eEe--CCCCCCchHHHHHHHHhc-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---G--VT-EFL--NPNDNNEPVQQVIKRITD-  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~---g--~~-~~i--~~~~~~~~~~~~~~~~~~-  261 (291)
                      +++++||.|+ |.+|..+++.+...|+ +|+.+.++.++.+.. +++   +  .. .++  |..+ ..+....+.+... 
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   83 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD-EDQVARAVDAATAW   83 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            3678999987 9999999999999999 899998887664432 222   1  11 122  3322 1233333333221 


Q ss_pred             -CCccEEEEccCC
Q 022819          262 -GGADYSFECIGD  273 (291)
Q Consensus       262 -g~~d~vld~~g~  273 (291)
                       +++|+++.+.|.
T Consensus        84 ~~~~d~li~~ag~   96 (276)
T PRK05875         84 HGRLHGVVHCAGG   96 (276)
T ss_pred             cCCCCEEEECCCc
Confidence             378999998873

>PRK04266 fibrillarin; Provisional

Probab=94.97  E-value=0.3  Score=42.02  Aligned_cols=99  Identities=14%  Similarity=0.096  Sum_probs=58.5

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhcC
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      +...++++++||=+|+| .|..+..+++..+..+|++++.+++.++.+.+.    .--..+.-+.  .+. .....+ ..
T Consensus        66 ~~l~i~~g~~VlD~G~G-~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~--~~~-~~~~~l-~~  140 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAA-SGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA--RKP-ERYAHV-VE  140 (226)
T ss_pred             hhCCCCCCCEEEEEccC-CCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC--CCc-chhhhc-cc
Confidence            44678999999999875 344555666665433899999999876644322    1111221111  110 000011 12


Q ss_pred             CccEEEEccCCh----HHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGDT----GMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~~----~~~~~~~~~l~~~G~i  290 (291)
                      .+|+++-....+    ..++.+.+.|++||++
T Consensus       141 ~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~l  172 (226)
T PRK04266        141 KVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYL  172 (226)
T ss_pred             cCCEEEECCCChhHHHHHHHHHHHhcCCCcEE
Confidence            599998544432    2367888899999986

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.96  E-value=0.3  Score=43.12  Aligned_cols=79  Identities=18%  Similarity=0.301  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChh---hHHHH-HHcCCceE--eCCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKA-KAFGVTEF--LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~~---~~~~a-~~~g~~~~--i~~~~~~~~~~~~~~~~~--~  261 (291)
                      .++++||.|+   +++|+++++.+...|+ +|+.++++++   +.+.+ ++++....  .|..+ .+.....+.+..  .
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~i~~~~   81 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK-PEHFKSLAESLKKDL   81 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC-HHHHHHHHHHHHHHc
Confidence            4688999986   4899999999988999 8888887742   33322 34453322  34432 233333333332  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++++.|.
T Consensus        82 g~iDilVnnAG~   93 (274)
T PRK08415         82 GKIDFIVHSVAF   93 (274)
T ss_pred             CCCCEEEECCcc
Confidence            479999999884

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.94  E-value=0.22  Score=43.49  Aligned_cols=79  Identities=18%  Similarity=0.304  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceE--eCCCCCCchHHHHHHHHhc--
Q 022819          193 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF--LNPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       193 ~~~~vlV~G~-g--~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~--i~~~~~~~~~~~~~~~~~~--  261 (291)
                      +++++||.|+ +  ++|.++++.+...|+ +|+..+++++..+.+    ++.|....  .|..+ ..+..+.+++...  
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~-~~~v~~~~~~~~~~~   84 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN-PKSISNLFDDIKEKW   84 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC-HHHHHHHHHHHHHHc
Confidence            5688999987 3  799999988888899 888877764222222    23343332  24332 2333333333322  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++++.|.
T Consensus        85 g~iDilVnnag~   96 (260)
T PRK06603         85 GSFDFLLHGMAF   96 (260)
T ss_pred             CCccEEEEcccc
Confidence            479999998774

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=94.92  E-value=0.45  Score=36.01  Aligned_cols=82  Identities=16%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHc--CCCeEE-EEcCChhhHHH-HHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          196 TVVIFGLGTVGLSVAQGAKAR--GASRII-GVDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~--g~~~vi-~~~~~~~~~~~-a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++.|+|.|.+|......++..  +. .++ ++++++++.+. ++++|.. .+      .++.+.+..   ..+|+|+-++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~-~~------~~~~~ll~~---~~~D~V~I~t   70 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIP-VY------TDLEELLAD---EDVDAVIIAT   70 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSE-EE------SSHHHHHHH---TTESEEEEES
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhccc-ch------hHHHHHHHh---hcCCEEEEec
Confidence            578899999999888666655  45 444 55777776665 4567776 33      223333332   2689999999


Q ss_pred             CChHHHHHHHHhhccCc
Q 022819          272 GDTGMITTALQSCCDVR  288 (291)
Q Consensus       272 g~~~~~~~~~~~l~~~G  288 (291)
                      ......+.+..+++.|-
T Consensus        71 p~~~h~~~~~~~l~~g~   87 (120)
T PF01408_consen   71 PPSSHAEIAKKALEAGK   87 (120)
T ss_dssp             SGGGHHHHHHHHHHTTS
T ss_pred             CCcchHHHHHHHHHcCC
Confidence            98888888888887663

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=94.91  E-value=0.18  Score=43.41  Aligned_cols=79  Identities=27%  Similarity=0.360  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H---cCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---FGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~---~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |.+|...++.+...|. +|+.+++++++.+.+. +   .+... .  .|..+ ..+..+.+.+..  .+
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD-EEAINAGIDYAVETFG   80 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            3578999987 9999999998888898 8999988887655432 2   23222 2  23332 233333333322  23


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.+.
T Consensus        81 ~~d~vi~~a~~   91 (258)
T PRK12429         81 GVDILVNNAGI   91 (258)
T ss_pred             CCCEEEECCCC
Confidence            78999998874

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=94.90  E-value=0.31  Score=41.77  Aligned_cols=80  Identities=23%  Similarity=0.270  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-EeCCCCC-CchHHHHHHHHhc--CC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FLNPNDN-NEPVQQVIKRITD--GG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i~~~~~-~~~~~~~~~~~~~--g~  263 (291)
                      +++++||.|+ |.+|..++..+...|. +|+.++++.++.+.+.    +.+... ++..+-. .....+.+.+...  ++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999999999998 8999988877655432    223222 2222211 1233333333322  37


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        81 ~d~vi~~ag~   90 (250)
T TIGR03206        81 VDVLVNNAGW   90 (250)
T ss_pred             CCEEEECCCC
Confidence            8999998873

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=94.90  E-value=0.22  Score=43.11  Aligned_cols=80  Identities=21%  Similarity=0.312  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--hHHHHHHcCCce-EeCCCCC-CchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--KCEKAKAFGVTE-FLNPNDN-NEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~--~~~~a~~~g~~~-~i~~~~~-~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++.  ..+.+++.+... .+..+-. .++....+.+..  .+.+|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4678999987 8999999999999999 8888765432  223333444322 2222211 233333333322  23789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        88 ~li~~Ag~   95 (253)
T PRK08993         88 ILVNNAGL   95 (253)
T ss_pred             EEEECCCC
Confidence            99999875

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.88  E-value=0.27  Score=42.93  Aligned_cols=90  Identities=21%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHHHHhcCCc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      .++.+||-+|+| .|..+..+++. |. +|++++.+++.++.+++.    |..   .++..     +.. .+.....+.+
T Consensus        43 ~~~~~vLDiGcG-~G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~-----d~~-~l~~~~~~~f  113 (255)
T PRK11036         43 PRPLRVLDAGGG-EGQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC-----AAQ-DIAQHLETPV  113 (255)
T ss_pred             CCCCEEEEeCCC-chHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEc-----CHH-HHhhhcCCCC
Confidence            456788888886 56677777764 77 999999999988887653    321   12211     111 1222233479


Q ss_pred             cEEEEcc-----CC-hHHHHHHHHhhccCccc
Q 022819          265 DYSFECI-----GD-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld~~-----g~-~~~~~~~~~~l~~~G~i  290 (291)
                      |+|+-..     .. ...+..+.+.|++||++
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l  145 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGAL  145 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEE
Confidence            9888432     22 35688999999999986

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.86  E-value=0.44  Score=42.11  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      .+.+|+|+|+|++|..++..+-..|..++..+|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45679999999999999999999998788888754

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.85  E-value=0.19  Score=49.63  Aligned_cols=77  Identities=13%  Similarity=0.227  Sum_probs=58.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      +.|+|.|.|.+|..+++.++..|. .++++|.++++.+.+++.|...++- +   ..-.+.+++..-..+|.++-+++..
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~G-D---at~~~~L~~agi~~A~~vv~~~~d~  475 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYG-D---ATQLELLRAAGAEKAEAIVITCNEP  475 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEe-e---CCCHHHHHhcCCccCCEEEEEeCCH
Confidence            578899999999999999999999 8999999999999999988654431 1   1222344444333789999888885


Q ss_pred             HH
Q 022819          275 GM  276 (291)
Q Consensus       275 ~~  276 (291)
                      ..
T Consensus       476 ~~  477 (601)
T PRK03659        476 ED  477 (601)
T ss_pred             HH
Confidence            43

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=94.83  E-value=0.22  Score=42.93  Aligned_cols=76  Identities=14%  Similarity=0.295  Sum_probs=50.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCce-E--eCCCCCCchHHHHHHHHhc--CCccEEE
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTE-F--LNPNDNNEPVQQVIKRITD--GGADYSF  268 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~-~--i~~~~~~~~~~~~~~~~~~--g~~d~vl  268 (291)
                      +++|.|+ |.+|...+..+...|+ +|+++++++++.+.+.. ++... .  .|..+ ..++.+.+.+...  +++|+++
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~id~vi   79 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWRNIDVLV   79 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence            5888887 9999999999999999 89999998887665533 34322 2  23322 1233333333322  3789999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        80 ~~ag~   84 (248)
T PRK10538         80 NNAGL   84 (248)
T ss_pred             ECCCc
Confidence            98774

>PRK06720 hypothetical protein; Provisional

Probab=94.80  E-value=0.42  Score=39.14  Aligned_cols=80  Identities=21%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-H---HcCCce-EeCCCCC-CchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-K---AFGVTE-FLNPNDN-NEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~---~~g~~~-~i~~~~~-~~~~~~~~~~~~--~g~  263 (291)
                      ++++++|.|+ +++|...+..+...|+ +|+.+++++++.+.+ +   +.+... .+..+-. ..++.+.+.+..  .++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5678999987 7899999998888898 899998877655332 2   234322 2222211 123333332221  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        94 iDilVnnAG~  103 (169)
T PRK06720         94 IDMLFQNAGL  103 (169)
T ss_pred             CCEEEECCCc
Confidence            9999999875

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.77  E-value=0.19  Score=45.37  Aligned_cols=71  Identities=15%  Similarity=0.225  Sum_probs=48.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i-~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|+|+|+ |.+|..++..+...|. +|+++.++.++...+...++..+. |..+  .+   .+.+... ++|+||.+++.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d--~~---~l~~al~-g~d~Vi~~~~~   74 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL--PE---TLPPSFK-GVTAIIDASTS   74 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC--HH---HHHHHHC-CCCEEEECCCC
Confidence            6899987 9999999999999998 899998887665554445554332 3222  21   2333222 58999998663

>PRK06398 aldose dehydrogenase; Validated

Probab=94.75  E-value=0.14  Score=44.66  Aligned_cols=74  Identities=20%  Similarity=0.267  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      +++++||+|+ +++|.+++..+...|+ +|+.+++++++..     .... ..|..+ ..+..+.+.+..  .+.+|+++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~~~~~~D~~~-~~~i~~~~~~~~~~~~~id~li   77 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DVDYFKVDVSN-KEQVIKGIDYVISKYGRIDILV   77 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 8999999999999999 8998887765432     1111 224332 133333333332  24789999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        78 ~~Ag~   82 (258)
T PRK06398         78 NNAGI   82 (258)
T ss_pred             ECCCC
Confidence            98874

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=94.74  E-value=0.27  Score=43.89  Aligned_cols=79  Identities=23%  Similarity=0.289  Sum_probs=56.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHH-HHHHHcCCCeEEEEcCChhhHHHHHH-----cCCce---EeCCCCCCchHHHHHHHHhc
Q 022819          192 SKGSTVVIFGL-GTVGLSVA-QGAKARGASRIIGVDTNPEKCEKAKA-----FGVTE---FLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i-~~a~~~g~~~vi~~~~~~~~~~~a~~-----~g~~~---~i~~~~~~~~~~~~~~~~~~  261 (291)
                      +-|++.+|.|+ .++|.+.+ ++|+ .|. +|+.+.|+++|++..++     .++..   .+|+...+. .-+.+++.+.
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~-~ye~i~~~l~  123 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDE-VYEKLLEKLA  123 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCch-hHHHHHHHhc
Confidence            34688999998 68998766 5555 999 89999999999886643     44321   457765333 3455565555


Q ss_pred             C-CccEEEEccCC
Q 022819          262 G-GADYSFECIGD  273 (291)
Q Consensus       262 g-~~d~vld~~g~  273 (291)
                      + .+-+.++++|-
T Consensus       124 ~~~VgILVNNvG~  136 (312)
T KOG1014|consen  124 GLDVGILVNNVGM  136 (312)
T ss_pred             CCceEEEEecccc
Confidence            5 78899999995

>PRK07102 short chain dehydrogenase; Provisional

Probab=94.74  E-value=0.35  Score=41.42  Aligned_cols=76  Identities=17%  Similarity=0.255  Sum_probs=48.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc----CCc-eEe--CCCCCCchHHHHHHHHhcCCcc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF----GVT-EFL--NPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~----g~~-~~i--~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      ++++|.|+ |++|..+++.+...|. +|+++++++++.+.+. ++    +.. .++  |..+ ..+..+.+.+. ...+|
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~-~~~~d   78 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILD-TASHAAFLDSL-PALPD   78 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC-hHHHHHHHHHH-hhcCC
Confidence            57899987 9999999999999998 8999999887654332 11    111 122  3222 12333333332 22579


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        79 ~vv~~ag~   86 (243)
T PRK07102         79 IVLIAVGT   86 (243)
T ss_pred             EEEECCcC
Confidence            99987764

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=94.74  E-value=0.31  Score=43.38  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-CCceEe--CCCC--CCchHHHHHHHHhcCCccEE-E
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVTEFL--NPND--NNEPVQQVIKRITDGGADYS-F  268 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-g~~~~i--~~~~--~~~~~~~~~~~~~~g~~d~v-l  268 (291)
                      ++|||+|.| -|-.+-.+++....+++++++-+++=.++++++ +.....  |.+-  .-.|-.+.+++... .+|+| +
T Consensus        78 k~VLiiGgG-dG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGG-DGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIV  155 (282)
T ss_pred             CeEEEECCC-ccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEE
Confidence            599999765 455566778888788999999999999999874 221111  1110  01455566666433 79954 5


Q ss_pred             EccCC---------hHHHHHHHHhhccCccc
Q 022819          269 ECIGD---------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       269 d~~g~---------~~~~~~~~~~l~~~G~i  290 (291)
                      |++..         ++.++.+.+.|+++|.+
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~  186 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIF  186 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCCcEE
Confidence            55554         67889999999999865

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.73  E-value=0.18  Score=46.80  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            55679999999999999999999999899999876

>PRK07577 short chain dehydrogenase; Provisional

Probab=94.72  E-value=0.18  Score=42.80  Aligned_cols=73  Identities=19%  Similarity=0.240  Sum_probs=48.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhcC-CccEEEEc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDG-GADYSFEC  270 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~  270 (291)
                      +++++|.|+ |.+|..+++.+...|. +|+.+.++.++.     .... ...|..+ .....+.+.+.... ++|+++.+
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-----~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~d~vi~~   75 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAIDD-----FPGELFACDLAD-IEQTAATLAQINEIHPVDAIVNN   75 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCcccc-----cCceEEEeeCCC-HHHHHHHHHHHHHhCCCcEEEEC
Confidence            578999987 9999999999999998 899998876541     1111 1223322 13333334443333 68999998


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .|.
T Consensus        76 ag~   78 (234)
T PRK07577         76 VGI   78 (234)
T ss_pred             CCC
Confidence            874

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=94.72  E-value=0.31  Score=41.94  Aligned_cols=82  Identities=23%  Similarity=0.276  Sum_probs=52.6

Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce--E--eCCCC-CCchHHHHHHHHh
Q 022819          191 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE--F--LNPND-NNEPVQQVIKRIT  260 (291)
Q Consensus       191 ~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~--~--i~~~~-~~~~~~~~~~~~~  260 (291)
                      ..++++++|.|+ |.+|...++.+...|+ +|+.++++.++.+.+    ++.+...  +  .|.+. ...++.+.+..+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            457889999987 9999999988888899 899999887664333    2333221  1  23321 1233333333332


Q ss_pred             c--CCccEEEEccCC
Q 022819          261 D--GGADYSFECIGD  273 (291)
Q Consensus       261 ~--g~~d~vld~~g~  273 (291)
                      .  +.+|+++.+.+.
T Consensus        88 ~~~~~id~vi~~Ag~  102 (247)
T PRK08945         88 EQFGRLDGVLHNAGL  102 (247)
T ss_pred             HHhCCCCEEEECCcc
Confidence            2  378999988764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.71  E-value=0.31  Score=41.95  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=29.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      ..+|+|+|+|++|..++..+..+|..+++.+|.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~   53 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD   53 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            568999999999999999999999988888854

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK04457 spermidine synthase; Provisional

Probab=94.71  E-value=0.3  Score=43.05  Aligned_cols=92  Identities=12%  Similarity=0.113  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-CCc----e--EeCCCCCCchHHHHHHHHhcCCc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVT----E--FLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-g~~----~--~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      .++++||++|+| .|..+..+++.....++++++.+++-.+.+++. +..    .  ++.     .+..+.+.+. .+.+
T Consensus        65 ~~~~~vL~IG~G-~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~-----~Da~~~l~~~-~~~y  137 (262)
T PRK04457         65 PRPQHILQIGLG-GGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE-----ADGAEYIAVH-RHST  137 (262)
T ss_pred             CCCCEEEEECCC-HhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE-----CCHHHHHHhC-CCCC
Confidence            456789999886 377777777776444899999999999998874 321    1  121     2344444432 2378


Q ss_pred             cEEE-EccCC---------hHHHHHHHHhhccCccc
Q 022819          265 DYSF-ECIGD---------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vl-d~~g~---------~~~~~~~~~~l~~~G~i  290 (291)
                      |+|+ |....         .+.++.+.+.|+++|.+
T Consensus       138 D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvl  173 (262)
T PRK04457        138 DVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIF  173 (262)
T ss_pred             CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEE
Confidence            9766 33221         47789999999999986

>PRK07791 short chain dehydrogenase; Provisional

Probab=94.71  E-value=0.31  Score=43.22  Aligned_cols=80  Identities=23%  Similarity=0.262  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh---------hhHH-HHH---HcCCce-E--eCCCCCCchHHH
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP---------EKCE-KAK---AFGVTE-F--LNPNDNNEPVQQ  254 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~---------~~~~-~a~---~~g~~~-~--i~~~~~~~~~~~  254 (291)
                      -+++++||.|+ +++|.++++.+...|+ +|+.++++.         ++.+ .++   +.+... .  .|..+ .++..+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~   81 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD-WDGAAN   81 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC-HHHHHH
Confidence            46789999987 8999999998888999 888876653         3322 222   223322 2  23322 233333


Q ss_pred             HHHHHh--cCCccEEEEccCC
Q 022819          255 VIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       255 ~~~~~~--~g~~d~vld~~g~  273 (291)
                      .+++..  .+.+|+++.+.|.
T Consensus        82 ~~~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         82 LVDAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence            343332  2479999998875

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.70  E-value=0.25  Score=40.54  Aligned_cols=39  Identities=23%  Similarity=0.270  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcCCh-HHHHHHHHHHHcCCCeEEEEcCChhh
Q 022819          191 ISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEK  230 (291)
Q Consensus       191 ~~~~~~vlV~G~g~-~G~~~i~~a~~~g~~~vi~~~~~~~~  230 (291)
                      --.+++|+|+|+|. +|..++..++..|+ +|..+.++.++
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~   80 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKN   80 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchh
Confidence            35789999999986 59989999999999 78888776543

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.70  E-value=0.29  Score=41.79  Aligned_cols=79  Identities=24%  Similarity=0.287  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      ++.++||.|+ |.+|..++..+...|. .|+..+++.++++.+ ..++... .+  |..+ .+.+.+.+.+..  .+++|
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   82 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD-RDEVKALGQKAEADLEGVD   82 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            4678999987 9999999999888998 888887877766544 3333222 22  3222 123333333322  14789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        83 ~vi~~ag~   90 (245)
T PRK12936         83 ILVNNAGI   90 (245)
T ss_pred             EEEECCCC
Confidence            99999884

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.70  E-value=0.053  Score=51.45  Aligned_cols=59  Identities=8%  Similarity=0.112  Sum_probs=42.2

Q ss_pred             hhcCCCCCCEEE----EEc-CChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-eEeCCC
Q 022819          187 NVADISKGSTVV----IFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPN  246 (291)
Q Consensus       187 ~~~~~~~~~~vl----V~G-~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~~i~~~  246 (291)
                      ...++++++.+|    |+| +|++|.+++|+++.+|+ .|+++...+++....+..+.. .+.|.+
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~   91 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDAT   91 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECC
Confidence            456678888877    775 49999999999999999 888887666644444444444 245444

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=94.70  E-value=0.22  Score=42.66  Aligned_cols=97  Identities=13%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceEeC-------CCCCCch-HHHHHHHH-
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLN-------PNDNNEP-VQQVIKRI-  259 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~i~-------~~~~~~~-~~~~~~~~-  259 (291)
                      ...++.+||+.|+| .|.-++-+|. .|+ .|++++.+++-++.+ ++.+......       +.....+ +...+.++ 
T Consensus        34 ~~~~~~rvL~~gCG-~G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         34 ALPAGSRVLVPLCG-KSLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             CCCCCCeEEEeCCC-ChHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence            44567899999987 6777777775 799 999999999887765 3333221100       0000000 00001111 


Q ss_pred             --hcCCccEEEEccC--------ChHHHHHHHHhhccCcc
Q 022819          260 --TDGGADYSFECIG--------DTGMITTALQSCCDVRS  289 (291)
Q Consensus       260 --~~g~~d~vld~~g--------~~~~~~~~~~~l~~~G~  289 (291)
                        ..+.||.|+|..-        .+..++.+.++|++||+
T Consensus       111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~  150 (218)
T PRK13255        111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR  150 (218)
T ss_pred             cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence              1136899998653        14568888999999986

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=94.69  E-value=0.33  Score=41.93  Aligned_cols=79  Identities=28%  Similarity=0.357  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HH---cCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA---FGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~---~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      .++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ ++   .+... .+  |..+ ..++...+.+..  .+
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   85 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH-KQEVEAAIEHIEKDIG   85 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHhcC
Confidence            4678999987 8999999999998999 899999887765433 22   23222 22  3322 123333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        86 ~id~vi~~ag~   96 (254)
T PRK08085         86 PIDVLINNAGI   96 (254)
T ss_pred             CCCEEEECCCc
Confidence            78999999874

>PRK06484 short chain dehydrogenase; Validated

Probab=94.68  E-value=0.21  Score=48.19  Aligned_cols=79  Identities=18%  Similarity=0.339  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~---~i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||+|+ +++|.++++.+...|+ +|+.++++.++++.+ ++++...   ..|..+ .+++.+.+.+..  .+.+|
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD   81 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD-EAQIREGFEQLHREFGRID   81 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence            5788999987 8999999999999999 999998888876544 4455432   234332 233434443332  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        82 ~li~nag~   89 (520)
T PRK06484         82 VLVNNAGV   89 (520)
T ss_pred             EEEECCCc
Confidence            99998874

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.66  E-value=0.37  Score=42.43  Aligned_cols=80  Identities=19%  Similarity=0.310  Sum_probs=49.8

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh---hhHHHH-HHcCCceEe--CCCCCCchHHHHHHHHh--
Q 022819          192 SKGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNP---EKCEKA-KAFGVTEFL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       192 ~~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~---~~~~~a-~~~g~~~~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      -.++++||.|+   +++|++++..+...|+ +|+.+.+++   ++.+.+ ++++....+  |..+ ..+..+.+.+..  
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~   85 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD-EASIDAVFETLEKK   85 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC-HHHHHHHHHHHHHh
Confidence            35688999986   5899999999999999 888776653   333322 344532222  3322 233333333332  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+.+|+++.+.|.
T Consensus        86 ~g~iD~lv~nAG~   98 (272)
T PRK08159         86 WGKLDFVVHAIGF   98 (272)
T ss_pred             cCCCcEEEECCcc
Confidence            2478999999874

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.65  E-value=0.46  Score=37.13  Aligned_cols=92  Identities=14%  Similarity=0.281  Sum_probs=56.5

Q ss_pred             EEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCCh--hh-HHHHHHcCCceEeCCCCCC-chHH----------------
Q 022819          197 VVIFGL-GTVGLSVAQGAKARG--ASRIIGVDTNP--EK-CEKAKAFGVTEFLNPNDNN-EPVQ----------------  253 (291)
Q Consensus       197 vlV~G~-g~~G~~~i~~a~~~g--~~~vi~~~~~~--~~-~~~a~~~g~~~~i~~~~~~-~~~~----------------  253 (291)
                      |.|+|+ |.+|..++.+.+...  + +|+++....  ++ .+.++++....+...++.. ..+.                
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~   79 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP   79 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence            568898 999999999999887  5 677664433  22 3455678877766554210 1111                


Q ss_pred             HHHHHHhc-CCccEEEEccCChHHHHHHHHhhccCcc
Q 022819          254 QVIKRITD-GGADYSFECIGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       254 ~~~~~~~~-g~~d~vld~~g~~~~~~~~~~~l~~~G~  289 (291)
                      +.+.++.. ..+|+|+..+.+...+.-.+..++.+-+
T Consensus        80 ~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~  116 (129)
T PF02670_consen   80 EGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKD  116 (129)
T ss_dssp             HHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSE
T ss_pred             HHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCe
Confidence            11223333 3789999988887777777887776644

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK08328 hypothetical protein; Provisional

Probab=94.64  E-value=0.2  Score=43.31  Aligned_cols=35  Identities=34%  Similarity=0.510  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            34679999999999999999999999888888743

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.63  E-value=0.16  Score=45.09  Aligned_cols=80  Identities=25%  Similarity=0.385  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee----CCCCCCchHHHHHHHH--
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL----NPNDNNEPVQQVIKRI--  259 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i----~~~~~~~~~~~~~~~~--  259 (291)
                      ..+++|+|.|+ +++|.+.+.-.-.+|+ .++.+.+...+++..    ++.+... ++    |..+ .++..+.+.+.  
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~-~~~~~~~~~~~~~   87 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD-EESVKKFVEWAIR   87 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC-HHHHHHHHHHHHH
Confidence            46789999998 8999988888888899 666666777666555    4444443 22    2221 23444444332  


Q ss_pred             hcCCccEEEEccCC
Q 022819          260 TDGGADYSFECIGD  273 (291)
Q Consensus       260 ~~g~~d~vld~~g~  273 (291)
                      ..|++|+.+++.|-
T Consensus        88 ~fg~vDvLVNNAG~  101 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGI  101 (282)
T ss_pred             hcCCCCEEEecCcc
Confidence            23589999998875

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=94.61  E-value=0.051  Score=47.40  Aligned_cols=101  Identities=21%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCce-E-eCCCCC-CchHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTE-F-LNPNDN-NEPVQQVI  256 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~-~-i~~~~~-~~~~~~~~  256 (291)
                      +....++.+|++|+=.|.| .|.++..+++..|. .+|+..+.++++.+.|++    .|... + +...+- .+.+    
T Consensus        32 I~~~l~i~pG~~VlEaGtG-SG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~----  106 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAGTG-SGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF----  106 (247)
T ss_dssp             HHHHTT--TT-EEEEE--T-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG------
T ss_pred             HHHHcCCCCCCEEEEecCC-cHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc----
Confidence            4567889999999888754 45666677776652 389999999999887754    55543 1 211110 1112    


Q ss_pred             HHHhcCCcc-EEEEccCChHHHHHHHHhh-ccCccc
Q 022819          257 KRITDGGAD-YSFECIGDTGMITTALQSC-CDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d-~vld~~g~~~~~~~~~~~l-~~~G~i  290 (291)
                      .+.....+| +++|--.....+..+.+.| ++||+|
T Consensus       107 ~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i  142 (247)
T PF08704_consen  107 DEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRI  142 (247)
T ss_dssp             STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEE
T ss_pred             cccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceE
Confidence            111123677 6677777778899999999 889876

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=94.58  E-value=0.4  Score=39.71  Aligned_cols=95  Identities=17%  Similarity=0.203  Sum_probs=60.3

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~  259 (291)
                      .....+.++++||-+|+| .|..++.+++.....++++++.+++.++.+++    .+...  ++..+     ...    .
T Consensus        24 ~~~l~~~~~~~vLDiG~G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d-----~~~----~   93 (187)
T PRK08287         24 LSKLELHRAKHLIDVGAG-TGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE-----API----E   93 (187)
T ss_pred             HHhcCCCCCCEEEEECCc-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC-----chh----h
Confidence            345566788999999875 36666666666532389999999988777754    33322  22211     101    1


Q ss_pred             hcCCccEEEEccC---ChHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIG---DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g---~~~~~~~~~~~l~~~G~i  290 (291)
                      ..+.+|+|+....   -...+..+.+.|+++|++
T Consensus        94 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l  127 (187)
T PRK08287         94 LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRL  127 (187)
T ss_pred             cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEE
Confidence            1236898885432   134678889999999976

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.58  E-value=0.27  Score=42.59  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      .++++||.|+ |++|...++.+...|+ +|+.+.++ ++.+.+    .+.+... .  .|..+ .......+.+..  .+
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK-PESAEKVVKEALEEFG   90 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            5689999987 8999999999999999 88888776 332222    2233322 2  23332 122333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        91 ~id~li~~ag~  101 (258)
T PRK06935         91 KIDILVNNAGT  101 (258)
T ss_pred             CCCEEEECCCC
Confidence            78999998874

>PRK06484 short chain dehydrogenase; Validated

Probab=94.56  E-value=0.31  Score=46.98  Aligned_cols=79  Identities=24%  Similarity=0.283  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCce---EeCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTE---FLNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~---~i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      .++++||.|+ +++|+.+++.+...|+ +|+.+++++++.+.+.+ ++...   ..|..+ .++....+.+..  .+.+|
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id  345 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD-EAAVESAFAQIQARWGRLD  345 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            5788999987 8999999999999999 99999998887766543 44332   223332 233333333332  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus       346 ~li~nAg~  353 (520)
T PRK06484        346 VLVNNAGI  353 (520)
T ss_pred             EEEECCCC
Confidence            99998875

>PRK08263 short chain dehydrogenase; Provisional

Probab=94.55  E-value=0.29  Score=42.99  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCc-eEe--CCCCCCchHHHHHHHHh--cCCccE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVT-EFL--NPNDNNEPVQQVIKRIT--DGGADY  266 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~-~~i--~~~~~~~~~~~~~~~~~--~g~~d~  266 (291)
                      ++++||.|+ |.+|..+++.+...|. +|+.++++.++++.+.+ ++.. ..+  |..+ ..++...+.+..  .+++|+
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d~   80 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD-RAAVFAAVETAVEHFGRLDI   80 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            468999987 9999999998888898 89999888877665443 2221 122  3221 123333333321  247899


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++.+.|.
T Consensus        81 vi~~ag~   87 (275)
T PRK08263         81 VVNNAGY   87 (275)
T ss_pred             EEECCCC
Confidence            9999885

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.55  E-value=0.24  Score=47.51  Aligned_cols=71  Identities=28%  Similarity=0.359  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-----hHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE-----KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~-----~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      .+++|+|+|+|.+|+.++.+++.+|. .|.+++.++.     ..+.+++.|+........  .         ....+|.|
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~--~---------~~~~~D~V   82 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP--T---------LPEDTDLV   82 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc--c---------ccCCCCEE
Confidence            56789999999999999999999999 8888875542     234456677765543321  1         01257888


Q ss_pred             EEccCChH
Q 022819          268 FECIGDTG  275 (291)
Q Consensus       268 ld~~g~~~  275 (291)
                      +.+.|.++
T Consensus        83 v~s~Gi~~   90 (480)
T PRK01438         83 VTSPGWRP   90 (480)
T ss_pred             EECCCcCC
Confidence            88887643

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.55  E-value=0.32  Score=40.95  Aligned_cols=35  Identities=17%  Similarity=0.402  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      .+.+|+|+|+|++|.-++..+-..|..++..+|..
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35679999999999999999999999888888754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.53  E-value=0.3  Score=41.75  Aligned_cols=71  Identities=17%  Similarity=0.325  Sum_probs=48.6

Q ss_pred             EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--hHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          197 VVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       197 vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~--~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      |+|+|+ |.+|..+++.+...+. +|.++.++..  ..+.++..|+..+ ..+.  .+ .+.+.+.. .++|.||-+++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~--~~-~~~l~~al-~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV-EADY--DD-PESLVAAL-KGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE-ES-T--T--HHHHHHHH-TTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe-eccc--CC-HHHHHHHH-cCCceEEeecCc
Confidence            688987 9999999999999888 7888877753  3555677888654 2221  11 22333322 279999998883

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=94.52  E-value=0.48  Score=43.93  Aligned_cols=94  Identities=15%  Similarity=0.241  Sum_probs=59.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEc--CChhh-HHHHHHcCCceEeCCCCCC-chHH--------------
Q 022819          195 STVVIFGL-GTVGLSVAQGAKAR--GASRIIGVD--TNPEK-CEKAKAFGVTEFLNPNDNN-EPVQ--------------  253 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~--g~~~vi~~~--~~~~~-~~~a~~~g~~~~i~~~~~~-~~~~--------------  253 (291)
                      ++|.|+|+ |.+|..++.+.+..  .+ +|+++.  ++.++ .+.+++++...+...++.. ..+.              
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            57899996 99999999988765  45 677774  44444 3455678877765443200 1111              


Q ss_pred             HHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCcc
Q 022819          254 QVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       254 ~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~  289 (291)
                      +.+.++... .+|+|+..+++...+.-.+..++.|-+
T Consensus        81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~  117 (385)
T PRK05447         81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKR  117 (385)
T ss_pred             hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCc
Confidence            112222222 689999999986667777787776644

>PRK06940 short chain dehydrogenase; Provisional

Probab=94.50  E-value=0.37  Score=42.43  Aligned_cols=77  Identities=23%  Similarity=0.321  Sum_probs=48.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HH---cCCce-E--eCCCCCCchHHHHHHHHh-cCCcc
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA---FGVTE-F--LNPNDNNEPVQQVIKRIT-DGGAD  265 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~---~g~~~-~--i~~~~~~~~~~~~~~~~~-~g~~d  265 (291)
                      +++++|.|+|++|..++..+. .|. +|+.+++++++++.+ ++   .+... .  .|..+ .++....+.+.. .+++|
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS-RESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHhcCCCC
Confidence            357888898999999998875 788 899998887765433 22   23322 2  23332 233333333321 24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        79 ~li~nAG~   86 (275)
T PRK06940         79 GLVHTAGV   86 (275)
T ss_pred             EEEECCCc
Confidence            99999885

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.49  E-value=0.085  Score=44.72  Aligned_cols=95  Identities=15%  Similarity=0.122  Sum_probs=61.2

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~  259 (291)
                      .+..+++++++||-+|+| .|..+..+++.. . ++++++.+++..+.+++    .+...  ++..+. ...    +.  
T Consensus        71 ~~~l~~~~~~~VLeiG~G-sG~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~----~~--  140 (212)
T PRK00312         71 TELLELKPGDRVLEIGTG-SGYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG-WKG----WP--  140 (212)
T ss_pred             HHhcCCCCCCEEEEECCC-ccHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc-ccC----CC--
Confidence            456678899999999886 355555566653 3 89999999887766653    34332  221111 011    00  


Q ss_pred             hcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ..+.+|.|+-............+.|++||++
T Consensus       141 ~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~l  171 (212)
T PRK00312        141 AYAPFDRILVTAAAPEIPRALLEQLKEGGIL  171 (212)
T ss_pred             cCCCcCEEEEccCchhhhHHHHHhcCCCcEE
Confidence            1147998887655556678888999999986

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.49  E-value=0.29  Score=37.86  Aligned_cols=33  Identities=30%  Similarity=0.451  Sum_probs=25.8

Q ss_pred             EEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCCh
Q 022819          196 TVVIFGL-GTVGLSVAQGAKA-RGASRIIGVDTNP  228 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~-~g~~~vi~~~~~~  228 (291)
                      +|+|+|+ |-+|..+++.+.. .+.+-+-++++++
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~   36 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP   36 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence            5889999 9999999999998 5774455555554

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.48  E-value=0.43  Score=38.64  Aligned_cols=79  Identities=20%  Similarity=0.331  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      ++.+|+|+|+|.+|.--++.+...|+ .|.+++  ++..+.+++++.... +.+    .+    .+..-.++|+|+-+++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~~-~~~----~~----~~~dl~~a~lViaaT~   79 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYITW-KQK----TF----SNDDIKDAHLIYAATN   79 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcEE-Eec----cc----ChhcCCCceEEEECCC
Confidence            57889999999999999998888999 777773  333344444542111 111    11    1111126899999888


Q ss_pred             ChHHHHHHHHhh
Q 022819          273 DTGMITTALQSC  284 (291)
Q Consensus       273 ~~~~~~~~~~~l  284 (291)
                      ..+ .+..+..+
T Consensus        80 d~e-~N~~i~~~   90 (157)
T PRK06719         80 QHA-VNMMVKQA   90 (157)
T ss_pred             CHH-HHHHHHHH
Confidence            854 44444433

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.48  E-value=0.32  Score=42.95  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=35.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      .++++++|+|+|++|.+++..+...|+ +|+++.+++++.+.+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l  156 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL  156 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            457889999999999999988888898 888888887775433

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.43  E-value=0.32  Score=43.78  Aligned_cols=78  Identities=24%  Similarity=0.299  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----------hhHH----HHHHcCCce-Ee--CCCCCCchHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----------EKCE----KAKAFGVTE-FL--NPNDNNEPVQQ  254 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~----------~~~~----~a~~~g~~~-~i--~~~~~~~~~~~  254 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.++++.          ++.+    .++..|... .+  |..+ ..+...
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~   84 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLV-PEQVRA   84 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCC-HHHHHH
Confidence            4688999987 8999999999999999 888887763          2322    223334322 22  3322 233333


Q ss_pred             HHHHHhc--CCccEEEEcc-C
Q 022819          255 VIKRITD--GGADYSFECI-G  272 (291)
Q Consensus       255 ~~~~~~~--g~~d~vld~~-g  272 (291)
                      .+.+...  +.+|+++++. |
T Consensus        85 ~~~~~~~~~g~iDilVnnA~g  105 (305)
T PRK08303         85 LVERIDREQGRLDILVNDIWG  105 (305)
T ss_pred             HHHHHHHHcCCccEEEECCcc
Confidence            3333322  4789999988 5

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.43  E-value=0.27  Score=46.46  Aligned_cols=99  Identities=8%  Similarity=0.051  Sum_probs=60.5

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKR  258 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~  258 (291)
                      .....++++++||-+|+| -|..++++++.++..+|++++.++++++.++    ++|... +  ++.+.  ......   
T Consensus       231 ~~~L~~~~g~~VLDlcag-~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~--~~~~~~---  304 (426)
T TIGR00563       231 ATWLAPQNEETILDACAA-PGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG--RGPSQW---  304 (426)
T ss_pred             HHHhCCCCCCeEEEeCCC-ccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc--cccccc---
Confidence            344567889999998765 2444445566554339999999999987664    356542 2  22111  111000   


Q ss_pred             HhcCCccEEEE---ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFE---CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld---~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      ...+.||.||-   |+|.                         ...+..+++.|++||++
T Consensus       305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~l  364 (426)
T TIGR00563       305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTL  364 (426)
T ss_pred             ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            01236998763   4442                         24678889999999986

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK00536 speE spermidine synthase; Provisional

Probab=94.42  E-value=0.12  Score=45.54  Aligned_cols=96  Identities=11%  Similarity=-0.142  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccE-EEEc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADY-SFEC  270 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~-vld~  270 (291)
                      ...++|||+|+| =|.++-.++|.-  ++|..++-+++-.+.++++=....-..++-+-.+...+.+...+.+|+ ++|+
T Consensus        71 ~~pk~VLIiGGG-DGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGF-DLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCC-chHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC
Confidence            556899999764 244555777765  389999999999999888311100001111111112233333347995 5666


Q ss_pred             cCChHHHHHHHHhhccCccc
Q 022819          271 IGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       271 ~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +-.++..+.+.+.|+++|.+
T Consensus       148 ~~~~~fy~~~~~~L~~~Gi~  167 (262)
T PRK00536        148 EPDIHKIDGLKRMLKEDGVF  167 (262)
T ss_pred             CCChHHHHHHHHhcCCCcEE
Confidence            77778889999999999975

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=94.42  E-value=0.2  Score=44.07  Aligned_cols=97  Identities=16%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc--e--EeCCCCCCchHHHHHHHHh
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--E--FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~--~--~i~~~~~~~~~~~~~~~~~  260 (291)
                      +....++.++.+||-+|+| .|..+..+++..++ ++++++.+++..+.+++....  .  ++..     ++..  ..+.
T Consensus        44 ~l~~l~l~~~~~VLDiGcG-~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~~-----D~~~--~~~~  114 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSG-LGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEAN-----DILK--KDFP  114 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCC-CChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEEC-----Cccc--CCCC
Confidence            4456678899999999886 35556667776788 999999999888888764211  1  1111     1100  0112


Q ss_pred             cCCccEEEEc--c---C---ChHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFEC--I---G---DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~--~---g---~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.||+|+..  .   +   ....++.+.+.|++||+|
T Consensus       115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~l  152 (263)
T PTZ00098        115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGIL  152 (263)
T ss_pred             CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEE
Confidence            2378988852  1   1   135678888999999986

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=94.41  E-value=0.42  Score=45.26  Aligned_cols=97  Identities=13%  Similarity=0.131  Sum_probs=60.5

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHH
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~  259 (291)
                      ...+++++++||=.++|+ |..+++++..++ ..+|+++|.++++++.+++    +|...  ++..+.  ..+    ...
T Consensus       231 ~~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da--~~l----~~~  303 (431)
T PRK14903        231 LLMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA--ERL----TEY  303 (431)
T ss_pred             HHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hhh----hhh
Confidence            345678899998887653 444555666652 2389999999999887753    56543  222211  122    112


Q ss_pred             hcCCccEEEE---ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFE---CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld---~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      ..+.||.|+-   |+|.                         ...+..+++.|++||++
T Consensus       304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~L  362 (431)
T PRK14903        304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGIL  362 (431)
T ss_pred             hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            2347998774   4332                         12367888999999976

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.41  E-value=0.025  Score=45.13  Aligned_cols=85  Identities=22%  Similarity=0.238  Sum_probs=51.7

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC----CchHHHHHHHHhcCCccEEEEccC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN----NEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~----~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      |+|+|+|.+|...+..++..|. .|..+.+.+ +.+..++.|........+.    .......  ......+|++|-|+-
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEEEec
Confidence            6789999999999888888998 888888877 7777776654322211000    0000000  112247999999987


Q ss_pred             ChHHHHHHHHhhcc
Q 022819          273 DTGMITTALQSCCD  286 (291)
Q Consensus       273 ~~~~~~~~~~~l~~  286 (291)
                      ... ...+++.+++
T Consensus        77 a~~-~~~~l~~l~~   89 (151)
T PF02558_consen   77 AYQ-LEQALQSLKP   89 (151)
T ss_dssp             GGG-HHHHHHHHCT
T ss_pred             ccc-hHHHHHHHhh
Confidence            743 3445554443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.40  E-value=0.23  Score=44.06  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=38.0

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      +...+++++|+|+|+.+++++..+..+|+.++..+.++.++.+.+
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            344567899999999999999999999997899999988876654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.39  E-value=0.16  Score=42.92  Aligned_cols=35  Identities=37%  Similarity=0.522  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ...+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            34679999999999999999999999889999876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.37  E-value=0.33  Score=41.72  Aligned_cols=77  Identities=22%  Similarity=0.325  Sum_probs=49.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-E--eCCCCCCchHHHHHHHHh--cCCc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-F--LNPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      +++||.|+ |.+|..++..+...|. +|+++++++++.+.+..    .+... .  .|..+ ..++...+.+..  .+++
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK-EDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhcCCC
Confidence            57999987 9999999999888999 89999998876655432    22221 1  23332 233333333322  2368


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |++|.+.+.
T Consensus        80 d~vi~~a~~   88 (255)
T TIGR01963        80 DILVNNAGI   88 (255)
T ss_pred             CEEEECCCC
Confidence            999987764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.34  E-value=0.63  Score=39.42  Aligned_cols=85  Identities=18%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-hHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE-KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~-~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++++|||+|+|.+|..-++.+...|+ .|++++.... .+..+.+.|--..+. .+  .. ...+     .++++|+-++
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~-~~--~~-~~dl-----~~~~lVi~at   77 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLA-RC--FD-ADIL-----EGAFLVIAAT   77 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEe-CC--CC-HHHh-----CCcEEEEECC
Confidence            46799999999999999999999999 8888865432 333333333212222 11  11 0111     2688999998


Q ss_pred             CChHHHHHHHHhhccC
Q 022819          272 GDTGMITTALQSCCDV  287 (291)
Q Consensus       272 g~~~~~~~~~~~l~~~  287 (291)
                      +.+..-......++..
T Consensus        78 ~d~~ln~~i~~~a~~~   93 (205)
T TIGR01470        78 DDEELNRRVAHAARAR   93 (205)
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            8864444444444433

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.33  E-value=0.31  Score=40.18  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=28.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +|+|+|+|++|...++.+...|..++..+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            488999999999999999899998888888764

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=94.31  E-value=0.3  Score=45.07  Aligned_cols=98  Identities=21%  Similarity=0.350  Sum_probs=62.3

Q ss_pred             hhcCCCCCCEEEEE-cC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce--EeCCCCCCchHHHHHHH
Q 022819          187 NVADISKGSTVVIF-GL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       187 ~~~~~~~~~~vlV~-G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~--~i~~~~~~~~~~~~~~~  258 (291)
                      ...+.++|++||-. ++ |+--...+++....|. .|+++|.++.|++.+    +++|...  +++.++  ..+   ...
T Consensus       150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~-iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~--~~~---~~~  223 (355)
T COG0144         150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGA-IVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA--RRL---AEL  223 (355)
T ss_pred             HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc--ccc---ccc
Confidence            56788999999888 33 6444444444444455 789999999998766    4578874  444332  111   111


Q ss_pred             HhcC-CccEEE-E--ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          259 ITDG-GADYSF-E--CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g-~~d~vl-d--~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      ...+ .||.|+ |  |+|.                         ...+..+++++++||+|
T Consensus       224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~L  284 (355)
T COG0144         224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVL  284 (355)
T ss_pred             ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            1222 488544 4  5554                         45788889999999986

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=94.30  E-value=0.23  Score=43.17  Aligned_cols=92  Identities=14%  Similarity=0.183  Sum_probs=58.8

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhcCCccEE
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~~i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      ....++.+||-+|+|. |..+..+++ .|. +++++|.+++.++.+++.... .++..+.  .++     .+.++.+|+|
T Consensus        38 l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~d~--~~~-----~~~~~~fD~V  107 (251)
T PRK10258         38 LPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAGDI--ESL-----PLATATFDLA  107 (251)
T ss_pred             cCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEcCc--ccC-----cCCCCcEEEE
Confidence            3344678899999874 555555554 576 999999999999888775321 2222211  110     1122368988


Q ss_pred             EEccC------ChHHHHHHHHhhccCccc
Q 022819          268 FECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       268 ld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      +....      ....+..+.+.|+++|.+
T Consensus       108 ~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l  136 (251)
T PRK10258        108 WSNLAVQWCGNLSTALRELYRVVRPGGVV  136 (251)
T ss_pred             EECchhhhcCCHHHHHHHHHHHcCCCeEE
Confidence            86432      135688888999999875

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.29  E-value=0.31  Score=44.96  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            347899999999999999999999998988887653

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.29  E-value=0.53  Score=41.99  Aligned_cols=82  Identities=17%  Similarity=0.261  Sum_probs=52.9

Q ss_pred             EEEEEcCChHHHHH-HHHHHHcCCCeEEEE-cCChhh--HHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          196 TVVIFGLGTVGLSV-AQGAKARGASRIIGV-DTNPEK--CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       196 ~vlV~G~g~~G~~~-i~~a~~~g~~~vi~~-~~~~~~--~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++.|+|+|.+|... ..+.+..+. .+.++ +.++++  ++.++++|......      ++...+..   ..+|+||+++
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~~------~~e~ll~~---~dIDaV~iaT   72 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSAE------GVDGLLAN---PDIDIVFDAT   72 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEEC------CHHHHhcC---CCCCEEEECC
Confidence            57889999999865 455555567 55544 444443  56778888654431      22222221   3799999999


Q ss_pred             CChHHHHHHHHhhccC
Q 022819          272 GDTGMITTALQSCCDV  287 (291)
Q Consensus       272 g~~~~~~~~~~~l~~~  287 (291)
                      +.....+.+..++..|
T Consensus        73 p~~~H~e~a~~al~aG   88 (285)
T TIGR03215        73 SAKAHARHARLLAELG   88 (285)
T ss_pred             CcHHHHHHHHHHHHcC
Confidence            9977777776666654

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=94.29  E-value=0.53  Score=39.67  Aligned_cols=92  Identities=20%  Similarity=0.222  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH-HhcCCcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR-ITDGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~-~~~g~~d  265 (291)
                      ++.+||-+|+| .|..+..+++.....++++++.+++.++.+++    .+...  ++..     +..+.+.. +..+.+|
T Consensus        40 ~~~~VLDiGcG-tG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~-----d~~~~l~~~~~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFG-KGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCG-----DAVEVLLDMFPDGSLD  113 (202)
T ss_pred             CCCeEEEEccC-CCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEec-----CHHHHHHHHcCccccc
Confidence            66788889986 46677777776543489999999998887764    23222  2221     22122332 2234789


Q ss_pred             EEEEccC--------------ChHHHHHHHHhhccCccc
Q 022819          266 YSFECIG--------------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g--------------~~~~~~~~~~~l~~~G~i  290 (291)
                      .|+-...              .+..++.+.+.|+++|.|
T Consensus       114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l  152 (202)
T PRK00121        114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEI  152 (202)
T ss_pred             eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEE
Confidence            8775332              245789999999999976

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.26  E-value=0.31  Score=42.21  Aligned_cols=76  Identities=14%  Similarity=0.162  Sum_probs=47.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC--CceE-eCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG--VTEF-LNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g--~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      .+.+|||+|+ |.+|..++..+...|. +|+++.++.++.......+  +..+ .|..+  . . ..+.+....++|+||
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d--~-~-~~l~~~~~~~~d~vi   90 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE--G-S-DKLVEAIGDDSDAVI   90 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC--C-H-HHHHHHhhcCCCEEE
Confidence            4678999997 9999999988888898 8888888777654332111  2111 23322  1 1 122222212689999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        91 ~~~g~   95 (251)
T PLN00141         91 CATGF   95 (251)
T ss_pred             ECCCC
Confidence            88764

>PRK08278 short chain dehydrogenase; Provisional

Probab=94.25  E-value=0.3  Score=42.95  Aligned_cols=79  Identities=24%  Similarity=0.306  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-------HH-H---HHHcCCce-E--eCCCCCCchHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-------CE-K---AKAFGVTE-F--LNPNDNNEPVQQVIK  257 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-------~~-~---a~~~g~~~-~--i~~~~~~~~~~~~~~  257 (291)
                      +++++||.|+ |++|..++..+...|+ +|++++++.++       ++ .   +++.+... .  .|..+ .....+.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~   82 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD-EDQVAAAVA   82 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHH
Confidence            4578999987 8999999999888999 88888876532       11 1   22233322 2  23332 223333333


Q ss_pred             HHh--cCCccEEEEccCC
Q 022819          258 RIT--DGGADYSFECIGD  273 (291)
Q Consensus       258 ~~~--~g~~d~vld~~g~  273 (291)
                      +..  .+.+|++|.+.|.
T Consensus        83 ~~~~~~g~id~li~~ag~  100 (273)
T PRK08278         83 KAVERFGGIDICVNNASA  100 (273)
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence            221  1479999998875

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.25  E-value=0.23  Score=44.10  Aligned_cols=78  Identities=23%  Similarity=0.326  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh----HHHHHHcCCce--EeCCCCCCch---HHHHHHHHhcC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK----CEKAKAFGVTE--FLNPNDNNEP---VQQVIKRITDG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~----~~~a~~~g~~~--~i~~~~~~~~---~~~~~~~~~~g  262 (291)
                      +|+.|||.|+ +++|++.++=...+|+ +++.+|.+++.    .+.+++.|-.+  ..|-.+ .++   ..+++++.. |
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~-~eei~~~a~~Vk~e~-G  113 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD-REEIYRLAKKVKKEV-G  113 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC-HHHHHHHHHHHHHhc-C
Confidence            6899999987 7999988887778898 88888877653    33444445222  344443 233   344444432 4


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|++++..|-
T Consensus       114 ~V~ILVNNAGI  124 (300)
T KOG1201|consen  114 DVDILVNNAGI  124 (300)
T ss_pred             CceEEEecccc
Confidence            78999998885

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=94.24  E-value=0.41  Score=41.73  Aligned_cols=79  Identities=27%  Similarity=0.373  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|.|+ +++|..++..+...|+ +++.+++++++.+.+    ++.+... .  .|..+ .......+.+..  .+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD-EDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence            5678999987 8999999988888999 888888887765433    2334322 2  23322 122222333221  14


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        87 ~id~li~~ag~   97 (265)
T PRK07097         87 VIDILVNNAGI   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            68999998875

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=94.22  E-value=0.26  Score=42.27  Aligned_cols=79  Identities=19%  Similarity=0.260  Sum_probs=47.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhh-HHHH---HHcCCceE---eCCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEK-CEKA---KAFGVTEF---LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~-~~~a---~~~g~~~~---i~~~~~~~~~~~~~~~~~--~  261 (291)
                      ++++++|+|+ |++|..+++.+...|+ +++.+ .+++.+ .+.+   ++.+....   .|..+ ..+..+.+.+..  .
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   79 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGD-WDSTKAAFDKVKAEV   79 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence            3578899987 9999999999999999 66664 333332 2222   33344332   23322 123333333322  1


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        80 ~~id~li~~ag~   91 (246)
T PRK12938         80 GEIDVLVNNAGI   91 (246)
T ss_pred             CCCCEEEECCCC
Confidence            478999999885

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.22  E-value=0.39  Score=41.55  Aligned_cols=79  Identities=16%  Similarity=0.253  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++++|.|+ +++|..++..+...|+ +++.+++++++.+.+    ++.+... .  .|..+ ..+..+.+....  .+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~~   87 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFALSKLG   87 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            4789999987 8999999998889999 888888777665433    2233322 2  23332 123333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        88 ~~d~li~~ag~   98 (255)
T PRK06113         88 KVDILVNNAGG   98 (255)
T ss_pred             CCCEEEECCCC
Confidence            78999998874

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.21  E-value=0.26  Score=42.74  Aligned_cols=76  Identities=18%  Similarity=0.239  Sum_probs=47.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      +++++||.|+ |++|..+++.+...|+ +|+.+++++++..   .-.... ..|..+ .++....+.+..  .+.+|+++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~---~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~vi   82 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDDL---PEGVEFVAADLTT-AEGCAAVARAVLERLGGVDILV   82 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhhc---CCceeEEecCCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence            4789999987 8999999999988999 8999987754321   001111 123322 122222222221  24789999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        83 ~~ag~   87 (260)
T PRK06523         83 HVLGG   87 (260)
T ss_pred             ECCcc
Confidence            98873

>TIGR00417 speE spermidine synthase

Probab=94.20  E-value=0.47  Score=41.90  Aligned_cols=97  Identities=11%  Similarity=0.058  Sum_probs=57.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc--eEeCCCC---CCchHHHHHHHHhcCCccE
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNPND---NNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~--~~i~~~~---~~~~~~~~~~~~~~g~~d~  266 (291)
                      ..+++||++|+|. |..+..+++.....++.+++.+++-.+.+++.-..  ..++...   ...+..+.+++. .+.+|+
T Consensus        71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccE
Confidence            4556999998764 44455666665556899999988887777763100  0000000   002333344332 348997


Q ss_pred             EEEccC----------ChHHHHHHHHhhccCccc
Q 022819          267 SFECIG----------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~g----------~~~~~~~~~~~l~~~G~i  290 (291)
                      |+-...          ..+.++.+.+.|+++|.+
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~l  182 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIF  182 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEE
Confidence            764222          235567889999999976

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.19  E-value=0.38  Score=44.60  Aligned_cols=35  Identities=23%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45679999999999999999999999899888765

>PRK08618 ornithine cyclodeaminase; Validated

Probab=94.18  E-value=0.58  Score=42.55  Aligned_cols=86  Identities=13%  Similarity=0.105  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHH-HHcCCCeEEEEcCChhhHHHHH-H----cCCceEeCCCCCCchHHHHHHHHhcCCcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGA-KARGASRIIGVDTNPEKCEKAK-A----FGVTEFLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a-~~~g~~~vi~~~~~~~~~~~a~-~----~g~~~~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      ...++++|+|+|..|...+..+ ...++++|.++++++++.+.+. +    ++.. +..+    .+..+.+     ...|
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~----~~~~~~~-----~~aD  194 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVV----NSADEAI-----EEAD  194 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEe----CCHHHHH-----hcCC
Confidence            4567899999999998777554 4678889999999988866443 2    2432 2222    2222223     2589


Q ss_pred             EEEEccCChHHHHHHHHhhccCcc
Q 022819          266 YSFECIGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       266 ~vld~~g~~~~~~~~~~~l~~~G~  289 (291)
                      +|+.|++...-+- . +.+++|-.
T Consensus       195 iVi~aT~s~~p~i-~-~~l~~G~h  216 (325)
T PRK08618        195 IIVTVTNAKTPVF-S-EKLKKGVH  216 (325)
T ss_pred             EEEEccCCCCcch-H-HhcCCCcE
Confidence            9999998753322 2 67777643

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.17  E-value=0.48  Score=41.54  Aligned_cols=79  Identities=15%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCC---hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEe--CCCCCCchHHHHHHHHhc--
Q 022819          193 KGSTVVIFGLG---TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFL--NPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       193 ~~~~vlV~G~g---~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i--~~~~~~~~~~~~~~~~~~--  261 (291)
                      +++++||.|++   ++|.++++.+...|+ +|+.+++++...+.+++    .+....+  |..+ .++..+.+.+...  
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   82 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE-DASIDAMFAELGKVW   82 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC-HHHHHHHHHHHHhhc
Confidence            46889999873   799999988888999 88888776321222222    2322222  3332 2333334433322  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++++.|.
T Consensus        83 g~iD~linnAg~   94 (262)
T PRK07984         83 PKFDGFVHSIGF   94 (262)
T ss_pred             CCCCEEEECCcc
Confidence            479999999874

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.15  E-value=0.76  Score=38.80  Aligned_cols=78  Identities=18%  Similarity=0.148  Sum_probs=46.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-hhH-HHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP-EKC-EKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~-~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      ++.+|||+|+|.+|...+..+...|+ .|+++.... +.+ +++.+ +.- ......    +.    +..-.++|+|+-+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~-~~i-~~~~~~----~~----~~~l~~adlViaa   77 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEE-GKI-RWKQKE----FE----PSDIVDAFLVIAA   77 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhC-CCE-EEEecC----CC----hhhcCCceEEEEc
Confidence            56899999999999999988888998 788875432 122 22222 211 111111    10    0001268999999


Q ss_pred             cCChHHHHHHHH
Q 022819          271 IGDTGMITTALQ  282 (291)
Q Consensus       271 ~g~~~~~~~~~~  282 (291)
                      ++.+.. +..+.
T Consensus        78 T~d~el-N~~i~   88 (202)
T PRK06718         78 TNDPRV-NEQVK   88 (202)
T ss_pred             CCCHHH-HHHHH
Confidence            988543 44443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.14  E-value=1  Score=32.59  Aligned_cols=76  Identities=24%  Similarity=0.398  Sum_probs=49.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHcC---CCeEE-EEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          196 TVVIFGLGTVGLSVAQGAKARG---ASRII-GVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g---~~~vi-~~~~~~~~~~~a-~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      +|.++|+|.+|.+.+.-....|   . +|+ +..+++++.+.+ ++++.....      .+..+.+++     .|+||-|
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----advvila   68 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA------DDNEEAAQE-----ADVVILA   68 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES------EEHHHHHHH-----TSEEEE-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc------CChHHhhcc-----CCEEEEE
Confidence            4677899999999999999888   6 677 548999887766 556643222      123334443     7999999


Q ss_pred             cCChHHHHHHHHhh
Q 022819          271 IGDTGMITTALQSC  284 (291)
Q Consensus       271 ~g~~~~~~~~~~~l  284 (291)
                      +... .+.+.++.+
T Consensus        69 v~p~-~~~~v~~~i   81 (96)
T PF03807_consen   69 VKPQ-QLPEVLSEI   81 (96)
T ss_dssp             S-GG-GHHHHHHHH
T ss_pred             ECHH-HHHHHHHHH
Confidence            8874 344444433

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.11  E-value=0.16  Score=46.33  Aligned_cols=77  Identities=13%  Similarity=0.168  Sum_probs=47.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC--Cce-EeCCCCCCchHHHHHHHHhcC-CccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG--VTE-FLNPNDNNEPVQQVIKRITDG-GADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g--~~~-~i~~~~~~~~~~~~~~~~~~g-~~d~  266 (291)
                      ++.+|||.|+ |.+|..+++.+...|. +|++++++++..... +.++  ... .+..+-.+.   +.+.++... .+|+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~d~   78 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDA---AKLRKAIAEFKPEI   78 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCH---HHHHHHHhhcCCCE
Confidence            4689999987 9999999999999998 898888766543221 2222  111 121111111   223333333 6899


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ||.+.+.
T Consensus        79 vih~A~~   85 (349)
T TIGR02622        79 VFHLAAQ   85 (349)
T ss_pred             EEECCcc
Confidence            9998873

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.11  E-value=0.42  Score=44.64  Aligned_cols=81  Identities=20%  Similarity=0.331  Sum_probs=50.3

Q ss_pred             CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHH-------HHHHc-CCceE-eCCCCCCchHHHHHHHH
Q 022819          190 DISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE-------KAKAF-GVTEF-LNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       190 ~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-------~a~~~-g~~~~-i~~~~~~~~~~~~~~~~  259 (291)
                      +-..+.+|||+|+ |.+|..++..+...|. +|+++.++..+.+       ..+.. ++..+ .|..+ .+.+...++..
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~  133 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD-ADSLRKVLFSE  133 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC-HHHHHHHHHHh
Confidence            3456778999987 9999999999988998 8999988765432       11112 22222 23332 12233333322


Q ss_pred             hcCCccEEEEccCC
Q 022819          260 TDGGADYSFECIGD  273 (291)
Q Consensus       260 ~~g~~d~vld~~g~  273 (291)
                       ..++|+||.|.+.
T Consensus       134 -~~~~D~Vi~~aa~  146 (390)
T PLN02657        134 -GDPVDVVVSCLAS  146 (390)
T ss_pred             -CCCCcEEEECCcc
Confidence             1169999998874

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.09  E-value=0.38  Score=41.27  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEE-EcCChhhHHHH----HHcCCce-EeCCCCC-CchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIG-VDTNPEKCEKA----KAFGVTE-FLNPNDN-NEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~-~~~~~~~~~~a----~~~g~~~-~i~~~~~-~~~~~~~~~~~~--~g  262 (291)
                      ++++++|.|+ |.+|+.++..+...|+ +|+. ..++.++.+.+    ++.+... .+..+.. +.+....+.+..  .+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4578999987 9999999999999998 6655 46666554332    2334322 2222211 233333333332  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        82 ~id~vi~~ag~   92 (250)
T PRK08063         82 RLDVFVNNAAS   92 (250)
T ss_pred             CCCEEEECCCC
Confidence            78999998874

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.09  E-value=0.21  Score=40.99  Aligned_cols=44  Identities=23%  Similarity=0.323  Sum_probs=37.8

Q ss_pred             CCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          193 KGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       193 ~~~~vlV~G~g-~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      .|..|++.|+| ++|...++-+...|+ +||++.++++.+..+-+.
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e   50 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKE   50 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhh
Confidence            56788898884 899999999999999 999999999988766543

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.08  E-value=0.44  Score=42.81  Aligned_cols=87  Identities=17%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             CEEEEEcCChHHHHHH-HHHHHcCCCeEEEEcCChh--hHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          195 STVVIFGLGTVGLSVA-QGAKARGASRIIGVDTNPE--KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i-~~a~~~g~~~vi~~~~~~~--~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      -++.|+|.|.+|...+ .+.+..+.+-+.+++.+++  .++.++++|.....      .++...+.......+|+||+++
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~------~~ie~LL~~~~~~dIDiVf~AT   78 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSA------EGIDGLLAMPEFDDIDIVFDAT   78 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCccc------CCHHHHHhCcCCCCCCEEEECC
Confidence            4688999999998744 4444446633444455443  34667788764322      2232233221013699999999


Q ss_pred             CChHHHHHHHHhhccC
Q 022819          272 GDTGMITTALQSCCDV  287 (291)
Q Consensus       272 g~~~~~~~~~~~l~~~  287 (291)
                      +.....+.+..++..|
T Consensus        79 ~a~~H~e~a~~a~eaG   94 (302)
T PRK08300         79 SAGAHVRHAAKLREAG   94 (302)
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            9865555555555444

>PRK05650 short chain dehydrogenase; Provisional

Probab=94.08  E-value=0.38  Score=42.05  Aligned_cols=76  Identities=22%  Similarity=0.267  Sum_probs=48.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++|+|+ |++|..++..+...|. +|+.++++.++.+.+    +..+... .+  |..+ ..++.+.+.+..  .+++|
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD-YSQLTALAQACEEKWGGID   79 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            6889987 9999999988888999 898888887765533    2223322 22  2221 122333333222  13799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        80 ~lI~~ag~   87 (270)
T PRK05650         80 VIVNNAGV   87 (270)
T ss_pred             EEEECCCC
Confidence            99998884

>PRK07574 formate dehydrogenase; Provisional

Probab=94.08  E-value=0.42  Score=44.51  Aligned_cols=45  Identities=29%  Similarity=0.382  Sum_probs=35.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      .+++|.|+|.|.+|..+++.++.+|+ +|++.+++....+..+.++
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g  235 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELG  235 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcC
Confidence            56789999999999999999999999 9999988653333333343

>PRK12743 oxidoreductase; Provisional

Probab=94.00  E-value=0.56  Score=40.61  Aligned_cols=78  Identities=17%  Similarity=0.191  Sum_probs=47.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhhHHH----HHHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKCEK----AKAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~-~~~~~~~~----a~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++||.|+ +++|..+++.+...|+ +|+.+. ++.++.+.    +++.+... .  .|..+ ..+....+.+..  .+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   79 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD-LPEGAQALDKLIQRLG   79 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            468999987 8999999999999999 777664 34443332    23345332 2  23322 122223333322  13


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        80 ~id~li~~ag~   90 (256)
T PRK12743         80 RIDVLVNNAGA   90 (256)
T ss_pred             CCCEEEECCCC
Confidence            78999998874

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=93.99  E-value=0.29  Score=40.59  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce--EeCCCCCCchHHHHHHHHhcCCccE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE--FLNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~--~i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      ++++||-+|+| .|..++.+++.....+|++++.+++..+.++    +.+.+.  ++..     +..+ +  ...+.+|+
T Consensus        42 ~~~~vLDiGcG-tG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~-----d~~~-~--~~~~~fD~  112 (181)
T TIGR00138        42 DGKKVIDIGSG-AGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG-----RAED-F--QHEEQFDV  112 (181)
T ss_pred             CCCeEEEecCC-CCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec-----chhh-c--cccCCccE
Confidence            37889999875 3555556565543338999999998766654    345432  2221     1111 1  11247998


Q ss_pred             EEEcc-C-ChHHHHHHHHhhccCccc
Q 022819          267 SFECI-G-DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~-g-~~~~~~~~~~~l~~~G~i  290 (291)
                      |+-.. . -+..++.+.+.|+++|++
T Consensus       113 I~s~~~~~~~~~~~~~~~~LkpgG~l  138 (181)
T TIGR00138       113 ITSRALASLNVLLELTLNLLKVGGYF  138 (181)
T ss_pred             EEehhhhCHHHHHHHHHHhcCCCCEE
Confidence            87543 1 245667778899999976

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=93.99  E-value=0.36  Score=42.49  Aligned_cols=96  Identities=14%  Similarity=0.116  Sum_probs=60.9

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcC-------Cc--eEeCCCCCCchHHHHH
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFG-------VT--EFLNPNDNNEPVQQVI  256 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g-------~~--~~i~~~~~~~~~~~~~  256 (291)
                      +..++.++++||-+|+| .|..+..+++..+. .+|+++|.+++-++.+++..       ..  .++..+.  .++    
T Consensus        67 ~~~~~~~~~~VLDlGcG-tG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~--~~l----  139 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCG-SGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA--TDL----  139 (261)
T ss_pred             HHhCCCCCCEEEEECCc-CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc--ccC----
Confidence            34467789999999886 35566677776652 38999999999888886421       11  1121111  110    


Q ss_pred             HHHhcCCccEEEEccC------ChHHHHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                       .+.++.||.|+-..+      ....++++.+.|++||++
T Consensus       140 -p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l  178 (261)
T PLN02233        140 -PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRV  178 (261)
T ss_pred             -CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEE
Confidence             111236898875322      135688999999999986

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.98  E-value=0.46  Score=42.61  Aligned_cols=79  Identities=19%  Similarity=0.281  Sum_probs=47.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hhHH-H---HHHcCCceE-e--CCCCCCchHHHHHHHHh-cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCE-K---AKAFGVTEF-L--NPNDNNEPVQQVIKRIT-DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~~-~---a~~~g~~~~-i--~~~~~~~~~~~~~~~~~-~g  262 (291)
                      +++++||+|+ +++|...+..+...|+ +|+.+++.. ++.+ .   ++..|.... +  |..+ .+...+.+.+.. .+
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d-~~~~~~~~~~~~~~g   88 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQ-RATADELVATAVGLG   88 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHHhC
Confidence            4678999987 8999999999888999 888887643 2222 2   223343322 2  2222 122222222211 25


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        89 ~iD~li~nAG~   99 (306)
T PRK07792         89 GLDIVVNNAGI   99 (306)
T ss_pred             CCCEEEECCCC
Confidence            89999998875

>PRK06128 oxidoreductase; Provisional

Probab=93.97  E-value=0.39  Score=42.87  Aligned_cols=79  Identities=24%  Similarity=0.276  Sum_probs=48.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--h----HHHHHHcCCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--K----CEKAKAFGVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~--~----~~~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      +++++||.|+ |++|..++..+...|+ +|+.+.++.+  +    .+.+++.+... .+  |..+ ..+..+.+.+..  
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  131 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD-EAFCRQLVERAVKE  131 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHHHHH
Confidence            4689999987 9999999999999999 7777654332  1    12233344332 22  3322 122333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus       132 ~g~iD~lV~nAg~  144 (300)
T PRK06128        132 LGGLDILVNIAGK  144 (300)
T ss_pred             hCCCCEEEECCcc
Confidence            2479999998874

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=93.94  E-value=0.34  Score=39.30  Aligned_cols=73  Identities=18%  Similarity=0.323  Sum_probs=51.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC----CCchHHHHHHHHhcC-CccEEE
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND----NNEPVQQVIKRITDG-GADYSF  268 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~----~~~~~~~~~~~~~~g-~~d~vl  268 (291)
                      .+|+|.|+ |.+|.+.++..++.+. -|..++.++....     ....+++.+.    .++...+++.+...+ .+|.||
T Consensus         4 grVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe~A-----d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~   77 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENEQA-----DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVF   77 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeecccccc-----cceEEecCCcchhHHHHHHHHHHHHhhcccccceEE
Confidence            56888877 9999999999999998 8888887665431     1223343321    234455556666667 999999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      ...|+
T Consensus        78 CVAGG   82 (236)
T KOG4022|consen   78 CVAGG   82 (236)
T ss_pred             Eeecc
Confidence            88776

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=93.91  E-value=0.58  Score=39.05  Aligned_cols=70  Identities=24%  Similarity=0.358  Sum_probs=53.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      ++++.+||-+|+| -|.....+.+.+++ ...+++.++++...+.+-|.. |+..     +.-+.+..+.++.||.|+
T Consensus        11 I~pgsrVLDLGCG-dG~LL~~L~~~k~v-~g~GvEid~~~v~~cv~rGv~-Viq~-----Dld~gL~~f~d~sFD~VI   80 (193)
T PF07021_consen   11 IEPGSRVLDLGCG-DGELLAYLKDEKQV-DGYGVEIDPDNVAACVARGVS-VIQG-----DLDEGLADFPDQSFDYVI   80 (193)
T ss_pred             cCCCCEEEecCCC-chHHHHHHHHhcCC-eEEEEecCHHHHHHHHHcCCC-EEEC-----CHHHhHhhCCCCCccEEe
Confidence            6899999999997 46666667777888 999999999999988888876 4432     233356666666888877

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK08219 short chain dehydrogenase; Provisional

Probab=93.86  E-value=0.33  Score=40.89  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=46.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhcC--CccEEEEc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDG--GADYSFEC  270 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i~~~~~~~~~~~~~~~~~~g--~~d~vld~  270 (291)
                      +++||.|+ |.+|..++..+... . +|++++++.++.+.+.+ .....++..+-.+.   +.+.++...  ++|.++.+
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~~id~vi~~   78 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDLTDP---EAIAAAVEQLGRLDVLVHN   78 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCCCCH---HHHHHHHHhcCCCCEEEEC
Confidence            57999987 99999998877766 6 89999998877655543 21112222221112   233333222  68999999


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .|.
T Consensus        79 ag~   81 (227)
T PRK08219         79 AGV   81 (227)
T ss_pred             CCc
Confidence            875

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=93.86  E-value=0.93  Score=39.92  Aligned_cols=97  Identities=12%  Similarity=0.072  Sum_probs=58.6

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHhcC
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~----~~g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ...++++++||-.++|+ |..++.+++.++ ...|++++.++++++.++    +.|...+.....   +... +.. ..+
T Consensus        66 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~---D~~~-~~~-~~~  139 (264)
T TIGR00446        66 ALEPDPPERVLDMAAAP-GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNF---DGRV-FGA-AVP  139 (264)
T ss_pred             HhCCCCcCEEEEECCCc-hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC---CHHH-hhh-hcc
Confidence            34668899998887753 444455555543 238999999999987764    356543221111   1111 111 123


Q ss_pred             CccEEEE---ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          263 GADYSFE---CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld---~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      .||.||-   |+|.                         ...+..++++|++||+|
T Consensus       140 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~l  195 (264)
T TIGR00446       140 KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVL  195 (264)
T ss_pred             CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            6897764   3332                         23678888999999986

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.86  E-value=0.54  Score=40.98  Aligned_cols=79  Identities=16%  Similarity=0.339  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh---hhHHHH-HHc-CCc-eE--eCCCCCCchHHHHHHHHhc
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNP---EKCEKA-KAF-GVT-EF--LNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~---~~~~~a-~~~-g~~-~~--i~~~~~~~~~~~~~~~~~~  261 (291)
                      .+++++|.|+   +++|.++++.+...|+ +|+.+.++.   ++++.+ +++ +.. ..  .|..+ .++..+.+++...
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~   83 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS-DEEITACFETIKE   83 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHHHHH
Confidence            4688999986   5999999998888999 888876542   333333 333 221 12  23332 2333333443322


Q ss_pred             --CCccEEEEccCC
Q 022819          262 --GGADYSFECIGD  273 (291)
Q Consensus       262 --g~~d~vld~~g~  273 (291)
                        +.+|+++.+.|.
T Consensus        84 ~~g~ld~lv~nag~   97 (257)
T PRK08594         84 EVGVIHGVAHCIAF   97 (257)
T ss_pred             hCCCccEEEECccc
Confidence              579999998763

>PRK08223 hypothetical protein; Validated

Probab=93.86  E-value=0.28  Score=43.69  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ...+|+|+|+|++|..++..+..+|..++..+|.+
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            45679999999999999999999999888888754

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=93.85  E-value=0.19  Score=44.65  Aligned_cols=44  Identities=25%  Similarity=0.333  Sum_probs=37.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      ..+++++|+|+|++|.+++..+..+|+.+|+++.++.++.+.+.
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~  164 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA  164 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            35678999999999999999999999669999999988765543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.84  E-value=0.29  Score=38.32  Aligned_cols=33  Identities=36%  Similarity=0.523  Sum_probs=28.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      ..+|+|+|+|++|..++..+...|..++..+|.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~   34 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD   34 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence            468999999999999999999999988888875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN03139 formate dehydrogenase; Provisional

Probab=93.83  E-value=0.44  Score=44.40  Aligned_cols=45  Identities=27%  Similarity=0.259  Sum_probs=36.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      .+++|.|+|.|.+|...++.++.+|+ +|++.+++....+..++.|
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g  242 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETG  242 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcC
Confidence            57899999999999999999999999 8999987654434444444

>PLN02823 spermine synthase

Probab=93.83  E-value=0.45  Score=43.49  Aligned_cols=96  Identities=10%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC-ce-Ee-CCCC--CCchHHHHHHHHhcCCccEE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-TE-FL-NPND--NNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~-~~-~i-~~~~--~~~~~~~~~~~~~~g~~d~v  267 (291)
                      ..++|||+|+| -|..+..+++..+.+++++++.+++-.+.++++-. .. .. +.+-  ...|....+++ ..+.+|+|
T Consensus       103 ~pk~VLiiGgG-~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~yDvI  180 (336)
T PLN02823        103 NPKTVFIMGGG-EGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEKFDVI  180 (336)
T ss_pred             CCCEEEEECCC-chHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCCccEE
Confidence            45789999875 34555667777666799999999999999987521 10 01 1000  01334445543 33489965


Q ss_pred             E-EccC-----------ChHHHH-HHHHhhccCccc
Q 022819          268 F-ECIG-----------DTGMIT-TALQSCCDVRSI  290 (291)
Q Consensus       268 l-d~~g-----------~~~~~~-~~~~~l~~~G~i  290 (291)
                      | |...           ..+.++ .+.+.|+++|.+
T Consensus       181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvl  216 (336)
T PLN02823        181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIF  216 (336)
T ss_pred             EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEE
Confidence            5 4221           123565 788899999975

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.81  E-value=0.64  Score=39.54  Aligned_cols=79  Identities=23%  Similarity=0.359  Sum_probs=47.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-hHH-H---HHHcCCce-Ee--CCCCCCchHHHHHHHHhc--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCE-K---AKAFGVTE-FL--NPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~-~~~-~---a~~~g~~~-~i--~~~~~~~~~~~~~~~~~~--  261 (291)
                      +++++||.|+ |.+|...+..+...|+ +|+++.++.+ +.+ .   ++..+... .+  |..+ ..++.+.+.+...  
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   81 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD-AESVERAVDEAKAEF   81 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            4578999987 9999999999999999 7766655443 222 1   22223222 22  3322 1233333333322  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|.++.+.|.
T Consensus        82 ~~id~vi~~ag~   93 (248)
T PRK05557         82 GGVDILVNNAGI   93 (248)
T ss_pred             CCCCEEEECCCc
Confidence            368999998874

>PRK07775 short chain dehydrogenase; Provisional

Probab=93.78  E-value=0.78  Score=40.24  Aligned_cols=79  Identities=20%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +.++++|+|+ |.+|..+++.+...|+ +|+++.++.++.+.+    +..+... .+  |..+ ..+..+.+.+..  .+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   86 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD-PDSVKSFVAQAEEALG   86 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence            3468999987 9999999998888999 888888877654432    2234322 22  3322 123333333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|++|.+.|.
T Consensus        87 ~id~vi~~Ag~   97 (274)
T PRK07775         87 EIEVLVSGAGD   97 (274)
T ss_pred             CCCEEEECCCc
Confidence            78999998875

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=93.77  E-value=0.24  Score=37.29  Aligned_cols=90  Identities=22%  Similarity=0.282  Sum_probs=54.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHHHHhcCCccE
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      |.+||-.|+| .|...+.+++.. ..++++++.++...++++..    +..   .++.     .++.+....+..+.+|+
T Consensus         1 g~~vlD~~~G-~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~D~   73 (117)
T PF13659_consen    1 GDRVLDPGCG-SGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIV-----GDARDLPEPLPDGKFDL   73 (117)
T ss_dssp             TEEEEEETST-TCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE-----SHHHHHHHTCTTT-EEE
T ss_pred             CCEEEEcCcc-hHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEE-----CchhhchhhccCceeEE
Confidence            4577777654 344444555544 34999999999998888652    221   1221     34444443444458998


Q ss_pred             EEEccCC--------------hHHHHHHHHhhccCccc
Q 022819          267 SFECIGD--------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~g~--------------~~~~~~~~~~l~~~G~i  290 (291)
                      |+-+..-              ...++.+.+.|+++|.+
T Consensus        74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~  111 (117)
T PF13659_consen   74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVL  111 (117)
T ss_dssp             EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEE
T ss_pred             EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEE
Confidence            8864332              23478899999999975

...

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=93.75  E-value=0.41  Score=42.86  Aligned_cols=124  Identities=18%  Similarity=0.188  Sum_probs=67.7

Q ss_pred             ccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          156 SGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       156 ~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      ...++++.+++-|-    ...+-.|++..-+.....+++.++|-+|+| .|.+++. |..+|+++++++|.++--.+.++
T Consensus       129 ~~~~i~lDPGlAFG----TG~HpTT~lcL~~Le~~~~~g~~vlDvGcG-SGILaIA-a~kLGA~~v~g~DiDp~AV~aa~  202 (300)
T COG2264         129 DELNIELDPGLAFG----TGTHPTTSLCLEALEKLLKKGKTVLDVGCG-SGILAIA-AAKLGAKKVVGVDIDPQAVEAAR  202 (300)
T ss_pred             CceEEEEccccccC----CCCChhHHHHHHHHHHhhcCCCEEEEecCC-hhHHHHH-HHHcCCceEEEecCCHHHHHHHH
Confidence            34556666666432    233444444422222345799999999985 3544443 44568879999999886665554


Q ss_pred             H----cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          236 A----FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       236 ~----~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      +    =+..... ... ...   .......+.+|+|+-++=.   -....+....++++|++
T Consensus       203 eNa~~N~v~~~~-~~~-~~~---~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~l  259 (300)
T COG2264         203 ENARLNGVELLV-QAK-GFL---LLEVPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRL  259 (300)
T ss_pred             HHHHHcCCchhh-hcc-ccc---chhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceE
Confidence            3    1222100 000 000   0111122479988865532   13456677788888865

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=93.75  E-value=0.67  Score=40.90  Aligned_cols=89  Identities=13%  Similarity=0.083  Sum_probs=56.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHc----CCCeEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhcCCccE
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKAR----GASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~----g~~~vi~~~~~~~~~~~a~~~g~~-~~i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      .+..+||-+|+| .|..+..+++..    +. .++++|.+++-++.+++.... .++..+.  .++     .+.++.+|+
T Consensus        84 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~~-~v~giD~s~~~l~~A~~~~~~~~~~~~d~--~~l-----p~~~~sfD~  154 (272)
T PRK11088         84 EKATALLDIGCG-EGYYTHALADALPEITTM-QLFGLDISKVAIKYAAKRYPQVTFCVASS--HRL-----PFADQSLDA  154 (272)
T ss_pred             CCCCeEEEECCc-CCHHHHHHHHhcccccCC-eEEEECCCHHHHHHHHHhCCCCeEEEeec--ccC-----CCcCCceeE
Confidence            345678888885 455666666553    23 799999999988888754221 1221111  110     112337999


Q ss_pred             EEEccCChHHHHHHHHhhccCccc
Q 022819          267 SFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |+.... +..+++..+.|+++|.+
T Consensus       155 I~~~~~-~~~~~e~~rvLkpgG~l  177 (272)
T PRK11088        155 IIRIYA-PCKAEELARVVKPGGIV  177 (272)
T ss_pred             EEEecC-CCCHHHHHhhccCCCEE
Confidence            987554 45678899999999976

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=93.75  E-value=0.42  Score=41.64  Aligned_cols=79  Identities=18%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh------hhHHHHHHcCC-ceE--eCCCCCCchHHHHHHHHh
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNP------EKCEKAKAFGV-TEF--LNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~------~~~~~a~~~g~-~~~--i~~~~~~~~~~~~~~~~~  260 (291)
                      ++++++|.|+   +++|.+++..+...|+ +|+.+.++.      +..+.+++.+. ...  .|..+ .++..+.+.+..
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~   82 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQD-DAQIEETFETIK   82 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCC-HHHHHHHHHHHH
Confidence            4688999985   4899999999888999 777664322      22333322221 122  23322 233333333332


Q ss_pred             --cCCccEEEEccCC
Q 022819          261 --DGGADYSFECIGD  273 (291)
Q Consensus       261 --~g~~d~vld~~g~  273 (291)
                        .+.+|+++++.|.
T Consensus        83 ~~~g~iD~lv~nag~   97 (258)
T PRK07370         83 QKWGKLDILVHCLAF   97 (258)
T ss_pred             HHcCCCCEEEEcccc
Confidence              2479999999874

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=93.73  E-value=0.45  Score=44.70  Aligned_cols=74  Identities=20%  Similarity=0.316  Sum_probs=48.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCc-eE--eCCCCCCchHHHHHHHHhcCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVT-EF--LNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~-~~--i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      ++++++|.|+ |++|.+.+..+...|+ +|+++++++++.+... ..... ..  .|..+  .   +.+.+.. +++|++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd--~---~~v~~~l-~~IDiL  249 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVGQ--E---AALAELL-EKVDIL  249 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC--H---HHHHHHh-CCCCEE
Confidence            4689999987 9999999998888999 8998988776654321 11111 12  23322  2   1233322 369999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +.+.|.
T Consensus       250 InnAGi  255 (406)
T PRK07424        250 IINHGI  255 (406)
T ss_pred             EECCCc
Confidence            988774

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.73  E-value=0.53  Score=44.55  Aligned_cols=77  Identities=19%  Similarity=0.210  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      +..+++|+|.|.+|..+++.+...|. .+++++.++++.+.+++.+.. .++.-+   ..-.+.+++..-..+|.|+-++
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~~~~~~i~gd---~~~~~~L~~~~~~~a~~vi~~~  305 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEELPNTLVLHGD---GTDQELLEEEGIDEADAFIALT  305 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHCCCCeEEECC---CCCHHHHHhcCCccCCEEEECC
Confidence            46789999999999999999999998 899999999988877764322 223222   1122344444333788888777


Q ss_pred             CC
Q 022819          272 GD  273 (291)
Q Consensus       272 g~  273 (291)
                      +.
T Consensus       306 ~~  307 (453)
T PRK09496        306 ND  307 (453)
T ss_pred             CC
Confidence            75

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.72  E-value=0.71  Score=40.28  Aligned_cols=79  Identities=19%  Similarity=0.334  Sum_probs=48.8

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCC---hhhHHHH-HHcCCceE--eCCCCCCchHHHHHHHHhc--
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTN---PEKCEKA-KAFGVTEF--LNPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~---~~~~~~a-~~~g~~~~--i~~~~~~~~~~~~~~~~~~--  261 (291)
                      +++++||.|+   +++|+++++.+...|+ +|+.+.+.   +++++.+ ++++....  .|..+ .++..+.+.+...  
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~   82 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVAS-DEQIDALFASLGQHW   82 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCC-HHHHHHHHHHHHHHh
Confidence            4688999983   5899999988888999 78776543   3333332 33443222  23332 2334444443322  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++++.|.
T Consensus        83 g~iD~lvnnAG~   94 (260)
T PRK06997         83 DGLDGLVHSIGF   94 (260)
T ss_pred             CCCcEEEEcccc
Confidence            579999998874

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=93.72  E-value=0.2  Score=44.59  Aligned_cols=43  Identities=33%  Similarity=0.455  Sum_probs=38.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      ++++++|+|+|+.+.+++..+...|+.+++++.|+.+|.+.+.
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La  167 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA  167 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            5799999999999999999999999879999999888866554

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=93.63  E-value=0.54  Score=40.07  Aligned_cols=95  Identities=18%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHcCCc-------eEeCCCCCCchHHHHHHHH
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGVT-------EFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~g~~-------~~i~~~~~~~~~~~~~~~~  259 (291)
                      .....++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.-..       .++..+.  .+.     ..
T Consensus        46 ~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~  117 (239)
T PRK00216         46 WLGVRPGDKVLDLACGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA--EAL-----PF  117 (239)
T ss_pred             HhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc--ccC-----CC
Confidence            34456778999999876 778888888775 23999999999888877664211       1111111  110     01


Q ss_pred             hcCCccEEEEccC------ChHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      ..+.+|+|+-...      ....+..+.+.|+++|++
T Consensus       118 ~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~l  154 (239)
T PRK00216        118 PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRL  154 (239)
T ss_pred             CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEE
Confidence            2236888764221      245678888999999975

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=93.59  E-value=0.63  Score=40.43  Aligned_cols=78  Identities=24%  Similarity=0.302  Sum_probs=48.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH-HH----cCCce-E--eCCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA-KA----FGVTE-F--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a-~~----~g~~~-~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      +++++||.|+ +++|.+++..+...|+ +|+.+.+ ++++.+.+ ++    .+... .  .|..+ .++..+.+.+..  
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   84 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE-PETYKELFKKIDED   84 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHh
Confidence            5789999987 8999999999999999 7777643 44443322 22    23221 2  23332 233333333332  


Q ss_pred             cCCccEEEEccC
Q 022819          261 DGGADYSFECIG  272 (291)
Q Consensus       261 ~g~~d~vld~~g  272 (291)
                      .+.+|+++.+.|
T Consensus        85 ~g~id~lv~nAg   96 (260)
T PRK08416         85 FDRVDFFISNAI   96 (260)
T ss_pred             cCCccEEEECcc
Confidence            247899999875

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=93.56  E-value=0.98  Score=43.25  Aligned_cols=96  Identities=13%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHHhcCCc
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a----~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      .++++++||-..+++=|. +.++|..++ -..+++.+.++.|++.+    +++|...+.....+...+    .+...+.|
T Consensus       110 ~~~pg~~VLD~CAAPGgK-Tt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~----~~~~~~~f  184 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSK-TTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF----GAALPETF  184 (470)
T ss_pred             CCCCCCEEEEeCCCccHH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh----hhhchhhc
Confidence            668999998886543343 345555553 23899999999997766    457876643222211222    11222368


Q ss_pred             cEEE-E--ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          265 DYSF-E--CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vl-d--~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      |.|+ |  |+|.                         ...+..+++.|++||+|
T Consensus       185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L  238 (470)
T PRK11933        185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTL  238 (470)
T ss_pred             CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence            8655 4  5553                         34577888999999986

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.53  E-value=0.64  Score=39.66  Aligned_cols=80  Identities=14%  Similarity=0.172  Sum_probs=47.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-hHH----HHHHcCCce-EeCCCCC-CchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCE----KAKAFGVTE-FLNPNDN-NEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~-~~~----~a~~~g~~~-~i~~~~~-~~~~~~~~~~~~--~g  262 (291)
                      ++++++|+|+ |++|..++..+...|+ +++.+.++.+ +.+    .+++.+... .+..+-. ..+..+.+.+..  .+
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5678999987 9999999999999999 7766655432 222    222333322 2222211 123333333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        83 ~id~vi~~ag~   93 (245)
T PRK12937         83 RIDVLVNNAGV   93 (245)
T ss_pred             CCCEEEECCCC
Confidence            78999998884

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=93.52  E-value=0.28  Score=42.73  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.   ..... ..|..+ ..++.+.+.+..  .+.+|+++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~---~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id~li   82 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQH---ENYQFVPTDVSS-AEEVNHTVAEIIEKFGRIDGLV   82 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcccccc---CceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 8999999999999999 88888877655321   11111 223332 133333333322  24789999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        83 ~~Ag~   87 (266)
T PRK06171         83 NNAGI   87 (266)
T ss_pred             ECCcc
Confidence            98874

>TIGR00452 methyltransferase, putative

Probab=93.52  E-value=0.26  Score=44.60  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=57.8

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHH---HHHc-CC---ceEeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK---AKAF-GV---TEFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~---a~~~-g~---~~~i~~~~~~~~~~~~~~  257 (291)
                      +.......++++||-+|+|. |..+..++. .|+..|++++.++.-+..   ++++ +.   ..++..+         +.
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~-~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~---------ie  181 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGS-GYHMWRMLG-HGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLG---------IE  181 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCC-cHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECC---------HH
Confidence            34444567789999999874 666666654 476689999988865432   2332 21   1122111         12


Q ss_pred             HHhc-CCccEEEEcc-----CC-hHHHHHHHHhhccCccc
Q 022819          258 RITD-GGADYSFECI-----GD-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~-g~~d~vld~~-----g~-~~~~~~~~~~l~~~G~i  290 (291)
                      ++.. ..||+|+-.-     .. ...+..+.+.|++||+|
T Consensus       182 ~lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~L  221 (314)
T TIGR00452       182 QLHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGEL  221 (314)
T ss_pred             HCCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEE
Confidence            2222 2689887531     12 36789999999999986

Known examples to date are restricted to the proteobacteria.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=93.51  E-value=0.21  Score=42.73  Aligned_cols=97  Identities=15%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHc----CCce--EeCCCCCCchHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----GVTE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~----g~~~--~i~~~~~~~~~~~~~~~  258 (291)
                      .....++++++||-+|+| .|..+..+++..+. .++++++.+++..+.+++.    +.+.  ++..+.  .++     .
T Consensus        38 l~~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~-----~  109 (231)
T TIGR02752        38 MKRMNVQAGTSALDVCCG-TADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA--MEL-----P  109 (231)
T ss_pred             HHhcCCCCCCEEEEeCCC-cCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech--hcC-----C
Confidence            344567889999999886 45566777776542 2899999999888777642    2221  121111  110     1


Q ss_pred             HhcCCccEEEEccC-----C-hHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIG-----D-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g-----~-~~~~~~~~~~l~~~G~i  290 (291)
                      +..+.+|+|+-+..     . ...++.+.+.|++||++
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l  147 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKV  147 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEE
Confidence            12237898874321     1 34577888999999976

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.50  E-value=0.45  Score=45.07  Aligned_cols=72  Identities=18%  Similarity=0.248  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh----hHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE----KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~----~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      .+++++|+|.|.+|++++.++...|+ +|++.+.+..    ..+.+++.|.......+.  .+.   +    ..++|+|+
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~---~----~~~~d~vV   73 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIKVICGSHP--LEL---L----DEDFDLMV   73 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCEEEeCCCC--HHH---h----cCcCCEEE
Confidence            46789999998899999999999999 8999886542    223445566644332211  111   1    11478888


Q ss_pred             EccCCh
Q 022819          269 ECIGDT  274 (291)
Q Consensus       269 d~~g~~  274 (291)
                      .+.|-+
T Consensus        74 ~s~gi~   79 (447)
T PRK02472         74 KNPGIP   79 (447)
T ss_pred             ECCCCC
Confidence            887653

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=93.50  E-value=0.86  Score=38.65  Aligned_cols=94  Identities=19%  Similarity=0.208  Sum_probs=55.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHH-HhcCCccEEE
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR-ITDGGADYSF  268 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~-~~~g~~d~vl  268 (291)
                      ++++++||=+|+|+ |..+..+++..+. .+|+++|.++-.     .+.-..++.-+-.+....+.+.+ +..+.+|+|+
T Consensus        49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~  122 (209)
T PRK11188         49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVM  122 (209)
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEe
Confidence            57888998898752 4455556665542 389999987621     11111233332212333344444 3334899998


Q ss_pred             Ecc-----CC------------hHHHHHHHHhhccCccc
Q 022819          269 ECI-----GD------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       269 d~~-----g~------------~~~~~~~~~~l~~~G~i  290 (291)
                      ...     |.            ...++.+.+.|++||++
T Consensus       123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~  161 (209)
T PRK11188        123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSF  161 (209)
T ss_pred             cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence            643     21            23578888999999976

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=93.49  E-value=0.13  Score=45.82  Aligned_cols=87  Identities=14%  Similarity=0.087  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHHHhcCCccEE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      ++.+||-+|+| .|..++.+++ .|. +|+++|.+++.++.+++.    +... +...+     ....  . ..+.+|+|
T Consensus       120 ~~~~vLDlGcG-~G~~~~~la~-~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D-----~~~~--~-~~~~fD~I  188 (287)
T PRK12335        120 KPGKALDLGCG-QGRNSLYLAL-LGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYD-----INSA--S-IQEEYDFI  188 (287)
T ss_pred             CCCCEEEeCCC-CCHHHHHHHH-CCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEec-----hhcc--c-ccCCccEE
Confidence            44589999886 4556666666 477 999999999887776542    3321 11111     1000  0 12479998


Q ss_pred             EEccC--------ChHHHHHHHHhhccCccc
Q 022819          268 FECIG--------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       268 ld~~g--------~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+.-        .+..+..+.+.|++||.+
T Consensus       189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~  219 (287)
T PRK12335        189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYN  219 (287)
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCcEE
Confidence            86531        134678888899999973

>TIGR02415 23BDH acetoin reductases

Probab=93.48  E-value=0.57  Score=40.27  Aligned_cols=77  Identities=19%  Similarity=0.252  Sum_probs=48.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      ++++|.|+ |.+|...++.+...|+ +|+.+.+++++.+.+    ++.+... .+  |..+ .....+.+.+..  .+.+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~i   78 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD-KDQVFSAIDQAAEKFGGF   78 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCCC
Confidence            46889987 9999999999989999 888888876654332    2233322 22  3322 133333333332  2368


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus        79 d~vi~~ag~   87 (254)
T TIGR02415        79 DVMVNNAGV   87 (254)
T ss_pred             CEEEECCCc
Confidence            999998875

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=93.47  E-value=0.41  Score=42.04  Aligned_cols=73  Identities=15%  Similarity=0.132  Sum_probs=50.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~  273 (291)
                      +|||+|+.+-|..++..+...|. +|+++.+++.+.+.+.+.|...++.-..+..+    +.++... ++|+|+|++-.
T Consensus         2 ~ILvlGGT~egr~la~~L~~~g~-~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~----l~~~l~~~~i~~VIDAtHP   75 (256)
T TIGR00715         2 TVLLMGGTVDSRAIAKGLIAQGI-EILVTVTTSEGKHLYPIHQALTVHTGALDPQE----LREFLKRHSIDILVDATHP   75 (256)
T ss_pred             eEEEEechHHHHHHHHHHHhCCC-eEEEEEccCCccccccccCCceEEECCCCHHH----HHHHHHhcCCCEEEEcCCH
Confidence            68999884459999888888897 88888888888777777665554422221223    3333333 89999998775

This enzyme was found to be a monomer by gel filtration.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.46  E-value=0.62  Score=41.52  Aligned_cols=43  Identities=23%  Similarity=0.345  Sum_probs=36.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +|.|+|.|.+|...+..+...|. +|+++++++++.+.+.+.|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   43 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGA   43 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            36788999999988888888898 89999999999888877664

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=93.46  E-value=0.86  Score=41.04  Aligned_cols=78  Identities=24%  Similarity=0.285  Sum_probs=50.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHH-HHcCC---c-eE--eCCCCCCchHHHHHHHHh--cC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKA-KAFGV---T-EF--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a-~~~g~---~-~~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++|.|+ +++|.+++..+...| . +|+.+.+++++.+.+ +++..   . ..  .|..+ ..+....+.+..  .+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~   80 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGS-LDSVRQFVQQFRESGR   80 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence            568999987 899999998888889 7 888888888766543 33321   1 12  23322 123333333332  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        81 ~iD~lI~nAG~   91 (314)
T TIGR01289        81 PLDALVCNAAV   91 (314)
T ss_pred             CCCEEEECCCc
Confidence            79999998874

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.43  E-value=0.66  Score=43.91  Aligned_cols=73  Identities=19%  Similarity=0.379  Sum_probs=52.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|+|+|+|.+|...++.+...|. .++++++++++.+.+++ .+...+.- +.   .-...+.+..-..+|.++-+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~~~~~~~g-d~---~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRLDVRTVVG-NG---SSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcCEEEEEe-CC---CCHHHHHHcCCCcCCEEEEecCC
Confidence            58889999999999999999998 88999999998888876 55443321 11   11223444323378888888876

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.42  E-value=0.73  Score=39.66  Aligned_cols=77  Identities=19%  Similarity=0.295  Sum_probs=47.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-hHH----HHHHcCCce-Ee--CCCCCCchHHHHHHHHhc--CC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCE----KAKAFGVTE-FL--NPNDNNEPVQQVIKRITD--GG  263 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~-~~~----~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~~--g~  263 (291)
                      +++||.|+ |++|..++..+...|+ +|+.++++.+ +.+    .++..+... ++  |..+ ..+..+.+.+...  +.
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVAD-LSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence            57899987 9999999999999999 8888876532 221    222233222 22  3322 2333333333322  37


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        81 id~vi~~ag~   90 (256)
T PRK12745         81 IDCLVNNAGV   90 (256)
T ss_pred             CCEEEECCcc
Confidence            8999998874

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=93.39  E-value=0.49  Score=47.49  Aligned_cols=79  Identities=24%  Similarity=0.371  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H----cCCce--E--eCCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A----FGVTE--F--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~----~g~~~--~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      .++++||.|+ |++|.++++.+...|+ +|+.++++.++.+.+. +    .+...  .  .|..+ ..++.+.+.+..  
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd-~~~v~~a~~~i~~~  490 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD-EQAVKAAFADVALA  490 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC-HHHHHHHHHHHHHh
Confidence            4688999987 9999999999999999 9999988877655432 2    23211  2  23322 233333333332  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus       491 ~g~iDilV~nAG~  503 (676)
T TIGR02632       491 YGGVDIVVNNAGI  503 (676)
T ss_pred             cCCCcEEEECCCC
Confidence            2479999999884

>PRK09135 pteridine reductase; Provisional

Probab=93.38  E-value=0.75  Score=39.25  Aligned_cols=79  Identities=14%  Similarity=0.155  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hhHHHH----HHcCC--ceE--eCCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCEKA----KAFGV--TEF--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~~~a----~~~g~--~~~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      .++++||.|+ |.+|..++..+...|+ +|+.++++. ++.+.+    +....  ...  .|..+ .......+++..  
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   82 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD-PDALPELVAACVAA   82 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            4578999987 9999999988888999 888888753 333322    12211  112  23332 122333333221  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+.+|++|.+.|.
T Consensus        83 ~~~~d~vi~~ag~   95 (249)
T PRK09135         83 FGRLDALVNNASS   95 (249)
T ss_pred             cCCCCEEEECCCC
Confidence            2368999999884

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.38  E-value=0.56  Score=41.58  Aligned_cols=43  Identities=30%  Similarity=0.546  Sum_probs=37.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~   44 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL   44 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC
Confidence            57889999999999888888898 89999999998888877764

>PRK05855 short chain dehydrogenase; Validated

Probab=93.35  E-value=0.5  Score=45.89  Aligned_cols=79  Identities=20%  Similarity=0.337  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      .+.++||+|+ |++|..+++.+...|+ +|+.++++.++.+.+.    +.|... .  .|..+ .....+.+.+..  .+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g  391 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSD-ADAMEAFAEWVRAEHG  391 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence            4578999987 9999999999889999 8999999887765432    234322 2  23332 123333333332  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++++.|.
T Consensus       392 ~id~lv~~Ag~  402 (582)
T PRK05855        392 VPDIVVNNAGI  402 (582)
T ss_pred             CCcEEEECCcc
Confidence            78999999885

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.35  E-value=0.59  Score=41.65  Aligned_cols=51  Identities=16%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             CCCCEEEEEcCCh-HHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcCCceEeCC
Q 022819          192 SKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVTEFLNP  245 (291)
Q Consensus       192 ~~~~~vlV~G~g~-~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~~g~~~~i~~  245 (291)
                      -.|++++|+|.|. +|.-++.++...|+ +|+.+.+....+. .++  .++.++..
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~l~~~~~--~ADIVIsA  208 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKDMASYLK--DADVIVSA  208 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchhHHHHHh--hCCEEEEC
Confidence            3789999999865 99999999999999 8888866443332 222  34555544

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.34  E-value=0.6  Score=41.51  Aligned_cols=80  Identities=20%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-HH----HHHHcCCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CE----KAKAFGVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-~~----~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      -+++++||.|+ |.+|..++..+...|+ +|+.+.++.++ .+    .++..+... ++  |..+ ...+.+.+.+..  
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~i~~~  121 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD-EAFCKDAVEETVRE  121 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            35688999987 8999999988888999 88888776432 21    222234322 22  3322 122333333321  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+.+|+++.+.|.
T Consensus       122 ~~~iD~lI~~Ag~  134 (290)
T PRK06701        122 LGRLDILVNNAAF  134 (290)
T ss_pred             cCCCCEEEECCcc
Confidence            1478999998874

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.31  E-value=0.49  Score=35.27  Aligned_cols=80  Identities=20%  Similarity=0.277  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      ++.+|||+|+|.+|..-++.+...|+ +|.++....   +..+  +.-....     ..+    .+. -.++++|+-+++
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~~-----~~~----~~~-l~~~~lV~~at~   69 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLIR-----REF----EED-LDGADLVFAATD   69 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEEE-----SS-----GGG-CTTESEEEE-SS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHHh-----hhH----HHH-HhhheEEEecCC
Confidence            57889999999999999999999999 888887664   1112  1111221     112    110 126899999998


Q ss_pred             ChHHHHHHHHhhccCc
Q 022819          273 DTGMITTALQSCCDVR  288 (291)
Q Consensus       273 ~~~~~~~~~~~l~~~G  288 (291)
                      .+..-+...+.++..|
T Consensus        70 d~~~n~~i~~~a~~~~   85 (103)
T PF13241_consen   70 DPELNEAIYADARARG   85 (103)
T ss_dssp             -HHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhhCC
Confidence            8665555555555444

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.30  E-value=0.18  Score=48.33  Aligned_cols=95  Identities=16%  Similarity=0.150  Sum_probs=61.7

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc--CCc---eEeCCCCCCchHHHHHHHHhc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF--GVT---EFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~--g~~---~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      +...++++++||-+|+|. |..++.+++..++ ++++++.+++.++.+++.  +..   .++..+-...       .+..
T Consensus       260 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~-------~~~~  330 (475)
T PLN02336        260 DKLDLKPGQKVLDVGCGI-GGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK-------TYPD  330 (475)
T ss_pred             HhcCCCCCCEEEEEeccC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC-------CCCC
Confidence            334567888999998863 5566778887788 999999999888887642  211   1111111000       1112


Q ss_pred             CCccEEEEccC------ChHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      +.||+|+..-.      ....+..+.+.|++||+|
T Consensus       331 ~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l  365 (475)
T PLN02336        331 NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKV  365 (475)
T ss_pred             CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEE
Confidence            36898886311      145788999999999986

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=93.26  E-value=1.9  Score=38.58  Aligned_cols=61  Identities=26%  Similarity=0.333  Sum_probs=46.7

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc--CChhhHHHHHHcCCceEeCCC
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD--TNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~--~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      .+...+++|.+|+=--+|..|.+.+.+|+.+|.+.++++.  .+.+|.++++.+|+..+....
T Consensus        54 e~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          54 EKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            3456689999665545699999999999999995555553  367899999999998766554

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.25  E-value=0.88  Score=38.75  Aligned_cols=78  Identities=22%  Similarity=0.378  Sum_probs=48.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHhc--C
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRITD--G  262 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~~--g  262 (291)
                      ++++||.|+ |.+|..++..+...|+ +++.+ +++.++.+.+.    ..+... ++  |..+ ..++.+.+.+...  +
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   82 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSS-EEDVENLVEQIVEKFG   82 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            468999987 9999999988888899 78887 88776654332    222212 22  3322 1223333332211  3


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|++|.+.|.
T Consensus        83 ~id~vi~~ag~   93 (247)
T PRK05565         83 KIDILVNNAGI   93 (247)
T ss_pred             CCCEEEECCCc
Confidence            68999998874

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=93.22  E-value=0.59  Score=44.45  Aligned_cols=97  Identities=15%  Similarity=0.160  Sum_probs=58.8

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHH
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~  259 (291)
                      ...+++++++||-.|+| .|..++.+++.+ +..+|++++.++++.+.+++    .|...  ++..+.  .++.   ..+
T Consensus       244 ~~l~~~~g~~VLDlgaG-~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~--~~~~---~~~  317 (444)
T PRK14902        244 PALDPKGGDTVLDACAA-PGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA--RKVH---EKF  317 (444)
T ss_pred             HHhCCCCCCEEEEeCCC-CCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc--cccc---chh
Confidence            34567888999888764 244445556554 22389999999998877653    56543  222211  1111   111


Q ss_pred             hcCCccEEEE---ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFE---CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld---~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                       .+.||.|+-   |+|.                         ...+..+++.|++||++
T Consensus       318 -~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l  375 (444)
T PRK14902        318 -AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL  375 (444)
T ss_pred             -cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence             146897764   3321                         13578889999999986

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=93.21  E-value=0.73  Score=40.99  Aligned_cols=46  Identities=37%  Similarity=0.473  Sum_probs=36.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCe-EEEEcCChhhHHHHHHcCC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASR-IIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~-vi~~~~~~~~~~~a~~~g~  239 (291)
                      ..+|+|.|.|.+|......++..|... ++..+.+.+++..+.++|.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv   49 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGV   49 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCc
Confidence            357888899999999999999999833 5677777777777777775

>PRK13984 putative oxidoreductase; Provisional

Probab=93.18  E-value=0.56  Score=46.36  Aligned_cols=78  Identities=23%  Similarity=0.227  Sum_probs=53.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh---------------------hhHHHHHHcCCceEeCCCCCC
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP---------------------EKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~---------------------~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      .+++++|+|+|+|+.|+.++..++.+|. .|++++..+                     ...+.++++|+...++..-..
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  358 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK  358 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC
Confidence            4578889999999999999999999998 788876543                     124566777876555432111


Q ss_pred             chHHHHHHHHhcCCccEEEEccCC
Q 022819          250 EPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +...+.++    ..+|.+|-++|.
T Consensus       359 ~~~~~~~~----~~yD~vilAtGa  378 (604)
T PRK13984        359 DIPLEELR----EKHDAVFLSTGF  378 (604)
T ss_pred             cCCHHHHH----hcCCEEEEEcCc
Confidence            11112222    268999999985

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=93.15  E-value=0.88  Score=41.28  Aligned_cols=83  Identities=20%  Similarity=0.255  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      =.+++|.|+|-|.+|.+.++.++..|. +|++..+.....+.++..|+. +.       ++.+.++     ..|+|+-++
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~~-v~-------sl~Eaak-----~ADVV~llL   79 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGFE-VM-------SVSEAVR-----TAQVVQMLL   79 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCCE-EC-------CHHHHHh-----cCCEEEEeC
Confidence            368899999999999999999999999 887776655555666666652 11       1222222     478888887


Q ss_pred             CChHH---H-HHHHHhhccCc
Q 022819          272 GDTGM---I-TTALQSCCDVR  288 (291)
Q Consensus       272 g~~~~---~-~~~~~~l~~~G  288 (291)
                      ..+..   + ...+..|+++.
T Consensus        80 Pd~~t~~V~~~eil~~MK~Ga  100 (335)
T PRK13403         80 PDEQQAHVYKAEVEENLREGQ  100 (335)
T ss_pred             CChHHHHHHHHHHHhcCCCCC
Confidence            75322   2 23445555554

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.14  E-value=0.2  Score=35.75  Aligned_cols=83  Identities=23%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             EEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce---EeCCCCCCchHHHHHHHHhcCCccEEEEccCC--
Q 022819          199 IFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE---FLNPNDNNEPVQQVIKRITDGGADYSFECIGD--  273 (291)
Q Consensus       199 V~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~---~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~--  273 (291)
                      -+|+| .|..+..+++..+. ++++++.+++.++.+++.....   ++..+.  .++     .+.++.||+|+....-  
T Consensus         2 diG~G-~G~~~~~l~~~~~~-~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~--~~l-----~~~~~sfD~v~~~~~~~~   72 (95)
T PF08241_consen    2 DIGCG-TGRFAAALAKRGGA-SVTGIDISEEMLEQARKRLKNEGVSFRQGDA--EDL-----PFPDNSFDVVFSNSVLHH   72 (95)
T ss_dssp             EET-T-TSHHHHHHHHTTTC-EEEEEES-HHHHHHHHHHTTTSTEEEEESBT--TSS-----SS-TT-EEEEEEESHGGG
T ss_pred             EecCc-CCHHHHHHHhccCC-EEEEEeCCHHHHHHHHhcccccCchheeehH--HhC-----ccccccccccccccceee
Confidence            35665 67888888888444 9999999999999888754322   222221  111     1223478888763221  


Q ss_pred             ----hHHHHHHHHhhccCccc
Q 022819          274 ----TGMITTALQSCCDVRSI  290 (291)
Q Consensus       274 ----~~~~~~~~~~l~~~G~i  290 (291)
                          ...++++.+.|+++|++
T Consensus        73 ~~~~~~~l~e~~rvLk~gG~l   93 (95)
T PF08241_consen   73 LEDPEAALREIYRVLKPGGRL   93 (95)
T ss_dssp             SSHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCHHHHHHHHHHHcCcCeEE
Confidence                35689999999999976

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=93.10  E-value=0.68  Score=41.62  Aligned_cols=39  Identities=21%  Similarity=0.260  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC  231 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~  231 (291)
                      ..++++||+|+ |.+|..++..+...|. +|+++.++.++.
T Consensus         3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~   42 (325)
T PLN02989          3 DGGKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDR   42 (325)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcch
Confidence            35789999987 9999999999999998 887776665543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=93.09  E-value=0.65  Score=39.54  Aligned_cols=96  Identities=16%  Similarity=0.139  Sum_probs=67.5

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-Cc
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GA  264 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~  264 (291)
                      .....+....+|+-+|+| -|.++-.+++......|.++|++++-++.+++...+.....    .    .+..+... ..
T Consensus        23 la~Vp~~~~~~v~DLGCG-pGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~----a----Dl~~w~p~~~~   93 (257)
T COG4106          23 LARVPLERPRRVVDLGCG-PGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEE----A----DLRTWKPEQPT   93 (257)
T ss_pred             HhhCCccccceeeecCCC-CCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceec----c----cHhhcCCCCcc
Confidence            334445677888888998 48888999998865599999999999999987655432221    1    24444444 56


Q ss_pred             cEEEEccC------ChHHHHHHHHhhccCccc
Q 022819          265 DYSFECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      |++|-+.-      .+..+..++..|++||.+
T Consensus        94 dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~L  125 (257)
T COG4106          94 DLLFANAVLQWLPDHPELLPRLVSQLAPGGVL  125 (257)
T ss_pred             chhhhhhhhhhccccHHHHHHHHHhhCCCceE
Confidence            66664322      256789999999999975

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.05  E-value=1.4  Score=40.10  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      ++|.|+|+|.+|...++.+...|. .|+..+.+++..+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~   46 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL   46 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence            679999999999999999999999 999999988765543

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.04  E-value=0.35  Score=43.57  Aligned_cols=85  Identities=13%  Similarity=0.052  Sum_probs=50.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-CCceEeCCCCCCchHHH-HHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVTEFLNPNDNNEPVQQ-VIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-g~~~~i~~~~~~~~~~~-~~~~~~~g~~d~vld~~g~  273 (291)
                      +|+|+|+|++|....-.+...|. .|..+++..++++..++- |.. +..... ...+.. .......+.+|+||-|+-.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~-~~~~~~~~~~~~~~~~~D~viv~vK~   80 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLT-LVEQGQ-ASLYAIPAETADAAEPIHRLLLACKA   80 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeE-EeeCCc-ceeeccCCCCcccccccCEEEEECCH
Confidence            68999999999877777777788 788888887787777653 332 211111 010000 0000011368999998877


Q ss_pred             hHHHHHHHHhh
Q 022819          274 TGMITTALQSC  284 (291)
Q Consensus       274 ~~~~~~~~~~l  284 (291)
                      .+ ...+++.+
T Consensus        81 ~~-~~~al~~l   90 (305)
T PRK05708         81 YD-AEPAVASL   90 (305)
T ss_pred             Hh-HHHHHHHH
Confidence            43 34444443

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=93.04  E-value=0.84  Score=38.81  Aligned_cols=77  Identities=18%  Similarity=0.229  Sum_probs=46.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHH-HHHc---CCce-E--eCCCCCCchHHHHHHHHh--cCC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEK-AKAF---GVTE-F--LNPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~-a~~~---g~~~-~--i~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++||+|+ |.+|..++..+...|+ +++++.+ ++++.+. ..++   +... .  .|..+ ..++.+.+.+..  .+.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   78 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS-FESCKAAVAKVEAELGP   78 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence            46889987 9999999999999999 7887766 4443322 2222   2211 2  23322 223333333322  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|++|.+.|.
T Consensus        79 id~vi~~ag~   88 (242)
T TIGR01829        79 IDVLVNNAGI   88 (242)
T ss_pred             CcEEEECCCC
Confidence            8999999874

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=93.01  E-value=1.2  Score=37.27  Aligned_cols=92  Identities=14%  Similarity=0.180  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHHhcC-Ccc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRITDG-GAD  265 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~~~g-~~d  265 (291)
                      ....+|-+|+|. |..+..+|+......+++++.+++.++.+++    .+...  ++.     .+..+....+... .+|
T Consensus        16 ~~~~ilDiGcG~-G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~-----~d~~~~~~~~~~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGK-GRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLC-----GDANELLDKFFPDGSLS   89 (194)
T ss_pred             CCceEEEeCCCc-cHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEc-----cCHHHHHHhhCCCCcee
Confidence            445677788874 8888888887643489999999987776643    23322  222     2222233333333 688


Q ss_pred             EEEEccCC--------------hHHHHHHHHhhccCccc
Q 022819          266 YSFECIGD--------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~--------------~~~~~~~~~~l~~~G~i  290 (291)
                      .++-....              +..++.+.+.|++||+|
T Consensus        90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l  128 (194)
T TIGR00091        90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVI  128 (194)
T ss_pred             EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEE
Confidence            77654432              35788999999999986

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.00  E-value=0.32  Score=40.29  Aligned_cols=40  Identities=30%  Similarity=0.444  Sum_probs=33.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      +|.|+|+|.+|...++++...|. .|..++.+++.++.+++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~   40 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARK   40 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhh
Confidence            57899999999999999999999 99999999988766543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=93.00  E-value=0.42  Score=43.77  Aligned_cols=92  Identities=18%  Similarity=0.067  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHH--hcCCccEEEE
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRI--TDGGADYSFE  269 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~--~~g~~d~vld  269 (291)
                      .++.+||-+|+|. |..+..+++..+..+++++|.+++-++.+++.....-+....  .+    +.++  ..+.+|+|+.
T Consensus       112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~--gD----~e~lp~~~~sFDvVIs  184 (340)
T PLN02490        112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIE--GD----AEDLPFPTDYADRYVS  184 (340)
T ss_pred             CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEe--cc----HHhCCCCCCceeEEEE
Confidence            4678899998864 667777777765448999999998888877642111010100  11    1111  1236898876


Q ss_pred             ccC------ChHHHHHHHHhhccCccc
Q 022819          270 CIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       270 ~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      +-.      ....++++.+.|++||++
T Consensus       185 ~~~L~~~~d~~~~L~e~~rvLkPGG~L  211 (340)
T PLN02490        185 AGSIEYWPDPQRGIKEAYRVLKIGGKA  211 (340)
T ss_pred             cChhhhCCCHHHHHHHHHHhcCCCcEE
Confidence            321      135678899999999985

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=92.92  E-value=0.63  Score=39.95  Aligned_cols=74  Identities=27%  Similarity=0.324  Sum_probs=47.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-Ee--CCCCCCchHHHHHHHHhc--CCccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FL--NPNDNNEPVQQVIKRITD--GGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~~--g~~d~  266 (291)
                      +++++||.|+ |.+|...+..+...|. +|+.++++.     .+..+... .+  |..+ .+.+.+.+.+...  +.+|+
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~   79 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSD-AAAVAQVCQRLLAETGPLDV   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            4678999987 8999999999888998 899988765     22222211 22  3322 1333333333222  36899


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++.+.|.
T Consensus        80 vi~~ag~   86 (252)
T PRK08220         80 LVNAAGI   86 (252)
T ss_pred             EEECCCc
Confidence            9998875

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=92.88  E-value=1.2  Score=38.66  Aligned_cols=79  Identities=20%  Similarity=0.159  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-hhhHHH----HHHcCCce-E--eCCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCEK----AKAFGVTE-F--LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~-~~~~~~----a~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ |++|..+++.+...|+ +++.+.++ +++.+.    +++.+... .  .|..+ .....+.+.+..  .
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~   83 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTV-ESDVVNLIQTAVKEF   83 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence            5789999987 8999999999999998 77666553 333222    22233322 2  24332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus        84 g~id~lv~~ag~   95 (261)
T PRK08936         84 GTLDVMINNAGI   95 (261)
T ss_pred             CCCCEEEECCCC
Confidence            478999998884

>PRK13243 glyoxylate reductase; Reviewed

Probab=92.80  E-value=0.7  Score=42.23  Aligned_cols=37  Identities=35%  Similarity=0.524  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK  230 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~  230 (291)
                      .+++|.|+|.|.+|...++.++.+|+ +|++.+++.+.
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            57899999999999999999999999 89999876543

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=92.80  E-value=0.59  Score=33.17  Aligned_cols=86  Identities=22%  Similarity=0.191  Sum_probs=51.5

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH---cCC-c--eEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA---FGV-T--EFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~---~g~-~--~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      ++-+|+|. |..+.++++... .++++++.+++..+.+++   ... .  .++.     .++.+... ...+.+|+++..
T Consensus         2 ildig~G~-G~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~d~i~~~   73 (107)
T cd02440           2 VLDLGCGT-GALALALASGPG-ARVTGVDISPVALELARKAAAALLADNVEVLK-----GDAEELPP-EADESFDVIISD   73 (107)
T ss_pred             eEEEcCCc-cHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHhcccccceEEEE-----cChhhhcc-ccCCceEEEEEc
Confidence            55667764 666667776334 499999999888777762   111 1  1221     12222211 122478988875


Q ss_pred             cCC-------hHHHHHHHHhhccCccc
Q 022819          271 IGD-------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       271 ~g~-------~~~~~~~~~~l~~~G~i  290 (291)
                      ...       ...++...+.++++|.+
T Consensus        74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~  100 (107)
T cd02440          74 PPLHHLVEDLARFLEEARRLLKPGGVL  100 (107)
T ss_pred             cceeehhhHHHHHHHHHHHHcCCCCEE
Confidence            442       45577788889998875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.80  E-value=1.2  Score=38.69  Aligned_cols=79  Identities=22%  Similarity=0.360  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh--hhHHH-HHHcCCc-eE--eCCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNP--EKCEK-AKAFGVT-EF--LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~--~~~~~-a~~~g~~-~~--i~~~~~~~~~~~~~~~~~--~  261 (291)
                      ++++++|.|+   +++|.++++.+...|+ +|+.++++.  +..+. .++++.. ..  .|..+ ..+..+.+.+..  .
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~   83 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTN-EEHLASLADRVREHV   83 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCC-HHHHHHHHHHHHHHc
Confidence            4678999985   6999999998888999 888887653  33333 3334321 12  23332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++++.|.
T Consensus        84 g~iD~li~nAG~   95 (256)
T PRK07889         84 DGLDGVVHSIGF   95 (256)
T ss_pred             CCCcEEEEcccc
Confidence            479999998875

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=92.78  E-value=0.89  Score=40.86  Aligned_cols=38  Identities=16%  Similarity=0.161  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC  231 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~  231 (291)
                      .+++|||.|+ |.+|..++..+...|. +|+++.++.++.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~   42 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTDR   42 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcch
Confidence            4689999987 9999999998888898 888776765543

>PRK03612 spermidine synthase; Provisional

Probab=92.77  E-value=0.8  Score=44.52  Aligned_cols=97  Identities=15%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC-Cce----EeCCCC---CCchHHHHHHHHhcCC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG-VTE----FLNPND---NNEPVQQVIKRITDGG  263 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g-~~~----~i~~~~---~~~~~~~~~~~~~~g~  263 (291)
                      .++++||++|+| -|..+..+++....+++.+++.+++-.+.+++.. ...    ..+...   ...|..+.+++. .+.
T Consensus       296 ~~~~rVL~IG~G-~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~  373 (521)
T PRK03612        296 ARPRRVLVLGGG-DGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEK  373 (521)
T ss_pred             CCCCeEEEEcCC-ccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCC
Confidence            567889999875 4555566666544369999999999999988721 000    000000   012333444432 348


Q ss_pred             ccEEEEccCC-----------hHHHHHHHHhhccCccc
Q 022819          264 ADYSFECIGD-----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g~-----------~~~~~~~~~~l~~~G~i  290 (291)
                      +|+|+-....           .+.++.+.+.|+++|.+
T Consensus       374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~l  411 (521)
T PRK03612        374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLL  411 (521)
T ss_pred             CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEE
Confidence            9977654332           13577889999999975

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.77  E-value=1.3  Score=37.91  Aligned_cols=79  Identities=22%  Similarity=0.233  Sum_probs=46.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC-C
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG-G  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g-~  263 (291)
                      .++++||+|+ |.+|..++..+...|+ +|+.+.+ ++++.+.+ .+++... ++  |..+ ..++.+.+.+..  .+ +
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEALADELGDRAIALQADVTD-REQVQAMFATATEHFGKP   81 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHhCCC
Confidence            3578999987 9999999998888999 7766543 44443333 3343221 22  3322 123333333321  13 4


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        82 id~li~~ag~   91 (253)
T PRK08642         82 ITTVVNNALA   91 (253)
T ss_pred             CeEEEECCCc
Confidence            9999998763

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=92.77  E-value=0.62  Score=47.20  Aligned_cols=45  Identities=36%  Similarity=0.601  Sum_probs=39.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      ++|.|+|.|.+|.+.++.++..|. .+|+++++++++.+.++++|+
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~   49 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGV   49 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCC
Confidence            678999999999999999999883 379999999999888888775

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=92.72  E-value=0.71  Score=41.77  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      .+++|.|+|.|.+|...++.++.+|+ +|+++++..+
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~  170 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRK  170 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            57899999999999999999999999 9999976543

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=92.69  E-value=0.53  Score=44.02  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ...+|+|+|+|++|..++..+..+|..++..+|.+
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            34679999999999999999999999888888753

>PLN02256 arogenate dehydrogenase

Probab=92.69  E-value=1.7  Score=39.24  Aligned_cols=53  Identities=19%  Similarity=0.281  Sum_probs=40.2

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +.+..+-....+|.|+|.|.+|...+..++..|. .|+++++++. .+.++++|+
T Consensus        27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv   79 (304)
T PLN02256         27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGV   79 (304)
T ss_pred             HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCC
Confidence            3444444566789999999999999998888887 8888988764 355666665

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.69  E-value=0.75  Score=41.03  Aligned_cols=39  Identities=21%  Similarity=0.359  Sum_probs=34.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      .+|.|+|+|.+|...++.+...|. .|+..+.+++.++.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~   44 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAG   44 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH
Confidence            478899999999999988888899 999999999987763

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=92.68  E-value=1.1  Score=39.93  Aligned_cols=43  Identities=28%  Similarity=0.438  Sum_probs=36.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~   46 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGA   46 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            68889999999988888888898 88999999988887776654

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=92.67  E-value=1.1  Score=38.71  Aligned_cols=93  Identities=17%  Similarity=0.296  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh------hhHH--HHHHcCCceE---------------eCCCCCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP------EKCE--KAKAFGVTEF---------------LNPNDNN  249 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~------~~~~--~a~~~g~~~~---------------i~~~~~~  249 (291)
                      +...|+|+|.|++|..++..+-..|+.++..+|-++      .|+-  +....|-..+               +...+ .
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~-~  107 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN-D  107 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH-h
Confidence            457799999999999999999999998888876533      1111  1111221111               11110 0


Q ss_pred             chHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhcc
Q 022819          250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD  286 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~  286 (291)
                      .-..+.+.++...++|.|+|++..-..=..++..+.+
T Consensus       108 f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~  144 (263)
T COG1179         108 FITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRR  144 (263)
T ss_pred             hhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHH
Confidence            1123445566666999999998874443344444443

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.66  E-value=1  Score=38.22  Aligned_cols=78  Identities=18%  Similarity=0.298  Sum_probs=45.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHhc--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~~--  261 (291)
                      +.+++||+|+ |.+|..++..+...|. +++.+.+ +++..+.+    +..+... ++  |..+ ..++.+.+.+...  
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~   82 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTD-KAALEAAVAAAVERF   82 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCC-HHHHHHHHHHHHHHc
Confidence            3468999987 9999999999999999 6655444 34333322    2223221 22  3322 2333333333221  


Q ss_pred             CCccEEEEccC
Q 022819          262 GGADYSFECIG  272 (291)
Q Consensus       262 g~~d~vld~~g  272 (291)
                      +.+|+++.+.|
T Consensus        83 ~~id~vi~~ag   93 (249)
T PRK12825         83 GRIDILVNNAG   93 (249)
T ss_pred             CCCCEEEECCc
Confidence            37899999887

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=92.65  E-value=0.28  Score=42.48  Aligned_cols=97  Identities=19%  Similarity=0.263  Sum_probs=56.9

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHc----CCce--EeCCCCCCchHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----GVTE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~----g~~~--~i~~~~~~~~~~~~~~~  258 (291)
                      .+....+++++||-+|+| .|..+..+++..+. .+|+++|.+++-++.+++.    +...  .+.-+.  .++     .
T Consensus        40 ~~~~~~~~g~~vLDv~~G-tG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da--~~l-----p  111 (233)
T PF01209_consen   40 IKLLGLRPGDRVLDVACG-TGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA--EDL-----P  111 (233)
T ss_dssp             HHHHT--S--EEEEET-T-TSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT--TB-------
T ss_pred             HhccCCCCCCEEEEeCCC-hHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH--HHh-----c
Confidence            344567889999999876 56777788887653 3899999999988888642    2211  121111  111     1


Q ss_pred             HhcCCccEEEEccCC------hHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIGD------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g~------~~~~~~~~~~l~~~G~i  290 (291)
                      +.+..||+|.-+.|-      ...+.+..+.|+|||++
T Consensus       112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l  149 (233)
T PF01209_consen  112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRL  149 (233)
T ss_dssp             S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEE
T ss_pred             CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEE
Confidence            112368988876553      45688999999999986

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.64  E-value=0.74  Score=43.66  Aligned_cols=71  Identities=27%  Similarity=0.377  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-hhH----HHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP-EKC----EKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~----~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      .+++++|+|+|.+|+.++..+...|+ .|++++.++ +..    +.+++.|........   .+   ..    .+.+|+|
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~---~~---~~----~~~~d~v   72 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIELVLGEY---PE---EF----LEGVDLV   72 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCEEEeCCc---ch---hH----hhcCCEE
Confidence            46889999999999999999999999 899998764 222    333455654322211   11   11    1368999


Q ss_pred             EEccCCh
Q 022819          268 FECIGDT  274 (291)
Q Consensus       268 ld~~g~~  274 (291)
                      +.+.|.+
T Consensus        73 v~~~g~~   79 (450)
T PRK14106         73 VVSPGVP   79 (450)
T ss_pred             EECCCCC
Confidence            9988863

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=92.64  E-value=0.59  Score=40.04  Aligned_cols=94  Identities=19%  Similarity=0.224  Sum_probs=58.1

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhcCCc
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      ....++.+||-+|+|. |..+..+++ .++ ++++++.+++..+.+++.    +...  +...  .+..+.. ....+.+
T Consensus        44 ~~~~~~~~vLdiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~~-~~~~~~f  115 (233)
T PRK05134         44 AGGLFGKRVLDVGCGG-GILSESMAR-LGA-DVTGIDASEENIEVARLHALESGLKI--DYRQ--TTAEELA-AEHPGQF  115 (233)
T ss_pred             ccCCCCCeEEEeCCCC-CHHHHHHHH-cCC-eEEEEcCCHHHHHHHHHHHHHcCCce--EEEe--cCHHHhh-hhcCCCc
Confidence            3455788899998863 666666666 477 899999998887777642    2211  1111  1222221 1123489


Q ss_pred             cEEEE-----ccCC-hHHHHHHHHhhccCccc
Q 022819          265 DYSFE-----CIGD-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld-----~~g~-~~~~~~~~~~l~~~G~i  290 (291)
                      |+|+-     .... ...++.+.+.|+++|++
T Consensus       116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l  147 (233)
T PRK05134        116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLV  147 (233)
T ss_pred             cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEE
Confidence            98854     3333 34578888999999975

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.62  E-value=0.41  Score=42.65  Aligned_cols=83  Identities=14%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC-Cc--hHHHHHHHHhcCCccEEEEccC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN-NE--PVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~-~~--~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      +|.|+|+|.+|...+..+...|. .|..+++++++.+.+++.|...  + +.. ..  .......+.  ..+|+||-++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~-~~~~~~~~~~~~~~~~~--~~~d~vila~k   75 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--E-DGEITVPVLAADDPAEL--GPQDLVILAVK   75 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--c-CCceeecccCCCChhHc--CCCCEEEEecc
Confidence            58899999999998888888898 8888888788877777655422  1 000 00  000001111  36899998888


Q ss_pred             ChHHHHHHHHhhc
Q 022819          273 DTGMITTALQSCC  285 (291)
Q Consensus       273 ~~~~~~~~~~~l~  285 (291)
                      .. .+..+++.++
T Consensus        76 ~~-~~~~~~~~l~   87 (304)
T PRK06522         76 AY-QLPAALPSLA   87 (304)
T ss_pred             cc-cHHHHHHHHh
Confidence            63 2344444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	291
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		7e-76
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		2e-72
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		9e-62
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		4e-60
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		5e-60
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		5e-60
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		3e-59
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		1e-55
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-55
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		2e-55
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		9e-55
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		9e-55
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		9e-55
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		9e-55
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-54
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		1e-54
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		1e-54
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		2e-54
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-54
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		2e-54
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-54
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-54
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		3e-54
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		3e-54
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		5e-54
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		1e-53
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		2e-53
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		3e-53
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		3e-53
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		6e-53
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		3e-51
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		6e-27
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		2e-15
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		2e-14
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-12
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		2e-12
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		2e-12
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		2e-12
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		4e-12
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		7e-12
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		8e-12
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		8e-12
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		8e-12
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		9e-12
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		1e-11
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		1e-11
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		2e-11
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		7e-11
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		7e-11
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		7e-11
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		2e-10
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		5e-10
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		2e-09
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		2e-09
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		4e-08
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		5e-08
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		9e-08
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-07
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		3e-07
3fpc_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		7e-07
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		9e-07
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		2e-06
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		2e-06
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		3e-06
3ip1_A	404	Structure Of Putative Alcohol Dehydrogenase (Tm_042		4e-06
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		6e-06
2dph_A	398	Crystal Structure Of Formaldehyde Dismutase Length		7e-06
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		1e-05
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		1e-05
1kol_A	398	Crystal Structure Of Formaldehyde Dehydrogenase Len		2e-05
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		3e-05
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		7e-05
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		9e-05
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		1e-04
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		8e-04

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  280 bits (716), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 138/287 (48%), Positives = 188/287 (65%), Gaps = 4/287 (1%)
Query: 2   STSIKQPQVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAW---E 58
           S+S  Q QVITCKAAVAW   +                +R+KV+ T+LC +D   W   +
Sbjct: 16  SSSATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKD 75
Query: 59  TQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTC-EVLG 117
            + +FP + GHEA+GIVESVG GVTE   G+HV+  +  EC+ C+ CKS K+N C +V  
Sbjct: 76  PEGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRA 135
Query: 118 LERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXX 177
               GVM +D+++RFSI GKP+YH+   S+FS+YTVVH     K+  +APLEK+      
Sbjct: 136 ATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCG 195
Query: 178 XXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 237
                   WN A +  GS V +FGLGTVGL+VA+GAKA GASRIIG+D + +K ++AK F
Sbjct: 196 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNF 255
Query: 238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           GVTEF+NP ++ +P+QQVI  +TDGG DYSFECIG+  ++ +AL+ C
Sbjct: 256 GVTEFINPKEHEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECC 302

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  268 bits (685), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/282 (47%), Positives = 181/282 (64%), Gaps = 4/282 (1%)
Query: 7   QPQVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAW---ETQAIF 63
           Q QVITCKAAVA+   +                +RIK++ T+LC +D   W   + + +F
Sbjct: 3   QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLF 62
Query: 64  PRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTC-EVLGLERRG 122
           P I GHEA+GIVESVG GVTE   G+HV+  +  EC+ C+ CKS K+N C +V      G
Sbjct: 63  PCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVG 122
Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXX 182
           +M +D+++RFS+ GKP+YH+   S+FS+YTVVH     K+   APL+K+           
Sbjct: 123 IMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGL 182
Query: 183 XXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 242
              WN A +  GS V IFGLGTVGL+VA+GAK  GASRIIG+D + +K E AK FGV EF
Sbjct: 183 GAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEF 242
Query: 243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           +NP D+++P+Q+VI  +TDGG DYSFECIG+  ++  AL+ C
Sbjct: 243 VNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECC 284

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  233 bits (594), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 118/279 (42%), Positives = 166/279 (59%), Gaps = 3/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAW---ETQAIFPR 65
           +VI CKAAVAW A +                IRIK++ T +C +D+      + +  FP 
Sbjct: 5   KVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPV 64
Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           + GHE +GIVESVGPGVTEF  GE V+ +FI +C  CR C+S K+N C          + 
Sbjct: 65  VLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
           S ++TRF+ KG+ V  +   S+FS+YTVV+     K+   APL+ +              
Sbjct: 125 SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAA 184
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            N A +  GST  +FGLG VGL+   G  + GA RII VD NP+K EKAK FG T+F+NP
Sbjct: 185 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP 244
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           ND++EP+ QV+ ++T+GG D+S EC+G+ G++  AL+SC
Sbjct: 245 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESC 283

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  228 bits (580), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/279 (41%), Positives = 167/279 (59%), Gaps = 3/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPR 65
           +VI CKAAVAW AG+                +RIK++ T++C +D   ++  + +  FP 
Sbjct: 4   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I GHE +GIVESVG GVT+   G+ V+ ++I +C  C+ C + K+N C+ + + +   + 
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 123
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ KGK + HY   S+FSEYTVV      K+  +APL+K+              
Sbjct: 124 PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            N A +  GS   +FGLG VGL+V  G K  GASRIIGVD N +K  +AK FG TE +NP
Sbjct: 184 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D ++P+Q+V+  +TDGG DYSFECIG+  ++  AL++C
Sbjct: 244 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC 282

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  227 bits (579), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/279 (41%), Positives = 167/279 (59%), Gaps = 3/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPR 65
           +VI CKAAVAW AG+                +RIK++ T++C +D   ++  + +  FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I GHE +GIVESVG GVT+   G+ V+ ++I +C  C+ C + K+N C+ + + +   + 
Sbjct: 63  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 122
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ KGK + HY   S+FSEYTVV      K+  +APL+K+              
Sbjct: 123 PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAA 182
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            N A +  GS   +FGLG VGL+V  G K  GASRIIGVD N +K  +AK FG TE +NP
Sbjct: 183 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP 242
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D ++P+Q+V+  +TDGG DYSFECIG+  ++  AL++C
Sbjct: 243 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC 281

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  227 bits (579), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/279 (41%), Positives = 167/279 (59%), Gaps = 3/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPR 65
           +VI CKAAVAW AG+                +RIK++ T++C +D   ++  + +  FP 
Sbjct: 4   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I GHE +GIVESVG GVT+   G+ V+ ++I +C  C+ C + K+N C+ + + +   + 
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 123
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ KGK + HY   S+FSEYTVV      K+  +APL+K+              
Sbjct: 124 PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            N A +  GS   +FGLG VGL+V  G K  GASRIIGVD N +K  +AK FG TE +NP
Sbjct: 184 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D ++P+Q+V+  +TDGG DYSFECIG+  ++  AL++C
Sbjct: 244 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC 282

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  224 bits (572), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 166/279 (59%), Gaps = 3/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPR 65
           +VI CKAAVAW AG+                +RIK++ T++C +D   ++  + +  FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I GH  +GIVESVG GVT+   G+ V+ ++I +C  C+ C + K+N C+ + + +   + 
Sbjct: 63  ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 122
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ KGK + HY   S+FSEYTVV      K+  +APL+K+              
Sbjct: 123 PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAA 182
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            N A +  GS   +FGLG VGL+V  G K  GASRIIGVD N +K  +AK FG TE +NP
Sbjct: 183 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP 242
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D ++P+Q+V+  +TDGG DYSFECIG+  ++  AL++C
Sbjct: 243 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC 281

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/279 (41%), Positives = 156/279 (55%), Gaps = 4/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V   +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL-ERRGVMH 125
            GHEA+GIVESVG GVT    G+ V+ +F  +C  CR CK+ +SN C    L   RG + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D   RF+  GKP++H+  VS+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA ++ GST  +FGLG VGLSV  G KA GA+RII VD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C
Sbjct: 244 QDYKKPIQEVLKEMTDGGVDFSFEVIGQLDTMMASLLCC 282

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  212 bits (540), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/279 (41%), Positives = 156/279 (55%), Gaps = 4/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V   +CR+D  + +       P I
Sbjct: 5   KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL-ERRGVMH 125
            GHEA+GIVESVG GVT    G+ V+ +F  +C  CR CK+ +SN C    L   RG + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D   RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            NVA ++ GST  +FGLG VGLS   G KA GA+RII VD N +K  KAK  G TE +NP
Sbjct: 184 VNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C
Sbjct: 244 QDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCC 282

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/279 (41%), Positives = 156/279 (55%), Gaps = 4/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V   +CR+D  + +       P I
Sbjct: 5   KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL-ERRGVMH 125
            GHEA+GIVESVG GVT    G+ V+ +F  +C  CR CK+ +SN C    L   RG + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D   RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            NVA ++ GST  +FGLG VGLS   G KA GA+RII VD N +K  KAK  G TE +NP
Sbjct: 184 VNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C
Sbjct: 244 QDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCC 282

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  210 bits (534), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 118/280 (42%), Positives = 160/280 (57%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ +F  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  210 bits (534), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 118/280 (42%), Positives = 160/280 (57%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ +F  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  210 bits (534), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 118/280 (42%), Positives = 160/280 (57%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ +F  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  210 bits (534), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 118/280 (42%), Positives = 160/280 (57%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ +F  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 155/279 (55%), Gaps = 4/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V   +C +D  + +       P I
Sbjct: 5   KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTDDHVVSGNLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL-ERRGVMH 125
            GHEA+GIVESVG GVT    G+ V+ +F  +C  CR CK+ +SN C    L   RG + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D   RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            NVA ++ GST  +FGLG VGLS   G KA GA+RII VD N +K  KAK  G TE +NP
Sbjct: 184 VNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C
Sbjct: 244 QDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCC 282

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 118/280 (42%), Positives = 160/280 (57%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ +F  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/281 (40%), Positives = 162/281 (57%), Gaps = 7/281 (2%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQ---AIFPR 65
           +VI CKAA+AW AG+                +RI+++ TSLC +D T  +++     FP 
Sbjct: 7   KVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPV 66
Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTC-EVLGLERRGV- 123
           I GHEA+GIVES+GPGVT    G+ V+ ++   C+ C+ C S  +N C ++  L+     
Sbjct: 67  IVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASD 126
Query: 124 --MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXX 181
             +  D+ +RF+ KGKPVYH+   S+FS+YTVV      K+   A LE++          
Sbjct: 127 QQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTG 186
Query: 182 XXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
                N A ++ GST  +FGLG VGLS   G KA GASRIIG+D N EK  KAKA G T+
Sbjct: 187 YGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATD 246
Query: 242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQ 282
            LNP D ++P+Q+VI  +T GG D++ +C G +  +  AL 
Sbjct: 247 CLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALD 287

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/280 (41%), Positives = 160/280 (57%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ +F  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N ++  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 155/279 (55%), Gaps = 4/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V   +C +D  + +       P I
Sbjct: 5   KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTDDHVVSGNLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL-ERRGVMH 125
            GHEA+GIVESVG GVT    G+ V+ +F  +C  CR CK+ +SN C    L   RG + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D   RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            NVA ++ GST  +FGLG VGLS   G KA GA+RII VD N +K  KAK  G TE +NP
Sbjct: 184 VNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C
Sbjct: 244 QDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCC 282

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 156/282 (55%), Gaps = 6/282 (2%)
Query: 7   QPQVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQ--AIFP 64
           Q +VI CKAA+AW  G                 +RI+V+ T +C +DI A + +  A+FP
Sbjct: 3   QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDINATDPKKKALFP 62
Query: 65  RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV- 123
            + GHE +GIVESVGPGVT F  G+ V+  F  +CK C+ C S  +N C  L   +    
Sbjct: 63  VVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTI 122
Query: 124 ---MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXX 180
              +  D+ +RF+ KG+ +YH+  VSSFS+YTVV      +V   A LE++         
Sbjct: 123 DQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSS 182
Query: 181 XXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
                 N A ++ GST  +FGLG VGLS   G K  GASRII +D N EK  KAKA G T
Sbjct: 183 GYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 242
Query: 241 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQ 282
           + LNP + ++PVQ VI  +T GG DYS +C G    +  A+ 
Sbjct: 243 DCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVD 284

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 158/279 (56%), Gaps = 4/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V   +CRSD  + +    A  P I
Sbjct: 5   KVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHEA+GIVES+G GVT    G+ V+ +FI +C  C  CK  + N C       RG M  
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLKNLSMPRGTMQ- 123
Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXW 186
           D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+               
Sbjct: 124 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAV 183
Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
            VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP 
Sbjct: 184 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 243
Query: 247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
           D  +P+Q+V+  +++GG D+SFE IG    +  AL SCC
Sbjct: 244 DYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAAL-SCC 281

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 158/279 (56%), Gaps = 4/279 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V   +CRSD  + +    A  P I
Sbjct: 5   KVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHEA+GIVES+G GVT    G+ V+ +FI +C  C  CK  + N C       RG M  
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLKNLSMPRGTMQ- 123
Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXW 186
           D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+               
Sbjct: 124 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAV 183
Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
            VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP 
Sbjct: 184 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 243
Query: 247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
           D  +P+Q+V+  +++GG D+SFE IG    +  AL SCC
Sbjct: 244 DYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAAL-SCC 281

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/280 (41%), Positives = 159/280 (56%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ +F  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG  GLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 156/282 (55%), Gaps = 6/282 (2%)
Query: 7   QPQVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQ--AIFP 64
           Q +VI CKAA+AW  G                 +RI+V+ T +C +DI A + +  A+FP
Sbjct: 3   QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFP 62
Query: 65  RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV- 123
            + GHE +GIVESVGPGVT F  G+ V+  F  +CK C+ C S  +N C  L   +    
Sbjct: 63  VVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTI 122
Query: 124 ---MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXX 180
              +  D+ +RF+ KG+ +YH+  VSSFS+YTVV      +V   A LE++         
Sbjct: 123 DQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSS 182
Query: 181 XXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
                 N A ++ GST  +FGLG VGLS   G K  GASRII +D N EK  KAKA G T
Sbjct: 183 GYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 242
Query: 241 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQ 282
           + LNP + ++PVQ VI  +T GG DYS +C G    +  A+ 
Sbjct: 243 DCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVD 284

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  207 bits (527), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 117/280 (41%), Positives = 160/280 (57%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ ++  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/280 (41%), Positives = 159/280 (56%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ +   +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/280 (41%), Positives = 159/280 (56%), Gaps = 5/280 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V T +CRSD  + +       P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ ++  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+              
Sbjct: 125 -DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG  GLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            D  +P+Q+V+  +++GG D+SFE IG    + TAL SCC
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL-SCC 282

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 154/278 (55%), Gaps = 3/278 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQAI--FPRI 66
           +VI CKAAV W   Q                +RIK++ T +CR+D    +   +  FP I
Sbjct: 5   KVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSKFPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHEA+GIVES+G GVT    G+ V+ +F+ +C+ C  C++   N C    +  RGV+ +
Sbjct: 65  VGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRGVL-A 123
Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXW 186
           D  TRF+ KGKPV+H+   S+F+EYTVV      K+   AP EK+               
Sbjct: 124 DGTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAV 183
Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
               +  GST V+FGLG VGLSV  G K+ GASRIIG+D N +K EKA A G TE ++P 
Sbjct: 184 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK 243
Query: 247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           D+ +P+ +V+  +T     Y+FE IG    +  AL SC
Sbjct: 244 DSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASC 281

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 154/278 (55%), Gaps = 3/278 (1%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQAI--FPRI 66
           +VI CKAAV W   Q                +RIK++ T +CR+D    +   +  FP I
Sbjct: 5   KVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSKFPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHEA+GIVES+G GVT    G+ V+ +F+ +C+ C  C++   N C    +  RGV+ +
Sbjct: 65  VGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRGVL-A 123
Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXW 186
           D  TRF+ KGKPV+H+   S+F+EYTVV      K+   AP EK+               
Sbjct: 124 DGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAV 183
Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
               +  GST V+FGLG VGLSV  G K+ GASRIIG+D N +K EKA A G TE ++P 
Sbjct: 184 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK 243
Query: 247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           D+ +P+ +V+  +T     Y+FE IG    +  AL SC
Sbjct: 244 DSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASC 281

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  204 bits (518), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 110/278 (39%), Positives = 153/278 (55%), Gaps = 2/278 (0%)
Query: 9   QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD--ITAWETQAIFPRI 66
           +VI CKAAV W   +                +RIK+V   +C +D  + +       P I
Sbjct: 5   KVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPLPVI 64
Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHEA+GIVESVG GVT    G+ V+ + I +C  CR CK+ +SN C    +        
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTLQ 124
Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXW 186
           D  +RF+ + KP++H+  +S+FS+YTVV      K+ + +PLEK+               
Sbjct: 125 DGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
           NVA ++ GST  +FGLG VGLS   G KA GA+RII VD N +K  KAK  G TE +NP 
Sbjct: 185 NVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQ 244
Query: 247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C
Sbjct: 245 DYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCC 282

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 111/275 (40%), Positives = 152/275 (55%), Gaps = 3/275 (1%)
Query: 11  ITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWE--TQAIFPRIFG 68
           ITCKAAVAW   +                +RIK++ + +C SD +  +    + FP I G
Sbjct: 8   ITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILG 67
Query: 69  HEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 128
           HEA G+VES+G GVT    G+ V+ +F+ +C +CR CKS  SN CE   +  +  + +D 
Sbjct: 68  HEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADM 127
Query: 129 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNV 188
            +RF+ +GKP+Y+    S+F+EYTVV      K+   APLE                 N 
Sbjct: 128 TSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLESCLIGCGFATGYGAAV-NT 186
Query: 189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 248
           A ++ GST  +FGLG VG S   G KA GASRIIGV T+ +K  KA   G TE LNP D 
Sbjct: 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDY 246
Query: 249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQS 283
           ++P+ +VI   T+GG DY+ EC G    +  ALQS
Sbjct: 247 DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQS 281

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 116/240 (48%), Gaps = 13/240 (5%)
Query: 40  IRIKVVCTSLCRSDITAWETQ--AIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIG 97
           + +KVV T +C +D+   + +     P + GHE SGI+E++GP VTE   G+HV+  + G
Sbjct: 34  VLVKVVATGMCHTDLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-G 92
Query: 98  ECKTCRQCKSDKSNTC-EVLGLERRGVMHSDQQTRFSI----KGKPVYHYCAVSSFSEYT 152
            C  C QC +     C E  G   R    +D +   ++    +G    H+ A SSF+ Y 
Sbjct: 93  YCGKCTQCNTGNPAYCSEFFG---RNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYA 149
Query: 153 VVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQG 212
           +      VKV+   P+E +               N   ++  S+ V +G G VGLS    
Sbjct: 150 LSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLA 209
Query: 213 AKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 272
           AK  GAS II VD    + E AK  G T  +N +   +PV   IK ITDGG +++ E  G
Sbjct: 210 AKVCGASIIIAVDIVESRLELAKQLGATHVIN-SKTQDPV-AAIKEITDGGVNFALESTG 267

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 38/254 (14%)
Query: 40  IRIKVVCTSLCRSDITAWETQAIF------PRIFGHEASGIVESVGPGVTEFNEGEHVLT 93
           I ++V   S+C +D+  W+  A        P + GHE SG+VE+VGPGV     G+HV  
Sbjct: 28  ILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSL 87
Query: 94  VFIGECKTCRQCKSDKSNTC---EVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 150
                C  C  C++   + C   ++LG++R G                         F+E
Sbjct: 88  ESHIVCHACPACRTGNYHVCLNTQILGVDRDG------------------------GFAE 123
Query: 151 YTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVA 210
           Y VV +  A       P E +              +  + +S G +V+I G G +GL  A
Sbjct: 124 YVVVPAENAWVNPKDLPFE-VAAILEPFGNAVHTVYAGSGVS-GKSVLITGAGPIGLMAA 181
Query: 211 QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 270
              +A GA  I+  D NP +   A+ +     +NP +  E + +V++R+T  G +   E 
Sbjct: 182 MVVRASGAGPILVSDPNPYRLAFARPYA-DRLVNPLE--EDLLEVVRRVTGSGVEVLLEF 238
Query: 271 IGDTGMITTALQSC 284
            G+   I   L + 
Sbjct: 239 SGNEAAIHQGLMAL 252

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 31/224 (13%)
Query: 40  IRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIG 97
           +R+K+  + LC SD+          +P   GHE SG +++VG GV + + G+ V  V + 
Sbjct: 28  VRVKIASSGLCGSDLPRIFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLL 87
Query: 98  ECKTCRQCKSDKSNTC---EVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 154
            C TC +C     + C   + +G  R G                         F+EY VV
Sbjct: 88  PCFTCPECLKGFYSQCAKYDFIGSRRDG------------------------GFAEYIVV 123
Query: 155 HSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAK 214
                  + +  P+E                +++A   +   V+I G GT+GL   Q A 
Sbjct: 124 KRKNVFALPTDMPIED--GAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAV 181
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR 258
           A GA  +  +D + EK   AK+FG  +  N ++ + P  Q + R
Sbjct: 182 ALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLR 225

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 107/249 (42%), Gaps = 31/249 (12%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE 98
           ++ +  S C SDI      A+  R   I GHEA G V  VG  V +F  G+ V+      
Sbjct: 29  VRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIV----- 83
Query: 99  CKTCRQCKSDKSNTCEV-LGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 157
                 C +    + EV  G +        Q +   + G    ++     F EY   H  
Sbjct: 84  -----PCTTPDWRSLEVQAGFQ--------QHSNGMLAGWKFSNFKD-GVFGEY--FHVN 127
Query: 158 CAVKVSSIAPLEKIXXXXXXXXXXXXXXWN---VADISKGSTVVIFGLGTVGLSVAQGAK 214
            A    +I P +                ++   +ADI  G+TV + G+G VGL    GAK
Sbjct: 128 DADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAK 187
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD 273
            RGA RII V + P   + AK +G T+ +N  D   P++  I  +T+G G D +    G+
Sbjct: 188 LRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDG--PIESQIMNLTEGKGVDAAIIAGGN 245
Query: 274 TGMITTALQ 282
             ++ TA++
Sbjct: 246 ADIMATAVK 254

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 97/231 (41%), Gaps = 29/231 (12%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE 98
           ++ +  S C SDI      A+  R   I GHEA G V  VG  V +F  G+ V+      
Sbjct: 29  VRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIV----- 83
Query: 99  CKTCRQCKSDKSNTCEV-LGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 157
                 C +    + EV  G +        Q +   + G    ++     F EY   H  
Sbjct: 84  -----PCTTPDWRSLEVQAGFQ--------QHSNGMLAGWKFSNFKD-GVFGEY--FHVN 127
Query: 158 CAVKVSSIAPLEKIXXXXXXXXXXXXXXWN---VADISKGSTVVIFGLGTVGLSVAQGAK 214
            A    +I P +                ++   +ADI  GS+VV+ G+G VGL    GAK
Sbjct: 128 DADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAK 187
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGAD 265
            RGA RIIGV + P   E AK +G T+ LN   N   V QV+K     G D
Sbjct: 188 LRGAGRIIGVGSRPICVEAAKFYGATDILN-YKNGHIVDQVMKLTNGKGVD 237

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 82/211 (38%), Gaps = 28/211 (13%)
Query: 40  IRIKVVCTSLCRSDITA----WETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHV-LTV 94
           + +++    +C +D+ A    W  +   P I GHE  GIVE VGPGVT    G+ V +  
Sbjct: 28  VLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPW 87
Query: 95  FIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 154
               C  C  C S +   CE             +   +S+ G           ++EY   
Sbjct: 88  LYSACGHCDYCLSGQETLCE-----------HQKNAGYSVDG----------GYAEYCRA 126
Query: 155 HSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAK 214
            +   VK+      E+                 V     G  V I+G+G +G    Q AK
Sbjct: 127 AADYVVKIPDNLSFEE-AAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAK 185
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
           A G + ++ VD   EK E AK  G    +NP
Sbjct: 186 AMGLN-VVAVDIGDEKLELAKELGADLVVNP 215

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 97/230 (42%), Gaps = 27/230 (11%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE 98
           ++ +  S C SDI      A+  R   I GHEA G V  VG  V +F  G+ V+      
Sbjct: 29  VRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIV----- 83
Query: 99  CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC 158
                 C +    + EV    + G     Q +   + G    ++     F EY   H   
Sbjct: 84  -----PCTTPDWRSLEV----QAGF---PQHSNGMLAGWKFSNFKD-GVFGEY--FHVND 128
Query: 159 AVKVSSIAPLEKIXXXXXXXXXXXXXXWN---VADISKGSTVVIFGLGTVGLSVAQGAKA 215
           A    +I P +                ++   +ADI  GS+VV+ G+G VGL    GAK 
Sbjct: 129 ADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAKL 188
Query: 216 RGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGAD 265
           RGA RIIGV + P   E AK +G T+ LN   N   V QV+K     G D
Sbjct: 189 RGAGRIIGVGSRPICVEAAKFYGATDILN-YKNGHIVDQVMKLTNGKGVD 237

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 81/211 (38%), Gaps = 28/211 (13%)
Query: 40  IRIKVVCTSLCRSDITA----WETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHV-LTV 94
           + +++    +C +D+ A    W  +   P I GHE  GIVE VGPGVT    G+ V +  
Sbjct: 28  VLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPW 87
Query: 95  FIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 154
               C  C  C S +   CE             +   +S+ G           ++EY   
Sbjct: 88  LYSACGHCDYCLSGQETLCE-----------HQKNAGYSVDG----------GYAEYCRA 126
Query: 155 HSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAK 214
            +   VK+      E+                 V     G  V I+G+G  G    Q AK
Sbjct: 127 AADYVVKIPDNLSFEE-AAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGFGHVAVQYAK 185
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
           A G + ++ VD   EK E AK  G    +NP
Sbjct: 186 AMGLN-VVAVDIGDEKLELAKELGADLVVNP 215

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 104/248 (41%), Gaps = 29/248 (11%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE 98
           ++ +  + C SDI      AI  R   I GHEA G V  VG  V +F  G+ V+   I  
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAI-- 86
Query: 99  CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSS--FSEYTVVHS 156
                   +    T EV    +RG     Q +   + G   + +  V    F E+  V+ 
Sbjct: 87  --------TPDWRTSEV----QRGY---HQHSGGMLAG---WKFSNVKDGVFGEFFHVND 128
Query: 157 G--CAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAK 214
                  +    PLE                  +ADI  GS+VV+ G+G VGL    GAK
Sbjct: 129 ADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAK 187
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 274
            RGA RIIGV + P   E AK +G T+ LN   N   V QV+K     G D      G +
Sbjct: 188 LRGAGRIIGVGSRPICVEAAKFYGATDILN-YKNGHIVDQVMKLTNGKGVDRVIMAGGGS 246
Query: 275 GMITTALQ 282
             ++ A++
Sbjct: 247 ETLSQAVK 254

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 31/249 (12%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE 98
           ++ +  + C SDI      AI  R   I GHEA G V  VG  V +F  G+ V+   I  
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAI-- 86
Query: 99  CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSS--FSEYTVVHS 156
                   +    T EV    +RG     Q +   + G   + +  V    F E+  V+ 
Sbjct: 87  --------TPDWRTSEV----QRG---YHQHSGGMLAG---WKFSNVKDGVFGEFFHVND 128
Query: 157 G--CAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAK 214
                  +    PLE                  +ADI  G+TV + G+G VGL    GAK
Sbjct: 129 ADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAK 187
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD 273
            RGA RII V + P   + AK +G T+ +N  D   P++  I  +T+G G D +    G+
Sbjct: 188 LRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDG--PIESQIMNLTEGKGVDAAIIAGGN 245
Query: 274 TGMITTALQ 282
             ++ TA++
Sbjct: 246 ADIMATAVK 254

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 31/249 (12%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE 98
           ++ +  + C SDI      AI  R   I GHEA G V  VG  V +F  G+ V+   I  
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAI-- 86
Query: 99  CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSS--FSEYTVVHS 156
                   +    T EV    +RG     Q +   + G   + +  V    F E+  V+ 
Sbjct: 87  --------TPDWRTSEV----QRG---YHQHSGGMLAG---WKFSNVKDGVFGEFFHVND 128
Query: 157 G--CAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAK 214
                  +    PLE                  +ADI  G+TV + G+G VGL    GAK
Sbjct: 129 ADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAK 187
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD 273
            RGA RII V + P   + AK +G T+ +N  D   P++  I  +T+G G D +    G+
Sbjct: 188 LRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDG--PIESQIMNLTEGKGVDAAIIAGGN 245
Query: 274 TGMITTALQ 282
             ++ TA++
Sbjct: 246 ADIMATAVK 254

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 103/248 (41%), Gaps = 29/248 (11%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE 98
           ++ +  S C SDI      A+  R   I GHEA G V  VG  V +F  G+ V+      
Sbjct: 29  VRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIV----- 83
Query: 99  CKTCRQCKSDKSNTCEV-LGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 157
                 C +    + EV  G +        Q +   + G    ++     F EY   H  
Sbjct: 84  -----PCTTPDWRSLEVQAGFQ--------QHSNGMLAGWKFSNFKD-GVFGEY--FHVN 127
Query: 158 CAVKVSSIAPLEKIXXXXXXXXXXXXXXWN---VADISKGSTVVIFGLGTVGLSVAQGAK 214
            A    +I P +                ++   +ADI  GS+VV+ G+G VGL    GAK
Sbjct: 128 DADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAK 187
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 274
            RGA RIIGV + P   E AK +G T+ LN   N     QV+K     G D      G +
Sbjct: 188 LRGAGRIIGVGSRPICVEAAKFYGATDILN-YKNGHIEDQVMKLTNGKGVDRVIMAGGGS 246
Query: 275 GMITTALQ 282
             ++ A++
Sbjct: 247 ETLSQAVK 254

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 97/231 (41%), Gaps = 29/231 (12%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE 98
           ++ +  + C SDI      AI  R   I GHEA G V  VG  V +F  G+ V+   I  
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAI-- 86
Query: 99  CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSS--FSEYTVVHS 156
                   +    T EV    +RG     Q +   + G   + +  V    F E+  V+ 
Sbjct: 87  --------TPDWRTSEV----QRGY---HQHSGGMLAG---WKFSNVKDGVFGEFFHVND 128
Query: 157 G--CAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAK 214
                  +    PLE                  +ADI  GS+VV+ G+G VGL    GAK
Sbjct: 129 ADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAK 187
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGAD 265
            RGA RIIGV + P   E AK +G T+ LN   N   V QV+K     G D
Sbjct: 188 LRGAGRIIGVGSRPICVEAAKFYGATDILN-YKNGHIVDQVMKLTNGKGVD 237

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 96/253 (37%), Gaps = 32/253 (12%)
Query: 40  IRIKVVCTSLCRSDITAWETQAI-----FPRIFGHEASGIVESVGPGVTEFNEGEHVLTV 94
           I +KV    LC SDI   +  A       P   GHE  G V  +G GVT F  G+ V   
Sbjct: 28  ILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVY 87
Query: 95  FIGECKTCRQCKSDKSNTCEV---LGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEY 151
               C  C  C   + N C     LG+   G+            G P        S +EY
Sbjct: 88  GPWGCGACHACARGRENYCTRAADLGITPPGL------------GSP-------GSMAEY 128
Query: 152 TVVHSG-CAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVA 210
            +V S    V +  + P+                   +  +  GST V+ G+G +G    
Sbjct: 129 MIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGI 188
Query: 211 QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 269
           Q  +A  A+R+I VD + ++   A+  G    +    +       I+ +T G GA   F+
Sbjct: 189 QILRAVSAARVIAVDLDDDRLALAREVGADAAVK---SGAGAADAIRELTGGQGATAVFD 245
Query: 270 CIGDTGMITTALQ 282
            +G    I TA Q
Sbjct: 246 FVGAQSTIDTAQQ 258

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 99/258 (38%), Gaps = 29/258 (11%)
Query: 12  TCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITA----WETQAIFPRIF 67
           T KAAV    G+                I++ +  + +C +D+ A    W  +   P I 
Sbjct: 25  TMKAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNPPFIP 84
Query: 68  GHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
           GHE  G V +VG GV    EG+ V +      C  CR C       CE            
Sbjct: 85  GHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCE-----------E 133
Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXW 186
              T +S+ G    +  A  +F    V H    +  + IAP+                  
Sbjct: 134 QLNTGYSVNGGFAEYVVADPNF----VGHLPKNIDFNEIAPV-------LCAGVTVYKGL 182
Query: 187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 246
            V D   G  VVI G+G +G    Q A+A G + +  VD +  K + A+  G T  +N  
Sbjct: 183 KVTDTKPGDWVVISGIGGLGHMAVQYARAMGLN-VAAVDIDDRKLDLARRLGATVTVNAK 241
Query: 247 DNNEPVQQVIKRITDGGA 264
              +P    I++ TDGGA
Sbjct: 242 TVADPA-AYIRKETDGGA 258

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 25/228 (10%)
Query: 40  IRIKVVCTSLCRSDI----TAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHV-LTV 94
           + I ++   +C SDI    + W+ + I+P I GHE +GI++ VG GV +F  G+ V +  
Sbjct: 32  VLIDILYAGICHSDIHSAYSEWK-EGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGC 90
Query: 95  FIGECKTCRQCKSDKSNTCE--VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYT 152
           F+  CK C+ CK  +   C   V   +     H ++                +  +S   
Sbjct: 91  FVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEP--------------HMGGYSNNI 136
Query: 153 VVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQG 212
           VV     + V   APLEK+                 + ++KG+ V + G G +G    + 
Sbjct: 137 VVDENYVISVDKNAPLEKV-APLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKY 195
Query: 213 AKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRI 259
           A A GA   +    N  K + A + GV  F  +P    E +  +I  I
Sbjct: 196 AVAMGAEVSV-FARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTI 242

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 86/212 (40%), Gaps = 33/212 (15%)
Query: 40  IRIKVVCTSLCRSDITAWETQ---AIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFI 96
           +R+KV    +C SD   +      A +PR+ GHE  G++++VG GV     GE V    +
Sbjct: 47  VRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPV 106
Query: 97  GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS 156
             C  C  C   K N C  L +   GV H+D                    FSEY VV +
Sbjct: 107 VSCGHCYPCSIGKPNVCTTLAV--LGV-HAD------------------GGFSEYAVVPA 145
Query: 157 GCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNV---ADISKGSTVVIFGLGTVGLSVAQGA 213
             A K+      E +               NV      ++  TV+++G G +GL++ Q  
Sbjct: 146 KNAWKIP-----EAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVL 200
Query: 214 KA-RGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
           K       +I  D   E+ EKAK  G    +N
Sbjct: 201 KGVYNVKNVIVADRIDERLEKAKESGADWAIN 232

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 105/255 (41%), Gaps = 39/255 (15%)
Query: 40  IRIKVVCTSLCRSDITAWE------TQAIFPRIFGHEASGIVESVGPGVTEFNEGEHV-- 91
           + IKV+ TS+C +D+  +E      ++   P+I GHE +G V  +GPGV     G++V  
Sbjct: 31  VLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVEGIEVGDYVSV 90
Query: 92  -LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 150
              +  G+C  CR+ +       ++ G++  GV                        F+E
Sbjct: 91  ETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGV------------------------FAE 126
Query: 151 YTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVA 210
           Y VV +    K     P E                  +A    G +V+I G G +GL   
Sbjct: 127 YAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTV---LAGPISGKSVLITGAGPLGLLGI 183
Query: 211 QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 269
             AKA GA  +I  + +  + E AK  G    +NP +  E V + +  ITDG G D   E
Sbjct: 184 AVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE--EDVVKEVXDITDGNGVDVFLE 241
Query: 270 CIGDTGMITTALQSC 284
             G    +   LQ+ 
Sbjct: 242 FSGAPKALEQGLQAV 256

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 105/255 (41%), Gaps = 39/255 (15%)
Query: 40  IRIKVVCTSLCRSDITAWE------TQAIFPRIFGHEASGIVESVGPGVTEFNEGEHV-- 91
           + IKV+ TS+C +D+  +E      ++   P+I GHE +G V  +GPGV     G++V  
Sbjct: 32  VLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVEGIEVGDYVSV 91
Query: 92  -LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 150
              +  G+C  CR+ +       ++ G++  GV                        F+E
Sbjct: 92  ETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGV------------------------FAE 127
Query: 151 YTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVA 210
           Y VV +    K     P E                  +A    G +V+I G G +GL   
Sbjct: 128 YAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTV---LAGPISGKSVLITGAGPLGLLGI 184
Query: 211 QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 269
             AKA GA  +I  + +  + E AK  G    +NP +  E V + +  ITDG G D   E
Sbjct: 185 AVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE--EDVVKEVXDITDGNGVDVFLE 242
Query: 270 CIGDTGMITTALQSC 284
             G    +   LQ+ 
Sbjct: 243 FSGAPKALEQGLQAV 257

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 107/255 (41%), Gaps = 39/255 (15%)
Query: 40  IRIKVVCTSLCRSDITAWE------TQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLT 93
           + IKV+ TS+C +D+  +E      ++   P+I GHE +G V  VGPGV +   G+++  
Sbjct: 32  VLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISV 91
Query: 94  VFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 150
                C  C  CK ++ + C+   + G++  GV                        F+ 
Sbjct: 92  ETHIVCGKCYACKHNRYHVCQNTKIFGVDMDGV------------------------FAH 127
Query: 151 YTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVA 210
           Y +V +  A K     P E                  +A    G + +I G G +GL   
Sbjct: 128 YAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTV---LAGPIAGRSTLITGAGPLGLLGI 184
Query: 211 QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 269
             AKA GA  +I  + +  + + AK  G    +NP + + PV+ V+  ITDG G +   E
Sbjct: 185 AVAKASGAYPVIVSEPSEFRRKLAKKVGADYVVNPFEED-PVKFVMD-ITDGAGVEVFLE 242
Query: 270 CIGDTGMITTALQSC 284
             G    +   L++ 
Sbjct: 243 FSGAPKALEQGLKAV 257

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 89/236 (37%), Gaps = 43/236 (18%)
Query: 40  IRIKVVCTSLCRSDITA----WETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVF 95
           +++K+  + +C +D+ A    W  +   P I GHE  G V +VG GV+   EG+ V   +
Sbjct: 30  VQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPW 89
Query: 96  I-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 154
           +   C  C  C       CE             Q T +S+ G           + EY V 
Sbjct: 90  LYSACGYCEHCLQGWETLCE-----------KQQNTGYSVNG----------GYGEYVVA 128
Query: 155 HSGCA------VKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLS 208
                      V    IAP+                   V D   G  VVI G+G +G  
Sbjct: 129 DPNYVGLLPDKVGFVEIAPI-------LCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHV 181
Query: 209 VAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGA 264
             Q A+A G  R+  VD +  K   A+  G    +N  D  +P   + K I  GGA
Sbjct: 182 AVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARD-TDPAAWLQKEI--GGA 233

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 44/239 (18%)
Query: 40  IRIKVVCTSLCRSDITAWETQAI------FPRIFGHEASGIVESVGPGVTEFNEGEHVLT 93
           +R+++   +L   D+  W  + +       P + G + SG+V++VGPGV  F  G+ V+ 
Sbjct: 30  VRVRLKAAALNHLDV--WVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVI 87
Query: 94  VFIGECKTCRQCKSDKSNTC---EVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 150
                C  C +C + + N C   ++LG  R G                        +++E
Sbjct: 88  NPGLSCGRCERCLAGEDNLCPRYQILGEHRHG------------------------TYAE 123
Query: 151 YTVV-HSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSV 209
           Y V+  +  A K  +++  E+                +   +  G  V++   G+ G+SV
Sbjct: 124 YVVLPEANLAPKPKNLS-FEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGS-GVSV 181
Query: 210 A--QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GAD 265
           A  Q AK  GA R+I    + +K  +AKA G  E +N    + P +  ++R+T G GAD
Sbjct: 182 AAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTHPDWPKE--VRRLTGGKGAD 237

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 100/268 (37%), Gaps = 45/268 (16%)
Query: 8   PQVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITA----WETQAIF 63
           PQ  T KAAV    G                 + +K+  + +C +D+ A    W  +   
Sbjct: 4   PQ--TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPL 61
Query: 64  PRIFGHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRG 122
           P I GHE  G V +VG GVT   EG+ V +      C  C  C +     CE        
Sbjct: 62  PFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCE-------- 113
Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA------VKVSSIAPLEKIXXXXX 176
              S Q T +S+ G           ++EY +            V+ + IAP+        
Sbjct: 114 ---SQQNTGYSVNG----------GYAEYVLADPNYVGILPKNVEFAEIAPI-------L 153
Query: 177 XXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
                        +   G  V I G+G +G    Q A+A G   +  +D +  K E A+ 
Sbjct: 154 CAGVTVYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARK 212
Query: 237 FGVTEFLNPNDNNEPVQQVIKRITDGGA 264
            G +  +N     +PV+ + + I  GGA
Sbjct: 213 LGASLTVNAR-QEDPVEAIQRDI--GGA 237

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 66  IFGHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 124
           + GHE  GIV+ +G  V+    G+ V +  F   C  C  C S     C  +        
Sbjct: 57  VLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREV-------- 108
Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKIXXXXXXXXXXXX 183
              +   +S+ G            +E  +V +  AVKV   + P+E              
Sbjct: 109 ---KNAGYSVDG----------GMAEEAIVVADYAVKVPDGLDPIE--ASSITCAGVTTY 153
Query: 184 XXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
               V+ +  G   VIFG G +G    Q AK    +++I VD N +K   AK  G    +
Sbjct: 154 KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVII 213
Query: 244 NPNDNNEPVQQVIKRITDG 262
           N  D N PV + IK+IT G
Sbjct: 214 NSGDVN-PVDE-IKKITGG 230

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 98/258 (37%), Gaps = 44/258 (17%)
Query: 40  IRIKVVCTSLCRSDITAWETQAIF------PRIFGHEASGIVESVGPGVTEFNEGEHVLT 93
           + +++    +C SD+  +E   I       P + GHEASG V  VG  V    +G+ V  
Sbjct: 31  VLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAV 90
Query: 94  VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVS----SFS 149
                C+ C+ CK  K N C                        P   +CA      + +
Sbjct: 91  EPGVPCRRCQFCKEGKYNLC------------------------PDLTFCATPPDDGNLA 126
Query: 150 EYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSV 209
            Y V  +    K+     LE+                  A +  G+TV++ G G +GL  
Sbjct: 127 RYYVHAADFCHKLPDNVSLEE--GALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVS 184
Query: 210 AQGAKARGASRIIGVDTNPEKCEKAKAFG--VTEFLNPNDNNEPVQQVIKRITDGGADY- 266
              AKA GA  ++    +P + E AK  G  VT  ++P    E    +I+RI     D  
Sbjct: 185 VLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEE--SSIIERIRSAIGDLP 241
Query: 267 --SFECIGDTGMITTALQ 282
             + +C G+   IT  + 
Sbjct: 242 NVTIDCSGNEKCITIGIN 259

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 93/245 (37%), Gaps = 38/245 (15%)
Query: 40  IRIKVVCTSLCRSDITAWET----QAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVF 95
           I ++ +  SL   D    ET       FP +   + SG+VE+VG  VT F  G+ V++ F
Sbjct: 56  IIVRTLAVSLNYRDKLVLETGXGLDLAFPFVPASDXSGVVEAVGKSVTRFRPGDRVISTF 115
Query: 96  IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH 155
                   +  + ++   E LG    GV+                        SEY V+ 
Sbjct: 116 APGWLDGLRPGTGRTPAYETLGGAHPGVL------------------------SEYVVLP 151
Query: 156 SGCAVKVSSIAPLEKIXXXXXXXXXXXXXXW----NVADISKGSTVVIFGLGTVGLSVAQ 211
            G  V     AP                  W        +  G  VV+ G G V L   Q
Sbjct: 152 EGWFVA----APKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQ 207
Query: 212 GAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 271
            AKA GA  I+   ++ EK ++A A G    +N  + +  V++V     D GAD+  E  
Sbjct: 208 IAKATGAEVIV-TSSSREKLDRAFALGADHGINRLEEDW-VERVYALTGDRGADHILEIA 265
Query: 272 GDTGM 276
           G  G+
Sbjct: 266 GGAGL 270

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVM 124
           + GHE  GIV+ +G  V+    G+ V   +  E C  C  C S     C  +        
Sbjct: 57  VLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREV-------- 108
Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKIXXXXXXXXXXXX 183
              +   +S+ G            +E  +V +  AVKV   + P+E              
Sbjct: 109 ---KNAGYSVDG----------GMAEEAIVVADYAVKVPDGLDPIE--ASSITCAGVTTY 153
Query: 184 XXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
               V+ +  G   VIFG G +G    Q AK    +++I VD N +K   AK  G    +
Sbjct: 154 KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTI 213
Query: 244 NPNDNNEPVQQVIKRITDG 262
           N  D N PV + IK+IT G
Sbjct: 214 NSGDVN-PVDE-IKKITGG 230

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 91/237 (38%), Gaps = 28/237 (11%)
Query: 40  IRIKVVCTSLCRSD--ITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIG 97
           + +KV    +C +D  +   E  +  P   GHE  GIV   G  V +   G  +      
Sbjct: 50  LLVKVEACGICGTDRHLLHGEFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNI 109
Query: 98  ECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 157
            C  C QC++ + N C  L   R   +H D                    F+EY +V   
Sbjct: 110 SCGRCPQCQAGRVNLCRNL---RAIGIHRD------------------GGFAEYVLVPRK 148
Query: 158 CAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARG 217
            A ++     L+ +               +++ I  GSTV I G G +GL   Q A+  G
Sbjct: 149 QAFEIPLT--LDPVHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAG 206
Query: 218 ASRIIGVDTNPEKCEKAKAFGVTEFLNPN--DNNEPVQQVIKRITDGGADYSFECIG 272
           A+ +I       K   A+  G T  ++P+  D  E +   +  +  GG D   EC G
Sbjct: 207 ATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVG-LVPGGVDVVIECAG 262

>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 97/248 (39%), Gaps = 29/248 (11%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR---IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE 98
           ++ +  + C SDI      AI  R   I GHEA G V  VG  V +F  G+ V+   I  
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAI-- 86
Query: 99  CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSS--FSEYTVVHS 156
                   +    T EV    +RG     Q +   + G   + +  V    F E+  V+ 
Sbjct: 87  --------TPDWRTSEV----QRGY---HQHSGGMLAG---WKFSNVKDGVFGEFFHVND 128
Query: 157 G--CAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAK 214
                  +    PLE                  +A+I  G TV + G+G VGL    GA 
Sbjct: 129 ADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGAN 187
Query: 215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 274
             GA RI  V +    C+ A  +G T+ +N   N + V+Q++K     G D      GD 
Sbjct: 188 HLGAGRIFAVGSRKHCCDIALEYGATDIIN-YKNGDIVEQILKATDGKGVDKVVIAGGDV 246
Query: 275 GMITTALQ 282
                A++
Sbjct: 247 HTFAQAVK 254

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 44/228 (19%)
Query: 40  IRIKVVCTSLCRSDITAWETQ---AIFPRIFGHEASGIVESVGPGVTEFNEGEHV-LTVF 95
           +R KV+   +C SD+ + +     +++P + GHE  G V  VG  V + N G+ V +   
Sbjct: 44  VRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCL 103
Query: 96  IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH 155
           +G C +C  C +D  N C  + L    + H    T                 +S + V +
Sbjct: 104 VGACHSCESCANDLENYCPKMILTYASIYHDGTIT--------------YGGYSNHMVAN 149
Query: 156 SGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLS------- 208
               ++     PL+                   A I+  S +  FGL   G         
Sbjct: 150 ERYIIRFPDNMPLD------------GGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLG 197
Query: 209 -----VAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNE 250
                  + AKA G S++  + T+P K E+A K FG   FL   D  +
Sbjct: 198 GLGHVAVKFAKAFG-SKVTVISTSPSKKEEALKNFGADSFLVSRDQEQ 244

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 30/231 (12%)
Query: 40  IRIKVVCTSLCRSDITAWETQ----AIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVF 95
           + I V  + +C +D+ AW          P + GHE +G+V  +G  V  +  G++    +
Sbjct: 33  LLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKW 92
Query: 96  I-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 154
           + G C  C  C+    + C           H+D              Y    SF +Y   
Sbjct: 93  LNGSCMACEYCELGNESNCP----------HADLSG-----------YTHDGSFQQYATA 131
Query: 155 HSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGL-GTVGLSVAQGA 213
            +  A  +     L ++                 A++  G  V I G  G +G    Q A
Sbjct: 132 DAVQAAHIPQGTDLAQVAPILCAGITVYKAL-KSANLMAGHWVAISGAAGGLGSLAVQYA 190
Query: 214 KARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGA 264
           KA G  R++G+D    K E  ++ G   F++     + V  V+K  TDGGA
Sbjct: 191 KAMG-YRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKA-TDGGA 239

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 36/243 (14%)
Query: 40  IRIKVVCTSLCRSDITAW---ETQAIF--PRIFGHEASGIVESVGPGVTEFNEGEHVLTV 94
           + I++    +CR+D+  W   E +  F  P I GHE +G +  VG  + +  +G++V+  
Sbjct: 31  VLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGE-LAKVKKGDNVVVY 89
Query: 95  FIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 154
                 TCR C+  K N C                     K + +        FSEY +V
Sbjct: 90  ATWGDLTCRYCREGKFNIC---------------------KNQIIPGQTTNGGFSEYMLV 128
Query: 155 HSG-CAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGS--TVVIFGLGTVGLSVAQ 211
            S    VK++S++P+E                  +  ISK +   V++ G+G + +   Q
Sbjct: 129 KSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQ 188
Query: 212 GAKARGAS-RIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 269
             KA   +  I+G+  + +  + A   G        D     + +I ++TDG GA  + +
Sbjct: 189 ILKALMKNITIVGISRSKKHRDFALELGADYVSEMKD----AESLINKLTDGLGASIAID 244
Query: 270 CIG 272
            +G
Sbjct: 245 LVG 247

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 98/242 (40%), Gaps = 43/242 (17%)
Query: 40  IRIKVVCTSLCRSDITAWETQ-----------AIFPRIFGHEASGIVESVGPGVTEFNEG 88
           + IK+    +C SD+   + +              P   GHE +G +E VG  V  +++G
Sbjct: 28  VLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGRIEEVGDEVVGYSKG 87
Query: 89  EHV-LTVFIGE--CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAV 145
           + V +  + GE  C  CR  +    ++   LG+   G                       
Sbjct: 88  DLVAVNPWEGEGNCYYCRIGEEHLCDSPRWLGINYDG----------------------- 124
Query: 146 SSFSEYTVV-HSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGT 204
            +++EY +V H     K+  ++ +E                    D SK + VVI   G 
Sbjct: 125 -AYAEYVLVPHYKYLYKLRRLSAVEAAPLTCSGVTTYRAVRKASLDPSK-TLVVIGAGGG 182
Query: 205 VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-G 263
           +G    Q AKA   + IIGVD   E  E AK  G    +N + + +PV + I+RIT G G
Sbjct: 183 LGTMAIQIAKAVSGATIIGVDVREEALEAAKRAGADYVINAS-SQDPVSE-IRRITQGKG 240
Query: 264 AD 265
           AD
Sbjct: 241 AD 242

>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From Thermotoga Maritima Length = 404

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 94/270 (34%), Gaps = 51/270 (18%)
Query: 40  IRIKVVCTSLCRSDITAWETQAI----------FPRIFGHEASGIVESVGPGV------T 83
           I IKV    +C SD+   +T             FP   GHE SG+V   GP         
Sbjct: 58  IIIKVKACGICGSDVHXAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNK 117
Query: 84  EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYC 143
            F  GE V       C  CR C     N CE L            +  F++ G       
Sbjct: 118 RFEIGEPVCAEEXLWCGHCRPCAEGFPNHCENL-----------NELGFNVDG------- 159
Query: 144 AVSSFSEYTVVHSGCAVKVSSIAPLEKIXX-----XXXXXXXXXXXXWNV-----ADISK 193
              +F+EY  V +  A    S+  LE +                   +N        I  
Sbjct: 160 ---AFAEYVKVDAKYA---WSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRP 213
Query: 194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ 253
           G  VVI G G +GL+     K  GAS++I  + +  +   AK  G    ++P   N  V+
Sbjct: 214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENF-VE 272
Query: 254 QVIKRITDGGADYSFECIGDTGMITTALQS 283
            V+      GA    E  G   ++   ++ 
Sbjct: 273 AVLDYTNGLGAKLFLEATGVPQLVWPQIEE 302

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
           +A+I  G TV + G+G VGL    GA   GA RI  V +    C+ A  +G T+ +N   
Sbjct: 161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIIN-YK 219
Query: 248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQ 282
           N + V+Q++K     G D      GD      A++
Sbjct: 220 NGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVK 254

>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase Length = 398

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 42  IKVVCTSLCRSDITAWETQAIFPR--IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGEC 99
           +KVV T++C SD   +  + I P+  + GHE +G V   G  V   + G+ V   F   C
Sbjct: 37  LKVVSTNICGSDQHIYRGRFIVPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVAC 96
Query: 100 KTCRQCKSDKSNTCE 114
             CR CK  +S+ CE
Sbjct: 97  GRCRNCKEARSDVCE 111

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
           +A+I  G TV + G+G VGL    GA   GA RI  V +    C+ A  +G T+ +N   
Sbjct: 161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIIN-YK 219
Query: 248 NNEPVQQVIKRITDGGAD 265
           N + V+Q++K     G D
Sbjct: 220 NGDIVEQILKATDGKGVD 237

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 102/260 (39%), Gaps = 32/260 (12%)
Query: 2   STSIKQPQVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQ- 60
           STS+ +   +  KA  A+ A Q                ++I++    +C SD+    ++ 
Sbjct: 12  STSLYKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEW 71
Query: 61  --AIFPRIFGHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLG 117
              ++P + GHE  G V +VG  V ++  G+ V +   +  CK C +C+    N C    
Sbjct: 72  AGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYC---- 127
Query: 118 LERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-------SSIAPLEK 170
                    D  T       P      +  +S+  VVH    +++       +++APL  
Sbjct: 128 ---------DHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPL-- 176
Query: 171 IXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK 230
                          W      K   V I GLG +G+ +A    A GA  ++   T+  K
Sbjct: 177 --LCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH---AMGA-HVVAFTTSEAK 230
Query: 231 CEKAKAFGVTEFLNPNDNNE 250
            E AKA G  E +N  + +E
Sbjct: 231 REAAKALGADEVVNSRNADE 250

>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 80/200 (40%), Gaps = 10/200 (5%)
Query: 42  IKVVCTSLCRSD--ITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGEC 99
           +KVV T++C SD  +    T A    + GHE +G V   G  V     G+ V   F   C
Sbjct: 38  LKVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVAC 97
Query: 100 KTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA 159
             CR CK   +  C  +   R G  +          G+  Y     + F+   +     A
Sbjct: 98  GRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKA 157
Query: 160 V-KVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA 218
           + K+  +  L  I                 A +  GSTV + G G VGL+ A  A+  GA
Sbjct: 158 MEKIRDLTCLSDILPTGYHGAV-------TAGVGPGSTVYVAGAGPVGLAAAASARLLGA 210
Query: 219 SRIIGVDTNPEKCEKAKAFG 238
           + +I  D NP +   AKA G
Sbjct: 211 AVVIVGDLNPARLAHAKAQG 230

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 116 LGLERRGVMHS--DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXX 173
           LG E  GV+ +  D+ TRF +  +  Y    + ++SE  V+     VK++     E+   
Sbjct: 61  LGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAA 120
Query: 174 XXXXXXXXXXXXWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE 232
                            +  G  ++     G VG    Q AKA GA ++IG  ++PEK  
Sbjct: 121 LMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAA 179
Query: 233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDG 262
            AKA G  E +  + ++E V + +  +TDG
Sbjct: 180 HAKALGAWETI--DYSHEDVAKRVLELTDG 207

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 83/226 (36%), Gaps = 63/226 (27%)
Query: 64  PRIFGHEASGIVESVGPGVTEFNEGEHVLTV----FIGECKTCRQ---CKSDKSNTCEVL 116
           P + G EASG V + G GVT F  G+ V  +    F    K   Q    K  K  + E L
Sbjct: 64  PYVLGREASGTVVAKGKGVTNFEVGDQVAYISNSTFAQYSKISSQGPVMKLPKGTSDEEL 123
Query: 117 GLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXX 176
            L   G++       F+      YH                                   
Sbjct: 124 KLYAAGLLQVLTALSFT---NEAYH----------------------------------- 145
Query: 177 XXXXXXXXXWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK 235
                         + KG  V++F   G VGL + Q  K +GA   I V +  EK + AK
Sbjct: 146 --------------VKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAK 190
Query: 236 AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG-DTGMITTA 280
            +G  E+L      + ++QV+K     G D SF+ +G DT  I+ A
Sbjct: 191 EYG-AEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISLA 235

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 94/260 (36%), Gaps = 50/260 (19%)
Query: 40  IRIKVVCTSLCRSDITAWETQAIFPRI------FGHEASGIVESVGPGVTEFNEGEHVLT 93
           + + V  T +C SD+  W+   I P I       GHE++G V +V P V     G+ V  
Sbjct: 43  VTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAI 102
Query: 94  VFIGECKTCRQCKSDKSNTCE---------VLGLERRGVMHSDQQTRFSIKGKPVYHYCA 144
                C  C  C + + N CE         V GL RR V H            P      
Sbjct: 103 EPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNH------------PAVWCHK 150
Query: 145 VSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGT 204
           + + S      +G  ++  S+A                      A +  G  V+I G G 
Sbjct: 151 IGNMS----YENGAMLEPLSVA----------------LAGLQRAGVRLGDPVLICGAGP 190
Query: 205 VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF---GVTEFLNPNDNNEPVQQVIKRITD 261
           +GL     AKA GA  ++  D +  + + AK      VT  +      E  +++++    
Sbjct: 191 IGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG 250
Query: 262 GGADYSFECIGDTGMITTAL 281
                + EC G    I  A+
Sbjct: 251 IEPAVALECTGVESSIAAAI 270

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 95/255 (37%), Gaps = 41/255 (16%)
Query: 40  IRIKVVCTSLCRSDITAWETQAI------FPRIFGHEASGIVESVGPGVTEFNEGEHVLT 93
           + +K+    +C SD+  W+   I       P + GHEASG V  VG  V     G+ V  
Sbjct: 33  VLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAI 92
Query: 94  VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVS----SFS 149
                 +T   CK  + N                          P   +CA      +  
Sbjct: 93  QPGAPRQTDEFCKIGRYNL------------------------SPTIFFCATPPDDGNLC 128
Query: 150 EYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSV 209
            +   ++    K+      E+                  A ++ G+ V++ G G +GL  
Sbjct: 129 RFYKHNANFCYKLPDNVTFEE--GALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLVN 186
Query: 210 AQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN-PNDNNEPVQQVIKRITDGGADYSF 268
              AKA GA++++  D +  +  KAK  G    L   N++ E + + ++ +     + + 
Sbjct: 187 LLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILEISNESPEEIAKKVEGLLGSKPEVTI 246
Query: 269 ECIGDTGMITTALQS 283
           EC G    + T++Q+
Sbjct: 247 ECTG----VETSIQA 257

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN-EPV 252
           G TVVI G G +GL     A++ GA  +I +  +P + + A+  G    LN  + + E  
Sbjct: 196 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEER 255
Query: 253 QQVIKRITDG-GADYSFECIGDT 274
           ++ I  IT G GAD+  E  GD+
Sbjct: 256 RKAIMDITHGRGADFILEATGDS 278

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-154
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-153
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-152
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-151
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-150
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-126
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-106
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	7e-66
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	2e-56
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-53
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	4e-53
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	1e-52
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	3e-51
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	6e-51
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	7e-51
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	7e-49
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-47
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	3e-46
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-45
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	5e-44
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	4e-39
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	6e-39
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	1e-38
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	3e-38
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	4e-38
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	6e-36
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	3e-35
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	6e-31
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-29
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	8e-25
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	2e-23
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	5e-23
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	8e-23
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	2e-22
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	4e-22
3gms_A	340	Putative NADPH:quinone reductase; structural genom	4e-22
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	6e-22
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	1e-21
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-21
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	4e-21
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	5e-21
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	2e-20
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	3e-20
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	7e-19
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	3e-18
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	7e-18
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-17
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	1e-16
4eye_A	342	Probable oxidoreductase; structural genomics, niai	7e-16
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	7e-16
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	3e-15
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-14
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	1e-14
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	3e-14
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	2e-12
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-11
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	1e-10
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	5e-09
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	4e-08
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	3e-04
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	5e-07
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	3e-06
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	6e-06
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	6e-06
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	7e-06
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	8e-06
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	1e-05
3c85_A	183	Putative glutathione-regulated potassium-efflux S	1e-05
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	1e-05
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	4e-05
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	8e-05
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	9e-05
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	1e-04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	2e-04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-04
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	3e-04
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	3e-04
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	3e-04
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	4e-04

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  434 bits (1118), Expect = e-154
 Identities = 132/284 (46%), Positives = 179/284 (63%), Gaps = 6/284 (2%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--TQAIFPRI 66
           +VI CKAA+AW  G PL +EE+EV+PP+  E+RI+V+ T +C +DI A +   +A+FP +
Sbjct: 5   KVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVV 64

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER----RG 122
            GHE +GIVESVGPGVT F  G+ V+  F  +CK C+ C S  +N C  L   +      
Sbjct: 65  LGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQ 124

Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGL 182
            +  D+ +RF+ KG+ +YH+  VSSFS+YTVV      +V   A LE++CL+ CG S+G 
Sbjct: 125 ELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGY 184

Query: 183 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 242
           GAA N A ++ GST  +FGLG VGLS   G K  GASRII +D N EK  KAKA G T+ 
Sbjct: 185 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDC 244

Query: 243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           LNP + ++PVQ VI  +T GG DYS +C G    +  A+     
Sbjct: 245 LNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL 288

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  433 bits (1115), Expect = e-153
 Identities = 133/279 (47%), Positives = 186/279 (66%), Gaps = 3/279 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---TQAIFPR 65
           +VI CKAAVAW AG+PL +EE+EV PP+  E+RIK++ T++C +D         +  FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I GH  +GIVESVG GVT+   G+ V+ ++I +C  C+ C + K+N C+ + + +   + 
Sbjct: 63  ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 122

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
            D  +RF+ KGK + HY   S+FSEYTVV      K+  +APL+K+CLL CG+S G GAA
Sbjct: 123 PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAA 182

Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            N A +  GS   +FGLG VGL+V  G K  GASRIIGVD N +K  +AK FG TE +NP
Sbjct: 183 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP 242

Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            D ++P+Q+V+  +TDGG DYSFECIG+  ++  AL++C
Sbjct: 243 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC 281

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  429 bits (1106), Expect = e-152
 Identities = 128/288 (44%), Positives = 175/288 (60%), Gaps = 6/288 (2%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-- 58
           M T     + ITCKAAVAW   +PL +E + V PP+  E+RIK++ + +C SD +  +  
Sbjct: 1   MCT---AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEI 57

Query: 59  TQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL 118
             + FP I GHEA G+VES+G GVT    G+ V+ +F+ +C +CR CKS  SN CE   +
Sbjct: 58  IPSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDM 117

Query: 119 ERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGL 178
             +  + +D  +RF+ +GKP+Y+    S+F+EYTVV      K+   APLE  CL+ CG 
Sbjct: 118 GAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGF 176

Query: 179 SAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 238
           + G GAA N A ++ GST  +FGLG VG S   G KA GASRIIGV T+ +K  KA   G
Sbjct: 177 ATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG 236

Query: 239 VTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
            TE LNP D ++P+ +VI   T+GG DY+ EC G    +  ALQS   
Sbjct: 237 ATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC 284

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  427 bits (1100), Expect = e-151
 Identities = 137/281 (48%), Positives = 188/281 (66%), Gaps = 3/281 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET---QAIFPR 65
           +VI CKAAVAW A +PLV+EE+EV+ P   EIRIK++ T +C +D+        +  FP 
Sbjct: 5   KVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPV 64

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           + GHE +GIVESVGPGVTEF  GE V+ +FI +C  CR C+S K+N C          + 
Sbjct: 65  VLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM 124

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
           S ++TRF+ KG+ V  +   S+FS+YTVV+     K+   APL+ +CLL CG+S G GAA
Sbjct: 125 SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAA 184

Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
            N A +  GST  +FGLG VGL+   G  + GA RII VD NP+K EKAK FG T+F+NP
Sbjct: 185 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP 244

Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
           ND++EP+ QV+ ++T+GG D+S EC+G+ G++  AL+SC  
Sbjct: 245 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK 285

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  425 bits (1096), Expect = e-150
 Identities = 133/281 (47%), Positives = 178/281 (63%), Gaps = 4/281 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--TQAIFPRI 66
           +VI CKAAV W   +P  +EEVEV PP+  E+RIK+V T +CRSD            P I
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 125
            GHEA+GIVES+G GVT    G+ V+ +F  +C  CR CK  + N C    L   RG M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM- 123

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
            D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+CL+ CG S G G+A
Sbjct: 124 QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183

Query: 186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243

Query: 246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 286
            D  +P+Q+V+  +++GG D+SFE IG    + TAL  C +
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  362 bits (933), Expect = e-126
 Identities = 89/281 (31%), Positives = 135/281 (48%), Gaps = 9/281 (3%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI--FPRI 66
           ++    AAV    G    ++ +++  PQ +E+ +KVV T +C +D+   + +     P +
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAV 62

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE-VLGLERRGVMH 125
            GHE SGI+E++GP VTE   G+HV+  + G C  C QC +     C    G    G   
Sbjct: 63  LGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD- 120

Query: 126 SDQQTRFSIKGKPVY--HYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 183
           S+         + V   H+ A SSF+ Y +      VKV+   P+E +  L CG+  G G
Sbjct: 121 SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAG 180

Query: 184 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
           A  N   ++  S+ V +G G VGLS    AK  GAS II VD    + E AK  G T  +
Sbjct: 181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI 240

Query: 244 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           N     +     IK ITDGG +++ E  G   ++   + + 
Sbjct: 241 NSKT--QDPVAAIKEITDGGVNFALESTGSPEILKQGVDAL 279

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  313 bits (803), Expect = e-106
 Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 23/287 (8%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---TQAIFPRIF 67
           +   A V     QPLV +E E++      I ++++   +C SD+  +     +   P I 
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75

Query: 68  GHEASGIVESVGPGVT-----EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRG 122
           GHE +G V  V              G+ ++      C  C  CK  K          R+ 
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYL---CPNRKV 132

Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAG 181
              +   + +        H      +S + V+      +KVS    L+ + +  C  +  
Sbjct: 133 YGINRGCSEYP-------HL--RGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATA 183

Query: 182 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
             A     +   G TVVI G G +GL     A++ GA  +I +  +P + + A+  G   
Sbjct: 184 YHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL 243

Query: 242 FLNPND-NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCD 286
            LN  + + E  ++ I  IT G GAD+  E  GD+  +    +    
Sbjct: 244 TLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRR 290

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  208 bits (532), Expect = 7e-66
 Identities = 73/277 (26%), Positives = 106/277 (38%), Gaps = 26/277 (9%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI-----FPRIFG 68
           KA      G   VV ++    P P EI +KV    LC SDI   +  A       P   G
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 69  HEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 128
           HE  G V  +G GVT F  G+ V       C  C  C   + N C               
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCT-------------- 107

Query: 129 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWN 187
             R +  G       +  S +EY +V S   +     + P+    L   GL+     +  
Sbjct: 108 --RAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRV 165

Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 247
           +  +  GST V+ G+G +G    Q  +A  A+R+I VD + ++   A+  G    +    
Sbjct: 166 LPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA 225

Query: 248 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQS 283
                   I+ +T G GA   F+ +G    I TA Q 
Sbjct: 226 G---AADAIRELTGGQGATAVFDFVGAQSTIDTAQQV 259

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  184 bits (469), Expect = 2e-56
 Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 34/281 (12%)

Query: 14  KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWE------TQAIFPRI 66
           KAA      +PL +E+V+        ++ +++    +C +D+   +       Q   P  
Sbjct: 17  KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 76

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHE  G +E V  GV    +G+ V+        TC  C++ +   CE           +
Sbjct: 77  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCE-----------N 125

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIC----LLSCGLSAGL 182
            +    +I G           F+E+        +K+      EK+     L   G++A  
Sbjct: 126 LEFPGLNIDG----------GFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYR 175

Query: 183 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 242
                   +  G+ V I G+G +G    Q  K    + +I +D   EK + A+  G    
Sbjct: 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHV 235

Query: 243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQS 283
           ++   +  PV+QV++     G + + + +G    +      
Sbjct: 236 VDARRD--PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYL 274

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  175 bits (446), Expect = 4e-53
 Identities = 67/283 (23%), Positives = 111/283 (39%), Gaps = 44/283 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWETQAI--FPRIFGHE 70
           K+ V    G  + V E  +      +E+R+K+  + LC SD+          +P   GHE
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHE 60

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCE---VLGLERRGVMHS 126
            SG +++VG GV + + G+ V        C TC +C     + C     +G  R G    
Sbjct: 61  FSGYIDAVGSGVDDLHPGDAV-ACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDG---- 115

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSAGLG 183
                                F+EY VV       + +  P+E       ++ GL     
Sbjct: 116 --------------------GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL----- 150

Query: 184 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
            A+++A   +   V+I G GT+GL   Q A A GA  +  +D + EK   AK+FG  +  
Sbjct: 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTF 210

Query: 244 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCC 285
           N ++      Q+   + +        E  G    +  A++   
Sbjct: 211 NSSE--MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAG 251

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  176 bits (448), Expect = 4e-53
 Identities = 67/283 (23%), Positives = 104/283 (36%), Gaps = 45/283 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQAIFPRIFGHEA 71
           KA      G  + V  V +  P P+++ +KV    +C +D  +   E  +  P   GHE 
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTPPVTLGHEF 83

Query: 72  SGIVESVGPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCE---VLGLERRGVMHSD 127
            GIV   G  V +   G  + T      C  C QC++ + N C     +G+ R G     
Sbjct: 84  CGIVVEAGSAVRDIAPGARI-TGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDG----- 137

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSAGLGA 184
                               F+EY +V    A ++              L+C L      
Sbjct: 138 -------------------GFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL-----H 173

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
             +++ I  GSTV I G G +GL   Q A+  GA+ +I       K   A+  G T  ++
Sbjct: 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVD 233

Query: 245 PNDNNEPVQQVIKRITDG---GADYSFECIGDTGMITTALQSC 284
           P+     V + I         G D   EC G    +  + +  
Sbjct: 234 PSA--GDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLA 274

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  174 bits (443), Expect = 1e-52
 Identities = 78/289 (26%), Positives = 115/289 (39%), Gaps = 53/289 (18%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI------FPRIF 67
            A +    G    + EV+V  P P E+ IKV+ TS+C +D+  +E           P+I 
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKSDKSNTCE---VLGLER 120
           GHE +G V  +GPGV     G++V      E    C  C  C+  + + C+   + G++ 
Sbjct: 66  GHEVAGEVVEIGPGVEGIEVGDYV----SVETHIVCGKCYACRRGQYHVCQNTKIFGVDT 121

Query: 121 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCG 177
            G                         F+EY VV +    K     P E   L   L   
Sbjct: 122 DG------------------------VFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNA 157

Query: 178 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 237
           +   L           G +V+I G G +GL     AKA GA  +I  + +  + E AK  
Sbjct: 158 VDTVLAG------PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV 211

Query: 238 GVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCC 285
           G    +NP +  E V + +  ITDG G D   E  G    +   LQ+  
Sbjct: 212 GADYVINPFE--EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVT 258

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  170 bits (434), Expect = 3e-51
 Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 45/287 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-----------TQAI 62
           +A      G+PL ++E+ V  P+  ++ IKV    +C SD+   +               
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 63  FPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLE 119
            P   GHE +G +E VG  V  +++G+ V          C  C+  + + C+    LG+ 
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGIN 121

Query: 120 RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS 179
             G                        +++EY +V     +         +   L+C   
Sbjct: 122 FDG------------------------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTC--- 154

Query: 180 AGLGA--AWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
           +G+    A   A +    T+++ G  G +G    Q AKA   + IIGVD   E  E AK 
Sbjct: 155 SGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR 214

Query: 237 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQS 283
            G    +N +  + P+ ++ +     G D   +       ++   ++
Sbjct: 215 AGADYVINASMQD-PLAEIRRITESKGVDAVIDLNNSEKTLSVYPKA 260

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  170 bits (432), Expect = 6e-51
 Identities = 73/288 (25%), Positives = 115/288 (39%), Gaps = 52/288 (18%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI------FPRIF 67
           +A       + L + +  V  P P EI ++V   S+C +D+  W+  A        P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKSDKSNTCE---VLGLER 120
           GHE SG+VE+VGPGV     G+HV      E    C  C  C++   + C    +LG++R
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHV----SLESHIVCHACPACRTGNYHVCLNTQILGVDR 117

Query: 121 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCG 177
            G                         F+EY VV +  A       P E   +       
Sbjct: 118 DG------------------------GFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNA 153

Query: 178 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 237
           +               G +V+I G G +GL  A   +A GA  I+  D NP +   A+ +
Sbjct: 154 V-----HTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY 208

Query: 238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
                +NP +  E + +V++R+T  G +   E  G+   I   L +  
Sbjct: 209 A-DRLVNPLE--EDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALI 253

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  169 bits (431), Expect = 7e-51
 Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 42/285 (14%)

Query: 12  TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-----TQAIFPRI 66
             KAA+     +PL +E+V +  PQ EE+ I++    +CR+D+  W+          P I
Sbjct: 3   KSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPII 62

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGV 123
            GHE +G +  VG  + +  +G++V+        TCR C+  K N C+   + G    G 
Sbjct: 63  LGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNG- 120

Query: 124 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC-GLSA-- 180
                                   FSEY +V S   +   +     +   L+  G ++  
Sbjct: 121 -----------------------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMG 157

Query: 181 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGV 239
            +  A           V++ G+G + +   Q  KA   +  I+G+  + +  + A   G 
Sbjct: 158 AIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA 217

Query: 240 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQS 283
                  D     + +I ++TDG GA  + + +G         + 
Sbjct: 218 DYVSEMKD----AESLINKLTDGLGASIAIDLVGTEETTYNLGKL 258

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  166 bits (422), Expect = 7e-49
 Identities = 72/303 (23%), Positives = 102/303 (33%), Gaps = 61/303 (20%)

Query: 14  KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWETQAI---------- 62
             +  W   + + VEEV      +P EI IKV    +C SD+   +T             
Sbjct: 32  LGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTG 90

Query: 63  FPRIFGHEASGIVESVGPGVTE------FNEGEHVLTVFIGECKTCRQCKSDKSNTCE-- 114
           FP   GHE SG+V   GP          F  GE V    +  C  CR C     N CE  
Sbjct: 91  FPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENL 150

Query: 115 -VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-------SSIA 166
             LG    G                        +F+EY  V +  A  +           
Sbjct: 151 NELGFNVDG------------------------AFAEYVKVDAKYAWSLRELEGVYEGDR 186

Query: 167 PLEKICL---LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIG 223
                 L    S   +A          I  G  VVI G G +GL+     K  GAS++I 
Sbjct: 187 LFLAGSLVEPTSVAYNA---VIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL 243

Query: 224 VDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQ 282
            + +  +   AK  G    ++P    E   + +   T+G GA    E  G   ++   ++
Sbjct: 244 SEPSEVRRNLAKELGADHVIDP--TKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIE 301

Query: 283 SCC 285
              
Sbjct: 302 EVI 304

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  160 bits (408), Expect = 2e-47
 Identities = 63/287 (21%), Positives = 106/287 (36%), Gaps = 48/287 (16%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIF------PRIF 67
            + V  G G  L +E   +  P P E+ +++    +C SD+  WE   I       P + 
Sbjct: 9   LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKSDKSNTCEVLGLERRGV 123
           GHEASG VE VG  V     G+ V      E     +    CK  + N      +     
Sbjct: 68  GHEASGTVEKVGSSVKHLKPGDRV----AIEPGAPRENDEFCKMGRYNLSP--SIFFCAT 121

Query: 124 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSA 180
              D        G          +   +   ++    K+      E+  L   LS G+  
Sbjct: 122 PPDD--------G----------NLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI-- 161

Query: 181 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
               A     ++ G  V++ G G +G+     AKA GA++++  D +  +  KAK  G  
Sbjct: 162 ---HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD 218

Query: 241 EFLNPNDNNEPVQQVIKRITD---GGADYSFECIGDTGMITTALQSC 284
             L  +   E  Q++ +++        + + EC G    I   + + 
Sbjct: 219 LVLQISK--ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYAT 263

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  158 bits (401), Expect = 3e-46
 Identities = 72/287 (25%), Positives = 114/287 (39%), Gaps = 45/287 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIF------PRIF 67
            +AV +     L +E+  +  P+ +E+ +++    +C SD+  +E   I       P + 
Sbjct: 6   LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64

Query: 68  GHEASGIVESVGPGVTEFNEGEHVL---TVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 124
           GHEASG V  VG  V    +G+ V     V    C+ C+ CK  K N C    L      
Sbjct: 65  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVP---CRRCQFCKEGKYNLCP--DLTFCATP 119

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSAG 181
             D        G          + + Y V  +    K+     LE+  L   LS G+   
Sbjct: 120 PDD--------G----------NLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV--- 158

Query: 182 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
              A   A +  G+TV++ G G +GL     AKA GA  ++    +P + E AK  G   
Sbjct: 159 --HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADV 215

Query: 242 FLNPNDNNEPVQQVIKRITDG---GADYSFECIGDTGMITTALQSCC 285
            L  +   E    +I+RI        + + +C G+   IT  +    
Sbjct: 216 TLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITR 262

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  156 bits (397), Expect = 1e-45
 Identities = 62/304 (20%), Positives = 106/304 (34%), Gaps = 49/304 (16%)

Query: 1   MSTSIKQPQ--VITCKAAVAWGAGQPLVVEEVEVNP-PQPEEIRIKVVCTSLCRSDITAW 57
           M++S  +    V T      W +     +E V+     +  E+ + V  T +C SD+  W
Sbjct: 1   MASSASKTNIGVFTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFW 60

Query: 58  ETQAIF------PRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKS 107
           +   I         + GHE++G V +V P V     G+ V      E    C  C  C +
Sbjct: 61  KHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRV----AIEPQVICNACEPCLT 116

Query: 108 DKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 167
            + N CE   ++                G              Y    +    K+ ++  
Sbjct: 117 GRYNGCE--RVDFLSTPPVP--------G----------LLRRYVNHPAVWCHKIGNM-S 155

Query: 168 LEKICL---LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGV 224
            E   +   LS  L     A    A +  G  V+I G G +GL     AKA GA  ++  
Sbjct: 156 YENGAMLEPLSVAL-----AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVIT 210

Query: 225 DTNPEKCEKAKAFGVTEFLNPNDNN---EPVQQVIKRITDGGADYSFECIGDTGMITTAL 281
           D +  + + AK        +  +     E  +++++         + EC G    I  A+
Sbjct: 211 DIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAI 270

Query: 282 QSCC 285
            +  
Sbjct: 271 WAVK 274

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  152 bits (386), Expect = 5e-44
 Identities = 66/277 (23%), Positives = 101/277 (36%), Gaps = 28/277 (10%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TAWE--TQAIFPRIFGHE 70
           K       G+ +   E E   P P +  ++ +  + C SDI T +E         I GHE
Sbjct: 2   KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
           A G V  VG  V +F  G+ V+   I       + +         +              
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGML----AGWKFSNV- 115

Query: 131 RFSIKGKPVYHYCAVSSFSEYTVVH--SGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 188
                G           F E+  V+        +    PLE   ++   ++ G   A   
Sbjct: 116 ---KDG----------VFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAEL- 161

Query: 189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 248
           A+I  G TV + G+G VGL    GA   GA RI  V +    C+ A  +G T+ +N  + 
Sbjct: 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN- 220

Query: 249 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSC 284
              + + I + TDG G D      GD      A++  
Sbjct: 221 -GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMI 256

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  139 bits (352), Expect = 4e-39
 Identities = 65/263 (24%), Positives = 109/263 (41%), Gaps = 36/263 (13%)

Query: 12  TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITA----WETQAIFPRIF 67
           T K  + + +   L  +++ V  P+  E+ I V  + +C +D+ A    W      P + 
Sbjct: 5   TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64

Query: 68  GHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
           GHE +G+V  +G  V  +  G++  +    G C  C  C+    + C             
Sbjct: 65  GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCP-----------H 113

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG--A 184
              + ++  G          SF +Y    +  A  +     L ++  + C   AG+    
Sbjct: 114 ADLSGYTHDG----------SFQQYATADAVQAAHIPQGTDLAQVAPILC---AGITVYK 160

Query: 185 AWNVADISKGSTVVIFGLGTVGL-SVA-QGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 242
           A   A++  G  V I G    GL S+A Q AKA G  R++G+D    K E  ++ G   F
Sbjct: 161 ALKSANLMAGHWVAISGAAG-GLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVF 218

Query: 243 LNPNDNNEPVQQVIKRITDGGAD 265
           ++     + V  V+K  TDGGA 
Sbjct: 219 IDFTKEKDIVGAVLK-ATDGGAH 240

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  138 bits (350), Expect = 6e-39
 Identities = 74/261 (28%), Positives = 106/261 (40%), Gaps = 35/261 (13%)

Query: 12  TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITA----WETQAIFPRIF 67
             KAAV    G PL ++EV V  P P ++++K+  + +C +D+ A    W  +   P I 
Sbjct: 2   MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIP 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
           GHE  G V +VG GV+   EG+ V +      C  C  C       CE            
Sbjct: 62  GHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCE-----------K 110

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-- 184
            Q T +S+ G           + EY V        +       +I  + C   AG+    
Sbjct: 111 QQNTGYSVNG----------GYGEYVVADPNYVGLLPDKVGFVEIAPILC---AGVTVYK 157

Query: 185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
              V D   G  VVI G+G +G    Q A+A G  R+  VD +  K   A+  G    +N
Sbjct: 158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVN 216

Query: 245 PNDNNEPVQQVIKRITDGGAD 265
             D + P   + K I  GGA 
Sbjct: 217 ARDTD-PAAWLQKEI--GGAH 234

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  138 bits (349), Expect = 1e-38
 Identities = 49/294 (16%), Positives = 92/294 (31%), Gaps = 48/294 (16%)

Query: 14  KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWE--------TQAIFP 64
           KA +       + V++V+        +I+I+ +   +C +D              +    
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 65  RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 124
            + GHEA G+VE    G ++   G+ V+ V    C  CR C   + + CE       G+ 
Sbjct: 62  LVLGHEAIGVVEESYHGFSQ---GDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK----VSSIA----PL---EKICL 173
             D        G             E+        VK    +  I     PL   EK   
Sbjct: 119 KMD--------G----------FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIE 160

Query: 174 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 233
               +   +              V++ G G +G+      +  G    +     P + E+
Sbjct: 161 EILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQ 220

Query: 234 AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV 287
                     N  +++    ++  + + G  D   +    TG     L +   +
Sbjct: 221 TVIEETK--TNYYNSSNGYDKL--KDSVGKFDVIIDA---TGADVNILGNVIPL 267

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  137 bits (346), Expect = 3e-38
 Identities = 53/290 (18%), Positives = 87/290 (30%), Gaps = 45/290 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIF------PRIF 67
           KA          VV E     P+  E  ++ +   +C +D                  + 
Sbjct: 2   KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHV-LTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMH 125
           GHEA G+V  V P  TE  EG+ V  TV       T    + D+ +              
Sbjct: 62  GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAP----------- 108

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK----VSSIAPLEKICLLSCGLSA- 180
                 +  +G    H       SE+        V+     + +  L  I  +S    A 
Sbjct: 109 ---DGMYFERGIVGAH----GYMSEFFTSPEKYLVRIPRSQAELGFL--IEPISITEKAL 159

Query: 181 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKA--RGASRIIGV---DTNPEKCEKAK 235
               A   A     S+  + G G++GL      K   +G   +  +   D      +  +
Sbjct: 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE 219

Query: 236 AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
               T   +     E V  V         D+ +E  G       ++Q+  
Sbjct: 220 ELDATYVDSRQTPVEDVPDVY-----EQMDFIYEATGFPKHAIQSVQALA 264

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  136 bits (344), Expect = 4e-38
 Identities = 73/260 (28%), Positives = 106/260 (40%), Gaps = 37/260 (14%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITA----WETQAIFPRIFGH 69
           KAAV     +PL ++EVE       E+ +++    +C +D+ A    W  +   P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 70  EASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 128
           E  GIVE VGPGVT    G+ V +      C  C  C S +   CE             +
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE-----------HQK 110

Query: 129 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN- 187
              +S+ G           ++EY    +   VK+      E+   + C   AG+   +  
Sbjct: 111 NAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFC---AGV-TTYKA 156

Query: 188 --VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 245
             V     G  V I+G+G +G    Q AKA G   ++ VD   EK E AK  G    +NP
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP 215

Query: 246 NDNNEPVQQVIKRITDGGAD 265
               E   + +K    GG  
Sbjct: 216 LK--EDAAKFMKEKV-GGVH 232

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  132 bits (333), Expect = 6e-36
 Identities = 69/281 (24%), Positives = 109/281 (38%), Gaps = 43/281 (15%)

Query: 14  KAAVAWGAGQPLVVEEVE----VNP---PQPEEIRIKVVCTSLCRSDITAW----ETQAI 62
           +  V  G+G+ + V++++     +P        + +KVV T++C SD         T A 
Sbjct: 4   RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQ--HMVRGRTTAQ 60

Query: 63  FPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRG 122
              + GHE +G V   G  V     G+ V   F   C  CR CK   +  C  +   R G
Sbjct: 61  VGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAG 120

Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFS----EYTVV---HSGCAV---KVSSIAPLEKIC 172
                            Y Y  +  ++    EY +V            +  ++  +  + 
Sbjct: 121 GA---------------YGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLT 165

Query: 173 LLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 232
            LS  L  G   A   A +  GSTV + G G VGL+ A  A+  GA+ +I  D NP +  
Sbjct: 166 CLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA 224

Query: 233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
            AKA G        D   P+ + I  +      D + + +G
Sbjct: 225 HAKAQGFEIADLSLD--TPLHEQIAALLGEPEVDCAVDAVG 263

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  130 bits (328), Expect = 3e-35
 Identities = 67/279 (24%), Positives = 107/279 (38%), Gaps = 39/279 (13%)

Query: 14  KAAVAWGAGQPLVVEEVE----VNP--PQPEEIRIKVVCTSLCRSD------ITAWETQA 61
           K+ V  G    L VE V      +        + +KVV T++C SD              
Sbjct: 4   KSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPK-- 60

Query: 62  IFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 121
               + GHE +G V   G  V   + G+ V   F   C  CR CK  +S+ CE   +   
Sbjct: 61  --GHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPD 118

Query: 122 GVMHSDQQTRFSIKGKPVYHYCAVS-SFSEYTVVH--SGCAVKV----SSIAPLEKICLL 174
             +           G   +     S   +EY +V       +K      ++  ++ + L+
Sbjct: 119 ADL-----------GAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLI 167

Query: 175 SCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 234
           S  L  G     + A +  GS V I G G VG   A GA+  GA+ +I  D NPE+ +  
Sbjct: 168 SDILPTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLL 226

Query: 235 KAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
              G    ++  + + P++  I +I      D   + +G
Sbjct: 227 SDAGFET-IDLRN-SAPLRDQIDQILGKPEVDCGVDAVG 263

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  117 bits (296), Expect = 6e-31
 Identities = 66/257 (25%), Positives = 97/257 (37%), Gaps = 40/257 (15%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT----AWETQAIFPRIFGHEASGIVESVGP 80
           L + E  V      +I ++ +  SL   D             FP +   + SG+VE+VG 
Sbjct: 41  LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGK 100

Query: 81  GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY 140
            VT F  G+ V++ F        +  + ++   E LG    GV                 
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGV----------------- 143

Query: 141 HYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN----VADISKGST 196
                   SEY V+  G  V         +   L C   AGL  AW        +  G  
Sbjct: 144 -------LSEYVVLPEGWFVAAPKSLDAAEASTLPC---AGL-TAWFALVEKGHLRAGDR 192

Query: 197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVI 256
           VV+ G G V L   Q AKA GA  +I   ++ EK ++A A G    +N  +  E   + +
Sbjct: 193 VVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLE--EDWVERV 249

Query: 257 KRITDG-GADYSFECIG 272
             +T   GAD+  E  G
Sbjct: 250 YALTGDRGADHILEIAG 266

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  113 bits (285), Expect = 1e-29
 Identities = 66/274 (24%), Positives = 109/274 (39%), Gaps = 46/274 (16%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE----TQAIFPRIF 67
           +A V    G P  L V ++ V  P P+E+R+++   +L   D+   +     +   P + 
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVM 124
           G + SG+V++VGPGV  F  G+ V+      C  C +C + + N C    +LG  R G  
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGT- 120

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
                                  ++EY V+              E+   +       L  
Sbjct: 121 -----------------------YAEYVVLPEANLAPKPKNLSFEEAAAIPL---TFL-T 153

Query: 185 AWN----VADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
           AW        +  G  V++      V ++  Q AK  GA R+I    + +K  +AKA G 
Sbjct: 154 AWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGA 212

Query: 240 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
            E +N         + ++R+T G GAD   +  G
Sbjct: 213 DETVNYTH--PDWPKEVRRLTGGKGADKVVDHTG 244

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  102 bits (255), Expect = 8e-25
 Identities = 55/312 (17%), Positives = 96/312 (30%), Gaps = 71/312 (22%)

Query: 7   QPQVITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDI--------- 54
                   A +      P   + +++V V    P E  + V+ +S+  + +         
Sbjct: 37  HKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLS 96

Query: 55  -----------TAWETQAIFP-RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTC 102
                      +    +   P  + G + +G+V   GPGV  +  G+ V+   +      
Sbjct: 97  TFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELES 156

Query: 103 RQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV 162
               +D     E                   I G            +E  +V S   +  
Sbjct: 157 SDGHNDTMLDPE-----------------QRIWGFETNF----GGLAEIALVKSNQLMPK 195

Query: 163 SSIAPLEKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGL-GTVGLSVAQGAKAR 216
                 E+             A     + N A + +G  V+I+G  G +G    Q A A 
Sbjct: 196 PDHLSWEEAAAPGL---VNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAG 252

Query: 217 GASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ---------------QVIKRITD 261
           GA   I V ++P+K E  +A G    ++ N                      + I+ +T 
Sbjct: 253 GA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTG 311

Query: 262 G-GADYSFECIG 272
           G   D  FE  G
Sbjct: 312 GEDIDIVFEHPG 323

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 63/268 (23%), Positives = 108/268 (40%), Gaps = 48/268 (17%)

Query: 2   STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET-- 59
           STS+ +   +  KA  A+ A QPL   ++    P P +++I++    +C SD+    +  
Sbjct: 12  STSLYKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEW 71

Query: 60  -QAIFPRIFGHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLG 117
              ++P + GHE  G V +VG  V ++  G+ V +   +  CK C +C+    N C+   
Sbjct: 72  AGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCD--- 128

Query: 118 LERRGVMHSDQQTRFSIKGKPVYHYCAVSS---------FSEYTVVHSGCAVKV-SSIAP 167
                                   Y + +          +S+  VVH    +++      
Sbjct: 129 -------------------HMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQ 169

Query: 168 LEKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRII 222
           L  +  L C   AG+        W       G  V + G+G +G    + A A GA  ++
Sbjct: 170 LAAVAPLLC---AGITTYSPLRHWQA---GPGKKVGVVGIGGLGHMGIKLAHAMGA-HVV 222

Query: 223 GVDTNPEKCEKAKAFGVTEFLNPNDNNE 250
              T+  K E AKA G  E +N  + +E
Sbjct: 223 AFTTSEAKREAAKALGADEVVNSRNADE 250

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 96.1 bits (240), Expect = 5e-23
 Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 48/269 (17%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA--- 56
           MS S ++   +      A      L            E++R KV+   +C SD+ +    
Sbjct: 5   MSKSPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKND 64

Query: 57  WETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEV 115
           W   +++P + GHE  G V  VG  V + N G+ V +   +G C +C  C +D  N C  
Sbjct: 65  WG-FSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCP- 122

Query: 116 LGLERRGVMHSDQQTRFSIKGKPVYHYCAVSS--------FSEYTVVHSGCAVKVSSIAP 167
                                K +  Y ++          +S + V +    ++     P
Sbjct: 123 ---------------------KMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMP 161

Query: 168 LEKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRII 222
           L+    L C   AG+        + +     G  + I GLG +G    + AKA G+ ++ 
Sbjct: 162 LDGGAPLLC---AGITVYSPLKYFGLD--EPGKHIGIVGLGGLGHVAVKFAKAFGS-KVT 215

Query: 223 GVDTNPEKCEKA-KAFGVTEFLNPNDNNE 250
            + T+P K E+A K FG   FL   D  +
Sbjct: 216 VISTSPSKKEEALKNFGADSFLVSRDQEQ 244

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 96.4 bits (240), Expect = 8e-23
 Identities = 45/311 (14%), Positives = 87/311 (27%), Gaps = 68/311 (21%)

Query: 5   IKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI---------- 54
           ++       K        + L + EV +    P+E+ + V+ +S+  + +          
Sbjct: 30  LRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPT 89

Query: 55  -----------TAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCR 103
                                 + G + SG+V   G GV  +  G+HV+ V         
Sbjct: 90  FHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQE 148

Query: 104 QCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 163
                                           G            +EY VV +   +   
Sbjct: 149 PATHGDGMLGT----------------EQRAWGFETNFG----GLAEYGVVRASQLLPKP 188

Query: 164 SIAPLEKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARG 217
           +    E+  +          A     +   A + +G  V+I+G  G +G    Q  K  G
Sbjct: 189 AHLTWEEAAVSPL---CAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGG 245

Query: 218 ASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN----------------EPVQQVIKRITD 261
               + V ++ +K    +A G    +N  +                    + +++     
Sbjct: 246 G-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAG 304

Query: 262 GGADYSFECIG 272
              D  FE  G
Sbjct: 305 REPDIVFEHTG 315

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 94.2 bits (235), Expect = 2e-22
 Identities = 65/275 (23%), Positives = 104/275 (37%), Gaps = 65/275 (23%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQAIFPR 65
            AAV    G P   V EEV+V  P P ++R++     +       R+ I         P 
Sbjct: 3   MAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPI 62

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           + G EA+ +VE VGPGVT+F  GE V                                  
Sbjct: 63  VVGFEAAAVVEEVGPGVTDFTVGERV---------------------------------- 88

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
                              + ++S+  +  +   +KV     L+ + L    L  G+ A 
Sbjct: 89  -------------CTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLK-GMTAQ 134

Query: 186 WNVAD---ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
           + +     +  G  V+I    G +G  +   A+  GA  +IG  +  EK E A+  G   
Sbjct: 135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHH 193

Query: 242 FLNPNDNNEPVQQVIKRITDG-GADYSFECIG-DT 274
            +N +  +    +V++ IT G G D  ++ IG DT
Sbjct: 194 TINYSTQD--FAEVVREITGGKGVDVVYDSIGKDT 226

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 93.1 bits (232), Expect = 4e-22
 Identities = 70/289 (24%), Positives = 109/289 (37%), Gaps = 75/289 (25%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSL------CRS 52
           M  +I +      K  +    G    +  E+  V     EE+ IK   T +       R 
Sbjct: 1   MKCTIPE----QQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRK 56

Query: 53  DITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNT 112
            I   E     P + G EASG V + G GVT F  G+ V                     
Sbjct: 57  GIYPCE----KPYVLGREASGTVVAKGKGVTNFEVGDQVA-------------------- 92

Query: 113 CEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS-GCAVKVSSIAPLEKI 171
                                        Y + S+F++Y+ + S G  +K+      E++
Sbjct: 93  -----------------------------YISNSTFAQYSKISSQGPVMKLPKGTSDEEL 123

Query: 172 CLLSCGLSAGLGA---AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN 227
            L + GL   L A         + KG  V++F   G VGL + Q  K +GA   I V + 
Sbjct: 124 KLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVAST 182

Query: 228 PEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG-DT 274
            EK + AK +G    +N +  +  + + + + T+G G D SF+ +G DT
Sbjct: 183 DEKLKIAKEYGAEYLINASKED--ILRQVLKFTNGKGVDASFDSVGKDT 229

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 93.0 bits (232), Expect = 4e-22
 Identities = 51/269 (18%), Positives = 94/269 (34%), Gaps = 62/269 (23%)

Query: 14  KAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT----AWETQAIFPRI 66
           K       G P   L VE   + P +  E+ ++++   +  SD+     A+  +   P I
Sbjct: 6   KLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNI 65

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            G+E  GIVE+VG  V+    G+                         VL L   G    
Sbjct: 66  PGYEGVGIVENVGAFVSRELIGKR------------------------VLPLRGEG---- 97

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAA 185
                               ++ EY    +   V +  SI       +    L+A     
Sbjct: 98  --------------------TWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTA-WVTC 136

Query: 186 WNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 244
               ++ +   +++      +G   AQ ++     R+I V  N +  E+    G    ++
Sbjct: 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVID 195

Query: 245 PNDNNEPVQQVIKRITDG-GADYSFECIG 272
            +    P+ + +  +T+G GAD + + IG
Sbjct: 196 TST--APLYETVMELTNGIGADAAIDSIG 222

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 92.7 bits (231), Expect = 6e-22
 Identities = 55/273 (20%), Positives = 88/273 (32%), Gaps = 66/273 (24%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQAIFPR 65
                   G P  L   E     P   EI+++     +       RS +    +    P 
Sbjct: 3   TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPS---LPS 59

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
             G EA+GIV  VG GV     G+ V                                  
Sbjct: 60  GLGTEAAGIVSKVGSGVKHIKAGDRV---------------------------------- 85

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGA 184
                        VY   A+ ++S    + +  A  + ++I+  +       GL+     
Sbjct: 86  -------------VYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTV-YYL 131

Query: 185 AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
                +I      +     G VGL   Q AKA GA ++IG     +K + A   G  + +
Sbjct: 132 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVI 190

Query: 244 NPNDNNEPVQQVIKRITDG-GADYSFECIG-DT 274
             N   E + + +K IT G      ++ +G DT
Sbjct: 191 --NYREEDLVERLKEITGGKKVRVVYDSVGRDT 221

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 91.9 bits (229), Expect = 1e-21
 Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 66/273 (24%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQAIFPR 65
           K       G P  L   + E   P P+ + ++     L       RS +         P 
Sbjct: 3   KRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPF---LPS 59

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
             G E +G+VE+VG  VT F  G+ V                                  
Sbjct: 60  GLGAEGAGVVEAVGDEVTRFKVGDRV---------------------------------- 85

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGA 184
                         Y    + ++SE  V+     VK+  S++  +   L+  GL+     
Sbjct: 86  -------------AYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTV-QYL 131

Query: 185 AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 243
                 +  G  ++     G VG    Q AKA GA ++IG  ++PEK   AKA G  E +
Sbjct: 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETI 190

Query: 244 NPNDNNEPVQQVIKRITDG-GADYSFECIG-DT 274
             + ++E V + +  +TDG      ++ +G DT
Sbjct: 191 --DYSHEDVAKRVLELTDGKKCPVVYDGVGQDT 221

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 92.1 bits (229), Expect = 1e-21
 Identities = 47/290 (16%), Positives = 84/290 (28%), Gaps = 67/290 (23%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIF---PRIFGHE 70
            A       +  V           +++ ++V   ++  SD      +  F       G +
Sbjct: 13  TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAFLGTD 69

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
            +G V +VG  VT    G+ V                                  ++   
Sbjct: 70  YAGTVVAVGSDVTHIQVGDRVYG------------------------------AQNEMCP 99

Query: 131 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK------------ICLLSCGL 178
           R   +G          +FS+YTV       K+      E+            + +   GL
Sbjct: 100 RTPDQG----------AFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGL 149

Query: 179 SAGLGAAWNVADISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 237
                +A      SK   V+++G  T       Q  +  G    I    +P   + AK+ 
Sbjct: 150 PLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFDLAKSR 207

Query: 238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV 287
           G  E  +       + Q I+  T     Y+ +CI +      +   C   
Sbjct: 208 GAEEVFDYRA--PNLAQTIRTYTKNNLRYALDCITNVE----STTFCFAA 251

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 90.9 bits (226), Expect = 4e-21
 Identities = 49/303 (16%), Positives = 86/303 (28%), Gaps = 89/303 (29%)

Query: 10  VITCKAAVAWGAGQP---LVVEEVEVNPPQPE--EIRIKVVCTSLCRSDI---------- 54
           +IT +A +    G+P   L  +  E++       E+ +K + + +  SDI          
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 55  ---TAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSN 111
              T            G+E    V  VG  V+    G+ V+   +               
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFG------------ 108

Query: 112 TCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKI 171
                                              ++  + + +    +K+ + A  +  
Sbjct: 109 -----------------------------------TWRTHALGNDDDFIKLPNPAQSKAN 133

Query: 172 CLLSCGLSAGLGAAWNV------------ADISKGSTVVIF--GLGTVGLSVAQGAKARG 217
              + GL+   GA  +V              ++ G    I   G   VG   +Q  K   
Sbjct: 134 GKPN-GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN 192

Query: 218 ASRIIGV----DTNPEKCEKAKAFGVTEFLNPNDNNEP-VQQVIKRITD---GGADYSFE 269
               I V        E     K  G T+ +  + NN       IK       G A  +  
Sbjct: 193 F-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALN 251

Query: 270 CIG 272
           C+G
Sbjct: 252 CVG 254

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 90.3 bits (225), Expect = 5e-21
 Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 34/246 (13%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA---WETQAIFPRI 66
           +  K    +   +     +   +   P ++ I ++   +C SDI +A   W+ + I+P I
Sbjct: 3   VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWK-EGIYPMI 61

Query: 67  FGHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
            GHE +GI++ VG GV +F  G+ V +  F+  CK C+ CK  +   C            
Sbjct: 62  PGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCT----------- 110

Query: 126 SDQQTRFSIKGKPVYHYCAVSS--FSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 183
              +  F+      +H        +S   VV     + V   APLEK+  L C   AG+ 
Sbjct: 111 ---KVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLC---AGIT 164

Query: 184 A-----AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 238
                    V   +KG+ V + G G +G    + A A GA  +     N  K + A + G
Sbjct: 165 TYSPLKFSKV---TKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMG 220

Query: 239 VTEFLN 244
           V  F  
Sbjct: 221 VKHFYT 226

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 49/278 (17%), Positives = 87/278 (31%), Gaps = 75/278 (26%)

Query: 14  KAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ------AIFP 64
           +A V    G P   + ++ +E+   +  ++R+K++   +  SDI     Q         P
Sbjct: 28  RALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDI--NMIQGNYGLLPELP 85

Query: 65  RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 124
            + G+E    V +VG  VT    G+ V+    G                  LG       
Sbjct: 86  AVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAG------------------LG------- 120

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
                                 ++    V      ++V S  PL+     +  L      
Sbjct: 121 ----------------------TWRTEAVFSEEALIQVPSDIPLQS----AATLGVNPCT 154

Query: 185 AWN----VADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEK----AK 235
           A+        +  G +V+       VG +V Q A A G  R I V  +    +K     K
Sbjct: 155 AYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLK 213

Query: 236 AFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
           + G    +   +      ++     D      +  C+G
Sbjct: 214 SLGAEHVITEEE--LRRPEMKNFFKDMPQPRLALNCVG 249

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 88.4 bits (220), Expect = 3e-20
 Identities = 57/258 (22%), Positives = 98/258 (37%), Gaps = 48/258 (18%)

Query: 12  TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA---WETQAIFPRIF 67
                 A      L      +    PE++ I+++C  +C +D+          + +P + 
Sbjct: 9   KTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLG-MSNYPMVP 67

Query: 68  GHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
           GHE  G V  VG  V++F  G+ V +   +G C  C  C+ D    C             
Sbjct: 68  GHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCP------------ 115

Query: 127 DQQTRFSIKGKPVYHYCAVSS--------FSEYTVVHSGCAVKVSSIAPLEKICLLSCGL 178
                     K ++ Y  V          F++ TVVH    VK+     +E+   L C  
Sbjct: 116 ----------KKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLC-- 163

Query: 179 SAGLGA-----AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 233
            AG+        + +     G    I GLG VG    + AKA G   +  + ++ +K E+
Sbjct: 164 -AGVTVYSPLSHFGLK--QPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREE 219

Query: 234 A-KAFGVTEFLNPNDNNE 250
           A +  G  +++  +D  +
Sbjct: 220 ALQDLGADDYVIGSDQAK 237

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 84.2 bits (209), Expect = 7e-19
 Identities = 37/258 (14%), Positives = 65/258 (25%), Gaps = 62/258 (24%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT----AWETQAIFPRIFGHEASGIVESVGP 80
           L    + V  P P ++ IKV   S+  SD+      +    +  R  G E  G + + G 
Sbjct: 37  LEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGD 96

Query: 81  GV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPV 139
               +   G+ V                         GL   G                 
Sbjct: 97  EPYAKSLVGKRV---------------------AFATGLSNWG----------------- 118

Query: 140 YHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV---ADISKGST 196
                  S++EY V  +   + +      E        +      A  +           
Sbjct: 119 -------SWAEYAVAEAAACIPLLDTVRDED----GAAMIVNPLTAIAMFDIVKQEGEKA 167

Query: 197 VVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQV 255
            V+      +   +   AK  G  R I      E+    K  G    LN        +  
Sbjct: 168 FVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKA--PDFEAT 224

Query: 256 IKRITDG-GADYSFECIG 272
           ++ +          + + 
Sbjct: 225 LREVMKAEQPRIFLDAVT 242

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 57/270 (21%), Positives = 85/270 (31%), Gaps = 55/270 (20%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA--- 56
           MS     P+     A  +    +     + +  P    +I IK+    +C SDI  A   
Sbjct: 1   MSY----PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGH 56

Query: 57  WETQAIFPRIFGHEASGIVESVGPGV-TEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCE 114
           W      P + GHE  G V  +GP   +    G+ V +   +  C  C +CK+D    C 
Sbjct: 57  WG-NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCT 115

Query: 115 VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSS--------FSEYTVVHSGCAVKVSSIA 166
                                 K V  Y             ++ Y  VH    V +    
Sbjct: 116 ----------------------KFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENI 153

Query: 167 PLEKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGLGTVG-LSVAQGAKARGASR 220
           P      L C    GL                G  V I GLG +G +     +KA GA  
Sbjct: 154 PSHLAAPLLC---GGLTVYSPLVRNGC---GPGKKVGIVGLGGIGSMGT-LISKAMGA-E 205

Query: 221 IIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 250
              +  +  K E A   G   ++   +  +
Sbjct: 206 TYVISRSSRKREDAMKMGADHYIATLEEGD 235

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 81.5 bits (202), Expect = 7e-18
 Identities = 54/280 (19%), Positives = 94/280 (33%), Gaps = 67/280 (23%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT----A 56
             + +++   +              +  +  V  P   ++ ++     +  SDI      
Sbjct: 20  FQSMMQK---LVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGR 76

Query: 57  WETQAIFPRIFGHEASGIVESVGPGVTE-FNEGEHVLTVFIGECKTCRQCKSDKSNTCEV 115
           ++     P   G E  G V ++G   +  +  G+ V  +  G                  
Sbjct: 77  YDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMAPG------------------ 118

Query: 116 LGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLS 175
                                          SF+EYTVV +  A  V S+ P E + LL 
Sbjct: 119 -------------------------------SFAEYTVVPASIATPVPSVKP-EYLTLLV 146

Query: 176 CGLSA--GLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCE 232
            G +A   L     +  +S+G  V++    G  G    Q +K      +IG  ++ EK  
Sbjct: 147 SGTTAYISLK---ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSA 202

Query: 233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 272
             K+ G    +  N   EPV  V+K+    G D  +E +G
Sbjct: 203 FLKSLGCDRPI--NYKTEPVGTVLKQEYPEGVDVVYESVG 240

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 52/278 (18%), Positives = 86/278 (30%), Gaps = 84/278 (30%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE----TQAIFPRIF 67
           +A V  G G    L +    +  PQ  E++I+V    L   D+   +         P + 
Sbjct: 5   RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVP 64

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           G E SGIVE++G  V  +  G+                         V+           
Sbjct: 65  GFECSGIVEALGDSVKGYEIGD------------------------RVMAFVNYN----- 95

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA-- 185
                              +++E          K+               +S    AA  
Sbjct: 96  -------------------AWAEVVCTPVEFVYKIPD------------DMSFSEAAAFP 124

Query: 186 ------WN----VADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 234
                 +     VA++ +G +V++    G VG +VAQ         + G  +   K E  
Sbjct: 125 MNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTAS-TFKHEAI 183

Query: 235 KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 272
           K        +  D N    Q +KRI+  G D   +C+ 
Sbjct: 184 KDSVT----HLFDRNADYVQEVKRISAEGVDIVLDCLC 217

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 50/310 (16%), Positives = 91/310 (29%), Gaps = 100/310 (32%)

Query: 1   MSTSIKQPQVITCKAAVAWGAGQP--LVVE-EVEVNPPQPEEIRIKVVCTSLCRSDIT-- 55
           M+T  K  + +          G P  L +  ++ V  P+  ++ IKV    +   +    
Sbjct: 23  MATGQKLMRAVRVFEF-----GGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIR 77

Query: 56  --AWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTC 113
              +  + + P   G + +G++E+VG   + F +G+ V T                    
Sbjct: 78  SGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFT-------------------- 117

Query: 114 EVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL 173
                   G                         ++EY +       K+           
Sbjct: 118 ---SSTISG------------------------GYAEYALAADHTVYKLPE--------- 141

Query: 174 LSCGLSAGLGAA--------W-NV---ADISKGSTVVIFG-LGTVGLSVAQGAKARGASR 220
               L    GAA        +  +   A +  G +V++ G  G VGL+  Q A+A G  +
Sbjct: 142 ---KLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-K 197

Query: 221 IIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG----------GADY---S 267
           I+G     E  +     G  E  N  +        IK+                      
Sbjct: 198 ILGTAGTEEGQKIVLQNGAHEVFNHRE--VNYIDKIKKYVGEKGIDIIIEMLANVNLSKD 255

Query: 268 FECIGDTGMI 277
              +   G +
Sbjct: 256 LSLLSHGGRV 265

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 75.7 bits (187), Expect = 7e-16
 Identities = 50/271 (18%), Positives = 81/271 (29%), Gaps = 69/271 (25%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT----AWETQAIFPRIF 67
           KA  A     P  LV  +VE     P  + + V    +C  D       ++ +   P + 
Sbjct: 23  KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVP 82

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           G E +G+V S   G +    G+                         V+     G     
Sbjct: 83  GIETAGVVRSAPEG-SGIKPGD------------------------RVMAFNFIG----- 112

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW- 186
                               ++E   V     +         +    +  L A     + 
Sbjct: 113 -------------------GYAERVAVAPSNILPTPPQLDDAE----AVALIANYHTMYF 149

Query: 187 ---NVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 242
                  +  G TV++ G  G +G +  Q AK  GA ++I V       E  K+ G    
Sbjct: 150 AYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIV 208

Query: 243 LNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
           L      E   + ++  T G G D   + IG
Sbjct: 209 LP---LEEGWAKAVREATGGAGVDMVVDPIG 236

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 75.3 bits (186), Expect = 7e-16
 Identities = 56/289 (19%), Positives = 92/289 (31%), Gaps = 76/289 (26%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDI--------TAWETQAIF 63
           KA      G P  L + +      +  ++ IKV   SL   D          A + +   
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67

Query: 64  PRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV 123
           P   G++ SG V  +G  V   N G+                        +V+G+     
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGD------------------------KVMGI----- 98

Query: 124 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAGL 182
                   F               ++EY          K+  ++ L+     +  L    
Sbjct: 99  ------AGFPDHP---------CCYAEYVCASPDTIIQKLEKLSFLQ-----AASLPTAG 138

Query: 183 GAAWNV---ADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 238
             A      A++ +G  V+I    G VG    Q AK +G   +I    +       KA G
Sbjct: 139 LTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITT-ASKRNHAFLKALG 196

Query: 239 VTEFLNPNDNNEPVQQVIKRITD------GGA--DYSFECIGDTGMITT 279
             + +N ++  E     I    D      GG     S +C+ +TG I +
Sbjct: 197 AEQCINYHE--EDFLLAISTPVDAVIDLVGGDVGIQSIDCLKETGCIVS 243

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 39/292 (13%), Positives = 79/292 (27%), Gaps = 93/292 (31%)

Query: 14  KAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSL-------CRSDITAWETQAIF 63
           +    W        + +  V++     ++I ++     +        +++   W      
Sbjct: 3   EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWS----N 58

Query: 64  PRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEV---LGLER 120
             + G + +G++  VG  V     G                          V     L+R
Sbjct: 59  GHVPGVDGAGVIVKVGAKVDSKMLGR------------------------RVAYHTSLKR 94

Query: 121 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSI-------APLEKIC 172
            G                        SF+E+TV+++   + +  ++        P     
Sbjct: 95  HG------------------------SFAEFTVLNTDRVMTLPDNLSFERAAALPC---- 126

Query: 173 LLSCGLSAGLGAAW---NVADISKGSTVVIFGLGTVGLSVA-QGAKARGASRIIGVDTNP 228
                    L  AW       ++K   V+I G G V  ++  Q     G   +  V +  
Sbjct: 127 -------PLL-TAWQAFEKIPLTKQREVLIVGFGAVN-NLLTQMLNNAGY-VVDLV-SAS 175

Query: 229 EKCEKAKAFGVTEFLN-PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITT 279
                A   GV      P+   +    +   +    A      +   G I  
Sbjct: 176 LSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQNAAALVPSLKANGHIIC 227

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 58/281 (20%), Positives = 94/281 (33%), Gaps = 88/281 (31%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE------TQAIFPR 65
           +       G P  +V+ +  +      E+ ++     + R DI   +        A    
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDA--SP 87

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I G E SG +  VGPGV+ +  G+                        +V GL   G   
Sbjct: 88  ILGLELSGEIVGVGPGVSGYAVGD------------------------KVCGLANGG--- 120

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
                                +++EY ++ +G  +                G  A   AA
Sbjct: 121 ---------------------AYAEYCLLPAGQILPFPK------------GYDAVKAAA 147

Query: 186 --------WN----VADISKGSTVVIFGLGT--VGLSVAQGAKARGASRIIGVDTNPEKC 231
                   W     +A +++G +V+I G GT  +G +  Q A+A GA  +     +  KC
Sbjct: 148 LPETFFTVWANLFQMAGLTEGESVLIHG-GTSGIGTTAIQLARAFGA-EVYATAGSTGKC 205

Query: 232 EKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 272
           E  +  G    +N     E    VIK  T  G D   + IG
Sbjct: 206 EACERLGAKRGINYRS--EDFAAVIKAETGQGVDIILDMIG 244

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 58/281 (20%), Positives = 90/281 (32%), Gaps = 86/281 (30%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI------TAWETQAIFPRIF 67
            AAV   A  P V+ ++    P P ++ +++  +     D            Q   P I 
Sbjct: 9   IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQP-LPAIL 67

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           G + +G V +VGP V  F  G+                         V GL         
Sbjct: 68  GMDLAGTVVAVGPEVDSFRVGD------------------------AVFGLTGGV----- 98

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS----AGL- 182
                 ++G          + +++  V +          P          L+    + L 
Sbjct: 99  ----GGLQG----------THAQFAAVDARLLASK----PA--------ALTMRQASVLP 132

Query: 183 ---GAAW----NVADISKGSTVVIFGLGT--VGLSVA-QGAKARGASRIIGVDTNPEKCE 232
                AW    + A +  G TV+I G G   VG  VA Q A ARGA R+          E
Sbjct: 133 LVFITAWEGLVDRAQVQDGQTVLIQG-GGGGVG-HVAIQIALARGA-RVFAT-ARGSDLE 188

Query: 233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
             +  G T      D +   +      T G G D  ++ +G
Sbjct: 189 YVRDLGATPI----DASREPEDYAAEHTAGQGFDLVYDTLG 225

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 71.5 bits (175), Expect = 3e-14
 Identities = 34/286 (11%), Positives = 74/286 (25%), Gaps = 94/286 (32%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSDI------------------------------ 54
           L ++ ++   P P+E+ I++  + L  SD+                              
Sbjct: 20  LSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEG 79

Query: 55  --TAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNT 112
              +   +       G+E +G+V   G            +    G               
Sbjct: 80  AMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIGG--------------- 124

Query: 113 CEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKI 171
                                            + +S+Y  + +   + +     P +  
Sbjct: 125 ---------------------------------AMYSQYRCIPADQCLVLPEGATPADGA 151

Query: 172 CLLSCGLSAGLGAAWNVADISK---GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN 227
                 L+A       + +  +    S +V       +G  + Q     G  +++ +   
Sbjct: 152 SSFVNPLTA-----LGMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRK 205

Query: 228 PEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
            E+ +  KA G     N         Q +       GA  +F+  G
Sbjct: 206 QEQADLLKAQGAVHVCNAAS--PTFMQDLTEALVSTGATIAFDATG 249

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 56/283 (19%), Positives = 88/283 (31%), Gaps = 90/283 (31%)

Query: 14  KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE------TQAIFPR 65
            A      G P  L V+EV    P   E+ +KV  ++L R+D+   +        A    
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGA--SN 81

Query: 66  IFGHEASGIVESVGPGV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 124
           I G EASG V  +GPG    +  G+                          + L   G  
Sbjct: 82  ILGLEASGHVAELGPGCQGHWKIGD------------------------TAMALLPGG-- 115

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
                                   ++Y  V  G  + +              GL+    A
Sbjct: 116 ----------------------GQAQYVTVPEGLLMPIPE------------GLTLTQAA 141

Query: 185 A--------WN----VADISKGSTVVIFGLGT--VGLSVAQGAKARGASRIIGVDTNPEK 230
           A        +     V ++  G  V+I   G   VG +  Q  +  GA   +    + +K
Sbjct: 142 AIPEAWLTAFQLLHLVGNVQAGDYVLIHA-GLSGVGTAAIQLTRMAGA-IPLVTAGSQKK 199

Query: 231 CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
            + A+  G     N     E   +   + T G G +   +CIG
Sbjct: 200 LQMAEKLGAAAGFNYKK--EDFSEATLKFTKGAGVNLILDCIG 240

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 49/273 (17%), Positives = 88/273 (32%), Gaps = 65/273 (23%)

Query: 23  QPLVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQAIFPRIFGHEASGIVE 76
             L+  E+    P   +I ++V   S+       R       T     ++ G++A+GIV 
Sbjct: 38  ASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTD---WKVIGYDAAGIVS 94

Query: 77  SVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKG 136
           +VGP VT F  G+ V                          + R G              
Sbjct: 95  AVGPDVTLFRPGDEVFY---------------------AGSIIRPG-------------- 119

Query: 137 KPVYHYCAVSSFSEYTVVHSGC-AVKVSSIAPLEKICLLSCGLSA--GLGAAWNV--ADI 191
                     + +E+ +V       K  ++   E   L    ++A        +V     
Sbjct: 120 ----------TNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVP 169

Query: 192 SKGSTV-VIFGLGTVGLSVA-QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 249
                + ++ G G VG S+A Q A+ R    +I   + PE  E  K+ G    +   D++
Sbjct: 170 GAAPAILIVGGAGGVG-SIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVI---DHS 225

Query: 250 EPVQQVIKRITDGGADYSFECIGDTGMITTALQ 282
           +P+   +  +  G   + F              
Sbjct: 226 KPLAAEVAALGLGAPAFVFSTTHTDKHAAEIAD 258

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 53/290 (18%), Positives = 90/290 (31%), Gaps = 84/290 (28%)

Query: 14  KAAVAWGAGQPLV---VEEVEV-NPPQPEEIRIKVVCTSL------------------CR 51
            A V    G+  V    + + +     P E+ +KV   S+                   R
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82

Query: 52  SDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSN 111
             +        FP   G + SG+V   G  V  F  G+ V                    
Sbjct: 83  DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWA------------------ 124

Query: 112 TCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC-AVKVSSIAPLEK 170
               +   ++G                        + SE+ VV     + K  S+   + 
Sbjct: 125 ---AVPPWKQG------------------------TLSEFVVVSGNEVSHKPKSLTHTQA 157

Query: 171 ICLLSCGLSAGLGAAWNVADI----SKGSTVVIFG-LGTVGLSVA-QGAKARGASRIIGV 224
             L    L+A   A   V  +      G  V+I G  G VG + A Q  KA  A  +  V
Sbjct: 158 ASLPYVALTA-WSAINKVGGLNDKNCTGKRVLILGASGGVG-TFAIQVMKAWDA-HVTAV 214

Query: 225 DTNPEKCEKAKAFGVTEFLNPND-NNEPVQQVIKRITDGGADYSFECIGD 273
             + +  E  +  G  + +   D  +  V++ +K +     D+  + +G 
Sbjct: 215 -CSQDASELVRKLGADDVI---DYKSGSVEEQLKSL--KPFDFILDNVGG 258

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQAIFP 64
          I  +       G       +++  P+  EI +K+   S+       R  +   +     P
Sbjct: 6  IGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRL-MDVSK----AP 60

Query: 65 RIFGHEASGIVESVGPGVTEFNEGEHV 91
          R+ G +A G+VESVG  VT FN+G+ V
Sbjct: 61 RVLGFDAIGVVESVGNEVTMFNQGDIV 87

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 32/164 (19%), Positives = 53/164 (32%), Gaps = 27/164 (16%)

Query: 115 VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLL 174
           + G+E  GV          ++G+           +E   V  G  + +      E+    
Sbjct: 58  IPGMEVVGV----------VEGRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEE---- 103

Query: 175 SCGLSAGLGAAWNV---ADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEK 230
           +         A+     A    G  V++    G +G +  Q A+A G  R++   + PEK
Sbjct: 104 AAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEK 162

Query: 231 CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD 273
                A G  E     +       V +R     G D   E  G 
Sbjct: 163 LALPLALGAEEAATYAE-------VPERAKAWGGLDLVLEVRGK 199

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT----AWETQAIFPRIFGH 69
          KA V    G PL + ++     +  E+ ++V    L  +D      A+ T+   P I G 
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGM 61

Query: 70 EASGIVE 76
          E  G+VE
Sbjct: 62 EVVGVVE 68

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 79/230 (34%)

Query: 25  LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTE 84
           LV E     P    E+RI +    +   D              G E +G+V   GPGVT 
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPGVASLGSEGAGVVVETGPGVTG 285

Query: 85  FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCA 144
              G+ V+ +                                                  
Sbjct: 286 LAPGDRVMGMIPK----------------------------------------------- 298

Query: 145 VSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS----AGLGAAW--------NVADIS 192
             +F    V       ++ +            G S    A +   +        ++A + 
Sbjct: 299 --AFGPLAVADHRMVTRIPA------------GWSFARAASVPIVFLTAYYALVDLAGLR 344

Query: 193 KGSTVVI-FGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 241
            G ++++    G VG++  Q A+  GA  +    +  +     +A  ++ 
Sbjct: 345 PGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASEDKW----QAVELSR 389

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Length = 290

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 196 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 239
           T+ I GLG +G S+A G K      +I+G + +    + A   G+
Sbjct: 8   TIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI 52

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
           G+ V + GLG VG+SVA+   A GA ++       +   +    G+ 
Sbjct: 155 GANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME 200

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Length = 279

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
           + + GLG +G S+A   + RG   +IGV      CEKA    +
Sbjct: 3   IGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL 44

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Length = 314

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 196 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 239
            V+I G+G +G S A+  +  G   +I G D NPE   KA   G+
Sbjct: 35  NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI 79

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 Length = 281

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 196 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 239
            V+I G+G +G S A+  +  G   +I G D NPE   KA   G+
Sbjct: 3   NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI 47

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 22/143 (15%)

Query: 150 EYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-------AW----NVADISKGSTVV 198
            + +       K+ +  P +        LS  LG        A+     V  +  G TV+
Sbjct: 97  THFISDGKGLEKLLTEWPDK------LPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVL 150

Query: 199 IFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIK 257
           +    G VG  V Q AK +G  +++G   + EK    K  G     N    N  +++ +K
Sbjct: 151 VSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTVN-SLEEALK 208

Query: 258 RITDGGADYSFECIGDTGMITTA 280
           + +  G D  F+ +G  G     
Sbjct: 209 KASPDGYDCYFDNVG--GEFLNT 229

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Length = 183

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
           V+I G+G +G       +AR     +G++   E  ++ ++ G 
Sbjct: 42  VLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGR 84

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Length = 341

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
            V I GLG +G S+ +   A     + G + +    + A   G 
Sbjct: 10  PVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGF 52

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 250
           T++ FG G     +++    +G  RIIG   NP++ E  +A G    L P +   
Sbjct: 7   TLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGEEPS 60

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 150 EYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-------AW----NVADISKGS--T 196
              ++      KV               LS  LGA       +         I+ GS  T
Sbjct: 111 TKVILDGNSLEKVDPQLVDGH-------LSYFLGAIGMPGLTSLIGIQEKGHITAGSNKT 163

Query: 197 VVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQ 254
           +V+ G  G  G    Q     G SR++G+    EKC    +  G    +N     + V +
Sbjct: 164 MVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK--DNVAE 221

Query: 255 VIKRITDGGADYSFECIGDTGMITTA 280
            ++     G D  F+ +G  G I+  
Sbjct: 222 QLRESCPAGVDVYFDNVG--GNISDT 245

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 238
           K     + GLG  G S+ +     G   ++ VD N EK     ++ 
Sbjct: 5   KNKQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASYA 49

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
            G TV++ GLG VG S+A  A   GA +++  DT+ E+   A A G T
Sbjct: 174 DGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT 220

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 238
            ++ G    G+ + +   A G  +++ VD + EK E  +  G
Sbjct: 9   YIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEG 49

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 232
           G  ++I+G G +G S+A  A A G   +IGV+T     +
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHPAD 174

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 177 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 236
           G+ A    A+    + +G  V + GLG V  ++ +     GA +++  D N      A A
Sbjct: 157 GMKAAAKEAFGSDSL-EGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVA 214

Query: 237 FGVTEFLNPND 247
               + + PN 
Sbjct: 215 EEGADAVAPNA 225

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 8/44 (18%), Positives = 14/44 (31%)

Query: 197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 240
           + + G G +G  +A   K      +   D +          GV 
Sbjct: 8   ICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVA 51

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 242
           GS V + GLG  G+++A+   A GA  +     +     +    G+  F
Sbjct: 157 GSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLVPF 204

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 242
           G T++I G G++G  +A   K  G  +++GV  +  +       G  + 
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRERA-----GFDQV 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.94
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.78
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.14
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.75
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.48
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.32
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.3
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.28
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.26
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.18
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.14
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.07
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.07
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.06
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.97
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.89
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.88
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.77
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.71
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.68
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.66
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.64
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.62
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.61
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.61
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.58
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.42
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.41
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.33
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.31
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.26
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.2
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.09
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.07
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.05
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.05
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.04
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.03
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.0
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.98
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.97
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.95
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.93
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.91
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.9
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.89
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.89
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.86
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.85
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.84
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.84
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.81
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.79
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.78
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.77
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.77
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.76
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.75
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.74
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.73
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.73
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.7
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.69
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.69
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.68
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.67
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.66
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.66
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.66
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.66
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.63
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.63
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.63
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.63
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.62
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.61
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.59
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.59
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.57
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.57
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.57
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.57
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.57
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.56
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.56
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.55
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.55
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.55
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.55
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.53
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.53
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.53
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.52
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.52
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.51
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.5
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.5
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.5
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.5
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.5
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.49
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.49
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.48
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.48
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.45
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.45
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.45
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.45
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.42
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.42
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.42
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.41
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.41
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.41
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.41
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.39
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.39
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.39
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.38
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.38
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.38
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.38
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.38
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.37
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.37
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.36
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.35
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.34
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.33
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.33
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.33
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.33
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.33
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.33
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.32
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.32
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.32
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.32
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.31
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.31
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.3
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.3
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.29
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.29
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.29
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.28
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.28
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.28
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.28
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.28
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.27
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.27
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.26
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.26
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.25
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.25
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.25
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.24
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.24
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.24
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.24
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.24
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.23
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.23
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.23
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.23
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.23
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.22
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.22
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.22
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.22
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.21
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.21
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.21
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.21
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.2
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.2
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.2
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.2
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.18
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.17
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.17
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.17
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.16
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.16
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.15
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.15
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.15
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.14
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.13
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.13
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.12
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.12
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.12
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.1
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.1
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.08
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.07
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.07
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.07
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.06
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.06
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.05
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.05
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.04
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.04
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.03
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.03
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.03
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.02
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.01
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.01
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.0
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	95.99
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	95.98
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.98
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	95.97
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.96
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.96
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.95
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.95
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.95
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	95.94
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.94
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	95.94
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	95.94
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.94
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	95.94
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.93
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	95.93
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.92
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.92
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.92
1spx_A	278	Short-chain reductase family member (5L265); paral	95.91
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.91
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.91
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.9
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.89
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	95.88
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	95.88
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.85
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	95.85
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.84
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.84
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.84
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.84
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.83
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	95.82
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	95.81
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.8
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.8
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	95.8
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	95.8
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	95.79
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.78
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.78
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.78
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.77
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.75
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.73
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.72
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.71
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.71
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.7
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	95.7
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.68
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.68
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.68
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.67
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.67
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.67
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	95.67
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.66
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.65
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.64
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.61
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	95.61
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	95.6
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.59
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.58
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	95.58
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.58
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	95.57
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.57
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.57
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.56
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.55
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.53
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.53
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.52
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.52
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	95.52
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.51
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.49
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.49
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.47
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.46
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.45
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.44
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.44
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.44
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.43
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	95.43
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.42
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.42
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.41
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.41
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.41
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.41
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.39
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.39
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.39
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.38
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	95.37
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.37
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	95.36
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.36
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	95.35
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.35
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	95.34
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.33
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.33
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.32
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	95.31
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.29
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.28
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.28
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	95.27
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.26
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.25
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.25
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.25
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.24
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.24
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.23
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	95.23
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	95.22
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.22
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.21
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.2
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.2
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.2
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	95.19
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.19
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.19
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.18
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.15
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.15
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.14
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.11
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.1
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.1
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.1
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	95.1
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.09
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.09
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.07
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.07
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	95.06
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.05
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.03
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.02
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.02
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.01
2o07_A	304	Spermidine synthase; structural genomics, structur	95.0
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.0
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.98
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.98
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	94.97
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	94.96
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.96
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	94.95
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.93
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.92
3i9f_A	170	Putative type 11 methyltransferase; structural gen	94.92
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.92
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	94.91
2i7c_A	283	Spermidine synthase; transferase, structural genom	94.9
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	94.89
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	94.88
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	94.87
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	94.87
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.87
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	94.87
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	94.86
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.85
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	94.85
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	94.85
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	94.83
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	94.81
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	94.78
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	94.78
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	94.78
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	94.76
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.73
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	94.72
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	94.71
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	94.7
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.69
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.67
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	94.64
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.64
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	94.63
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	94.61
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	94.61
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	94.6
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	94.59
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	94.59
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	94.58
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	94.57
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.57
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	94.56
1xxl_A	239	YCGJ protein; structural genomics, protein structu	94.54
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	94.51
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	94.5
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	94.5
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	94.5
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.5
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.5
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	94.5
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	94.49
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	94.47
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	94.47
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	94.47
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	94.47
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	94.46
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	94.46
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	94.43
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	94.42
2esr_A	177	Methyltransferase; structural genomics, hypothetic	94.39
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	94.38

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=3.1e-53  Score=391.18  Aligned_cols=284  Identities=53%  Similarity=0.997  Sum_probs=258.6

Q ss_pred             CCcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCC
Q 022819            7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      +.++++|||+++.+++++++++++|.|+|+++||||||++++||++|++.+.|..   .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~   82 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   82 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCCC
Confidence            4577899999999999889999999999999999999999999999999998875   5799999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccccCccceeeEEEeeccceEEC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  162 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  162 (291)
                      +|++||||++.+..+|+.|.+|++++++.|+..... ..|....+|..++..+|...+++++.|+|+||+.++.++++++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  162 (378)
T 3uko_A           83 EVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKI  162 (378)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEEC
Confidence            999999999999999999999999999999986542 2344435565566667766667777789999999999999999


Q ss_pred             CCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          163 SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       163 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      |+++++++||++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++++
T Consensus       163 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  242 (378)
T 3uko_A          163 DPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEF  242 (378)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEE
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEE
Confidence            99999999999999999999998899999999999999999999999999999999789999999999999999999999


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      +++++.+.++.+.+++++++++|+|||++|.+..++.++++++++ |++
T Consensus       243 i~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~i  291 (378)
T 3uko_A          243 VNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTS  291 (378)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEE
T ss_pred             EccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEE
Confidence            998743478899999998889999999999988999999999996 875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=6.7e-51  Score=374.86  Aligned_cols=285  Identities=46%  Similarity=0.802  Sum_probs=244.0

Q ss_pred             CCccCCCCcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEc
Q 022819            1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESV   78 (291)
Q Consensus         1 m~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~v   78 (291)
                      |+.   ++.+++|||+++.+++++++++++|.|+|+++||||||++++||++|++++.|..  .+|.++|||++|+|+++
T Consensus         1 ~~~---~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~P~v~GhE~~G~V~~v   77 (373)
T 1p0f_A            1 MCT---AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILGHEAVGVVESI   77 (373)
T ss_dssp             -CC---TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSBCCCCCEEEEEEEE
T ss_pred             Ccc---cCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCCCCCCcccCcCceEEEEEE
Confidence            663   3456899999999998789999999999999999999999999999999998865  47899999999999999


Q ss_pred             CCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccc-cccccCCcccceeccCCccccccCccceeeEEEeecc
Q 022819           79 GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG  157 (291)
Q Consensus        79 G~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  157 (291)
                      |+++++|++||||++.+..+|+.|.+|++++++.|+...... .|+. .+|..++..+|...+++...|+|+||+.++.+
T Consensus        78 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~  156 (373)
T 1p0f_A           78 GAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADI  156 (373)
T ss_dssp             CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETT
T ss_pred             CCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccc-cCCccccccCCcccccccCCccceeEEEEchh
Confidence            999999999999999999999999999999999999764311 1322 12211111111111222234799999999999


Q ss_pred             ceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          158 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       158 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      +++++|++++++ ||++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++
T Consensus       157 ~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  235 (373)
T 1p0f_A          157 AVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL  235 (373)
T ss_dssp             SEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             hEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            999999999999 9999999999999988889999999999999999999999999999997899999999999999999


Q ss_pred             CCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      |+++++++++.+.++.+.+++++.+++|+|||++|.+..++.++++++++ |++
T Consensus       236 Ga~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~i  289 (373)
T 1p0f_A          236 GATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVT  289 (373)
T ss_dssp             TCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEE
T ss_pred             CCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEE
Confidence            99999988632256888899888779999999999988899999999999 986

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=2.2e-50  Score=371.87  Aligned_cols=283  Identities=47%  Similarity=0.856  Sum_probs=242.8

Q ss_pred             CCcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCC
Q 022819            7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      ++.+++|||+++.+++++++++++|.|+|+++||||||++++||++|++.+.|..  .+|.++|||++|+|+++|+++++
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~P~v~GhE~~G~V~~vG~~v~~   82 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVTN   82 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCCCCCCCCcccCccccEEEEEECCCCcc
Confidence            4567899999999998779999999999999999999999999999999988752  47899999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCcccccc----cc-ccccccCCcccceeccCCccccccCccceeeEEEeeccce
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG----LE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA  159 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~----~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  159 (291)
                      |++||||++.+..+|+.|.+|++++++.|+...    +. ..|.. .+|..++..+|...+++...|+|+||+.++.+++
T Consensus        83 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  161 (376)
T 1e3i_A           83 FKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELM-EDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (376)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             CCCCCEEEECCcCCCCCCccccCCCcccCcCcCcccccccccccc-ccCccccccCCcccccccCCccceeEEEeccccE
Confidence            999999999999999999999999999998754    10 01221 1221111111111112222369999999999999


Q ss_pred             EECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          160 VKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       160 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +++|+++++++||++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+
T Consensus       162 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa  241 (376)
T 1e3i_A          162 ARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA  241 (376)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence            99999999999999999999999998888999999999999999999999999999999789999999999999999999


Q ss_pred             ceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          240 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       240 ~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      +.++|+++.+.++.+.+++++.+++|+|||++|.+..++.++++++++ |++
T Consensus       242 ~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~i  293 (376)
T 1e3i_A          242 TDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSC  293 (376)
T ss_dssp             SEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEE
T ss_pred             cEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEE
Confidence            999988632256888888888779999999999988899999999999 986

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=7.5e-50  Score=368.01  Aligned_cols=282  Identities=47%  Similarity=0.839  Sum_probs=242.7

Q ss_pred             CcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCC
Q 022819            8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      ..+++|||+++.+++++++++++|.|+|+++||||||++++||++|++++.|..  .+|.++|||++|+|+++|+++++|
T Consensus         4 ~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~P~v~GhE~~G~V~~vG~~v~~~   83 (374)
T 2jhf_A            4 GKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTV   83 (374)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCSSBCCCCSEEEEEEEECTTCCSC
T ss_pred             CCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCCCCcccCcCceEEEEEECCCCCCC
Confidence            356899999999998789999999999999999999999999999999998865  368999999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccc-cccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      ++||||++.+..+|+.|.+|++++++.|+...... .|+. .+|..++..+|...+++...|+|+||+.++.++++++|+
T Consensus        84 ~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~  162 (374)
T 2jhf_A           84 RPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDA  162 (374)
T ss_dssp             CTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccc-cCCcccccccccccccccCCccCeeEEEEchHHeEECCC
Confidence            99999999999999999999999999999764321 1322 122111111111111222347999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++++++||++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.++|
T Consensus       163 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~  242 (374)
T 2jhf_A          163 ASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN  242 (374)
T ss_dssp             TCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEEC
T ss_pred             CCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEec
Confidence            99999999999999999999888899999999999999999999999999999878999999999999999999999998


Q ss_pred             CCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      +++...++.+.+++++.+++|+|||++|.+..++.++++++++ |++
T Consensus       243 ~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~i  289 (374)
T 2jhf_A          243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVS  289 (374)
T ss_dssp             GGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEE
T ss_pred             ccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEE
Confidence            8632246788888888779999999999988899999999999 986

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.6e-50  Score=368.84  Aligned_cols=283  Identities=49%  Similarity=0.910  Sum_probs=243.7

Q ss_pred             CCcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhh-hhcccC--CCCcccCcceeEEEEEcCCCCC
Q 022819            7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT-AWETQA--IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~-~~~g~~--~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      +..+++|||+++.+++++++++++|.|+|+++||||||.+++||++|++ .+.|..  .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~P~v~GhE~~G~V~~vG~~V~   82 (374)
T 1cdo_A            3 VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVT   82 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTCC
T ss_pred             CCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCCCCCCcccCccceEEEEEECCCCc
Confidence            3466899999999998789999999999999999999999999999999 888864  5789999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccc-cccccCCcccceeccCCccccccCccceeeEEEeeccceEEC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  162 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  162 (291)
                      +|++||||++.+..+|+.|.+|++++++.|+...... .|+. .+|..++..+|...+++...|+|+||+.++.++++++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~  161 (374)
T 1cdo_A           83 EFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKI  161 (374)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccc-cCCccccccCCcccccccCCccceeEEEEchhheEEC
Confidence            9999999999999999999999999999998764311 1322 2222122111211122223469999999999999999


Q ss_pred             CCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          163 SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       163 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      |+++++++||++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.+
T Consensus       162 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v  241 (374)
T 1cdo_A          162 DPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDF  241 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEE
T ss_pred             CCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceE
Confidence            99999999999999999999998888999999999999999999999999999999789999999999999999999999


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      +++++.+.++.+.+++++.+++|+|||++|.+..++.++++++++ |++
T Consensus       242 i~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~i  290 (374)
T 1cdo_A          242 VNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVS  290 (374)
T ss_dssp             ECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEE
T ss_pred             EeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEE
Confidence            988632246888888888779999999999978899999999999 986

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=3.3e-50  Score=370.22  Aligned_cols=281  Identities=48%  Similarity=0.904  Sum_probs=242.4

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      .+++|||+++.+++++++++++|.|+|+++||||||++++||++|++++.|..   .+|.++|||++|+|+++|+++++|
T Consensus         3 ~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   82 (373)
T 2fzw_A            3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKL   82 (373)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             CccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            56899999999998789999999999999999999999999999999998865   468999999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccc-cccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      ++||||++.+..+|+.|.+|++++++.|+...... .|.. .+|..++..+|...+++...|+|+||+.++.++++++|+
T Consensus        83 ~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~  161 (373)
T 2fzw_A           83 KAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDP  161 (373)
T ss_dssp             CTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccc-cCCcccccccccccccccCCccceeEEEEchhheEECCC
Confidence            99999999999999999999999999998753210 1221 122111111121112222347999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++++++||++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.+++
T Consensus       162 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~  241 (373)
T 2fzw_A          162 LAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN  241 (373)
T ss_dssp             TSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEEC
T ss_pred             CCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEec
Confidence            99999999999999999999888899999999999999999999999999999878999999999999999999999998


Q ss_pred             CCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      +++.+.++.+.+++++.+++|+|||++|.+..++.++++++++ |++
T Consensus       242 ~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~i  288 (373)
T 2fzw_A          242 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVS  288 (373)
T ss_dssp             GGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEE
T ss_pred             cccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEE
Confidence            8632256888888888779999999999988899999999999 986

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.6e-49  Score=364.00  Aligned_cols=276  Identities=32%  Similarity=0.554  Sum_probs=237.5

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      ++|||+++.+++++++++++|.|+|+++||||||++++||++|++++.|.+  .+|.++|||++|+|+++|+++++|++|
T Consensus         5 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~P~v~GhE~~G~V~~vG~~v~~~~~G   84 (371)
T 1f8f_A            5 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVG   84 (371)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             ccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCCCCCCcccCcccceEEEEeCCCCCCCCCC
Confidence            579999999998779999999999999999999999999999999998865  578999999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCcccccccccc-ccccCCccccee-ccCCcc-ccccCccceeeEEEeeccceEECCCC
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR-GVMHSDQQTRFS-IKGKPV-YHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~-g~~~~~g~~~~~-~~~~~~-~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      |||++.+ .+|+.|.+|++++++.|+......+ |.. .+|..++. .+|... .+....|+|+||+.++.++++++|++
T Consensus        85 drV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~~  162 (371)
T 1f8f_A           85 DHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKD  162 (371)
T ss_dssp             CEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTT
T ss_pred             CEEEecC-CCCCCChhhhCcCcccccccccccccccc-ccccccccccCCccccccccCCccccCeEEechhheEECCCC
Confidence            9999999 9999999999999999987542111 110 11111110 000000 00112369999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++++||.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.++++
T Consensus       163 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~  242 (371)
T 1f8f_A          163 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS  242 (371)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecC
Confidence            99999999999999999998888999999999999999999999999999999779999999999999999999999998


Q ss_pred             CCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++  .++.+.+++++.+++|+|||++|.+..++.++++|+++|++
T Consensus       243 ~~--~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~i  285 (371)
T 1f8f_A          243 KT--QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKI  285 (371)
T ss_dssp             TT--SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEE
T ss_pred             Cc--cCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            75  67888888888779999999999988899999999999986

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=3e-49  Score=363.64  Aligned_cols=257  Identities=25%  Similarity=0.386  Sum_probs=235.5

Q ss_pred             CcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCC
Q 022819            8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      .++.+|||+++.+++. ++++++|.|+|+++||+|||.+++||++|++.+.|.+  .+|.++|||++|+|+++|+++++|
T Consensus        19 ~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~p~v~G~e~~G~V~~vG~~v~~~   97 (370)
T 4ej6_A           19 YFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTPPVTLGHEFCGIVVEAGSAVRDI   97 (370)
T ss_dssp             --CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSEECCCSEEEEEEEECTTCCSS
T ss_pred             ccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCCCCCCeecCcceEEEEEEECCCCCCC
Confidence            4678899999999864 9999999999999999999999999999999999876  678999999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||||++.+..+|+.|.+|.+++++.|+....  .|.. .+                  |+|+||+.++.+.++++|++
T Consensus        98 ~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~~P~~  156 (370)
T 4ej6_A           98 APGARITGDPNISCGRCPQCQAGRVNLCRNLRA--IGIH-RD------------------GGFAEYVLVPRKQAFEIPLT  156 (370)
T ss_dssp             CTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEEEGGGEEEECTT
T ss_pred             CCCCEEEECCCCCCCCChHHhCcCcccCCCccc--cCCC-CC------------------CcceEEEEEchhhEEECCCC
Confidence            999999999999999999999999999998765  3433 23                  49999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++++|| +..++.+||+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.++|+
T Consensus       157 ~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~  234 (370)
T 4ej6_A          157 LDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDP  234 (370)
T ss_dssp             SCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECT
T ss_pred             CCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECC
Confidence            9999998 555899999986 88999999999999999999999999999999889999999999999999999999998


Q ss_pred             CCCCchHHHHHHH---HhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKR---ITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~---~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++  .++.+.+++   ++++++|+|||++|....++.++++|+++|++
T Consensus       235 ~~--~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~v  280 (370)
T 4ej6_A          235 SA--GDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTV  280 (370)
T ss_dssp             TS--SCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEE
T ss_pred             CC--cCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence            76  778888888   77779999999999888899999999999986

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=7e-49  Score=357.05  Aligned_cols=253  Identities=26%  Similarity=0.420  Sum_probs=232.9

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      +|||+++.+++++++++++|.|+|+++||||||++++||++|++.+.|.+    .+|.++|||++|+|+++|+++++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            58999999998889999999999999999999999999999999998875    47899999999999999999999999


Q ss_pred             CCEE-EeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           88 GEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        88 GdrV-~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      |||| +.++..+|+.|.+|.+++++.|+....  .|+. .+                  |+|+||+.++.++++++|+++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP~~~  140 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN--TGYS-VN------------------GGYGEYVVADPNYVGLLPDKV  140 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEECTTTSEECCTTS
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc--cCCC-CC------------------CcceeEEEechHHEEECCCCC
Confidence            9999 456778999999999999999998765  3332 23                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++||.+++.+.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.++|++
T Consensus       141 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~  218 (340)
T 3s2e_A          141 GFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNAR  218 (340)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             CHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence            9999999999999999987 77799999999999999999999999999999 999999999999999999999999987


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .++.+.+++ +.+++|++||++|....++.++++++++|++
T Consensus       219 ~--~~~~~~~~~-~~g~~d~vid~~g~~~~~~~~~~~l~~~G~i  259 (340)
T 3s2e_A          219 D--TDPAAWLQK-EIGGAHGVLVTAVSPKAFSQAIGMVRRGGTI  259 (340)
T ss_dssp             T--SCHHHHHHH-HHSSEEEEEESSCCHHHHHHHHHHEEEEEEE
T ss_pred             C--cCHHHHHHH-hCCCCCEEEEeCCCHHHHHHHHHHhccCCEE
Confidence            6  778888888 4458999999999888999999999999986

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=2e-48  Score=357.09  Aligned_cols=257  Identities=23%  Similarity=0.319  Sum_probs=229.6

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecC--------CCCCCcEEEEEeEeeCChhhhhhhccc----C--CCCcccCcceeEE
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVN--------PPQPEEIRIKVVCTSLCRSDITAWETQ----A--IFPRIFGHEASGI   74 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~~~eVlVkv~~~~i~~~D~~~~~g~----~--~~p~~~G~e~~G~   74 (291)
                      ++++|||+++.+++. ++++++|.|        +|+++||||||.+++||++|++.+.+.    .  .+|.++|||++|+
T Consensus         5 ~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~   83 (363)
T 3m6i_A            5 ASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGE   83 (363)
T ss_dssp             CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEE
T ss_pred             CcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEE
Confidence            567899999998865 999999999        999999999999999999999988732    1  5689999999999


Q ss_pred             EEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEe
Q 022819           75 VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV  154 (291)
Q Consensus        75 V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  154 (291)
                      |+++|+++++|++||||++.+..+|+.|.+|.+++++.|+...+  .|....+                  |+|+||+.+
T Consensus        84 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~--~g~~~~~------------------G~~aey~~v  143 (363)
T 3m6i_A           84 VIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF--LSTPPVP------------------GLLRRYVNH  143 (363)
T ss_dssp             EEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE--TTSTTSC------------------CSCBSEEEE
T ss_pred             EEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc--cCCCCCC------------------ccceeEEEE
Confidence            99999999999999999999999999999999999999998765  3332222                  499999999


Q ss_pred             eccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          155 HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       155 ~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      +.++++++|+ +++++||++. ++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+++|++++++++|++++
T Consensus       144 ~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a  220 (363)
T 3m6i_A          144 PAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFA  220 (363)
T ss_dssp             EGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH
T ss_pred             ehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            9999999999 9999999885 788999987 889999999999999999999999999999995699999999999999


Q ss_pred             HHcCCceEeCCC---CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          235 KAFGVTEFLNPN---DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       235 ~~~g~~~~i~~~---~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++ ++.+++++   ....++.+.+++++++ ++|+|||++|++..++.++++|+++|++
T Consensus       221 ~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~i  279 (363)
T 3m6i_A          221 KEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKV  279 (363)
T ss_dssp             HHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             HHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEE
Confidence            999 76655443   1236788899999987 9999999999987899999999999986

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=4.8e-48  Score=352.25  Aligned_cols=255  Identities=28%  Similarity=0.388  Sum_probs=230.5

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-----CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-----IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      |||+++.+++++++++++|.|+|+++||||||++++||++|++.+.|..     .+|.++|||++|+|+++|+++++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            7999999999889999999999999999999999999999999998763     57889999999999999999999999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCcccccccc-c--cccccCCcccceeccCCccccccCccceeeEEEee-ccceEECC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-R--RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKVS  163 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~--~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ip  163 (291)
                      ||||++.+..+|+.|.+|.++++++|...... .  .|.. .                  .|+|+||+.++ .+.++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~-~------------------~G~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLG-S------------------PGSMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTT-B------------------CCSSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcC-C------------------CceeeEEEEecchhceEeCC
Confidence            99999999999999999999999999432211 0  1111 1                  25999999999 99999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHh-hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWN-VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      + +++++||.+++++.|||+++.+ ..+++++++|||+|+|++|++++|+|+.+|..+|++++++++|+++++++|++.+
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~  220 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAA  220 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence            9 9999999999999999999877 4589999999999999999999999999954499999999999999999999999


Q ss_pred             eCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++   .++.+.+++++++ ++|+|||++|++..++.++++|+++|++
T Consensus       221 i~~~---~~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~i  266 (345)
T 3jv7_A          221 VKSG---AGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHI  266 (345)
T ss_dssp             EECS---TTHHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEE
T ss_pred             EcCC---CcHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            9885   3788889999988 9999999999987999999999999986

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1.4e-47  Score=349.06  Aligned_cols=252  Identities=27%  Similarity=0.439  Sum_probs=229.5

Q ss_pred             eeEEEEecCCCCeEEEEeecCC-CCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNP-PQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~-~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++++++. ++++|+|+|+ ++||||||||.+++||++|++.+.|..  .+|+++|||++|+|+++|+++++|++||
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~~~P~i~G~E~~G~V~~vG~~V~~~~~Gd   79 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGD   79 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSSSSSBCCCCEEEEEEEEECTTCCSCCTTC
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCCCCCccccEEEEEEEEEECCCcccccCCC
Confidence            79999999986 9999999998 579999999999999999999887766  7799999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChh
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE  169 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  169 (291)
                      ||++.+...|+.|..|..+++++|....+  .|.. .+                  |+|+||+.++.++++++|++++++
T Consensus        80 rV~~~~~~~~g~c~~c~~g~~~~c~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP~~l~~~  138 (346)
T 4a2c_A           80 AVACVPLLPCFTCPECLKGFYSQCAKYDF--IGSR-RD------------------GGFAEYIVVKRKNVFALPTDMPIE  138 (346)
T ss_dssp             EEEECCEECCSCSHHHHTTCGGGCSSCEE--BTTT-BC------------------CSSBSEEEEEGGGEEECCTTSCGG
T ss_pred             eEEeeeccCCCCcccccCCccccCCCccc--ccCC-CC------------------cccccccccchheEEECCCCCCHH
Confidence            99999999999999999999999998776  3332 33                  499999999999999999999999


Q ss_pred             hhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 022819          170 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       170 ~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      +||+++ .+.+++ .+.+..+++++++|||+|+|++|++++|+|+.+|+..+++++++++|+++++++|+++++|+++  
T Consensus       139 ~aa~l~-~~~~~~-~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~--  214 (346)
T 4a2c_A          139 DGAFIE-PITVGL-HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE--  214 (346)
T ss_dssp             GGGGHH-HHHHHH-HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT--
T ss_pred             HHHhch-HHHHHH-HHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC--
Confidence            999876 444444 4678899999999999999999999999999999978899999999999999999999999986  


Q ss_pred             chHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+..+.+++++.+ ++|+|||++|.+..++.++++++++|++
T Consensus       215 ~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~  256 (346)
T 4a2c_A          215 MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQL  256 (346)
T ss_dssp             SCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTTCEE
T ss_pred             CCHHHHHHhhcccCCcccccccccccchhhhhhheecCCeEE
Confidence            7778888888887 9999999999988999999999999986

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=8.1e-48  Score=352.29  Aligned_cols=257  Identities=23%  Similarity=0.375  Sum_probs=229.3

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc------CCCCcccCcceeEEEEEcCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ------AIFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~------~~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      ++|||+++.+++. ++++++|.|+|+++||||||.+++||++|++.+.+.      ..+|.++|||++|+|+++|+++++
T Consensus         6 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~   84 (356)
T 1pl8_A            6 PNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (356)
T ss_dssp             CCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             cCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCC
Confidence            5689999999864 999999999999999999999999999999988742      146899999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      |++||||++.+..+|+.|.+|.+++++.|+...+  .|....+                  |+|+||+.++.++++++|+
T Consensus        85 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~~~~------------------G~~aey~~v~~~~~~~iP~  144 (356)
T 1pl8_A           85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF--CATPPDD------------------GNLCRFYKHNAAFCYKLPD  144 (356)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE--TTBTTBC------------------CSCBSEEEEEGGGEEECCT
T ss_pred             CCCCCEEEEeccCCCCCChHHHCcCcccCCCccc--cCcCCCC------------------CccccEEEeehHHEEECcC
Confidence            9999999999999999999999999999998654  3322122                  4999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++++++|+++. ++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.+++
T Consensus       145 ~l~~~~aa~~~-~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~  222 (356)
T 1pl8_A          145 NVTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQ  222 (356)
T ss_dssp             TSCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             CCCHHHHHhhc-hHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEc
Confidence            99999998764 788999987 7889999999999999999999999999999978999999999999999999999998


Q ss_pred             CCCC-CchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDN-NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~-~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.. ..++.+.+++.+++++|+|||++|.+..++.++++|+++|++
T Consensus       223 ~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~i  269 (356)
T 1pl8_A          223 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTL  269 (356)
T ss_dssp             CSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             CcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEE
Confidence            8621 156777888877668999999999977899999999999986

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=9.4e-48  Score=350.76  Aligned_cols=254  Identities=31%  Similarity=0.437  Sum_probs=220.3

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcc-c-----CCCCcccCcceeEEEEEcCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET-Q-----AIFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g-~-----~~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      ++|||+++.+++.+++++++|.|+|+++||||||.+++||++|++.+.| .     ..+|.++|||++|+|+++|+++++
T Consensus         3 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   82 (348)
T 2d8a_A            3 EKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEG   82 (348)
T ss_dssp             CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCc
Confidence            3589999999985699999999999999999999999999999999988 3     257899999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      |++||||++.+..+|+.|.+|.+++++.|+...+  .|.. .+                  |+|+||+.++.++++++|+
T Consensus        83 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP~  141 (348)
T 2d8a_A           83 IEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI--FGVD-TD------------------GVFAEYAVVPAQNIWKNPK  141 (348)
T ss_dssp             CCTTCEEEECCEECCSCCC------------CEE--TTTS-SC------------------CSSBSEEEEEGGGEEECCT
T ss_pred             CCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe--ecCC-CC------------------CcCcceEEeChHHeEECCC
Confidence            9999999999999999999999999999997654  3322 22                  4999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++++++||++. ++.|||+++ +..++ ++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.+++
T Consensus       142 ~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~  218 (348)
T 2d8a_A          142 SIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVIN  218 (348)
T ss_dssp             TSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEEC
T ss_pred             CCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEC
Confidence            99999999886 788999987 77888 9999999999999999999999999878999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++  .++.+.+++++.+ ++|+|||++|.+..++.++++++++|++
T Consensus       219 ~~~--~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~i  263 (348)
T 2d8a_A          219 PFE--EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRV  263 (348)
T ss_dssp             TTT--SCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEE
T ss_pred             CCC--cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            876  6788889998887 8999999999988899999999999986

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=4.1e-48  Score=353.66  Aligned_cols=255  Identities=25%  Similarity=0.368  Sum_probs=231.6

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhh-hhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT-AWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~-~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++.++++ ++++++|.|+|+++||+|||++++||++|++ ++.|..  .+|.++|||++|+|+++|+++++|++||
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGd   79 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGD   79 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCCCSSEECCCEEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCCCCCcccCCcceEEEEEECCCCCcCCCCC
Confidence            79999999987 8999999999999999999999999999999 557765  6789999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccccCccceeeEEEeecc--ceEECCCCC
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIA  166 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~  166 (291)
                      ||++.+..+|+.|.+|.+++++.|...... ..|..                   ..|+|+||+.++..  +++++|+++
T Consensus        80 rV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~-------------------~~G~~aey~~v~~~~~~~~~iP~~~  140 (352)
T 3fpc_A           80 RVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNV-------------------KDGVFGEFFHVNDADMNLAHLPKEI  140 (352)
T ss_dssp             EEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTT-------------------BCCSSBSCEEESSHHHHCEECCTTS
T ss_pred             EEEEccccCCCCchhhcCCCcCCccccccccccccC-------------------CCCcccceEEeccccCeEEECCCCC
Confidence            999999999999999999998888754310 11111                   12599999999975  999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++|++++.++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++++++++
T Consensus       141 ~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~  219 (352)
T 3fpc_A          141 PLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYK  219 (352)
T ss_dssp             CHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGG
T ss_pred             CHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCC
Confidence            9999999988999999986 889999999999999999999999999999997899999999999999999999999987


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .++.+.+++++++ ++|+|||++|++..++.++++|+++|++
T Consensus       220 ~--~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~  262 (352)
T 3fpc_A          220 N--GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDI  262 (352)
T ss_dssp             G--SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEE
T ss_pred             C--cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEE
Confidence            6  7889999999988 9999999999988899999999999986

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.2e-48  Score=353.48  Aligned_cols=254  Identities=22%  Similarity=0.357  Sum_probs=226.9

Q ss_pred             ceeeeEEEEecCCCCeEEEEeecCC-CCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCC
Q 022819           10 VITCKAAVAWGAGQPLVVEEVEVNP-PQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGV   82 (291)
Q Consensus        10 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~   82 (291)
                      +.+|||+++.+++.+++++++|.|+ |+++||||||.+++||++|++.+.|.+      .+|.++|||++|+|+++|+++
T Consensus        13 ~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v   92 (359)
T 1h2b_A           13 VERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGV   92 (359)
T ss_dssp             ----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTC
T ss_pred             hhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCCC
Confidence            5679999999998779999999999 999999999999999999999988753      468999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEEC
Q 022819           83 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  162 (291)
Q Consensus        83 ~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  162 (291)
                      ++|++||||+.++..+|+.|.+|++++++.|++...  .|+. .+                  |+|+||+.++.++++++
T Consensus        93 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~--~G~~-~~------------------G~~aey~~v~~~~~~~i  151 (359)
T 1h2b_A           93 EGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF--PGLN-ID------------------GGFAEFMRTSHRSVIKL  151 (359)
T ss_dssp             CSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC--BTTT-BC------------------CSSBSEEEECGGGEEEC
T ss_pred             CCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc--cccC-CC------------------CcccceEEechHhEEEC
Confidence            999999999999999999999999999999997654  3432 22                  49999999999999999


Q ss_pred             CCCCChhhhh---hhhhhhhhhHhHHHhh-cCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHc
Q 022819          163 SSIAPLEKIC---LLSCGLSAGLGAAWNV-ADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       163 p~~~~~~~aa---~~~~~~~ta~~~l~~~-~~~~~~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      |+++++++||   .+++++.|||+++.+. .+++++++|||+|+|++|++++|+|+.+ |+ +|++++++++|+++++++
T Consensus       152 P~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~l  230 (359)
T 1h2b_A          152 PKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAERL  230 (359)
T ss_dssp             CTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHHT
T ss_pred             CCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHh
Confidence            9999999999   6888889999987665 8999999999999999999999999999 99 899999999999999999


Q ss_pred             CCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChH--HHHHHHHhhccCccc
Q 022819          238 GVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTG--MITTALQSCCDVRSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~--~~~~~~~~l~~~G~i  290 (291)
                      |+++++|+++  . +.+.+++++.+ ++|+|||++|++.  .++.++++  ++|++
T Consensus       231 Ga~~vi~~~~--~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~  281 (359)
T 1h2b_A          231 GADHVVDARR--D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRL  281 (359)
T ss_dssp             TCSEEEETTS--C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEE
T ss_pred             CCCEEEeccc--h-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEE
Confidence            9999999875  5 88888998887 8999999999976  78888777  77764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-47  Score=349.52  Aligned_cols=256  Identities=27%  Similarity=0.416  Sum_probs=226.2

Q ss_pred             ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcc-cC-----CCCcccCcceeEEEEEcCCCCC
Q 022819           10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET-QA-----IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g-~~-----~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      +++|||+++.+++. ++++++|.|+|+++||||||++++||++|++.+.+ ..     .+|.++|||++|+|+++|++++
T Consensus         2 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   80 (352)
T 1e3j_A            2 ASDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   80 (352)
T ss_dssp             --CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             cccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence            35689999999864 99999999999999999999999999999998873 22     4689999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      +|++||||++.+..+|+.|.+|.+++++.|+...+  .|....+                  |+|+||+.++.++++++|
T Consensus        81 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~~~~------------------G~~aey~~v~~~~~~~iP  140 (352)
T 1e3j_A           81 HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF--CATPPDD------------------GNLARYYVHAADFCHKLP  140 (352)
T ss_dssp             SCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE--TTBTTBC------------------CSCBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc--cCcCCCC------------------ccceeEEEeChHHeEECc
Confidence            99999999999999999999999999999998654  3322112                  499999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      +++++++||++. ++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.++
T Consensus       141 ~~~~~~~aa~~~-~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~  217 (352)
T 1e3j_A          141 DNVSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTL  217 (352)
T ss_dssp             TTSCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEE
T ss_pred             CCCCHHHHHhhc-hHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEE
Confidence            999999999764 788999987 78899999999999999999999999999999 799999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHHhc---C-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNNEPVQQVIKRITD---G-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~---g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++ ..++.+.+++.+.   + ++|+|||++|.+..++.++++++++|++
T Consensus       218 ~~~~-~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~i  267 (352)
T 1e3j_A          218 VVDP-AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTL  267 (352)
T ss_dssp             ECCT-TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             cCcc-cccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            8762 1455667777775   4 8999999999977899999999999986

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=1.3e-47  Score=349.76  Aligned_cols=257  Identities=23%  Similarity=0.366  Sum_probs=221.5

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      |+++|||+++.+++++++++++|.|+|+++||||||++++||++|++.+.|..   .+|.++|||++|+|+++|+++++|
T Consensus         1 M~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~   80 (348)
T 3two_A            1 MRVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKF   80 (348)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence            34789999999998889999999999999999999999999999999998875   578999999999999999999999


Q ss_pred             CCCCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           86 NEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        86 ~~GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      ++||||++.+. .+|+.|.+|++++++.|+ ...  .|+. .+.    ..+    ......|+|+||+.++.++++++|+
T Consensus        81 ~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~--~~~~-~~~----~~~----~~~~~~G~~aey~~v~~~~~~~iP~  148 (348)
T 3two_A           81 KIGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV--FTYD-CLD----SFH----DNEPHMGGYSNNIVVDENYVISVDK  148 (348)
T ss_dssp             CTTCEEEECSEEECCSCSHHHHTTCGGGCT-TCE--ESSS-SEE----GGG----TTEECCCSSBSEEEEEGGGCEECCT
T ss_pred             CCCCEEEEeCCcCCCCCChhHhCCCcccCc-ccc--cccc-ccc----ccc----cCCcCCccccceEEechhhEEECCC
Confidence            99999988654 689999999999999998 332  2211 000    000    0001125999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ++++++||.+++.+.|||+++. ..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.++ 
T Consensus       149 ~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-  225 (348)
T 3two_A          149 NAPLEKVAPLLCAGITTYSPLK-FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-  225 (348)
T ss_dssp             TSCHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-
T ss_pred             CCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-
Confidence            9999999999999999999874 5599999999999999999999999999999 999999999999999999999988 


Q ss_pred             CCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.  +.+    .    .++|+|||++|++..++.++++++++|++
T Consensus       226 ~~~--~~~----~----~~~D~vid~~g~~~~~~~~~~~l~~~G~i  261 (348)
T 3two_A          226 TDP--KQC----K----EELDFIISTIPTHYDLKDYLKLLTYNGDL  261 (348)
T ss_dssp             SSG--GGC----C----SCEEEEEECCCSCCCHHHHHTTEEEEEEE
T ss_pred             CCH--HHH----h----cCCCEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            321  211    1    18999999999976899999999999986

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.7e-47  Score=350.16  Aligned_cols=264  Identities=25%  Similarity=0.313  Sum_probs=232.4

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCC--
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVT--   83 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~--   83 (291)
                      +..+|||+++.++++.++++++|.|+|+++||||||.+++||++|++.+.|.+   .+|.++|||++|+|+++| +++  
T Consensus        14 ~~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~   92 (380)
T 1vj0_A           14 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRD   92 (380)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBC
T ss_pred             hhhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccc
Confidence            56889999999998569999999999999999999999999999999998865   468999999999999999 998  


Q ss_pred             ----CCCCCCEEEeecccCCCCCcccc-CCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEe-ecc
Q 022819           84 ----EFNEGEHVLTVFIGECKTCRQCK-SDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV-HSG  157 (291)
Q Consensus        84 ----~~~~GdrV~~~~~~~~~~c~~~~-~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~  157 (291)
                          +|++||||++.+..+|+.|.+|. ++++++|+...+  .|.....+         .  .....|+|+||+.+ +.+
T Consensus        93 ~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~--~g~~~~~~---------~--~~~~~G~~aey~~v~~~~  159 (380)
T 1vj0_A           93 LNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV--YGINRGCS---------E--YPHLRGCYSSHIVLDPET  159 (380)
T ss_dssp             TTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE--TTTTCCSS---------S--TTCCCSSSBSEEEECTTC
T ss_pred             ccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce--eccccccC---------C--CCCCCccccceEEEcccc
Confidence                89999999999999999999999 999999987643  33210000         0  00012599999999 999


Q ss_pred             ceEECCCCCChh-hhhhhhhhhhhhHhHHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          158 CAVKVSSIAPLE-KICLLSCGLSAGLGAAWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       158 ~~~~ip~~~~~~-~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      +++++|++++++ +|+++. ++.|||+++ +..+ ++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++
T Consensus       160 ~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  237 (380)
T 1vj0_A          160 DVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE  237 (380)
T ss_dssp             CEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             eEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence            999999999999 777666 999999987 6678 999999999999999999999999999449999999999999999


Q ss_pred             HcCCceEeCCC---CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          236 AFGVTEFLNPN---DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       236 ~~g~~~~i~~~---~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|++.+++++   +  .++.+.+++++++ ++|+|||++|.+..++.++++|+++|++
T Consensus       238 ~lGa~~vi~~~~~~~--~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~i  294 (380)
T 1vj0_A          238 EIGADLTLNRRETSV--EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFY  294 (380)
T ss_dssp             HTTCSEEEETTTSCH--HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEE
T ss_pred             HcCCcEEEeccccCc--chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            99999999886   4  6788889999887 8999999999877899999999999986

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.1e-46  Score=342.65  Aligned_cols=252  Identities=29%  Similarity=0.411  Sum_probs=228.2

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |||+++.+++.+++++++|.|+|+++||+|||.+++||++|++.+.|.+    .+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            6899999998679999999999999999999999999999999988754    468999999999999999999999999


Q ss_pred             CEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           89 EHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        89 drV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      |||++.+. .+|+.|.+|++++++.|+...+  .|.. .+                  |+|+||+.++.++++++|++++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~~P~~~~  139 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN--AGYS-VD------------------GGYAEYCRAAADYVVKIPDNLS  139 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEEEGGGCEECCTTSC
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce--eecC-CC------------------CcceeeEEechHHEEECCCCCC
Confidence            99998765 4699999999999999987654  3322 22                  4999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      +++||.+++.+.|||+++.+. +++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.++|+++
T Consensus       140 ~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~  217 (339)
T 1rjw_A          140 FEEAAPIFCAGVTTYKALKVT-GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLK  217 (339)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHH-TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTT
T ss_pred             HHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCC
Confidence            999999999999999987554 89999999999998999999999999999 9999999999999999999999998875


Q ss_pred             CCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        .++.+.+++.+ +++|++||++|.+..++.++++++++|++
T Consensus       218 --~~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~  257 (339)
T 1rjw_A          218 --EDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRGGAC  257 (339)
T ss_dssp             --SCHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEEEEE
T ss_pred             --ccHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence              67778888877 68999999999988899999999999986

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=4e-47  Score=345.95  Aligned_cols=252  Identities=29%  Similarity=0.481  Sum_probs=228.7

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.+      .+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            6899999998779999999999999999999999999999999988742      5789999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||||++.+..+|+.|.+|++++++.|+...+  .|.. .+                  |+|+||+.++.++++++|+++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP~~~  139 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI--LGVD-RD------------------GGFAEYVVVPAENAWVNPKDL  139 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEEEGGGEEEECTTS
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce--ecCC-CC------------------CcceeEEEEchHHeEECCCCC
Confidence            99999999999999999999999999998754  3322 22                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++||++. ++.|||+++.+..++ ++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++ ++.+++++
T Consensus       140 ~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~  216 (343)
T 2dq4_A          140 PFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPL  216 (343)
T ss_dssp             CHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTT
T ss_pred             CHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcC
Confidence            999999884 778999987658889 999999999999999999999999987899999999999999999 99999987


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .++.+.+++++++++|+|||++|.+..++.++++++++|++
T Consensus       217 ~--~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~i  258 (343)
T 2dq4_A          217 E--EDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEA  258 (343)
T ss_dssp             T--SCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEEEEE
T ss_pred             c--cCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            6  67888888888339999999999988899999999999986

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=3.9e-46  Score=346.61  Aligned_cols=256  Identities=29%  Similarity=0.398  Sum_probs=225.0

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCC-CCCCcEEEEEeEeeCChhhhhhhccc----------CCCCcccCcceeEEEEEcC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNP-PQPEEIRIKVVCTSLCRSDITAWETQ----------AIFPRIFGHEASGIVESVG   79 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~eVlVkv~~~~i~~~D~~~~~g~----------~~~p~~~G~e~~G~V~~vG   79 (291)
                      .+|++.++++++ .++++++|.|+ |+++||||||.+++||++|++.+.|.          ..+|.++|||++|+|+++|
T Consensus        29 ~~m~a~~~~~~~-~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG  107 (404)
T 3ip1_A           29 LTWLGSKVWRYP-EVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAG  107 (404)
T ss_dssp             BBSCGGGTEEEE-EEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEEC
T ss_pred             hhcceEEEEeCC-ceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEEC
Confidence            344444444443 37899999999 99999999999999999999998753          1578899999999999999


Q ss_pred             CCC------CCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEE
Q 022819           80 PGV------TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTV  153 (291)
Q Consensus        80 ~~~------~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  153 (291)
                      +++      ++|++||||++.+..+|+.|.+|.+++++.|+....  .|+. .+                  |+|+||+.
T Consensus       108 ~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~  166 (404)
T 3ip1_A          108 PEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE--LGFN-VD------------------GAFAEYVK  166 (404)
T ss_dssp             TTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEE
T ss_pred             CCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc--cCCC-CC------------------CCCcceEE
Confidence            999      889999999999999999999999999999998765  3332 23                  49999999


Q ss_pred             eeccceEECCCCCC------hhhhhhhhhhhhhhHhHHHhh-cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          154 VHSGCAVKVSSIAP------LEKICLLSCGLSAGLGAAWNV-ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       154 ~~~~~~~~ip~~~~------~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      ++.+.++++|++++      +.++|+++.++.|||+++... .+++++++|||+|+|++|++++|+|+.+|+.+|+++++
T Consensus       167 v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  246 (404)
T 3ip1_A          167 VDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEP  246 (404)
T ss_dssp             EEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             echHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            99999999999885      456888888999999998655 48999999999999999999999999999989999999


Q ss_pred             ChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCCh-HHHHHHHHhh----ccCccc
Q 022819          227 NPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDT-GMITTALQSC----CDVRSI  290 (291)
Q Consensus       227 ~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~-~~~~~~~~~l----~~~G~i  290 (291)
                      +++|+++++++|++.++++++  .++.+.+++++++ ++|+|||++|++ ..+..++++|    +++|++
T Consensus       247 ~~~~~~~~~~lGa~~vi~~~~--~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~i  314 (404)
T 3ip1_A          247 SEVRRNLAKELGADHVIDPTK--ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATV  314 (404)
T ss_dssp             CHHHHHHHHHHTCSEEECTTT--SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEE
T ss_pred             CHHHHHHHHHcCCCEEEcCCC--CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEE
Confidence            999999999999999999976  7899999999988 999999999996 3677777888    999986

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.5e-46  Score=340.64  Aligned_cols=253  Identities=25%  Similarity=0.425  Sum_probs=230.9

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+++.|  ++++++|.|+|+++||||||.+++||++|++++.|.+    .+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            689999999876  8999999999999999999999999999999998865    4688999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||||++.+..+|+.|.+|++++++.|+...+  .|+. .+                  |+|+||+.++.+.++++|+++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~--~G~~-~~------------------G~~aey~~v~~~~~~~~P~~~  139 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI--LGEH-RH------------------GTYAEYVVLPEANLAPKPKNL  139 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE--TTTS-SC------------------CSSBSEEEEEGGGEEECCTTS
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc--cCcC-CC------------------ccceeEEEeChHHeEECCCCC
Confidence            99999999999999999999999999998764  3332 22                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++++||+++.++.|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++.++|+
T Consensus       140 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~  218 (343)
T 2eih_A          140 SFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNY  218 (343)
T ss_dssp             CHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcC
Confidence            999999999999999999877789999999999998 9999999999999999 99999999999999999999998888


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++  .++.+.+++.+.+ ++|++||++|. ..++.++++++++|++
T Consensus       219 ~~--~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~  261 (343)
T 2eih_A          219 TH--PDWPKEVRRLTGGKGADKVVDHTGA-LYFEGVIKATANGGRI  261 (343)
T ss_dssp             TS--TTHHHHHHHHTTTTCEEEEEESSCS-SSHHHHHHHEEEEEEE
T ss_pred             Cc--ccHHHHHHHHhCCCCceEEEECCCH-HHHHHHHHhhccCCEE
Confidence            75  6778888888876 89999999994 7889999999999986

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=5.6e-46  Score=338.69  Aligned_cols=254  Identities=25%  Similarity=0.345  Sum_probs=230.1

Q ss_pred             eeEEEEecC-CCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGA-GQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~-~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++... ...++++|.|+|+|+||||||||.+++||++|+++++|.+  .+|.++|||++|+|+++|+++++|++||
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~~~p~i~GhE~aG~V~~vG~~V~~~~~Gd   80 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGNKAGTVLGHEGIGIVKEIGADVSSLQVGD   80 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCCCTTCBCCSEEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCCCCCcccceeEEEEEEEECceeeecccCC
Confidence            799998643 3459999999999999999999999999999999999877  7789999999999999999999999999


Q ss_pred             EEEeeccc-CCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           90 HVLTVFIG-ECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        90 rV~~~~~~-~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      ||++.+.. .|+.|.+|..+.++.|.........   .+                  |+|+||+.++.++++++|+++++
T Consensus        81 rV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~------------------G~~ae~~~~~~~~~~~iP~~~~~  139 (348)
T 4eez_A           81 RVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYS---VD------------------GGMAEEAIVVADYAVKVPDGLDP  139 (348)
T ss_dssp             EEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTT---BC------------------CSSBSEEEEEGGGSCBCCTTSCH
T ss_pred             eEeecccccccCccccccCCcccccccccccccc---cC------------------CcceeeccccccceeecCCCCCH
Confidence            99887765 5689999999999999887653322   23                  49999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      ++|+++++.+.|+|.++ +..+++++++|||+|+|++|.+++|+|+.++..+||+++++++|+++++++|++.++|+++ 
T Consensus       140 ~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~-  217 (348)
T 4eez_A          140 IEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD-  217 (348)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C-
T ss_pred             HHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC-
Confidence            99999999999999975 6788999999999999999999999999875559999999999999999999999999987 


Q ss_pred             CchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       .++.+.+++++++ ++|.+++++++...+..++++++++|++
T Consensus       218 -~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~  259 (348)
T 4eez_A          218 -VNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMGKM  259 (348)
T ss_dssp             -CCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEE
T ss_pred             -CCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCCceE
Confidence             7889999999998 9999999999999999999999999985

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-46  Score=337.83  Aligned_cols=258  Identities=24%  Similarity=0.392  Sum_probs=230.3

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      ++.+|||+++.+++.+++++++|.|+|+++||||||.+++||++|++++.|.+    .+|.++|||++|+|+++|+++++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            45679999999998679999999999999999999999999999999988854    46899999999999999999999


Q ss_pred             CCCCCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           85 FNEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        85 ~~~GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      |++||||++.+. .+|+.|.+|++++++.|+....  .|.. .+                  |+|+||+.++.++++++|
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP  140 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL--SGYT-HD------------------GSFQQYATADAVQAAHIP  140 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEEETTTSEEEC
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc--cccC-CC------------------CcceeEEEeccccEEECC
Confidence            999999998765 4699999999999999997654  3322 22                  499999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      +++++++||.+++.+.|||+++.+ .+++++++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++.+
T Consensus       141 ~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~  218 (347)
T 2hcy_A          141 QGTDLAQVAPILCAGITVYKALKS-ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVF  218 (347)
T ss_dssp             TTCCHHHHGGGGTHHHHHHHHHHT-TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEE
T ss_pred             CCCCHHHHHHHhhhHHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceE
Confidence            999999999999999999998754 48999999999998 8999999999999999 99999999999999999999988


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +|+.+ +.++.+.+++.+.+++|++||++|....++.++++|+++|++
T Consensus       219 ~d~~~-~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~i  265 (347)
T 2hcy_A          219 IDFTK-EKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTT  265 (347)
T ss_dssp             EETTT-CSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEE
T ss_pred             EecCc-cHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            88762 256777888877668999999999878899999999999986

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.5e-46  Score=344.06  Aligned_cols=261  Identities=22%  Similarity=0.357  Sum_probs=221.9

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      ..|+|++++..+++++++++++|.|+|+++||||||.+++||++|++.+.|..   .+|.++|||++|+|+++|+++++|
T Consensus        19 ~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   98 (369)
T 1uuf_A           19 AGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKY   98 (369)
T ss_dssp             ----CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             cCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCCC
Confidence            45789999999887789999999999999999999999999999999998864   468999999999999999999999


Q ss_pred             CCCCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           86 NEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        86 ~~GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      ++||||++.+. .+|+.|.+|+++++++|+...+...+.....|             ....|+|+||+.++.++++++|+
T Consensus        99 ~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g-------------~~~~G~~aeyv~v~~~~~~~~P~  165 (369)
T 1uuf_A           99 APGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEP-------------GHTLGGYSQQIVVHERYVLRIRH  165 (369)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTT-------------SBCCCSSBSEEEEEGGGCEECCS
T ss_pred             CCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCC-------------CCCCCcccceEEEcchhEEECCC
Confidence            99999998776 46999999999999999875211110000000             00125999999999999999999


Q ss_pred             C-CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          165 I-APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       165 ~-~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      + +++++||.+++.+.|||+++.+ .+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.++
T Consensus       166 ~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi  243 (369)
T 1uuf_A          166 PQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVV  243 (369)
T ss_dssp             CGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEE
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEe
Confidence            9 9999999999999999998765 589999999999999999999999999999 799999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++  .++.   ++.. +++|+|||++|.+..++.++++++++|++
T Consensus       244 ~~~~--~~~~---~~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~G~i  284 (369)
T 1uuf_A          244 NSRN--ADEM---AAHL-KSFDFILNTVAAPHNLDDFTTLLKRDGTM  284 (369)
T ss_dssp             ETTC--HHHH---HTTT-TCEEEEEECCSSCCCHHHHHTTEEEEEEE
T ss_pred             cccc--HHHH---HHhh-cCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence            8865  4433   3332 58999999999876789999999999986

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=6.1e-47  Score=346.95  Aligned_cols=255  Identities=21%  Similarity=0.266  Sum_probs=223.2

Q ss_pred             cceeeeEEEEecCCCCeEEEE--eecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEE--VEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      ++.+|||+++.+++.++++++  +|.|+|+++||||||++++||++|++.+.|.+   .+|.++|||++|+|+++|++++
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~   82 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence            345799999999986799999  99999999999999999999999999998865   4689999999999999999999


Q ss_pred             -CCCCCCEEEeec-ccCCCCCccccCCCCCccccc--ccccc---ccccCCcccceeccCCccccccCccceeeEEEeec
Q 022819           84 -EFNEGEHVLTVF-IGECKTCRQCKSDKSNTCEVL--GLERR---GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS  156 (291)
Q Consensus        84 -~~~~GdrV~~~~-~~~~~~c~~~~~~~~~~c~~~--~~~~~---g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  156 (291)
                       +|++||||++.+ ..+|+.|.+|++++++.|+..  .+...   |.. .                  .|+|+||+.++.
T Consensus        83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~------------------~G~~aey~~v~~  143 (360)
T 1piw_A           83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYV-S------------------QGGYANYVRVHE  143 (360)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCB-C------------------CCSSBSEEEEEG
T ss_pred             CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCcc-C------------------CCcceeEEEEch
Confidence             999999996554 478999999999999999865  11000   211 1                  259999999999


Q ss_pred             cceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          157 GCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       157 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      ++++++|+++++++||.+++.+.|||+++.+ .+++++++|||+|+|++|++++|+|+.+|+ +|+++++++++++++++
T Consensus       144 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          144 HFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK  221 (360)
T ss_dssp             GGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             hheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            9999999999999999999999999998755 889999999999999999999999999999 89999999999999999


Q ss_pred             cCCceEeCCCCCCc-hHHHHHHHHhcCCccEEEEccCC--hHHHHHHHHhhccCccc
Q 022819          237 FGVTEFLNPNDNNE-PVQQVIKRITDGGADYSFECIGD--TGMITTALQSCCDVRSI  290 (291)
Q Consensus       237 ~g~~~~i~~~~~~~-~~~~~~~~~~~g~~d~vld~~g~--~~~~~~~~~~l~~~G~i  290 (291)
                      +|++.++++++  . ++.+.+.    +++|+|||++|.  +..++.++++++++|++
T Consensus       222 lGa~~v~~~~~--~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~G~i  272 (360)
T 1piw_A          222 MGADHYIATLE--EGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVGGRI  272 (360)
T ss_dssp             HTCSEEEEGGG--TSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEEEEE
T ss_pred             cCCCEEEcCcC--chHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCCCEE
Confidence            99999998864  3 5544433    489999999998  67788999999999986

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.1e-45  Score=336.53  Aligned_cols=250  Identities=26%  Similarity=0.422  Sum_probs=218.6

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      +|||+++.+++++++++++|.|+|+++||||||++++||++|++.+.|.+     .+|.++|||++|+|+++|++ ++|+
T Consensus         3 ~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~~   81 (344)
T 2h6e_A            3 KSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKVK   81 (344)
T ss_dssp             EEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCCC
T ss_pred             eeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCCC
Confidence            58999999998779999999999999999999999999999999998754     36889999999999999999 9999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEee-ccceEECCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKVSSI  165 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ip~~  165 (291)
                      +||||+..+..+|+.|.+|++++++.|+....  .|.. .+                  |+|+||+.++ .++++++ ++
T Consensus        82 ~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~--~G~~-~~------------------G~~aey~~v~~~~~~~~i-~~  139 (344)
T 2h6e_A           82 KGDNVVVYATWGDLTCRYCREGKFNICKNQII--PGQT-TN------------------GGFSEYMLVKSSRWLVKL-NS  139 (344)
T ss_dssp             TTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC--BTTT-BC------------------CSSBSEEEESCGGGEEEE-SS
T ss_pred             CCCEEEECCCCCCCCChhhhCCCcccCCCccc--cccc-cC------------------CcceeeEEecCcccEEEe-CC
Confidence            99999888888999999999999999987643  3432 22                  4999999999 9999999 99


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhh----cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHHcCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNV----ADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~----~~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +++++||.+++++.|||+++.+.    .++ ++++|||+|+|++|++++|+|+.+  |+ +|++++++++++++++++|+
T Consensus       140 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lGa  217 (344)
T 2h6e_A          140 LSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELGA  217 (344)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHTC
T ss_pred             CCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhCC
Confidence            99999999999999999997665    288 999999999999999999999999  99 89999999999999999999


Q ss_pred             ceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          240 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       240 ~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.++++++  .  .+.+++++.+ ++|+|||++|.+..++.++++++++|++
T Consensus       218 ~~vi~~~~--~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~i  265 (344)
T 2h6e_A          218 DYVSEMKD--A--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAI  265 (344)
T ss_dssp             SEEECHHH--H--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEE
T ss_pred             CEEecccc--c--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEE
Confidence            99998642  0  2334566656 8999999999977899999999999986

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=1.5e-45  Score=338.06  Aligned_cols=253  Identities=25%  Similarity=0.263  Sum_probs=223.6

Q ss_pred             CcceeeeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCC
Q 022819            8 PQVITCKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGV   82 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~   82 (291)
                      .++.+|||+++.+++ ++++++++|.|+|+++||||||++++||++|++++.|.+    .+|.++|||++|+|+++|+++
T Consensus        23 ~m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v  102 (363)
T 3uog_A           23 MMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSV  102 (363)
T ss_dssp             CCCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTC
T ss_pred             cCchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCC
Confidence            466789999999764 359999999999999999999999999999999998865    578999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCccccCCCCCccccccc--cccccccCCcccceeccCCccccccCccceeeEEEeeccceE
Q 022819           83 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL--ERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (291)
Q Consensus        83 ~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~--~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  160 (291)
                      ++|++||||++.+..      .|..++ +.|.....  ...|.. .+                  |+|+||+.++.++++
T Consensus       103 ~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~~~  156 (363)
T 3uog_A          103 TRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGA-HP------------------GVLSEYVVLPEGWFV  156 (363)
T ss_dssp             CSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTT-SC------------------CCCBSEEEEEGGGEE
T ss_pred             CCCCCCCEEEEeccc------cccccc-cccccccccccccCcC-CC------------------CcceeEEEechHHeE
Confidence            999999999887554      566677 77864221  112221 22                  499999999999999


Q ss_pred             ECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          161 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       161 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      ++|+++++++||++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++
T Consensus       157 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~  235 (363)
T 3uog_A          157 AAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGAD  235 (363)
T ss_dssp             ECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCS
T ss_pred             ECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCC
Confidence            9999999999999999999999998889999999999999999999999999999999 999999999999999999999


Q ss_pred             eEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          241 EFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       241 ~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++|.+.  .++.+.+++++.+ ++|+|||++|. ..+..++++++++|++
T Consensus       236 ~vi~~~~--~~~~~~v~~~~~g~g~D~vid~~g~-~~~~~~~~~l~~~G~i  283 (363)
T 3uog_A          236 HGINRLE--EDWVERVYALTGDRGADHILEIAGG-AGLGQSLKAVAPDGRI  283 (363)
T ss_dssp             EEEETTT--SCHHHHHHHHHTTCCEEEEEEETTS-SCHHHHHHHEEEEEEE
T ss_pred             EEEcCCc--ccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhhcCCEE
Confidence            9998543  6888999999988 99999999996 6789999999999986

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=3.8e-46  Score=346.02  Aligned_cols=258  Identities=26%  Similarity=0.347  Sum_probs=227.0

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCC-CC-----CcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPP-QP-----EEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~-~~-----~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      +|||+++.+++. ++++++|.|+| ++     +||||||.+++||++|++++.|..  .+|.++|||++|+|+++|++++
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~~~~p~v~GhE~~G~V~~vG~~v~   80 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPKGHVLGHEITGEVVEKGSDVE   80 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSCCCTTCBCCCCEEEEEEEECTTCC
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCcccCCceEEEEEEECCCCC
Confidence            589999999864 99999999998 68     999999999999999999998865  5789999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCcccccccc------ccccccCCcccceeccCCccccccCccceeeEEEeecc
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE------RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG  157 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~------~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  157 (291)
                      +|++||||++.+..+|+.|.+|+++++++|+.....      .+|+. .               ....|+|+||++++.+
T Consensus        81 ~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~-~---------------~~~~G~~aey~~v~~~  144 (398)
T 2dph_A           81 LMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFD-L---------------KGWSGGQAEYVLVPYA  144 (398)
T ss_dssp             SCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTT-B---------------SSCCCSSBSEEEESSH
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccc-c---------------CCCCceeeeeEEeccc
Confidence            999999999999999999999999999999872110      12210 0               0012599999999987


Q ss_pred             --ceEECCCCCChhh----hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 022819          158 --CAVKVSSIAPLEK----ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC  231 (291)
Q Consensus       158 --~~~~ip~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~  231 (291)
                        +++++|+++++++    ||+++.++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++
T Consensus       145 ~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~  223 (398)
T 2dph_A          145 DYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERL  223 (398)
T ss_dssp             HHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHH
T ss_pred             cCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence              8999999999998    888988999999997 788999999999999999999999999999987899999999999


Q ss_pred             HHHHHcCCceEeCCCCCCchH-HHHHHHHhcC-CccEEEEccCChH--------------HHHHHHHhhccCccc
Q 022819          232 EKAKAFGVTEFLNPNDNNEPV-QQVIKRITDG-GADYSFECIGDTG--------------MITTALQSCCDVRSI  290 (291)
Q Consensus       232 ~~a~~~g~~~~i~~~~~~~~~-~~~~~~~~~g-~~d~vld~~g~~~--------------~~~~~~~~l~~~G~i  290 (291)
                      ++++++|++ ++++++  .++ .+.+++++++ ++|+|||++|.+.              .++.++++|+++|++
T Consensus       224 ~~a~~lGa~-~i~~~~--~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~i  295 (398)
T 2dph_A          224 KLLSDAGFE-TIDLRN--SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAI  295 (398)
T ss_dssp             HHHHTTTCE-EEETTS--SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEE
T ss_pred             HHHHHcCCc-EEcCCC--cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEE
Confidence            999999995 888865  554 7888888888 8999999999752              789999999999986

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.6e-46  Score=344.37  Aligned_cols=260  Identities=26%  Similarity=0.380  Sum_probs=226.7

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCCC-CCc------EEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPPQ-PEE------IRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGV   82 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~~-~~e------VlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~   82 (291)
                      +|||+++.+++. ++++++|.|+|+ ++|      |||||.+++||++|++++.|.+  .+|.++|||++|+|+++|+++
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~p~v~GhE~~G~V~~vG~~v   80 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGRDV   80 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCCCTTCBCCCCEEEEEEEECTTC
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCCCCCCcccCcccEEEEEEECCCC
Confidence            589999998864 999999999997 898      9999999999999999998865  568999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCccccCCCCCccccccccc----cccccCCcccceeccCCccccccCccceeeEEEeecc-
Q 022819           83 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER----RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-  157 (291)
Q Consensus        83 ~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~----~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  157 (291)
                      ++|++||||++.+..+|+.|.+|+++++++|+......    +|+...               ....|+|+||++++.+ 
T Consensus        81 ~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------------~~~~G~~aey~~v~~~~  145 (398)
T 1kol_A           81 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM---------------GDWTGGQAEYVLVPYAD  145 (398)
T ss_dssp             CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS---------------CCBCCCSBSEEEESSHH
T ss_pred             CcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC---------------CCCCceeeeEEEecchh
Confidence            99999999999888899999999999999998764211    121100               0012599999999986 


Q ss_pred             -ceEECCCCCChhh----hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 022819          158 -CAVKVSSIAPLEK----ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE  232 (291)
Q Consensus       158 -~~~~ip~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~  232 (291)
                       +++++|+++++++    +++++.++.|||+++. ..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++
T Consensus       146 ~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~  224 (398)
T 1kol_A          146 FNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA  224 (398)
T ss_dssp             HHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CeEEECCCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence             8999999999888    7888889999999974 789999999999999999999999999999978999999999999


Q ss_pred             HHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCCh---------------HHHHHHHHhhccCccc
Q 022819          233 KAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDT---------------GMITTALQSCCDVRSI  290 (291)
Q Consensus       233 ~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~---------------~~~~~~~~~l~~~G~i  290 (291)
                      +++++|++ ++++++ ++++.+.+++++++ ++|+|||++|.+               ..++.++++++++|++
T Consensus       225 ~a~~lGa~-~i~~~~-~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~i  296 (398)
T 1kol_A          225 HAKAQGFE-IADLSL-DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKI  296 (398)
T ss_dssp             HHHHTTCE-EEETTS-SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEE
T ss_pred             HHHHcCCc-EEccCC-cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEE
Confidence            99999997 787764 23478889998887 899999999985               3789999999999986

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=3e-46  Score=342.02  Aligned_cols=250  Identities=19%  Similarity=0.202  Sum_probs=221.3

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CC---CcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IF---PRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~---p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+++++++++++|.|+|+++||||||.+++||++|++++.|.+   .+   |.++|||++| |+++|++ ++|+
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~   78 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE   78 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence            6999999998779999999999999999999999999999999998864   35   8899999999 9999999 9999


Q ss_pred             CCCEEEeecccC--CCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           87 EGEHVLTVFIGE--CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        87 ~GdrV~~~~~~~--~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      +||||++.+..+  |+.|.+|++++++.|+...+...|....+                  |+|+||+.++.++++++|+
T Consensus        79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~------------------G~~aey~~v~~~~~~~iP~  140 (357)
T 2b5w_A           79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAH------------------GYMSEFFTSPEKYLVRIPR  140 (357)
T ss_dssp             TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEEC------------------CSCBSEEEEEGGGEEECCG
T ss_pred             CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCC------------------cceeeEEEEchHHeEECCC
Confidence            999999998888  99999999999999998764211321112                  4999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCC------CEEEEEcCChHHHHH-HHHH-HHcCCCeEEEEcCChh---hHHH
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKG------STVVIFGLGTVGLSV-AQGA-KARGASRIIGVDTNPE---KCEK  233 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~------~~vlV~G~g~~G~~~-i~~a-~~~g~~~vi~~~~~~~---~~~~  233 (291)
                      +++ +.| +++.++.|||+++ +..+++++      ++|||+|+|++|+++ +|+| +.+|+++|++++++++   |+++
T Consensus       141 ~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~  217 (357)
T 2b5w_A          141 SQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDI  217 (357)
T ss_dssp             GGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHH
T ss_pred             Ccc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHH
Confidence            999 654 5667999999987 77889999      999999999999999 9999 9999955999999999   9999


Q ss_pred             HHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          234 AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       234 a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++|++++ ++++  .++.+ ++++ .+++|+|||++|.+..++.++++++++|++
T Consensus       218 ~~~lGa~~v-~~~~--~~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~G~i  269 (357)
T 2b5w_A          218 IEELDATYV-DSRQ--TPVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPNGVG  269 (357)
T ss_dssp             HHHTTCEEE-ETTT--SCGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEEEEE
T ss_pred             HHHcCCccc-CCCc--cCHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcCCEE
Confidence            999999988 8865  56666 7777 558999999999977899999999999986

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=3.6e-45  Score=333.53  Aligned_cols=252  Identities=25%  Similarity=0.382  Sum_probs=228.1

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-----------CCCcccCcceeEEEEEcCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-----------IFPRIFGHEASGIVESVGPG   81 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----------~~p~~~G~e~~G~V~~vG~~   81 (291)
                      |||+++.+++.+++++++|.|+|+++||||||.+++||++|++.+.|.+           .+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            6899999998779999999999999999999999999999999987642           46899999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeec-cceE
Q 022819           82 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS-GCAV  160 (291)
Q Consensus        82 ~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~  160 (291)
                      +++|++||||+.++..+|+.|.+|++++++.|+....  .|+. .+                  |+|+||+.++. ++++
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~--~G~~-~~------------------G~~aey~~v~~~~~~~  139 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW--LGIN-FD------------------GAYAEYVIVPHYKYMY  139 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE--BTTT-BC------------------CSSBSEEEESCGGGEE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc--cccc-CC------------------CcceeEEEecCccceE
Confidence            9999999999988889999999999999999987654  3322 22                  49999999999 9999


Q ss_pred             ECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCC-hHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcC
Q 022819          161 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLG-TVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       161 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g-~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      ++ +++++++|+.+++++.|||+++ +..+++++++|||+|+| ++|++++|+++.+ |+ +|++++++++++++++++|
T Consensus       140 ~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g  216 (347)
T 1jvb_A          140 KL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAG  216 (347)
T ss_dssp             EC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHT
T ss_pred             Ee-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhC
Confidence            99 9999999999999999999987 45889999999999985 9999999999999 99 8999999999999999999


Q ss_pred             CceEeCCCCCCchHHHHHHHHhc-CCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          239 VTEFLNPNDNNEPVQQVIKRITD-GGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       239 ~~~~i~~~~~~~~~~~~~~~~~~-g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.++++++  .++.+.+.+.+. +++|++||++|.+..++.++++++++|++
T Consensus       217 ~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~i  267 (347)
T 1jvb_A          217 ADYVINASM--QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKY  267 (347)
T ss_dssp             CSEEEETTT--SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEE
T ss_pred             CCEEecCCC--ccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            999998875  677777888876 58999999999977899999999999986

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=6.5e-45  Score=333.17  Aligned_cols=260  Identities=22%  Similarity=0.318  Sum_probs=223.4

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      ++|+|++++..++.++++++++|.|+|+++||+|||.+++||++|++.+.|.+   .+|.++|||++|+|+++|+++++|
T Consensus         6 ~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~~   85 (357)
T 2cf5_A            6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_dssp             CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCSC
T ss_pred             CcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence            45789999999887779999999999999999999999999999999998754   468999999999999999999999


Q ss_pred             CCCCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           86 NEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        86 ~~GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      ++||||++.+. .+|+.|.+|.+++++.|+...+...+.. ..|             ....|+|+||+.++.++++++|+
T Consensus        86 ~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~P~  151 (357)
T 2cf5_A           86 TVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVY-ING-------------QPTQGGFAKATVVHQKFVVKIPE  151 (357)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBC-TTS-------------CBCCCSSBSCEEEEGGGEEECCS
T ss_pred             CCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccc-cCC-------------CCCCCccccEEEechhhEEECcC
Confidence            99999987554 5899999999999999975543211110 001             01135999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCC-CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceE
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADIS-KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEF  242 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~  242 (291)
                      ++++++||.+++.+.|||+++. ..+++ ++++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++ ++|++.+
T Consensus       152 ~ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v  229 (357)
T 2cf5_A          152 GMAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADDY  229 (357)
T ss_dssp             SCCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCE
T ss_pred             CCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCcee
Confidence            9999999999999999999864 56788 99999999999999999999999999 9999999999999988 9999999


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++++  .   +.+++.+ +++|+|||++|.+..++.++++++++|++
T Consensus       230 i~~~~--~---~~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~i  271 (357)
T 2cf5_A          230 VIGSD--Q---AKMSELA-DSLDYVIDTVPVHHALEPYLSLLKLDGKL  271 (357)
T ss_dssp             EETTC--H---HHHHHST-TTEEEEEECCCSCCCSHHHHTTEEEEEEE
T ss_pred             ecccc--H---HHHHHhc-CCCCEEEECCCChHHHHHHHHHhccCCEE
Confidence            98864  3   3455554 37999999999866789999999999986

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=2e-44  Score=331.01  Aligned_cols=260  Identities=22%  Similarity=0.350  Sum_probs=221.1

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      .+|++++++..++.++++++++|.|+|+++||+|||.+++||++|++.+.|.+   .+|.++|||++|+|+++|+++++|
T Consensus        13 ~~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   92 (366)
T 1yqd_A           13 HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKV   92 (366)
T ss_dssp             SSEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CCeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcC
Confidence            35777787777766679999999999999999999999999999999998764   478999999999999999999999


Q ss_pred             CCCCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           86 NEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        86 ~~GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      ++||||++.+. .+|+.|.+|+.++++.|+...+...|.. ..|             ....|+|+||+.++.++++++|+
T Consensus        93 ~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~P~  158 (366)
T 1yqd_A           93 NVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIY-HDG-------------TITYGGYSNHMVANERYIIRFPD  158 (366)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBC-TTS-------------CBCCCSSBSEEEEEGGGCEECCT
T ss_pred             CCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccc-cCC-------------CcCCCccccEEEEchhhEEECCC
Confidence            99999987654 5899999999999999965542221110 001             01125999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCC-CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceE
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADIS-KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEF  242 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~  242 (291)
                      ++++++||.+++.+.|||+++. ..+++ ++++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++ ++|++.+
T Consensus       159 ~ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v  236 (366)
T 1yqd_A          159 NMPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSF  236 (366)
T ss_dssp             TSCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEE
T ss_pred             CCCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceE
Confidence            9999999999999999999865 45777 99999999999999999999999999 9999999999999887 8999999


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++++  .   +.+++.+ +++|+|||++|.+..++.++++++++|++
T Consensus       237 ~~~~~--~---~~~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~G~i  278 (366)
T 1yqd_A          237 LVSRD--Q---EQMQAAA-GTLDGIIDTVSAVHPLLPLFGLLKSHGKL  278 (366)
T ss_dssp             EETTC--H---HHHHHTT-TCEEEEEECCSSCCCSHHHHHHEEEEEEE
T ss_pred             EeccC--H---HHHHHhh-CCCCEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            98864  3   3455554 38999999999866788999999999986

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=2.3e-43  Score=324.51  Aligned_cols=244  Identities=19%  Similarity=0.196  Sum_probs=210.4

Q ss_pred             CCccCCCCcceeeeEEEEecCCCCeEEE-EeecCCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcC
Q 022819            1 MSTSIKQPQVITCKAAVAWGAGQPLVVE-EVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVG   79 (291)
Q Consensus         1 m~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG   79 (291)
                      |+.+.+ +++.+|||+++.++++ ++++ ++|.|+|+++||||||++++||++|++++.+...+|.++|||++|+|+++|
T Consensus         1 ~~~~tm-~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~p~v~G~e~~G~V~~vG   78 (371)
T 3gqv_A            1 MGDQPF-IPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFATPWAFLGTDYAGTVVAVG   78 (371)
T ss_dssp             ---CCC-CCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC-----CCTTSCCCSEEEEEEEEEC
T ss_pred             CCCCCC-CCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcCCCCCccCccccEEEEEEeC
Confidence            555443 3778999999999965 9999 999999999999999999999999999988766789999999999999999


Q ss_pred             CCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccce
Q 022819           80 PGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA  159 (291)
Q Consensus        80 ~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  159 (291)
                      +++++|++||||+..       |..|..+.              . .+                  |+|+||+.++.+++
T Consensus        79 ~~v~~~~~GdrV~~~-------~~~~~~~~--------------~-~~------------------G~~aey~~v~~~~~  118 (371)
T 3gqv_A           79 SDVTHIQVGDRVYGA-------QNEMCPRT--------------P-DQ------------------GAFSQYTVTRGRVW  118 (371)
T ss_dssp             TTCCSCCTTCEEEEE-------CCTTCTTC--------------T-TC------------------CSSBSEEECCTTCE
T ss_pred             CCCCCCCCCCEEEEe-------ccCCCCCC--------------C-CC------------------CcCcCeEEEchhhe
Confidence            999999999999544       33343220              0 22                  49999999999999


Q ss_pred             EECCCCCChhhhhhhhhhhhhhHhHHHhh-cCC-----------CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          160 VKVSSIAPLEKICLLSCGLSAGLGAAWNV-ADI-----------SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       160 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~-~~~-----------~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      +++|+++++++||++++++.|||+++.+. .++           +++++|||+|+ |++|++++|+|+.+|+ +||++. 
T Consensus       119 ~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-  196 (371)
T 3gqv_A          119 AKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-  196 (371)
T ss_dssp             EECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-
T ss_pred             EECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-
Confidence            99999999999999999999999998777 553           89999999998 8999999999999999 899885 


Q ss_pred             ChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhh-ccCccc
Q 022819          227 NPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC-CDVRSI  290 (291)
Q Consensus       227 ~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l-~~~G~i  290 (291)
                      +++|+++++++|+++++|+++  .++.+.+++++++++|+|||++|++..++.++++| +++|++
T Consensus       197 ~~~~~~~~~~lGa~~vi~~~~--~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~i  259 (371)
T 3gqv_A          197 SPHNFDLAKSRGAEEVFDYRA--PNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHY  259 (371)
T ss_dssp             CGGGHHHHHHTTCSEEEETTS--TTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEE
T ss_pred             CHHHHHHHHHcCCcEEEECCC--chHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEE
Confidence            789999999999999999976  78999999999888999999999988899999999 588876

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=6.7e-44  Score=336.46  Aligned_cols=260  Identities=20%  Similarity=0.275  Sum_probs=226.2

Q ss_pred             CcceeeeEEEEecC---------------CCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcc-------------
Q 022819            8 PQVITCKAAVAWGA---------------GQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET-------------   59 (291)
Q Consensus         8 ~~~~~~~a~~~~~~---------------~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g-------------   59 (291)
                      +++.+|||+++.++               .++++++++|.|+|+++||||||.+++||++|++...+             
T Consensus        26 ~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g  105 (456)
T 3krt_A           26 PLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYG  105 (456)
T ss_dssp             CCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHH
T ss_pred             CCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhcc
Confidence            46789999999987               24589999999999999999999999999999865321             


Q ss_pred             -------cCCCC-cccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccc
Q 022819           60 -------QAIFP-RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTR  131 (291)
Q Consensus        60 -------~~~~p-~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~  131 (291)
                             ...+| .++|||++|+|+++|+++++|++||||++.+. .|..|..|..+.++.|+....  +|+...+    
T Consensus       106 ~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~--~G~~~~~----  178 (456)
T 3krt_A          106 RVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI--WGFETNF----  178 (456)
T ss_dssp             TSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE--TTTTSSS----
T ss_pred             ccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc--cccCCCC----
Confidence                   11467 68999999999999999999999999988644 588888888888999987765  4443222    


Q ss_pred             eeccCCccccccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhh--cCCCCCCEEEEEcC-ChHHHH
Q 022819          132 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV--ADISKGSTVVIFGL-GTVGLS  208 (291)
Q Consensus       132 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlV~G~-g~~G~~  208 (291)
                                    |+|+||++++.++++++|+++++++||++++.+.|||+++...  .+++++++|||+|+ |++|++
T Consensus       179 --------------G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~  244 (456)
T 3krt_A          179 --------------GGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSY  244 (456)
T ss_dssp             --------------CSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHH
T ss_pred             --------------CcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHH
Confidence                          4999999999999999999999999999999999999988655  78999999999998 999999


Q ss_pred             HHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC---------------chHHHHHHHHhcC-CccEEEEccC
Q 022819          209 VAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN---------------EPVQQVIKRITDG-GADYSFECIG  272 (291)
Q Consensus       209 ~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~---------------~~~~~~~~~~~~g-~~d~vld~~g  272 (291)
                      ++|+|+.+|+ ++|+++++++|+++++++|++.++++.+.+               ..+.+.+++++++ ++|+|||++|
T Consensus       245 avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G  323 (456)
T 3krt_A          245 ATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG  323 (456)
T ss_dssp             HHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSC
T ss_pred             HHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCC
Confidence            9999999999 888888999999999999999999886521               1345788888887 9999999999


Q ss_pred             ChHHHHHHHHhhccCccc
Q 022819          273 DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       273 ~~~~~~~~~~~l~~~G~i  290 (291)
                      + ..+..++++++++|++
T Consensus       324 ~-~~~~~~~~~l~~~G~i  340 (456)
T 3krt_A          324 R-ETFGASVFVTRKGGTI  340 (456)
T ss_dssp             H-HHHHHHHHHEEEEEEE
T ss_pred             c-hhHHHHHHHhhCCcEE
Confidence            8 7899999999999986

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=1.5e-43  Score=321.97  Aligned_cols=230  Identities=20%  Similarity=0.264  Sum_probs=210.7

Q ss_pred             cceeeeEEEEecCCCC---eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCC
Q 022819            9 QVITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPG   81 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~   81 (291)
                      |+++|||+++.++++|   ++++++|.|+|+++||+|||++++||++|++.+.|.+    .+|.++|||++|+|+++|++
T Consensus         1 M~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~   80 (340)
T 3gms_A            1 MSLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAF   80 (340)
T ss_dssp             -CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTT
T ss_pred             CCcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCC
Confidence            3468999999999988   9999999999999999999999999999999998865    57899999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEE
Q 022819           82 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK  161 (291)
Q Consensus        82 ~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (291)
                      +++|++||||+.+.                              .+                  |+|+||+.++.+++++
T Consensus        81 v~~~~vGdrV~~~~------------------------------~~------------------G~~aey~~v~~~~~~~  112 (340)
T 3gms_A           81 VSRELIGKRVLPLR------------------------------GE------------------GTWQEYVKTSADFVVP  112 (340)
T ss_dssp             SCGGGTTCEEEECS------------------------------SS------------------CSSBSEEEEEGGGEEE
T ss_pred             CCCCCCCCEEEecC------------------------------CC------------------ccceeEEEcCHHHeEE
Confidence            99999999996431                              11                  4999999999999999


Q ss_pred             CCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          162 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       162 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      +|+++++++||++++.++|+|+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|++
T Consensus       113 vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~  191 (340)
T 3gms_A          113 IPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAA  191 (340)
T ss_dssp             CCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS
T ss_pred             CCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999988 5999999999999999 999999999999999999999


Q ss_pred             eEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          241 EFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       241 ~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++|+++  .++.+.+++++.+ ++|++|||+|.+. ...++++|+++|++
T Consensus       192 ~~~~~~~--~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~i  239 (340)
T 3gms_A          192 YVIDTST--APLYETVMELTNGIGADAAIDSIGGPD-GNELAFSLRPNGHF  239 (340)
T ss_dssp             EEEETTT--SCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHHHTEEEEEEE
T ss_pred             EEEeCCc--ccHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHHhcCCCEE
Confidence            9999876  7888999999988 9999999999854 46677999999986

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1.4e-43  Score=333.38  Aligned_cols=262  Identities=18%  Similarity=0.202  Sum_probs=223.9

Q ss_pred             CCCcceeeeEEEEecCC-------------CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhc--------------
Q 022819            6 KQPQVITCKAAVAWGAG-------------QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--------------   58 (291)
Q Consensus         6 ~~~~~~~~~a~~~~~~~-------------~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~--------------   58 (291)
                      ..+++.+|||+++.+++             ++++++++|.|+|+++||||||.+++||++|++...              
T Consensus        18 ~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           18 AAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             HSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             ccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            34678999999999987             349999999999999999999999999999974321              


Q ss_pred             --ccC----CCC-cccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccc
Q 022819           59 --TQA----IFP-RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTR  131 (291)
Q Consensus        59 --g~~----~~p-~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~  131 (291)
                        +.+    .+| .++|||++|+|+++|+++++|++||||++.+...|+.|. |..+.++.|+....  +|+...+    
T Consensus        98 ~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~--~G~~~~~----  170 (447)
T 4a0s_A           98 RQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRA--WGFETNF----  170 (447)
T ss_dssp             TTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEE--TTTTSSS----
T ss_pred             ccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-cccccccccccccc--ccccCCC----
Confidence              111    456 699999999999999999999999999999888887776 44567888987765  4443222    


Q ss_pred             eeccCCccccccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHh--hcCCCCCCEEEEEcC-ChHHHH
Q 022819          132 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN--VADISKGSTVVIFGL-GTVGLS  208 (291)
Q Consensus       132 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~vlV~G~-g~~G~~  208 (291)
                                    |+|+||+.++.++++++|+++++++||++++.+.|||+++.+  ..+++++++|||+|+ |++|++
T Consensus       171 --------------G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~  236 (447)
T 4a0s_A          171 --------------GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSY  236 (447)
T ss_dssp             --------------CSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHH
T ss_pred             --------------CceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHH
Confidence                          499999999999999999999999999999999999998864  488999999999998 999999


Q ss_pred             HHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC----------------chHHHHHHHHhcCCccEEEEccC
Q 022819          209 VAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN----------------EPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       209 ~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~----------------~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      ++|+|+.+|+ ++|+++++++++++++++|++.++++.+.+                ..+.+.+++.+++++|++||++|
T Consensus       237 a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G  315 (447)
T 4a0s_A          237 AIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTG  315 (447)
T ss_dssp             HHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSC
T ss_pred             HHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCC
Confidence            9999999999 888888999999999999999988764311                12367788888449999999999


Q ss_pred             ChHHHHHHHHhhccCccc
Q 022819          273 DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       273 ~~~~~~~~~~~l~~~G~i  290 (291)
                      . ..++.++++++++|++
T Consensus       316 ~-~~~~~~~~~l~~~G~i  332 (447)
T 4a0s_A          316 R-VTFGLSVIVARRGGTV  332 (447)
T ss_dssp             H-HHHHHHHHHSCTTCEE
T ss_pred             c-hHHHHHHHHHhcCCEE
Confidence            8 5789999999999986

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=4.2e-43  Score=319.38  Aligned_cols=231  Identities=22%  Similarity=0.271  Sum_probs=210.4

Q ss_pred             CCCcceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcC
Q 022819            6 KQPQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVG   79 (291)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG   79 (291)
                      +++++.+|||+++.+++.|  ++++++|.|+|++|||||||.+++||++|++.+.|.+    .+|.++|||++|+|+++|
T Consensus        15 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG   94 (342)
T 4eye_A           15 QTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAP   94 (342)
T ss_dssp             ---CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECC
T ss_pred             cccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEEC
Confidence            4567899999999998776  9999999999999999999999999999999998865    578999999999999999


Q ss_pred             CCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccce
Q 022819           80 PGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA  159 (291)
Q Consensus        80 ~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  159 (291)
                      ++++ |++||||+.+..                              +                  |+|+||+.++.+++
T Consensus        95 ~~v~-~~vGDrV~~~~~------------------------------~------------------G~~aey~~v~~~~~  125 (342)
T 4eye_A           95 EGSG-IKPGDRVMAFNF------------------------------I------------------GGYAERVAVAPSNI  125 (342)
T ss_dssp             TTSS-CCTTCEEEEECS------------------------------S------------------CCSBSEEEECGGGE
T ss_pred             CCCC-CCCCCEEEEecC------------------------------C------------------CcceEEEEEcHHHe
Confidence            9999 999999976521                              1                  49999999999999


Q ss_pred             EECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 022819          160 VKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       160 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      +++|+++++++||+++.++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|
T Consensus       126 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g  204 (342)
T 4eye_A          126 LPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVG  204 (342)
T ss_dssp             EECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHT
T ss_pred             EECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcC
Confidence            9999999999999999999999999889999999999999998 9999999999999999 9999999999999999999


Q ss_pred             CceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          239 VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       239 ~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.+++++   .++.+.+++.+++ ++|++|||+|. ..++.++++++++|++
T Consensus       205 a~~v~~~~---~~~~~~v~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~i  253 (342)
T 4eye_A          205 ADIVLPLE---EGWAKAVREATGGAGVDMVVDPIGG-PAFDDAVRTLASEGRL  253 (342)
T ss_dssp             CSEEEESS---TTHHHHHHHHTTTSCEEEEEESCC---CHHHHHHTEEEEEEE
T ss_pred             CcEEecCc---hhHHHHHHHHhCCCCceEEEECCch-hHHHHHHHhhcCCCEE
Confidence            99999876   5788889999888 99999999998 4789999999999986

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=5.8e-43  Score=317.31  Aligned_cols=230  Identities=26%  Similarity=0.332  Sum_probs=212.5

Q ss_pred             CcceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCC
Q 022819            8 PQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      +++.+|||+++.+++++  ++++++|.|+|+++||||||.+++||++|++++.|.+  .+|.++|||++|+|+++|++++
T Consensus         4 ~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~P~i~G~e~~G~V~~vG~~v~   83 (334)
T 3qwb_A            4 TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEKPYVLGREASGTVVAKGKGVT   83 (334)
T ss_dssp             -CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCCCSSEECCSEEEEEEEEECTTCC
T ss_pred             CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCccccceEEEEEEECCCCC
Confidence            36678999999998876  8999999999999999999999999999999998876  5789999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEee-ccceEEC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKV  162 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i  162 (291)
                      +|++||||+...                               +                  |+|++|+.++ .+.++++
T Consensus        84 ~~~~GdrV~~~~-------------------------------~------------------G~~aey~~v~~~~~~~~~  114 (334)
T 3qwb_A           84 NFEVGDQVAYIS-------------------------------N------------------STFAQYSKISSQGPVMKL  114 (334)
T ss_dssp             SCCTTCEEEEEC-------------------------------S------------------SCSBSEEEEETTSSEEEC
T ss_pred             CCCCCCEEEEee-------------------------------C------------------CcceEEEEecCcceEEEC
Confidence            999999997641                               1                  4999999999 9999999


Q ss_pred             CCCCChhh---hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 022819          163 SSIAPLEK---ICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       163 p~~~~~~~---aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G-~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      |+++++++   |+++++.+.|||+++.+..+++++++|||+| +|++|++++|+|+.+|+ +|++++++++++++++++|
T Consensus       115 P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g  193 (334)
T 3qwb_A          115 PKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYG  193 (334)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT
T ss_pred             CCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC
Confidence            99999999   8888889999999988888999999999998 59999999999999999 9999999999999999999


Q ss_pred             CceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          239 VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       239 ~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.++++++  .++.+.+++++.+ ++|++||++|. ..++.++++++++|++
T Consensus       194 a~~~~~~~~--~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~i  243 (334)
T 3qwb_A          194 AEYLINASK--EDILRQVLKFTNGKGVDASFDSVGK-DTFEISLAALKRKGVF  243 (334)
T ss_dssp             CSEEEETTT--SCHHHHHHHHTTTSCEEEEEECCGG-GGHHHHHHHEEEEEEE
T ss_pred             CcEEEeCCC--chHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhccCCEE
Confidence            999999876  7888999999877 99999999998 6889999999999986

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=7.2e-43  Score=319.12  Aligned_cols=231  Identities=22%  Similarity=0.315  Sum_probs=212.0

Q ss_pred             CcceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCC
Q 022819            8 PQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPG   81 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~   81 (291)
                      +++.+|||+++.+++.|  ++++++|.|+|+++||||||.+++||++|++.+.|.+    .+|.++|||++|+|+++|++
T Consensus        24 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~  103 (353)
T 4dup_A           24 SLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPG  103 (353)
T ss_dssp             CCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTT
T ss_pred             CCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCC
Confidence            46788999999998766  9999999999999999999999999999999998876    35889999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEE
Q 022819           82 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK  161 (291)
Q Consensus        82 ~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (291)
                      +++|++||||+...                              .+                  |+|+||+.++.+.+++
T Consensus       104 v~~~~vGdrV~~~~------------------------------~~------------------G~~aey~~v~~~~~~~  135 (353)
T 4dup_A          104 VSGYAVGDKVCGLA------------------------------NG------------------GAYAEYCLLPAGQILP  135 (353)
T ss_dssp             CCSCCTTCEEEEEC------------------------------SS------------------CCSBSEEEEEGGGEEE
T ss_pred             CCCCCCCCEEEEec------------------------------CC------------------CceeeEEEEcHHHcEe
Confidence            99999999996541                              11                  4999999999999999


Q ss_pred             CCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          162 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       162 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G-~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      +|+++++++||+++.++.|||+++.+..+++++++|||+| +|++|++++|+|+.+|+ +|++++++++++++++++|++
T Consensus       136 ~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~  214 (353)
T 4dup_A          136 FPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAK  214 (353)
T ss_dssp             CCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCC
Confidence            9999999999999999999999988999999999999995 59999999999999999 899999999999999999999


Q ss_pred             eEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          241 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       241 ~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++++++  .++.+.+++.+++++|++|||+|+ ..+..++++++++|++
T Consensus       215 ~~~~~~~--~~~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~i  261 (353)
T 4dup_A          215 RGINYRS--EDFAAVIKAETGQGVDIILDMIGA-AYFERNIASLAKDGCL  261 (353)
T ss_dssp             EEEETTT--SCHHHHHHHHHSSCEEEEEESCCG-GGHHHHHHTEEEEEEE
T ss_pred             EEEeCCc--hHHHHHHHHHhCCCceEEEECCCH-HHHHHHHHHhccCCEE
Confidence            9999876  788888998884499999999998 5789999999999986

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.9e-42  Score=315.12  Aligned_cols=231  Identities=22%  Similarity=0.341  Sum_probs=208.1

Q ss_pred             ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-----CCCcccCcceeEEEEEcCCCCCC
Q 022819           10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-----IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      +.+|||+++.+++++++++++|.|+|+++||||||++++||++|++++.|..     .+|.++|||++|+|+++|+++++
T Consensus         5 ~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~   84 (343)
T 3gaz_A            5 TPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDS   84 (343)
T ss_dssp             -CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             chhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCC
Confidence            4679999999999889999999999999999999999999999999988753     57899999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      |++||||+.....                         ....+                  |+|+||+.++.+.++++|+
T Consensus        85 ~~vGdrV~~~~~g-------------------------~~~~~------------------G~~aey~~v~~~~~~~~P~  121 (343)
T 3gaz_A           85 FRVGDAVFGLTGG-------------------------VGGLQ------------------GTHAQFAAVDARLLASKPA  121 (343)
T ss_dssp             CCTTCEEEEECCS-------------------------STTCC------------------CSSBSEEEEEGGGEEECCT
T ss_pred             CCCCCEEEEEeCC-------------------------CCCCC------------------cceeeEEEecHHHeeeCCC
Confidence            9999999764211                         00012                  4999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i  243 (291)
                      ++++++||++++++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|+++ .+++++++++++|++. +
T Consensus       122 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i  198 (343)
T 3gaz_A          122 ALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP-I  198 (343)
T ss_dssp             TSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-E
T ss_pred             CCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-e
Confidence            99999999999999999999889999999999999985 9999999999999999 89999 8899999999999998 7


Q ss_pred             CCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          244 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      + ++  .++.+.+++.+.+ ++|++||++|+ ..+..++++|+++|++
T Consensus       199 ~-~~--~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~i  242 (343)
T 3gaz_A          199 D-AS--REPEDYAAEHTAGQGFDLVYDTLGG-PVLDASFSAVKRFGHV  242 (343)
T ss_dssp             E-TT--SCHHHHHHHHHTTSCEEEEEESSCT-HHHHHHHHHEEEEEEE
T ss_pred             c-cC--CCHHHHHHHHhcCCCceEEEECCCc-HHHHHHHHHHhcCCeE
Confidence            7 43  6788889998887 99999999998 6889999999999986

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.6e-42  Score=315.92  Aligned_cols=231  Identities=26%  Similarity=0.271  Sum_probs=208.1

Q ss_pred             eeeeEEEEecCC-----CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-CCCcccCcceeEEEEEcCCCCCC
Q 022819           11 ITCKAAVAWGAG-----QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        11 ~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      |+|||+++.+++     +.++++++|.|+|+++||||||++++||++|++.+.|.. .+|.++|||++|+|+++|+++++
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~p~i~G~e~~G~V~~vG~~v~~   80 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSKAPRVLGFDAIGVVESVGNEVTM   80 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSCCSSSCBCCCCCEEEEEEEECTTCCS
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCCCCCCCcCcCCccEEEEEEeCCCCCc
Confidence            579999999876     349999999999999999999999999999999988865 68999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      |++||||+.....                           ..+                  |+|+||+.++.++++++|+
T Consensus        81 ~~~GdrV~~~~~~---------------------------~~~------------------G~~aey~~v~~~~~~~iP~  115 (346)
T 3fbg_A           81 FNQGDIVYYSGSP---------------------------DQN------------------GSNAEYQLINERLVAKAPK  115 (346)
T ss_dssp             CCTTCEEEECCCT---------------------------TSC------------------CSSBSEEEEEGGGEEECCS
T ss_pred             CCCCCEEEEcCCC---------------------------CCC------------------cceeEEEEEChHHeEECCC
Confidence            9999999754210                           012                  4999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCC------CCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADIS------KGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~------~~~~vlV~G-~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      ++++++||++++++.|||+++.+..+++      ++++|||+| +|++|++++|+|+.+|+ +|++++++++++++++++
T Consensus       116 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l  194 (346)
T 3fbg_A          116 NISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM  194 (346)
T ss_dssp             SSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH
T ss_pred             CCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc
Confidence            9999999999999999999998999998      999999995 69999999999999999 999999999999999999


Q ss_pred             CCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |++.+++++   +++.+.+++..++++|+||||+|++..++.++++|+++|++
T Consensus       195 Ga~~vi~~~---~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~i  244 (346)
T 3fbg_A          195 GADIVLNHK---ESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHI  244 (346)
T ss_dssp             TCSEEECTT---SCHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEE
T ss_pred             CCcEEEECC---ccHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEE
Confidence            999999986   35778888874449999999999987889999999999986

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=2.3e-42  Score=312.28  Aligned_cols=227  Identities=26%  Similarity=0.315  Sum_probs=210.6

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      |||+++.++++|  ++++++|.|+|+++||+|||.+++||++|++++.|.+   .+|.++|||++|+|+++|+++++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999998877  9999999999999999999999999999999998876   46899999999999999999999999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      ||||+....                             .+                  |+|+||+.++.++++++|++++
T Consensus        82 GdrV~~~~~-----------------------------~~------------------G~~aey~~v~~~~~~~~P~~~~  114 (325)
T 3jyn_A           82 GDRVAYGTG-----------------------------PL------------------GAYSEVHVLPEANLVKLADSVS  114 (325)
T ss_dssp             TCEEEESSS-----------------------------SS------------------CCSBSEEEEEGGGEEECCTTSC
T ss_pred             CCEEEEecC-----------------------------CC------------------ccccceEEecHHHeEECCCCCC
Confidence            999965421                             12                  4999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G-~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      +++||++++.+.|+|+++.+..+++++++|||+| +|++|++++|+|+.+|+ +|++++++++++++++++|++.++|++
T Consensus       115 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~  193 (325)
T 3jyn_A          115 FEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYS  193 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETT
T ss_pred             HHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence            9999999999999999998889999999999998 59999999999999999 999999999999999999999999987


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .++.+.+++.+.+ ++|++||++|. ..+..++++++++|++
T Consensus       194 ~--~~~~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~i  235 (325)
T 3jyn_A          194 H--EDVAKRVLELTDGKKCPVVYDGVGQ-DTWLTSLDSVAPRGLV  235 (325)
T ss_dssp             T--SCHHHHHHHHTTTCCEEEEEESSCG-GGHHHHHTTEEEEEEE
T ss_pred             C--ccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhcCCCEE
Confidence            6  7888999999987 99999999998 6789999999999986

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=2.5e-43  Score=323.58  Aligned_cols=248  Identities=17%  Similarity=0.218  Sum_probs=214.4

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCC-CcEEEEEeEeeCChhhhhhhcc--cC---CC---CcccCcceeEEEEEcCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQP-EEIRIKVVCTSLCRSDITAWET--QA---IF---PRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~-~eVlVkv~~~~i~~~D~~~~~g--~~---~~---p~~~G~e~~G~V~~vG~~~~   83 (291)
                      |||+++.+++++++++++|.|+|++ +||||||.+++||++|++.+.|  .+   .+   |.++|||++|+|++  ++ +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~   77 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H   77 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence            6899999988779999999999999 9999999999999999999988  43   45   89999999999999  77 8


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      +|++||||++.+..+|+.|.+|++++++.|+...+...|....                  .|+|+||+.++.++++++|
T Consensus        78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~------------------~G~~aey~~v~~~~~~~iP  139 (366)
T 2cdc_A           78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKM------------------DGFMREWWYDDPKYLVKIP  139 (366)
T ss_dssp             SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEE------------------CCSCBSEEEECGGGEEEEC
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCC------------------CCceeEEEEechHHeEECc
Confidence            8999999999999999999999999999999765421122101                  1499999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHH--h--hcCCC--C-------CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh--
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAW--N--VADIS--K-------GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP--  228 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~--~--~~~~~--~-------~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~--  228 (291)
                      ++++ ++|+ ++.++.|||+++.  +  ..+++  +       +++|||+|+|++|++++|+|+.+|+ +|+++++++  
T Consensus       140 ~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~  216 (366)
T 2cdc_A          140 KSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPT  216 (366)
T ss_dssp             GGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCC
T ss_pred             CCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccc
Confidence            9999 8775 5668999999886  4  77888  8       9999999999999999999999999 999999998  


Q ss_pred             -hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHH-HHHHHhhccCccc
Q 022819          229 -EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMI-TTALQSCCDVRSI  290 (291)
Q Consensus       229 -~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~-~~~~~~l~~~G~i  290 (291)
                       +++++++++|++.+ | ++   ++.+.+++ +.+++|++||++|.+..+ +.++++|+++|++
T Consensus       217 ~~~~~~~~~~ga~~v-~-~~---~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~i  274 (366)
T 2cdc_A          217 EVEQTVIEETKTNYY-N-SS---NGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRNGVL  274 (366)
T ss_dssp             HHHHHHHHHHTCEEE-E-CT---TCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEEEEE
T ss_pred             hHHHHHHHHhCCcee-c-hH---HHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcCCEE
Confidence             89999999999888 6 42   55556666 546899999999987778 9999999999986

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=4.9e-42  Score=314.81  Aligned_cols=232  Identities=19%  Similarity=0.251  Sum_probs=207.6

Q ss_pred             ceeeeEEEEecC---CCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCC
Q 022819           10 VITCKAAVAWGA---GQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPG   81 (291)
Q Consensus        10 ~~~~~a~~~~~~---~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~   81 (291)
                      .++|||+++.++   +.|  ++++++|.|+|+++||+|||.+++||++|+..+.|..   .+|.++|||++|+|+++|++
T Consensus        20 m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~   99 (363)
T 4dvj_A           20 FQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVGPD   99 (363)
T ss_dssp             CCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEECTT
T ss_pred             hheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeCCC
Confidence            368999999876   323  8999999999999999999999999999999998876   57899999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEE
Q 022819           82 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK  161 (291)
Q Consensus        82 ~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (291)
                      +++|++||||+.....                          . .+                  |+|+||+.++.+.+++
T Consensus       100 v~~~~vGdrV~~~~~~--------------------------~-~~------------------G~~aey~~v~~~~~~~  134 (363)
T 4dvj_A          100 VTLFRPGDEVFYAGSI--------------------------I-RP------------------GTNAEFHLVDERIVGR  134 (363)
T ss_dssp             CCSCCTTCEEEECCCT--------------------------T-SC------------------CSCBSEEEEEGGGCEE
T ss_pred             CCCCCCCCEEEEccCC--------------------------C-CC------------------ccceEEEEeCHHHeeE
Confidence            9999999999754210                          0 12                  4999999999999999


Q ss_pred             CCCCCChhhhhhhhhhhhhhHhHHHhhcCCC-----CCCEEEEEc-CChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHH
Q 022819          162 VSSIAPLEKICLLSCGLSAGLGAAWNVADIS-----KGSTVVIFG-LGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       162 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-----~~~~vlV~G-~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a  234 (291)
                      +|+++++++||++++++.|||+++.+..+++     ++++|||+| +|++|++++|+|+.+ |+ +|+++++++++++++
T Consensus       135 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~  213 (363)
T 4dvj_A          135 KPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWV  213 (363)
T ss_dssp             CCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHH
T ss_pred             CCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999999988889988     899999998 599999999999985 77 999999999999999


Q ss_pred             HHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          235 KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       235 ~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++|++.+++++   +++.+.++++.++++|+||||+|++..++.++++++++|++
T Consensus       214 ~~lGad~vi~~~---~~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~i  266 (363)
T 4dvj_A          214 KSLGAHHVIDHS---KPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRF  266 (363)
T ss_dssp             HHTTCSEEECTT---SCHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEE
T ss_pred             HHcCCCEEEeCC---CCHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEE
Confidence            999999999986   35778888874459999999999977899999999999986

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=8.4e-42  Score=308.12  Aligned_cols=225  Identities=21%  Similarity=0.237  Sum_probs=199.3

Q ss_pred             eeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc--------CCCCcccCcceeEEEEEcCC
Q 022819           11 ITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--------AIFPRIFGHEASGIVESVGP   80 (291)
Q Consensus        11 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~--------~~~p~~~G~e~~G~V~~vG~   80 (291)
                      ++|||+++.++++|  ++++++|.|+|+++||||||++++||++|++.+.|.        ..+|.++|||++|+|+++|+
T Consensus         5 ~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~   84 (321)
T 3tqh_A            5 KEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGS   84 (321)
T ss_dssp             CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECT
T ss_pred             ccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCC
Confidence            47999999998877  999999999999999999999999999999998882        26799999999999999999


Q ss_pred             CCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceE
Q 022819           81 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (291)
Q Consensus        81 ~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  160 (291)
                      ++++|++||||+..+..++                          .+                  |+|+||+.++.+.++
T Consensus        85 ~v~~~~~GdrV~~~~~~~~--------------------------~~------------------G~~aey~~v~~~~~~  120 (321)
T 3tqh_A           85 DVNNVNIGDKVMGIAGFPD--------------------------HP------------------CCYAEYVCASPDTII  120 (321)
T ss_dssp             TCCSCCTTCEEEEECSTTT--------------------------CC------------------CCSBSEEEECGGGEE
T ss_pred             CCCCCCCCCEEEEccCCCC--------------------------CC------------------CcceEEEEecHHHhc
Confidence            9999999999987632110                          12                  499999999999999


Q ss_pred             ECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          161 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       161 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G-~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      ++|+++++++||++++++.|||+++ +..+++++++|||+| +|++|++++|+|+.+|+ +|+++. +++++++++++|+
T Consensus       121 ~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~lGa  197 (321)
T 3tqh_A          121 QKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKALGA  197 (321)
T ss_dssp             ECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHTC
T ss_pred             cCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHcCC
Confidence            9999999999999999999999998 889999999999997 69999999999999999 899886 5667999999999


Q ss_pred             ceEeCCCCCCch-HHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          240 TEFLNPNDNNEP-VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       240 ~~~i~~~~~~~~-~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.++|+++  .+ +.+.+     .++|+|||++|++. +..++++++++|++
T Consensus       198 ~~~i~~~~--~~~~~~~~-----~g~D~v~d~~g~~~-~~~~~~~l~~~G~i  241 (321)
T 3tqh_A          198 EQCINYHE--EDFLLAIS-----TPVDAVIDLVGGDV-GIQSIDCLKETGCI  241 (321)
T ss_dssp             SEEEETTT--SCHHHHCC-----SCEEEEEESSCHHH-HHHHGGGEEEEEEE
T ss_pred             CEEEeCCC--cchhhhhc-----cCCCEEEECCCcHH-HHHHHHhccCCCEE
Confidence            99999875  44 43332     47999999999865 49999999999986

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.1e-42  Score=312.06  Aligned_cols=227  Identities=22%  Similarity=0.314  Sum_probs=200.0

Q ss_pred             ceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCC
Q 022819           10 VITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        10 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      +|+|||+++.+++.+  ++++++|.|+|+++||+|||++++||++|++.+.|.+    .+|.++|||++|+|+++|++++
T Consensus         1 sm~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (349)
T 4a27_A            1 SMEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVK   80 (349)
T ss_dssp             CCCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCC
T ss_pred             CceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCC
Confidence            368999999999864  9999999999999999999999999999999998875    5788999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      +|++||||+.+..                              +                  |+|++|+.++.++++++|
T Consensus        81 ~~~~GdrV~~~~~------------------------------~------------------G~~aey~~v~~~~~~~iP  112 (349)
T 4a27_A           81 GYEIGDRVMAFVN------------------------------Y------------------NAWAEVVCTPVEFVYKIP  112 (349)
T ss_dssp             SCCTTCEEEEECS------------------------------S------------------CCSBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEEecC------------------------------C------------------CcceEEEEecHHHeEECC
Confidence            9999999975421                              1                  499999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      +++++++||++++++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|..+|++++ +++++++++ +|++.+
T Consensus       113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~  190 (349)
T 4a27_A          113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHL  190 (349)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEE
Confidence            999999999999999999999889999999999999998 99999999999999655888887 677888888 999999


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++ ++  .++.+.+++++++++|+||||+|++ .++.++++++++|++
T Consensus       191 ~~-~~--~~~~~~~~~~~~~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~  234 (349)
T 4a27_A          191 FD-RN--ADYVQEVKRISAEGVDIVLDCLCGD-NTGKGLSLLKPLGTY  234 (349)
T ss_dssp             EE-TT--SCHHHHHHHHCTTCEEEEEEECC--------CTTEEEEEEE
T ss_pred             Ec-CC--ccHHHHHHHhcCCCceEEEECCCch-hHHHHHHHhhcCCEE
Confidence            98 44  7888899988866999999999985 458999999999986

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.3e-41  Score=307.19  Aligned_cols=231  Identities=20%  Similarity=0.311  Sum_probs=208.1

Q ss_pred             cceeeeEEEEecCCCC--eEE-EEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCC
Q 022819            9 QVITCKAAVAWGAGQP--LVV-EEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPG   81 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~--~~~-~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~   81 (291)
                      .+.+|||+++.+++.+  +++ +++|.|+|+++||+|||.+++||++|++++.|.+    .+|.++|||++|+|+++|++
T Consensus        26 ~~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~  105 (351)
T 1yb5_A           26 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDN  105 (351)
T ss_dssp             --CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTT
T ss_pred             CcceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCC
Confidence            3457999999987755  888 7999999999999999999999999999988864    46899999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEE
Q 022819           82 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK  161 (291)
Q Consensus        82 ~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (291)
                      +++|++||||+....                             .+                  |+|+||+.++.+++++
T Consensus       106 v~~~~vGdrV~~~~~-----------------------------~~------------------G~~aey~~v~~~~~~~  138 (351)
T 1yb5_A          106 ASAFKKGDRVFTSST-----------------------------IS------------------GGYAEYALAADHTVYK  138 (351)
T ss_dssp             CTTCCTTCEEEESCC-----------------------------SS------------------CSSBSEEEEEGGGEEE
T ss_pred             CCCCCCCCEEEEeCC-----------------------------CC------------------CcceeEEEECHHHeEE
Confidence            999999999975421                             11                  4999999999999999


Q ss_pred             CCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          162 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       162 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      +|+++++++||++++++.|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|++++++++++++++++|++
T Consensus       139 ~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~  217 (351)
T 1yb5_A          139 LPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAH  217 (351)
T ss_dssp             CCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCS
T ss_pred             CCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCC
Confidence            99999999999999999999999888899999999999997 9999999999999999 999999999999999999999


Q ss_pred             eEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          241 EFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       241 ~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++|+++  .++.+.+.+.+.+ ++|++||++|. ..+..++++++++|++
T Consensus       218 ~~~d~~~--~~~~~~~~~~~~~~~~D~vi~~~G~-~~~~~~~~~l~~~G~i  265 (351)
T 1yb5_A          218 EVFNHRE--VNYIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHGGRV  265 (351)
T ss_dssp             EEEETTS--TTHHHHHHHHHCTTCEEEEEESCHH-HHHHHHHHHEEEEEEE
T ss_pred             EEEeCCC--chHHHHHHHHcCCCCcEEEEECCCh-HHHHHHHHhccCCCEE
Confidence            9998875  6788888888877 89999999998 4788999999999986

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=4e-42  Score=313.63  Aligned_cols=231  Identities=16%  Similarity=0.187  Sum_probs=201.9

Q ss_pred             cceeeeEEEEe--c---CCCCeEEEEe---------ecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcc
Q 022819            9 QVITCKAAVAW--G---AGQPLVVEEV---------EVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHE   70 (291)
Q Consensus         9 ~~~~~~a~~~~--~---~~~~~~~~~~---------~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e   70 (291)
                      ++.+|||+++.  +   ..+.++++++         |.|+|+++||||||++++||++|++.+.|.+    .+|.++|||
T Consensus         7 ~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E   86 (349)
T 3pi7_A            7 IPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFE   86 (349)
T ss_dssp             CCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCSE
T ss_pred             CchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccce
Confidence            67889999999  2   2234777777         9999999999999999999999999999875    578999999


Q ss_pred             eeEEEEEcCCCC-CCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCcccee
Q 022819           71 ASGIVESVGPGV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFS  149 (291)
Q Consensus        71 ~~G~V~~vG~~~-~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~  149 (291)
                      ++|+|+++|+++ ++|++||||+....                          .. .+                  |+|+
T Consensus        87 ~~G~V~~vG~~v~~~~~vGdrV~~~~g--------------------------~~-~~------------------G~~a  121 (349)
T 3pi7_A           87 GVGTIVAGGDEPYAKSLVGKRVAFATG--------------------------LS-NW------------------GSWA  121 (349)
T ss_dssp             EEEEEEEECSSHHHHHHTTCEEEEECT--------------------------TS-SC------------------CSSB
T ss_pred             EEEEEEEECCCccCCCCCCCEEEEecc--------------------------CC-CC------------------ccce
Confidence            999999999999 99999999976621                          11 22                  4999


Q ss_pred             eEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCC-CEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          150 EYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKG-STVVIFG-LGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       150 ~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlV~G-~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ||+.++.++++++|+++++++||++++.++|||+ +.+..+ +++ +++||+| +|++|++++|+|+.+|+ +|++++++
T Consensus       122 ey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~  198 (349)
T 3pi7_A          122 EYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRR  198 (349)
T ss_dssp             SEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESC
T ss_pred             eeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            9999999999999999999999999999999996 456666 666 7888885 59999999999999999 99999999


Q ss_pred             hhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          228 PEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       228 ~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++++++++|++.++|+++  .++.+.+++++.+ ++|++|||+|++ .+..++++++++|++
T Consensus       199 ~~~~~~~~~~Ga~~~~~~~~--~~~~~~v~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~G~i  259 (349)
T 3pi7_A          199 DEQIALLKDIGAAHVLNEKA--PDFEATLREVMKAEQPRIFLDAVTGP-LASAIFNAMPKRARW  259 (349)
T ss_dssp             GGGHHHHHHHTCSEEEETTS--TTHHHHHHHHHHHHCCCEEEESSCHH-HHHHHHHHSCTTCEE
T ss_pred             HHHHHHHHHcCCCEEEECCc--HHHHHHHHHHhcCCCCcEEEECCCCh-hHHHHHhhhcCCCEE
Confidence            99999999999999999876  7889999999887 999999999985 568999999999986

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=4.4e-41  Score=307.39  Aligned_cols=231  Identities=22%  Similarity=0.295  Sum_probs=207.5

Q ss_pred             CcceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCC
Q 022819            8 PQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPG   81 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~   81 (291)
                      ..+.+|||+++.+++.+  ++++++|.|+|+++||+|||.+++||++|++.+.|.+    .+|.++|||++|+|+++|++
T Consensus        18 ~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~   97 (354)
T 2j8z_A           18 LYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPG   97 (354)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSC
T ss_pred             cchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCC
Confidence            35678999999998864  8999999999999999999999999999999988865    35789999999999999999


Q ss_pred             C-CCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceE
Q 022819           82 V-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (291)
Q Consensus        82 ~-~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  160 (291)
                      + ++|++||||+....                              +                  |+|+||+.++.++++
T Consensus        98 v~~~~~vGdrV~~~~~------------------------------~------------------G~~aey~~v~~~~~~  129 (354)
T 2j8z_A           98 CQGHWKIGDTAMALLP------------------------------G------------------GGQAQYVTVPEGLLM  129 (354)
T ss_dssp             C--CCCTTCEEEEECS------------------------------S------------------CCSBSEEEEEGGGEE
T ss_pred             cCCCCCCCCEEEEecC------------------------------C------------------CcceeEEEeCHHHcE
Confidence            9 99999999965411                              1                  499999999999999


Q ss_pred             ECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          161 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       161 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      ++|+++++++||+++.+++|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|+
T Consensus       130 ~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~  208 (354)
T 2j8z_A          130 PIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGA  208 (354)
T ss_dssp             ECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence            999999999999999999999999888899999999999985 9999999999999999 99999999999999999999


Q ss_pred             ceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          240 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       240 ~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.++|+++  .++.+.+.+.+.+ ++|++||++|++ .+..++++|+++|++
T Consensus       209 ~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~i  257 (354)
T 2j8z_A          209 AAGFNYKK--EDFSEATLKFTKGAGVNLILDCIGGS-YWEKNVNCLALDGRW  257 (354)
T ss_dssp             SEEEETTT--SCHHHHHHHHTTTSCEEEEEESSCGG-GHHHHHHHEEEEEEE
T ss_pred             cEEEecCC--hHHHHHHHHHhcCCCceEEEECCCch-HHHHHHHhccCCCEE
Confidence            99998875  6788888888876 899999999985 788999999999986

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.1e-41  Score=306.52  Aligned_cols=219  Identities=16%  Similarity=0.172  Sum_probs=190.3

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      +|||+++.+..+.++++++|.|+|+++||||||.+++||++|++.+.|.+   .+|.++|||++|+|+++|+++++|++|
T Consensus         4 tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vG   83 (315)
T 3goh_A            4 QHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKMLG   83 (315)
T ss_dssp             EEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGGTT
T ss_pred             ceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCCCC
Confidence            58999999533459999999999999999999999999999999998876   678999999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      |||+..+..                          . .+                  |+|+||+.++.++++++|+++++
T Consensus        84 drV~~~~~~--------------------------~-~~------------------G~~aey~~v~~~~~~~iP~~~~~  118 (315)
T 3goh_A           84 RRVAYHTSL--------------------------K-RH------------------GSFAEFTVLNTDRVMTLPDNLSF  118 (315)
T ss_dssp             CEEEEECCT--------------------------T-SC------------------CSSBSEEEEETTSEEECCTTSCH
T ss_pred             CEEEEeCCC--------------------------C-CC------------------cccccEEEEcHHHhccCcCCCCH
Confidence            999876321                          0 12                  49999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      ++||+++.+++|||+++ +..+++++++|||+|+|++|++++|+|+.+|+ +|++++ +++|+++++++|++.+++  + 
T Consensus       119 ~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~--d-  192 (315)
T 3goh_A          119 ERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR--E-  192 (315)
T ss_dssp             HHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES--S-
T ss_pred             HHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc--C-
Confidence            99999999999999998 88999999999999999999999999999999 999999 899999999999999884  1 


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                          .+.+    ++++|+||||+|++ .+..++++|+++|++
T Consensus       193 ----~~~v----~~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~  225 (315)
T 3goh_A          193 ----PSQV----TQKYFAIFDAVNSQ-NAAALVPSLKANGHI  225 (315)
T ss_dssp             ----GGGC----CSCEEEEECC--------TTGGGEEEEEEE
T ss_pred             ----HHHh----CCCccEEEECCCch-hHHHHHHHhcCCCEE
Confidence                1122    34999999999985 458899999999986

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=6e-41  Score=306.83  Aligned_cols=231  Identities=19%  Similarity=0.310  Sum_probs=198.0

Q ss_pred             CcceeeeEEEEecCCCC---eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCC
Q 022819            8 PQVITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGP   80 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~   80 (291)
                      .|+.+|||+++.+++.|   ++++++|.|+|+++||+|||.+++||++|++.+.|.+    .+|.++|||++|+|+++|+
T Consensus        22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~  101 (357)
T 1zsy_A           22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGS  101 (357)
T ss_dssp             CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECT
T ss_pred             hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCC
Confidence            46678999999999876   8899999999999999999999999999999998865    3688999999999999999


Q ss_pred             CCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceE
Q 022819           81 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (291)
Q Consensus        81 ~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  160 (291)
                      ++++|++||||+..+.                             .                  .|+|+||+.++.++++
T Consensus       102 ~v~~~~vGdrV~~~~~-----------------------------~------------------~G~~aey~~v~~~~~~  134 (357)
T 1zsy_A          102 NVTGLKPGDWVIPANA-----------------------------G------------------LGTWRTEAVFSEEALI  134 (357)
T ss_dssp             TCCSCCTTCEEEESSS-----------------------------C------------------SCCSBSEEEEEGGGEE
T ss_pred             CCCCCCCCCEEEEcCC-----------------------------C------------------CccceeEEecCHHHcE
Confidence            9999999999976421                             0                  1499999999999999


Q ss_pred             ECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----hhHHHHH
Q 022819          161 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----EKCEKAK  235 (291)
Q Consensus       161 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~----~~~~~a~  235 (291)
                      ++|+++++++||++++.+.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ ++|++..++    +++++++
T Consensus       135 ~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~  213 (357)
T 1zsy_A          135 QVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLK  213 (357)
T ss_dssp             EECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHH
Confidence            999999999999999889999999888889999999999997 9999999999999999 666654432    3578899


Q ss_pred             HcCCceEeCCCCCCchHHHHHHHHhcC--CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          236 AFGVTEFLNPNDNNEPVQQVIKRITDG--GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       236 ~~g~~~~i~~~~~~~~~~~~~~~~~~g--~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|++.++++++   ...+.+.+.+.+  ++|+|||++|++.. ..++++++++|++
T Consensus       214 ~lGa~~vi~~~~---~~~~~~~~~~~~~~~~Dvvid~~g~~~~-~~~~~~l~~~G~i  266 (357)
T 1zsy_A          214 SLGAEHVITEEE---LRRPEMKNFFKDMPQPRLALNCVGGKSS-TELLRQLARGGTM  266 (357)
T ss_dssp             HTTCSEEEEHHH---HHSGGGGGTTSSSCCCSEEEESSCHHHH-HHHHTTSCTTCEE
T ss_pred             hcCCcEEEecCc---chHHHHHHHHhCCCCceEEEECCCcHHH-HHHHHhhCCCCEE
Confidence            999999987642   112344555544  59999999998544 6789999999986

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=9e-41  Score=306.23  Aligned_cols=231  Identities=18%  Similarity=0.235  Sum_probs=201.5

Q ss_pred             eeeeEEEEecCCCC---eEEEEeecCCCC--CCcEEEEEeEeeCChhhhhhhcccC----CCC---------cccCccee
Q 022819           11 ITCKAAVAWGAGQP---LVVEEVEVNPPQ--PEEIRIKVVCTSLCRSDITAWETQA----IFP---------RIFGHEAS   72 (291)
Q Consensus        11 ~~~~a~~~~~~~~~---~~~~~~~~~~~~--~~eVlVkv~~~~i~~~D~~~~~g~~----~~p---------~~~G~e~~   72 (291)
                      ++|||+++.++++|   ++++++|.|.|+  ++||+|||.+++||++|++.+.|.+    .+|         .++|||++
T Consensus         2 ~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~~   81 (364)
T 1gu7_A            2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (364)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCceeE
Confidence            67999999999875   899999999887  9999999999999999999998865    246         89999999


Q ss_pred             EEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEE
Q 022819           73 GIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYT  152 (291)
Q Consensus        73 G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  152 (291)
                      |+|+++|+++++|++||||+....                             .                  .|+|+||+
T Consensus        82 G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~------------------~G~~aey~  114 (364)
T 1gu7_A           82 FEVIKVGSNVSSLEAGDWVIPSHV-----------------------------N------------------FGTWRTHA  114 (364)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSS-----------------------------C------------------CCCSBSEE
T ss_pred             EEEEEeCCCCCcCCCCCEEEecCC-----------------------------C------------------CCcchheE
Confidence            999999999999999999976521                             1                  14999999


Q ss_pred             EeeccceEECCC-----------CCChhhhhhhhhhhhhhHhHHHhhcCCCCC-CEEEEEcC-ChHHHHHHHHHHHcCCC
Q 022819          153 VVHSGCAVKVSS-----------IAPLEKICLLSCGLSAGLGAAWNVADISKG-STVVIFGL-GTVGLSVAQGAKARGAS  219 (291)
Q Consensus       153 ~~~~~~~~~ip~-----------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlV~G~-g~~G~~~i~~a~~~g~~  219 (291)
                      .++.++++++|+           ++++++||++++++.|||+++.+..+++++ ++|||+|+ |++|++++|+|+.+|+ 
T Consensus       115 ~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-  193 (364)
T 1gu7_A          115 LGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-  193 (364)
T ss_dssp             EEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-
T ss_pred             ecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-
Confidence            999999999999           899999999999999999998777899999 99999997 9999999999999999 


Q ss_pred             eEEEEcCChhh----HHHHHHcCCceEeCCCCC-CchHHHHHHHHh--cC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          220 RIIGVDTNPEK----CEKAKAFGVTEFLNPNDN-NEPVQQVIKRIT--DG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       220 ~vi~~~~~~~~----~~~a~~~g~~~~i~~~~~-~~~~~~~~~~~~--~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|++.++.++    +++++++|+++++++++. ..++.+.+++++  ++ ++|+|||++|++... .++++++++|++
T Consensus       194 ~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~G~~  271 (364)
T 1gu7_A          194 NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSST-GIARKLNNNGLM  271 (364)
T ss_dssp             EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSCTTCEE
T ss_pred             EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchhHH-HHHHHhccCCEE
Confidence            78887655544    678899999999987520 146778888887  55 899999999986555 889999999986

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=2.3e-40  Score=304.85  Aligned_cols=233  Identities=20%  Similarity=0.250  Sum_probs=203.3

Q ss_pred             CCcceeeeEEEEecCCCC--eEE-EEeecCCC-CCCcEEEEEeEeeCChhhhhhhcccC------------------CCC
Q 022819            7 QPQVITCKAAVAWGAGQP--LVV-EEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQA------------------IFP   64 (291)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~--~~~-~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g~~------------------~~p   64 (291)
                      ..++++|||+++.+++.+  +++ +++|.|.| +++||||||.+++||++|++++.|..                  .+|
T Consensus        16 ~~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P   95 (375)
T 2vn8_A           16 ENLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFP   95 (375)
T ss_dssp             --CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCS
T ss_pred             cccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCC
Confidence            346788999999998755  888 89999985 99999999999999999999987741                  278


Q ss_pred             cccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccC
Q 022819           65 RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCA  144 (291)
Q Consensus        65 ~~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~  144 (291)
                      .++|||++|+|+++|+++++|++||||+..+..                          . .+                 
T Consensus        96 ~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~--------------------------~-~~-----------------  131 (375)
T 2vn8_A           96 LTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPP--------------------------W-KQ-----------------  131 (375)
T ss_dssp             BCCCCEEEEEEEEECTTCCSCCTTCEEEEECCT--------------------------T-SC-----------------
T ss_pred             cccceeeeEEEEEeCCCCCCCCCCCEEEEecCC--------------------------C-CC-----------------
Confidence            999999999999999999999999999765320                          0 12                 


Q ss_pred             ccceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcC----CCCCCEEEEEcC-ChHHHHHHHHHHHcCCC
Q 022819          145 VSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD----ISKGSTVVIFGL-GTVGLSVAQGAKARGAS  219 (291)
Q Consensus       145 ~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~----~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~  219 (291)
                       |+|+||+.++.++++++|+++++++||++++.+.|||+++.+..+    ++++++|||+|+ |++|++++|+|+.+|+ 
T Consensus       132 -G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-  209 (375)
T 2vn8_A          132 -GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-  209 (375)
T ss_dssp             -CSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-
T ss_pred             -ccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-
Confidence             499999999999999999999999999999999999999878888    999999999985 9999999999999999 


Q ss_pred             eEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          220 RIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       220 ~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                      +|++++ +++++++++++|++.++++++  .++.+.+.+.  +++|++||++|++ ..+..++++++++|++
T Consensus       210 ~Vi~~~-~~~~~~~~~~lGa~~v~~~~~--~~~~~~~~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~G~i  276 (375)
T 2vn8_A          210 HVTAVC-SQDASELVRKLGADDVIDYKS--GSVEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSGATY  276 (375)
T ss_dssp             EEEEEE-CGGGHHHHHHTTCSEEEETTS--SCHHHHHHTS--CCBSEEEESSCTTHHHHGGGGBCSSSCCEE
T ss_pred             EEEEEe-ChHHHHHHHHcCCCEEEECCc--hHHHHHHhhc--CCCCEEEECCCChhhhhHHHHHhhcCCcEE
Confidence            899987 678999999999999999875  5666666553  4899999999996 5668899999999986

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=2.4e-40  Score=299.95  Aligned_cols=227  Identities=27%  Similarity=0.378  Sum_probs=203.8

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      |||+++.+++.+  ++++++|.|+|+++||+|||.+++||++|++.+.|.+      .+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            799999988755  8999999999999999999999999999999988754      26899999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      |++||||+..+.                             .+                  |+|+||+.++.++++++|+
T Consensus        82 ~~~GdrV~~~~~-----------------------------~~------------------G~~aey~~v~~~~~~~iP~  114 (333)
T 1wly_A           82 FTVGERVCTCLP-----------------------------PL------------------GAYSQERLYPAEKLIKVPK  114 (333)
T ss_dssp             CCTTCEEEECSS-----------------------------SC------------------CCSBSEEEEEGGGCEECCT
T ss_pred             CCCCCEEEEecC-----------------------------CC------------------CcceeEEEecHHHcEeCCC
Confidence            999999965311                             01                  4999999999999999999


Q ss_pred             CCChhh--hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce
Q 022819          165 IAPLEK--ICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE  241 (291)
Q Consensus       165 ~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~  241 (291)
                      ++++++  ||+++.++.|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++.
T Consensus       115 ~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~  193 (333)
T 1wly_A          115 DLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHH  193 (333)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSE
T ss_pred             CCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCE
Confidence            999999  99999999999999888899999999999996 9999999999999999 9999999999999999999999


Q ss_pred             EeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          242 FLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       242 ~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|+++  .++.+.+.+.+.+ ++|++||++|+ ..++.++++++++|++
T Consensus       194 ~~d~~~--~~~~~~i~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~i  240 (333)
T 1wly_A          194 TINYST--QDFAEVVREITGGKGVDVVYDSIGK-DTLQKSLDCLRPRGMC  240 (333)
T ss_dssp             EEETTT--SCHHHHHHHHHTTCCEEEEEECSCT-TTHHHHHHTEEEEEEE
T ss_pred             EEECCC--HHHHHHHHHHhCCCCCeEEEECCcH-HHHHHHHHhhccCCEE
Confidence            888875  6777888888766 89999999998 7889999999999986

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.9e-40  Score=297.17  Aligned_cols=227  Identities=21%  Similarity=0.252  Sum_probs=205.1

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      |||+++.+++.|  ++++++|.|+|+++||+|||.+++||++|++.+.|.+   .+|.++|||++|+|+++|+++++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~   81 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKA   81 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            799999988755  8999999999999999999999999999999998865   36899999999999999999999999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      |||| ...    +.                        .+                  |+|+||+.++.+.++++|++++
T Consensus        82 GdrV-~~~----g~------------------------~~------------------G~~aey~~v~~~~~~~iP~~l~  114 (327)
T 1qor_A           82 GDRV-VYA----QS------------------------AL------------------GAYSSVHNIIADKAAILPAAIS  114 (327)
T ss_dssp             TCEE-EES----CC------------------------SS------------------CCSBSEEEEEGGGEEECCTTSC
T ss_pred             CCEE-EEC----CC------------------------CC------------------ceeeeEEEecHHHcEECCCCCC
Confidence            9999 331    00                        11                  4999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      +++||+++.++.|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++.+++++
T Consensus       115 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~  193 (327)
T 1qor_A          115 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYR  193 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETT
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECC
Confidence            99999999999999999887899999999999985 9999999999999999 999999999999999999999998887


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .++.+.+.+.+.+ ++|++||++| ...++.++++++++|++
T Consensus       194 ~--~~~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~i  235 (327)
T 1qor_A          194 E--EDLVERLKEITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLM  235 (327)
T ss_dssp             T--SCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEE
T ss_pred             C--ccHHHHHHHHhCCCCceEEEECCc-hHHHHHHHHHhcCCCEE
Confidence            5  6778888888776 8999999999 47889999999999986

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=6.2e-41  Score=302.57  Aligned_cols=227  Identities=17%  Similarity=0.180  Sum_probs=196.9

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.++++|  ++++++|.|+|+++||||||++++||++|++.+.|.+    .+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            799999999887  8899999999999999999999999999999998865    568999999999999998  57899


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||||++.+..                       .|.. .+                  |+|+||+.++.++++++|+++
T Consensus        79 vGdrV~~~~~~-----------------------~g~~-~~------------------G~~aey~~v~~~~~~~iP~~~  116 (324)
T 3nx4_A           79 AGQEVLLTGWG-----------------------VGEN-HW------------------GGLAERARVKGDWLVALPAGL  116 (324)
T ss_dssp             TTCEEEEECTT-----------------------BTTT-BC------------------CSSBSEEEECGGGCEECCTTC
T ss_pred             CCCEEEEcccc-----------------------cCCC-CC------------------CceeeEEecCHHHcEECCCCC
Confidence            99999876321                       1111 12                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHh--hcCCCCCC-EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE
Q 022819          167 PLEKICLLSCGLSAGLGAAWN--VADISKGS-TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF  242 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~-~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~  242 (291)
                      ++++||++++.+.|||+++..  ..++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|++++
T Consensus       117 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v  195 (324)
T 3nx4_A          117 SSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRI  195 (324)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEE
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEE
Confidence            999999999999999998763  45566633 4999997 9999999999999999 99999999999999999999999


Q ss_pred             eCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          243 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +|+++  .+.   +++++.+++|++||++|++ .++.++++++++|++
T Consensus       196 i~~~~--~~~---~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~i  237 (324)
T 3nx4_A          196 LSRDE--FAE---SRPLEKQLWAGAIDTVGDK-VLAKVLAQMNYGGCV  237 (324)
T ss_dssp             EEGGG--SSC---CCSSCCCCEEEEEESSCHH-HHHHHHHTEEEEEEE
T ss_pred             EecCC--HHH---HHhhcCCCccEEEECCCcH-HHHHHHHHHhcCCEE
Confidence            98864  222   4555556899999999984 899999999999986

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1.5e-39  Score=298.11  Aligned_cols=227  Identities=22%  Similarity=0.274  Sum_probs=203.9

Q ss_pred             cceeeeEEEEecCCC----CeEE-EEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcC
Q 022819            9 QVITCKAAVAWGAGQ----PLVV-EEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVG   79 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG   79 (291)
                      ++.+|||+++.+++.    .+++ +++|.|+|+++||||||.+++||++|++.+.|.+    .+|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            457899999999875    3889 9999999999999999999999999999998865    468899999999999999


Q ss_pred             CCCC-CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccc
Q 022819           80 PGVT-EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC  158 (291)
Q Consensus        80 ~~~~-~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  158 (291)
                      ++++ +|++||||+...                               +                  |+|+||+.++.++
T Consensus       100 ~~V~~~~~vGdrV~~~~-------------------------------~------------------G~~aey~~v~~~~  130 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMA-------------------------------P------------------GSFAEYTVVPASI  130 (362)
T ss_dssp             TTGGGTCCTTCEEEEEC-------------------------------S------------------CCSBSEEEEEGGG
T ss_pred             CCccCCCCCCCEEEEcc-------------------------------C------------------CcceeEEEEcHHH
Confidence            9999 999999997641                               1                  4999999999999


Q ss_pred             eEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          159 AVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       159 ~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      ++++|+. + .++|+++..+.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++
T Consensus       131 ~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~  207 (362)
T 2c0c_A          131 ATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSL  207 (362)
T ss_dssp             CEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred             eEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHc
Confidence            9999996 3 4677788899999999988899999999999995 9999999999999999 999999999999999999


Q ss_pred             CCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |++.++++++  .++.+.+++.+.+++|++||++|. ..++.++++++++|++
T Consensus       208 Ga~~~~~~~~--~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~i  257 (362)
T 2c0c_A          208 GCDRPINYKT--EPVGTVLKQEYPEGVDVVYESVGG-AMFDLAVDALATKGRL  257 (362)
T ss_dssp             TCSEEEETTT--SCHHHHHHHHCTTCEEEEEECSCT-HHHHHHHHHEEEEEEE
T ss_pred             CCcEEEecCC--hhHHHHHHHhcCCCCCEEEECCCH-HHHHHHHHHHhcCCEE
Confidence            9999998875  677788887765589999999998 6889999999999986

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=4.7e-40  Score=303.28  Aligned_cols=222  Identities=16%  Similarity=0.224  Sum_probs=198.9

Q ss_pred             ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhccc-----------------------------
Q 022819           10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ-----------------------------   60 (291)
Q Consensus        10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~-----------------------------   60 (291)
                      +++|||++......+++++++|.|+|+++||||||++++||++|++.+.|.                             
T Consensus         5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            577899988654445999999999999999999999999999999998774                             


Q ss_pred             ---CCCCcccCcceeEEEEEcCCCC-CCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccC
Q 022819           61 ---AIFPRIFGHEASGIVESVGPGV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKG  136 (291)
Q Consensus        61 ---~~~p~~~G~e~~G~V~~vG~~~-~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~  136 (291)
                         ..+|.++|||++|+|+++|+++ ++|++||||+..+                               +         
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-------------------------------~---------  124 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-------------------------------G---------  124 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-------------------------------S---------
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-------------------------------C---------
Confidence               1367899999999999999999 8899999997652                               1         


Q ss_pred             CccccccCccceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE--cCChHHHHHHHHHH
Q 022819          137 KPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF--GLGTVGLSVAQGAK  214 (291)
Q Consensus       137 ~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~--G~g~~G~~~i~~a~  214 (291)
                               |+|+||+.++.++++++|+++++++||++++..+|||+++ +... +++++|||+  |+|++|++++|+|+
T Consensus       125 ---------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~a~  193 (379)
T 3iup_A          125 ---------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQICL  193 (379)
T ss_dssp             ---------CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHHHH
T ss_pred             ---------CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHHHH
Confidence                     4999999999999999999999999999999999999754 4555 899999999  55999999999999


Q ss_pred             HcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhc
Q 022819          215 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCC  285 (291)
Q Consensus       215 ~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~  285 (291)
                      .+|+ +||+++++++|+++++++|+++++|+++  .++.+.+++++++ ++|+||||+|++..++.++++++
T Consensus       194 ~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~  262 (379)
T 3iup_A          194 KDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS--PTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCME  262 (379)
T ss_dssp             HHTC-CEEEEESSHHHHHHHHHTTCSCEEETTS--TTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHH
T ss_pred             HCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC--hHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcc
Confidence            9999 8999999999999999999999999976  7899999999988 99999999998777888888885

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.4e-38  Score=288.62  Aligned_cols=223  Identities=22%  Similarity=0.221  Sum_probs=200.2

Q ss_pred             eeeeEEEEec--C----CCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcc----eeEEEEEc
Q 022819           11 ITCKAAVAWG--A----GQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHE----ASGIVESV   78 (291)
Q Consensus        11 ~~~~a~~~~~--~----~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e----~~G~V~~v   78 (291)
                      ++||||++.+  +    .+.++++++|.|+|+++||||||++++||++|+..+.+..  .+|.++|||    ++|+|++ 
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~~~p~~~G~e~g~~~~G~V~~-   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSYIPPVGIGEVMRALGVGKVLV-   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCSSCCCCTTSBCCCEEEEEEEE-
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccccCCCCCCCcccCCceEEEEEe-
Confidence            6799999985  1    2349999999999999999999999999999998877644  468888888    7999999 


Q ss_pred             CCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccc
Q 022819           79 GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC  158 (291)
Q Consensus        79 G~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  158 (291)
                       +++++|++||||+..                                                   |+|+||+.++.++
T Consensus        85 -~~v~~~~vGdrV~~~---------------------------------------------------G~~aey~~v~~~~  112 (336)
T 4b7c_A           85 -SKHPGFQAGDYVNGA---------------------------------------------------LGVQDYFIGEPKG  112 (336)
T ss_dssp             -ECSTTCCTTCEEEEE---------------------------------------------------CCSBSEEEECCTT
T ss_pred             -cCCCCCCCCCEEecc---------------------------------------------------CCceEEEEechHH
Confidence             458899999999643                                                   4899999999999


Q ss_pred             eEECCCCCChhhh--hhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-
Q 022819          159 AVKVSSIAPLEKI--CLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-  234 (291)
Q Consensus       159 ~~~ip~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-  234 (291)
                      ++++|+++++.++  +++++++.|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|+++++++++++.+ 
T Consensus       113 ~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~  191 (336)
T 4b7c_A          113 FYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV  191 (336)
T ss_dssp             CEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             eEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            9999999987776  7788899999999889999999999999998 9999999999999999 999999999999999 


Q ss_pred             HHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          235 KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       235 ~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++|++.++|+++  .++.+.+++.+++++|++||++|+ ..+..++++++++|++
T Consensus       192 ~~~g~~~~~~~~~--~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~i  244 (336)
T 4b7c_A          192 EELGFDGAIDYKN--EDLAAGLKRECPKGIDVFFDNVGG-EILDTVLTRIAFKARI  244 (336)
T ss_dssp             HTTCCSEEEETTT--SCHHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEEEEE
T ss_pred             HHcCCCEEEECCC--HHHHHHHHHhcCCCceEEEECCCc-chHHHHHHHHhhCCEE
Confidence            8999999999876  788889998886699999999997 6889999999999986

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6e-39  Score=290.14  Aligned_cols=230  Identities=17%  Similarity=0.208  Sum_probs=193.1

Q ss_pred             eeeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCC
Q 022819           12 TCKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        12 ~~~a~~~~~~~~--~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      +|||+++.+++.  .++++++|.|+|+++||+|||.+++||++|++.+.|..    .+|.++|||++|+|+++  ++++|
T Consensus         3 ~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~   80 (328)
T 1xa0_A            3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRF   80 (328)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSC
T ss_pred             cceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCC
Confidence            589999999874  37899999999999999999999999999999988753    46899999999999995  46789


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||||++....                       .|.. .                  .|+|+||+.++.++++++|++
T Consensus        81 ~vGdrV~~~~~~-----------------------~g~~-~------------------~G~~aey~~v~~~~~~~~P~~  118 (328)
T 1xa0_A           81 REGDEVIATGYE-----------------------IGVT-H------------------FGGYSEYARLHGEWLVPLPKG  118 (328)
T ss_dssp             CTTCEEEEESTT-----------------------BTTT-B------------------CCSSBSEEEECGGGCEECCTT
T ss_pred             CCCCEEEEcccc-----------------------CCCC-C------------------CccceeEEEechHHeEECCCC
Confidence            999999775320                       1111 1                  249999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHH--hhcCCCCCC-EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce
Q 022819          166 APLEKICLLSCGLSAGLGAAW--NVADISKGS-TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE  241 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~  241 (291)
                      +++++||++++.+.|+|.++.  +..++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|++.
T Consensus       119 l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~  197 (328)
T 1xa0_A          119 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE  197 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcE
Confidence            999999999999999998765  346788886 9999997 9999999999999999 8999999999999999999999


Q ss_pred             EeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       242 ~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|+++  .+ .+.+++.+.+++|++||++|+ ..++.++++++++|++
T Consensus       198 ~i~~~~--~~-~~~~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~  242 (328)
T 1xa0_A          198 VLARED--VM-AERIRPLDKQRWAAAVDPVGG-RTLATVLSRMRYGGAV  242 (328)
T ss_dssp             EEECC------------CCSCCEEEEEECSTT-TTHHHHHHTEEEEEEE
T ss_pred             EEecCC--cH-HHHHHHhcCCcccEEEECCcH-HHHHHHHHhhccCCEE
Confidence            998864  22 334555554589999999998 5789999999999986

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=1.3e-39  Score=294.72  Aligned_cols=232  Identities=19%  Similarity=0.229  Sum_probs=195.7

Q ss_pred             ceeeeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCC
Q 022819           10 VITCKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        10 ~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      +.+|||+++.+++.  .++++++|.|+|+++||+|||.+++||++|++.+.|..    .+|.++|||++|+|+++  +++
T Consensus         2 ~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~   79 (330)
T 1tt7_A            2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDP   79 (330)
T ss_dssp             CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SST
T ss_pred             CCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCC
Confidence            45799999998863  48999999999999999999999999999999998864    46889999999999996  467


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      +|++||||++....                       .|.. .                  .|+|+||+.++.++++++|
T Consensus        80 ~~~vGdrV~~~~~~-----------------------~g~~-~------------------~G~~aey~~v~~~~~~~iP  117 (330)
T 1tt7_A           80 RFAEGDEVIATSYE-----------------------LGVS-R------------------DGGLSEYASVPGDWLVPLP  117 (330)
T ss_dssp             TCCTTCEEEEESTT-----------------------BTTT-B------------------CCSSBSSEEECGGGEEECC
T ss_pred             CCCCCCEEEEcccc-----------------------cCCC-C------------------CccceeEEEecHHHeEECC
Confidence            89999999875321                       1111 1                  2499999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHH--hhcCCCCCC-EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAW--NVADISKGS-TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +++++++||++++.+.|||.++.  +..++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|+
T Consensus       118 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa  196 (330)
T 1tt7_A          118 QNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGA  196 (330)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTC
T ss_pred             CCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            99999999999999999998765  346788886 9999997 9999999999999999 79999999999999999999


Q ss_pred             ceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          240 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       240 ~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.++|+++  .+ .+.+++++.+++|++||++|+ ..+..++++++++|++
T Consensus       197 ~~v~~~~~--~~-~~~~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~i  243 (330)
T 1tt7_A          197 SEVISRED--VY-DGTLKALSKQQWQGAVDPVGG-KQLASLLSKIQYGGSV  243 (330)
T ss_dssp             SEEEEHHH--HC-SSCCCSSCCCCEEEEEESCCT-HHHHHHHTTEEEEEEE
T ss_pred             cEEEECCC--ch-HHHHHHhhcCCccEEEECCcH-HHHHHHHHhhcCCCEE
Confidence            99887642  11 112233344489999999999 5889999999999986

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=2.4e-37  Score=282.82  Aligned_cols=227  Identities=17%  Similarity=0.253  Sum_probs=199.2

Q ss_pred             CcceeeeEEEE-ecC---CC----CeEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhcc----cC----CCCcccCcc
Q 022819            8 PQVITCKAAVA-WGA---GQ----PLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWET----QA----IFPRIFGHE   70 (291)
Q Consensus         8 ~~~~~~~a~~~-~~~---~~----~~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g----~~----~~p~~~G~e   70 (291)
                      .++++|||+++ .++   +.    .++++++|.|.| +++||||||.+++||++|+..+.+    .+    .+|.++|||
T Consensus         4 ~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E   83 (357)
T 2zb4_A            4 AAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGG   83 (357)
T ss_dssp             --CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEE
T ss_pred             cccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCcccccc
Confidence            35688999999 565   43    399999999999 999999999999999999887765    22    457899999


Q ss_pred             eeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceee
Q 022819           71 ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE  150 (291)
Q Consensus        71 ~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~  150 (291)
                      ++|+|++  +++++|++||||+..                                                  .|+|+|
T Consensus        84 ~~G~V~~--~~v~~~~vGdrV~~~--------------------------------------------------~G~~ae  111 (357)
T 2zb4_A           84 GIGIIEE--SKHTNLTKGDFVTSF--------------------------------------------------YWPWQT  111 (357)
T ss_dssp             EEEEEEE--ECSTTCCTTCEEEEE--------------------------------------------------EEESBS
T ss_pred             EEEEEEe--cCCCCCCCCCEEEec--------------------------------------------------CCCcEE
Confidence            9999999  888999999999654                                                  138999


Q ss_pred             EEEeeccceEECCCCC-----ChhhhhhhhhhhhhhHhHHHhhcCCCCC--CEEEEEcC-ChHHHHHHHHHHHcCCCeEE
Q 022819          151 YTVVHSGCAVKVSSIA-----PLEKICLLSCGLSAGLGAAWNVADISKG--STVVIFGL-GTVGLSVAQGAKARGASRII  222 (291)
Q Consensus       151 ~~~~~~~~~~~ip~~~-----~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlV~G~-g~~G~~~i~~a~~~g~~~vi  222 (291)
                      |+.++.++++++|+++     +++ +++++.+++|||+++.+..+++++  ++|||+|+ |++|++++|+++.+|+.+|+
T Consensus       112 y~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi  190 (357)
T 2zb4_A          112 KVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVV  190 (357)
T ss_dssp             EEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEE
Confidence            9999999999999999     555 677888999999998889999999  99999997 99999999999999987899


Q ss_pred             EEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          223 GVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       223 ~~~~~~~~~~~a~~-~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++++++++.+++ +|++.++|+++  .++.+.+.+.+.+++|++||++|+ ..++.++++++++|++
T Consensus       191 ~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~d~vi~~~G~-~~~~~~~~~l~~~G~i  256 (357)
T 2zb4_A          191 GICGTHEKCILLTSELGFDAAINYKK--DNVAEQLRESCPAGVDVYFDNVGG-NISDTVISQMNENSHI  256 (357)
T ss_dssp             EEESCHHHHHHHHHTSCCSEEEETTT--SCHHHHHHHHCTTCEEEEEESCCH-HHHHHHHHTEEEEEEE
T ss_pred             EEeCCHHHHHHHHHHcCCceEEecCc--hHHHHHHHHhcCCCCCEEEECCCH-HHHHHHHHHhccCcEE
Confidence            99999999999987 99999998875  678888888876689999999997 7889999999999986

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=6.7e-37  Score=305.29  Aligned_cols=221  Identities=17%  Similarity=0.231  Sum_probs=198.3

Q ss_pred             EEEEecCCCC--eEEEEeec--CCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCCCCCCCCCCE
Q 022819           15 AAVAWGAGQP--LVVEEVEV--NPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFNEGEH   90 (291)
Q Consensus        15 a~~~~~~~~~--~~~~~~~~--~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~~~~~~~Gdr   90 (291)
                      .+.+..++.+  +++++.|.  |+|+++||+|||.++|||++|++++.|.++.|.++|||++|+|+++|+++++|++|||
T Consensus       212 ~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~~~~~lG~E~aG~V~~vG~~V~~~~vGDr  291 (795)
T 3slk_A          212 RLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPGVASLGSEGAGVVVETGPGVTGLAPGDR  291 (795)
T ss_dssp             CEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCSSCCCSCCCEEEEEEEECSSCCSSCTTCE
T ss_pred             EEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCCCCccccceeEEEEEEeCCCCCcCCCCCE
Confidence            4555566554  78887764  6789999999999999999999999998877888999999999999999999999999


Q ss_pred             EEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhh
Q 022819           91 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK  170 (291)
Q Consensus        91 V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  170 (291)
                      |+..                               .+                  |+|++|+.++.+.++++|+++++++
T Consensus       292 V~~~-------------------------------~~------------------G~~ae~~~v~~~~~~~iP~~ls~~~  322 (795)
T 3slk_A          292 VMGM-------------------------------IP------------------KAFGPLAVADHRMVTRIPAGWSFAR  322 (795)
T ss_dssp             EEEC-------------------------------CS------------------SCSSSEEEEETTSEEECCTTCCHHH
T ss_pred             EEEE-------------------------------ec------------------CCCcCEEEeehHHEEECCCCCCHHH
Confidence            9654                               11                  3899999999999999999999999


Q ss_pred             hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 022819          171 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN  249 (291)
Q Consensus       171 aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~  249 (291)
                      ||++++.+.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++ |.++++ +|+++++++++  
T Consensus       323 AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~~--  397 (795)
T 3slk_A          323 AASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLASSRT--  397 (795)
T ss_dssp             HHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEECSSS--
T ss_pred             HHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheeecCC--
Confidence            99999999999999989999999999999986 9999999999999999 899998655 666665 99999999876  


Q ss_pred             chHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .++.+.+++.+++ ++|+|||++|+ +.+..++++++++|++
T Consensus       398 ~~~~~~i~~~t~g~GvDvVld~~gg-~~~~~~l~~l~~~Gr~  438 (795)
T 3slk_A          398 CDFEQQFLGATGGRGVDVVLNSLAG-EFADASLRMLPRGGRF  438 (795)
T ss_dssp             STHHHHHHHHSCSSCCSEEEECCCT-TTTHHHHTSCTTCEEE
T ss_pred             hhHHHHHHHHcCCCCeEEEEECCCc-HHHHHHHHHhcCCCEE
Confidence            7899999999998 99999999998 6789999999999986

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=7.4e-36  Score=266.93  Aligned_cols=209  Identities=21%  Similarity=0.235  Sum_probs=184.8

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |||+++.+++++..+++.|.|+|+++||+|||.+++||++|++.+.|.+    .+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            6899999998876677999999999999999999999999999998865    468999999999998           9


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      |||+....                              +                  |+|+||+.++.++++++|+++++
T Consensus        70 drV~~~~~------------------------------~------------------G~~aey~~v~~~~~~~iP~~~~~  101 (302)
T 1iz0_A           70 RRYAALVP------------------------------Q------------------GGLAERVAVPKGALLPLPEGLSP  101 (302)
T ss_dssp             EEEEEECS------------------------------S------------------CCSBSEEEEEGGGCEECCTTCCH
T ss_pred             cEEEEecC------------------------------C------------------cceeeEEEEcHHHcEeCCCCCCH
Confidence            99976521                              1                  49999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      ++||++++++.|||+++.+.. ++++++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|++.++++++
T Consensus       102 ~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~  179 (302)
T 1iz0_A          102 EEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAE  179 (302)
T ss_dssp             HHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGG
T ss_pred             HHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCc
Confidence            999999999999999987777 999999999997 9999999999999999 9999999999999999999999887641


Q ss_pred             CCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       ..++.+.+     +++|++|| +|+ ..++.++++++++|++
T Consensus       180 -~~~~~~~~-----~~~d~vid-~g~-~~~~~~~~~l~~~G~~  214 (302)
T 1iz0_A          180 -VPERAKAW-----GGLDLVLE-VRG-KEVEESLGLLAHGGRL  214 (302)
T ss_dssp             -HHHHHHHT-----TSEEEEEE-CSC-TTHHHHHTTEEEEEEE
T ss_pred             -chhHHHHh-----cCceEEEE-CCH-HHHHHHHHhhccCCEE
Confidence             02333332     57999999 998 6889999999999986

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=7.2e-35  Score=263.90  Aligned_cols=224  Identities=20%  Similarity=0.244  Sum_probs=192.4

Q ss_pred             ceeeeEEEEecC--C----CCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCCCC
Q 022819           10 VITCKAAVAWGA--G----QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        10 ~~~~~a~~~~~~--~----~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      .++||+|++.+.  +    +.++++++|.|+|+++||||||.+++||+.|... .....+|.++|||++|+|++.  +++
T Consensus         5 ~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~~~~~p~~~g~e~~G~Vv~~--~v~   81 (333)
T 1v3u_A            5 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SKRLKEGAVMMGQQVARVVES--KNS   81 (333)
T ss_dssp             CCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TTTCCTTSBCCCCEEEEEEEE--SCT
T ss_pred             cccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cCcCCCCcccccceEEEEEec--CCC
Confidence            467999999874  3    3389999999999999999999999999988732 232356789999999999994  578


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      +|++||||+..                                                   |+|++|+.++.++++++|
T Consensus        82 ~~~vGdrV~~~---------------------------------------------------g~~aey~~v~~~~~~~iP  110 (333)
T 1v3u_A           82 AFPAGSIVLAQ---------------------------------------------------SGWTTHFISDGKGLEKLL  110 (333)
T ss_dssp             TSCTTCEEEEC---------------------------------------------------CCSBSEEEESSTTEEECC
T ss_pred             CCCCCCEEEec---------------------------------------------------CceEEEEEechHHeEEcC
Confidence            89999999643                                                   389999999999999999


Q ss_pred             CC----CChhh-hhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          164 SI----APLEK-ICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       164 ~~----~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      ++    +++++ +|+++++++|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++
T Consensus       111 ~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~  189 (333)
T 1v3u_A          111 TEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI  189 (333)
T ss_dssp             --CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred             cccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc
Confidence            97    88887 47888899999999888899999999999997 9999999999999999 999999999999999999


Q ss_pred             CCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          238 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       238 g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      |++.++|+.+ ..++.+.+.+.+.+++|++||++|. ..+..++++++++|++
T Consensus       190 g~~~~~d~~~-~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~  240 (333)
T 1v3u_A          190 GFDAAFNYKT-VNSLEEALKKASPDGYDCYFDNVGG-EFLNTVLSQMKDFGKI  240 (333)
T ss_dssp             TCSEEEETTS-CSCHHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEEEEE
T ss_pred             CCcEEEecCC-HHHHHHHHHHHhCCCCeEEEECCCh-HHHHHHHHHHhcCCEE
Confidence            9988888753 2467777777776689999999998 5689999999999986

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=4.8e-34  Score=259.60  Aligned_cols=225  Identities=20%  Similarity=0.249  Sum_probs=189.4

Q ss_pred             ceeeeEEEEec-----CCC-CeEEE--EeecCC-CCCCcEEEEEeEeeCChhhhhhhcccC-------CCCcccCcceeE
Q 022819           10 VITCKAAVAWG-----AGQ-PLVVE--EVEVNP-PQPEEIRIKVVCTSLCRSDITAWETQA-------IFPRIFGHEASG   73 (291)
Q Consensus        10 ~~~~~a~~~~~-----~~~-~~~~~--~~~~~~-~~~~eVlVkv~~~~i~~~D~~~~~g~~-------~~p~~~G~e~~G   73 (291)
                      +.+||++++..     |+. .++++  ++|.|. |+++||||||.++++|+.|. .+.|..       .+|.++|||.+|
T Consensus         2 ~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G   80 (345)
T 2j3h_A            2 TATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQG   80 (345)
T ss_dssp             EEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEE
T ss_pred             CccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeec
Confidence            45677777664     442 38888  888887 89999999999999998875 344432       258899999999


Q ss_pred             EEEE--cCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeE
Q 022819           74 IVES--VGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEY  151 (291)
Q Consensus        74 ~V~~--vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  151 (291)
                      ++++  +|+++++|++||||+..                                                   |+|++|
T Consensus        81 ~~~~GvV~~~v~~~~vGdrV~~~---------------------------------------------------g~~aey  109 (345)
T 2j3h_A           81 YGVSRIIESGHPDYKKGDLLWGI---------------------------------------------------VAWEEY  109 (345)
T ss_dssp             EEEEEEEEECSTTCCTTCEEEEE---------------------------------------------------EESBSE
T ss_pred             ceEEEEEecCCCCCCCCCEEEee---------------------------------------------------cCceeE
Confidence            9999  99999999999999643                                                   489999


Q ss_pred             EEeeccc--eEECCC---CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc
Q 022819          152 TVVHSGC--AVKVSS---IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD  225 (291)
Q Consensus       152 ~~~~~~~--~~~ip~---~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~  225 (291)
                      +.++.+.  ++++|+   .++++ +|++++++.|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|++++
T Consensus       110 ~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~  187 (345)
T 2j3h_A          110 SVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSA  187 (345)
T ss_dssp             EEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             EEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            9998876  999996   35555 67788899999999888899999999999997 9999999999999999 999999


Q ss_pred             CChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          226 TNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       226 ~~~~~~~~a~-~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++++++.++ ++|++.++|+++ ..++.+.+++.+.+++|++||++|. ..++.++++++++|++
T Consensus       188 ~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~  251 (345)
T 2j3h_A          188 GSKEKVDLLKTKFGFDDAFNYKE-ESDLTAALKRCFPNGIDIYFENVGG-KMLDAVLVNMNMHGRI  251 (345)
T ss_dssp             SSHHHHHHHHHTSCCSEEEETTS-CSCSHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEEEEE
T ss_pred             CCHHHHHHHHHHcCCceEEecCC-HHHHHHHHHHHhCCCCcEEEECCCH-HHHHHHHHHHhcCCEE
Confidence            9999999998 799998888764 2356677777765589999999998 6889999999999986

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.94  E-value=4.8e-26  Score=248.43  Aligned_cols=204  Identities=19%  Similarity=0.183  Sum_probs=178.1

Q ss_pred             eEEEEeecCC-CC--CCcEEEEEeEeeCChhhhhhhcccCC----------CCcccCcceeEEEEEcCCCCCCCCCCCEE
Q 022819           25 LVVEEVEVNP-PQ--PEEIRIKVVCTSLCRSDITAWETQAI----------FPRIFGHEASGIVESVGPGVTEFNEGEHV   91 (291)
Q Consensus        25 ~~~~~~~~~~-~~--~~eVlVkv~~~~i~~~D~~~~~g~~~----------~p~~~G~e~~G~V~~vG~~~~~~~~GdrV   91 (291)
                      +.+.+.+... +.  ++||+|||.++++|+.|+.++.|...          .|.++|+|++|+|.          +||||
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEE
Confidence            5666655433 33  78999999999999999999887641          24689999999873          79999


Q ss_pred             EeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCChhhh
Q 022819           92 LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKI  171 (291)
Q Consensus        92 ~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a  171 (291)
                      +....                              +                  |+|++|+.++.+.++++|+++++++|
T Consensus      1614 ~g~~~------------------------------~------------------G~~Aeyv~vp~~~v~~iPd~ls~~eA 1645 (2512)
T 2vz8_A         1614 MGMVP------------------------------A------------------EGLATSVLLLQHATWEVPSTWTLEEA 1645 (2512)
T ss_dssp             EEECS------------------------------S------------------CCSBSEEECCGGGEEECCTTSCHHHH
T ss_pred             EEeec------------------------------C------------------CceeeEEEcccceEEEeCCCCCHHHH
Confidence            65411                              1                  48999999999999999999999999


Q ss_pred             hhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCC
Q 022819          172 CLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPN  246 (291)
Q Consensus       172 a~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~  246 (291)
                      |++++.+.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++.+++|++++++    +|++++++++
T Consensus      1646 A~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~ 1724 (2512)
T 2vz8_A         1646 ASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSR 1724 (2512)
T ss_dssp             TTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESS
T ss_pred             HHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCC
Confidence            9999999999999989999999999999976 9999999999999999 89999999999999986    7888899887


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +  .++.+.+++.+++ ++|+|||++++ +.+..++++++++|++
T Consensus      1725 ~--~~~~~~i~~~t~g~GvDvVld~~g~-~~l~~~l~~L~~~Gr~ 1766 (2512)
T 2vz8_A         1725 D--TSFEQHVLRHTAGKGVDLVLNSLAE-EKLQASVRCLAQHGRF 1766 (2512)
T ss_dssp             S--SHHHHHHHHTTTSCCEEEEEECCCH-HHHHHHHTTEEEEEEE
T ss_pred             C--HHHHHHHHHhcCCCCceEEEECCCc-hHHHHHHHhcCCCcEE
Confidence            6  7888999999888 99999999985 7899999999999986

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.78  E-value=1.1e-18  Score=145.90  Aligned_cols=130  Identities=21%  Similarity=0.249  Sum_probs=106.4

Q ss_pred             cceEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          157 GCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       157 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      ++++++|+++++++||++++++.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4678999999999999999999999999888889999999999985 9999999999999999 9999999999999999


Q ss_pred             HcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          236 AFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       236 ~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|++.+++.++  .++.+.+.+.+.+ ++|++||++|. ..++.++++|+++|++
T Consensus        81 ~~g~~~~~d~~~--~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~l~~~G~~  133 (198)
T 1pqw_A           81 RLGVEYVGDSRS--VDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPGGRF  133 (198)
T ss_dssp             TTCCSEEEETTC--STHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEEEEE
T ss_pred             HcCCCEEeeCCc--HHHHHHHHHHhCCCCCeEEEECCch-HHHHHHHHHhccCCEE
Confidence            999988888765  5677778777766 89999999986 6789999999999986

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.14  E-value=3.7e-11  Score=103.00  Aligned_cols=162  Identities=18%  Similarity=0.150  Sum_probs=104.7

Q ss_pred             CCCCCEEEeec-------ccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeecc
Q 022819           85 FNEGEHVLTVF-------IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG  157 (291)
Q Consensus        85 ~~~GdrV~~~~-------~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  157 (291)
                      +++||||++.+       ...|+.|..|..+..+.|..... .+|                        ...      ..
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~-~~G------------------------~~~------~~   52 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK-PEG------------------------VKI------NG   52 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC-CTT------------------------EEE------TT
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC-CCC------------------------CEE------EE
Confidence            89999999998       56777888887777777765421 011                        211      23


Q ss_pred             ceEECCCCCChhhhhhhh-----hhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 022819          158 CAVKVSSIAPLEKICLLS-----CGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE  232 (291)
Q Consensus       158 ~~~~ip~~~~~~~aa~~~-----~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~  232 (291)
                      ..++-|+.....+.+...     .....+  .+....++.++++||.+|+| .|..++.+++. +. ++++++.+++.++
T Consensus        53 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~  127 (248)
T 2yvl_A           53 FEVYRPTLEEIILLGFERKTQIIYPKDSF--YIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYK  127 (248)
T ss_dssp             EEEECCCHHHHHHHTSCCSSCCCCHHHHH--HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHH
T ss_pred             EEEeCCCHHHHHHhcCcCCCCcccchhHH--HHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHH
Confidence            334444332222221110     011112  24566778899999999998 68888999988 66 9999999999988


Q ss_pred             HHHHc----CC-c-e-EeCCCCCCchHHHHHHHH-hcCCccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          233 KAKAF----GV-T-E-FLNPNDNNEPVQQVIKRI-TDGGADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       233 ~a~~~----g~-~-~-~i~~~~~~~~~~~~~~~~-~~g~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                      .+++.    +. . . ++..+.  .+      .. ..+.+|+|+...+.+ ..++.+.+.|+++|++
T Consensus       128 ~a~~~~~~~~~~~~~~~~~~d~--~~------~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l  186 (248)
T 2yvl_A          128 TAQKNLKKFNLGKNVKFFNVDF--KD------AEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPV  186 (248)
T ss_dssp             HHHHHHHHTTCCTTEEEECSCT--TT------SCCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEE
T ss_pred             HHHHHHHHcCCCCcEEEEEcCh--hh------cccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEE
Confidence            88763    43 1 1 222111  11      01 123799999888766 7899999999999986

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.75  E-value=7.8e-11  Score=108.90  Aligned_cols=160  Identities=18%  Similarity=0.179  Sum_probs=114.9

Q ss_pred             ccCcceeEEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCc
Q 022819           66 IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAV  145 (291)
Q Consensus        66 ~~G~e~~G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~  145 (291)
                      ..|++.++.|.++|+++.++.+|+++++-+...                       ++.                .....
T Consensus        76 ~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~-----------------------~~~----------------~~~~~  116 (404)
T 1gpj_A           76 KRGSEAVRHLFRVASGLESMMVGEQEILRQVKK-----------------------AYD----------------RAARL  116 (404)
T ss_dssp             EEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH-----------------------HHH----------------HHHHH
T ss_pred             ecCchHhhhheeeccCCCCCcCCcchhHHHHHH-----------------------HHH----------------HHHHc
Confidence            468999999999999999999999874321110                       000                00001


Q ss_pred             cceeeEEEeeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhc---CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEE
Q 022819          146 SSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA---DISKGSTVVIFGLGTVGLSVAQGAKARGASRII  222 (291)
Q Consensus       146 g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi  222 (291)
                      |++++|+......++.+|+.++.+.++... +..++|.++....   .-.++++|+|+|+|.+|.++++.++.+|+.+|+
T Consensus       117 G~~~~~~~~~~~~a~~~~k~v~~~~~~~~~-~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~  195 (404)
T 1gpj_A          117 GTLDEALKIVFRRAINLGKRAREETRISEG-AVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVL  195 (404)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHSSTTCS-CCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEE
T ss_pred             CCchHHHHHHHHHHhhhhccCcchhhhcCC-CccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEE
Confidence            356777777778888899888877766533 6667777653322   125799999999999999999999999988899


Q ss_pred             EEcCChhhH-HHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChH
Q 022819          223 GVDTNPEKC-EKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG  275 (291)
Q Consensus       223 ~~~~~~~~~-~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~  275 (291)
                      +++++.++. ++++++|+. ++++    .++.+.+     .++|+|+++++...
T Consensus       196 v~~r~~~ra~~la~~~g~~-~~~~----~~l~~~l-----~~aDvVi~at~~~~  239 (404)
T 1gpj_A          196 VANRTYERAVELARDLGGE-AVRF----DELVDHL-----ARSDVVVSATAAPH  239 (404)
T ss_dssp             EECSSHHHHHHHHHHHTCE-ECCG----GGHHHHH-----HTCSEEEECCSSSS
T ss_pred             EEeCCHHHHHHHHHHcCCc-eecH----HhHHHHh-----cCCCEEEEccCCCC
Confidence            999999886 678888875 3433    2333322     26899999998643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.48  E-value=2.6e-07  Score=83.96  Aligned_cols=89  Identities=22%  Similarity=0.233  Sum_probs=69.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~--~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      +++|+|+|+|++|++++++++.+|+ +|+++++++++++.+++++...  +++.+.  .++.+.+.     ++|+|++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~DvVI~~~  238 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS--AEIETAVA-----EADLLIGAV  238 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH--HHHHHHHH-----TCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH--HHHHHHHc-----CCCEEEECC
Confidence            4899999999999999999999999 9999999999999998876543  333321  33333332     689999999


Q ss_pred             CChHH------HHHHHHhhccCccc
Q 022819          272 GDTGM------ITTALQSCCDVRSI  290 (291)
Q Consensus       272 g~~~~------~~~~~~~l~~~G~i  290 (291)
                      +.+..      .+..++.++++|++
T Consensus       239 ~~~~~~~~~li~~~~~~~~~~g~~i  263 (361)
T 1pjc_A          239 LVPGRRAPILVPASLVEQMRTGSVI  263 (361)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEE
T ss_pred             CcCCCCCCeecCHHHHhhCCCCCEE
Confidence            87542      56778889988865

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.32  E-value=1.7e-06  Score=79.03  Aligned_cols=91  Identities=21%  Similarity=0.226  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|+....+... ..++.+.+.     ++|+|++++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~-~~~l~~~l~-----~aDvVi~~~  239 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS-AYELEGAVK-----RADLVIGAV  239 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC-HHHHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC-HHHHHHHHc-----CCCEEEECC
Confidence            57899999999999999999999999 99999999999988876 67654332211 133333332     589999999


Q ss_pred             CChHH------HHHHHHhhccCccc
Q 022819          272 GDTGM------ITTALQSCCDVRSI  290 (291)
Q Consensus       272 g~~~~------~~~~~~~l~~~G~i  290 (291)
                      +.+..      .+..++.|+++|.|
T Consensus       240 ~~p~~~t~~li~~~~l~~mk~g~~i  264 (377)
T 2vhw_A          240 LVPGAKAPKLVSNSLVAHMKPGAVL  264 (377)
T ss_dssp             CCTTSCCCCCBCHHHHTTSCTTCEE
T ss_pred             CcCCCCCcceecHHHHhcCCCCcEE
Confidence            86543      57788899998865

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.30  E-value=1.9e-06  Score=78.94  Aligned_cols=96  Identities=18%  Similarity=0.261  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCC-------------Cc----hHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDN-------------NE----PVQQ  254 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~-------------~~----~~~~  254 (291)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++++.++++|+..+ ++..+.             +.    ...+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999 89999999999999999998654 233110             00    0122


Q ss_pred             HHHHHhcCCccEEEEcc---CCh--HH-HHHHHHhhccCccc
Q 022819          255 VIKRITDGGADYSFECI---GDT--GM-ITTALQSCCDVRSI  290 (291)
Q Consensus       255 ~~~~~~~g~~d~vld~~---g~~--~~-~~~~~~~l~~~G~i  290 (291)
                      .+.+... ++|+|++++   |.+  .. .++.++.|++++.|
T Consensus       250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vi  290 (384)
T 1l7d_A          250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVI  290 (384)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEE
T ss_pred             HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEE
Confidence            2444433 699999999   532  22 37788899988765

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.28  E-value=2.3e-06  Score=80.44  Aligned_cols=98  Identities=23%  Similarity=0.364  Sum_probs=76.4

Q ss_pred             hhhHhHHHhhc-CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHH
Q 022819          179 SAGLGAAWNVA-DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       179 ~ta~~~l~~~~-~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~  257 (291)
                      .+.|.++.+.. ...++++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++++|++ +++       +.+.+ 
T Consensus       258 ~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~-------l~e~l-  327 (494)
T 3ce6_A          258 HSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT-------VEEAI-  327 (494)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC-------HHHHG-
T ss_pred             hhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec-------HHHHH-
Confidence            34455532222 26789999999999999999999999999 999999999999899999985 321       11111 


Q ss_pred             HHhcCCccEEEEccCChHHHH-HHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGDTGMIT-TALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~~~~~~-~~~~~l~~~G~i  290 (291)
                          .++|+|+++++....+. ..++.|+++|+|
T Consensus       328 ----~~aDvVi~atgt~~~i~~~~l~~mk~ggil  357 (494)
T 3ce6_A          328 ----GDADIVVTATGNKDIIMLEHIKAMKDHAIL  357 (494)
T ss_dssp             ----GGCSEEEECSSSSCSBCHHHHHHSCTTCEE
T ss_pred             ----hCCCEEEECCCCHHHHHHHHHHhcCCCcEE
Confidence                26899999999876665 788999999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.26  E-value=3.4e-06  Score=76.80  Aligned_cols=91  Identities=23%  Similarity=0.261  Sum_probs=67.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|.....+..+ ..++.+.+.     ++|+|++++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~~~-----~~DvVi~~~  237 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT-EANIKKSVQ-----HADLLIGAV  237 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC-HHHHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC-HHHHHHHHh-----CCCEEEECC
Confidence            45899999999999999999999999 99999999999888766 77654333221 133333332     589999999


Q ss_pred             CChHH------HHHHHHhhccCccc
Q 022819          272 GDTGM------ITTALQSCCDVRSI  290 (291)
Q Consensus       272 g~~~~------~~~~~~~l~~~G~i  290 (291)
                      +.+..      .+..++.++++|+|
T Consensus       238 g~~~~~~~~li~~~~l~~mk~gg~i  262 (369)
T 2eez_A          238 LVPGAKAPKLVTRDMLSLMKEGAVI  262 (369)
T ss_dssp             C-------CCSCHHHHTTSCTTCEE
T ss_pred             CCCccccchhHHHHHHHhhcCCCEE
Confidence            97532      57788899988865

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.18  E-value=2.1e-06  Score=74.70  Aligned_cols=97  Identities=16%  Similarity=0.239  Sum_probs=69.4

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc----CC-ce--EeCCCCCCchHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF----GV-TE--FLNPNDNNEPVQQVI  256 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~----g~-~~--~i~~~~~~~~~~~~~  256 (291)
                      +.....+.++++||.+|+|. |..++.+++..+ ..++++++.+++.++.+++.    +. +.  ++..+     +.+. 
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~~-  176 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD-----ISEG-  176 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC-----GGGC-
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECC-----HHHc-
Confidence            45667788999999999886 888888998864 23999999999988887653    43 11  22221     1111 


Q ss_pred             HHHhcCCccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                        +..+.+|+|+-....+ ..+..+.+.|+++|++
T Consensus       177 --~~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l  209 (277)
T 1o54_A          177 --FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRF  209 (277)
T ss_dssp             --CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEE
T ss_pred             --ccCCccCEEEECCcCHHHHHHHHHHHcCCCCEE
Confidence              1223799988766654 6789999999999975

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.14  E-value=8e-06  Score=75.11  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe-CCCC---C--------CchH----HHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPND---N--------NEPV----QQVI  256 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i-~~~~---~--------~~~~----~~~~  256 (291)
                      ++++|+|+|+|.+|+.++++|+.+|+ +|++++++.++++.++++|+..+. +..+   .        +.++    ...+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            57899999999999999999999999 999999999999999999886442 2110   0        0111    1123


Q ss_pred             HHHhcCCccEEEEccCCh-----HH-HHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFECIGDT-----GM-ITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~~-----~~-~~~~~~~l~~~G~i  290 (291)
                      .+... ++|+|+++++.+     .. .++.++.|++++.|
T Consensus       250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vI  288 (401)
T 1x13_A          250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAGSVI  288 (401)
T ss_dssp             HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEE
T ss_pred             HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEE
Confidence            33332 589999995332     22 36788899988865

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.07  E-value=1.2e-05  Score=63.71  Aligned_cols=91  Identities=21%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      ..++++|+|+|+|.+|..+++.++..|. +|+++++++++.+.++ +.|...+. .+.  .+ .+.+.+....++|+||.
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~~-~d~--~~-~~~l~~~~~~~ad~Vi~   90 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTVV-GDA--AE-FETLKECGMEKADMVFA   90 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEEE-SCT--TS-HHHHHTTTGGGCSEEEE
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEEE-ecC--CC-HHHHHHcCcccCCEEEE
Confidence            4567899999999999999999999998 9999999999888776 66665332 221  11 12333321237999999


Q ss_pred             ccCChHHHHHHHHhhcc
Q 022819          270 CIGDTGMITTALQSCCD  286 (291)
Q Consensus       270 ~~g~~~~~~~~~~~l~~  286 (291)
                      +++.......+...+++
T Consensus        91 ~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           91 FTNDDSTNFFISMNARY  107 (155)
T ss_dssp             CSSCHHHHHHHHHHHHH
T ss_pred             EeCCcHHHHHHHHHHHH
Confidence            99986665666666554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.07  E-value=8.4e-06  Score=71.68  Aligned_cols=94  Identities=16%  Similarity=0.191  Sum_probs=71.6

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce--EeCCCCCCchHHHHHHHHh
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE--FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~--~i~~~~~~~~~~~~~~~~~  260 (291)
                      ..++++++++||.+|+|+.++.++.+|+..|+ +|++++.+++.++.+++.    |.+.  ++.-+.  .       ++.
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa--~-------~l~  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE--T-------VID  185 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG--G-------GGG
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch--h-------hCC
Confidence            34678999999999999888888888988898 999999999999988764    5422  222111  1       123


Q ss_pred             cCCccEEEEccCCh---HHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGDT---GMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~~---~~~~~~~~~l~~~G~i  290 (291)
                      ++.||+|+.....+   ..++.+.+.|++||+|
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~L  218 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRI  218 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEE
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEE
Confidence            45899999765543   6799999999999986

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.06  E-value=4.1e-06  Score=72.25  Aligned_cols=89  Identities=16%  Similarity=0.080  Sum_probs=65.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      .++.+||.+|+|. |..+..+++.. +. ++++++.+++.++.+++.+... ++..+.  .++     .+..+.+|+|+.
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~--~~~-----~~~~~~fD~v~~  154 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS--HRL-----PFSDTSMDAIIR  154 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT--TSC-----SBCTTCEEEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch--hhC-----CCCCCceeEEEE
Confidence            6788999999987 88888999986 66 9999999999999998765432 222221  111     112247999995


Q ss_pred             ccCChHHHHHHHHhhccCccc
Q 022819          270 CIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       270 ~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       ...+..+..+.+.|+++|++
T Consensus       155 -~~~~~~l~~~~~~L~pgG~l  174 (269)
T 1p91_A          155 -IYAPCKAEELARVVKPGGWV  174 (269)
T ss_dssp             -ESCCCCHHHHHHHEEEEEEE
T ss_pred             -eCChhhHHHHHHhcCCCcEE
Confidence             44456789999999999976

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.97  E-value=2.3e-05  Score=71.79  Aligned_cols=96  Identities=16%  Similarity=0.204  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC-CC---C----------CCchH----HH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN-PN---D----------NNEPV----QQ  254 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~-~~---~----------~~~~~----~~  254 (291)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|++++++.++++.++++|+..+.. ..   +          ..+.+    ..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            57899999999999999999999999 9999999999999999998763221 00   0          00111    12


Q ss_pred             HHHHHhcCCccEEEEccCChH------HHHHHHHhhccCccc
Q 022819          255 VIKRITDGGADYSFECIGDTG------MITTALQSCCDVRSI  290 (291)
Q Consensus       255 ~~~~~~~g~~d~vld~~g~~~------~~~~~~~~l~~~G~i  290 (291)
                      .+.+.. ..+|+||.++..+.      .-++.++.++++..|
T Consensus       268 ~l~e~l-~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVI  308 (405)
T 4dio_A          268 LVAEHI-AKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVV  308 (405)
T ss_dssp             HHHHHH-HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEE
T ss_pred             HHHHHh-cCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEE
Confidence            233322 26999999864321      346778888887654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.89  E-value=1.8e-05  Score=71.79  Aligned_cols=95  Identities=22%  Similarity=0.309  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC-------CC----Cc----hHHHHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN-------DN----NE----PVQQVIK  257 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~-------~~----~~----~~~~~~~  257 (291)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|++++++.++++.++++|+..+ +..       ..    .+    .....+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~-~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWL-DLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEEC-CCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE-eccccccccccchhhhhHHHHhhhHHHHH
Confidence            67899999999999999999999999 89999999999999999987542 210       00    00    0112233


Q ss_pred             HHhcCCccEEEEccCChH------HHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGDTG------MITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~~~------~~~~~~~~l~~~G~i  290 (291)
                      +.. ..+|+||.++..+.      ..++.++.+++++.|
T Consensus       261 e~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVI  298 (381)
T 3p2y_A          261 DAI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVV  298 (381)
T ss_dssp             HHH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEE
T ss_pred             HHH-hcCCEEEECCCCCCcccceeecHHHHhcCCCCcEE
Confidence            322 37999999863321      246788888887654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.88  E-value=0.0001  Score=54.72  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=56.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      ..+|+|+|+|.+|..+++.+...|..+|+++++++++.+.++..+...+ .|..+  .   +.+.+.. .++|+||++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~--~---~~~~~~~-~~~d~vi~~~~   78 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKD--E---AGLAKAL-GGFDAVISAAP   78 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTC--H---HHHHHHT-TTCSEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCC--H---HHHHHHH-cCCCEEEECCC
Confidence            4689999999999999999999993389999999999888876665543 23321  2   2333332 27899999998


Q ss_pred             ChHH
Q 022819          273 DTGM  276 (291)
Q Consensus       273 ~~~~  276 (291)
                      ....
T Consensus        79 ~~~~   82 (118)
T 3ic5_A           79 FFLT   82 (118)
T ss_dssp             GGGH
T ss_pred             chhh
Confidence            6433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.77  E-value=0.00018  Score=58.28  Aligned_cols=88  Identities=20%  Similarity=0.320  Sum_probs=64.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHH-hcCCccEEEEc
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRI-TDGGADYSFEC  270 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g~~~~i-~~~~~~~~~~~~~~~~-~~g~~d~vld~  270 (291)
                      +++|+|+|.|.+|..+++.++.. |. .|+++++++++.+.+++.|...+. |..+  .+   .+.+. ...++|+|+.+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~--~~---~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD--PD---FWERILDTGHVKLVLLA  112 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC--HH---HHHTBCSCCCCCEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC--HH---HHHhccCCCCCCEEEEe
Confidence            56899999999999999999998 98 899999999999999888876543 3322  22   33443 12379999999


Q ss_pred             cCChHHHHHHHHhhccC
Q 022819          271 IGDTGMITTALQSCCDV  287 (291)
Q Consensus       271 ~g~~~~~~~~~~~l~~~  287 (291)
                      ++.......+...++..
T Consensus       113 ~~~~~~~~~~~~~~~~~  129 (183)
T 3c85_A          113 MPHHQGNQTALEQLQRR  129 (183)
T ss_dssp             CSSHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHH
Confidence            99755544444555443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.71  E-value=3.1e-05  Score=69.26  Aligned_cols=100  Identities=18%  Similarity=0.132  Sum_probs=65.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHc----C------------Cc-eEeCCC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----G------------VT-EFLNPN  246 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~----g------------~~-~~i~~~  246 (291)
                      +.+...+.++++||-+|+|. |..++.+++..|. .+|++++.+++..+.+++.    +            .. .++..+
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d  175 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence            34556788999999999875 7888888887763 4999999999988887652    1            11 122222


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                      .  .+.   +..+..+.+|+|+-....+ ..+..+.+.|+++|++
T Consensus       176 ~--~~~---~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~l  215 (336)
T 2b25_A          176 I--SGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVC  215 (336)
T ss_dssp             T--TCC---C-------EEEEEECSSSTTTTHHHHGGGEEEEEEE
T ss_pred             h--HHc---ccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEE
Confidence            1  111   1112223689888655543 4588999999999976

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.68  E-value=0.00011  Score=62.57  Aligned_cols=97  Identities=16%  Similarity=0.159  Sum_probs=69.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc----CCce---EeCCCCCCchHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF----GVTE---FLNPNDNNEPVQQVI  256 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~----g~~~---~i~~~~~~~~~~~~~  256 (291)
                      +....++.++++||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.    |...   ++..+     +.+  
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~--  156 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD-----IYE--  156 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC-----GGG--
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc-----hhh--
Confidence            45667788999999999875 888888888853 34999999999988888653    4332   22221     111  


Q ss_pred             HHHhcCCccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                       .+..+.+|+|+-....+ ..++.+.+.|+++|++
T Consensus       157 -~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l  190 (255)
T 3mb5_A          157 -GIEEENVDHVILDLPQPERVVEHAAKALKPGGFF  190 (255)
T ss_dssp             -CCCCCSEEEEEECSSCGGGGHHHHHHHEEEEEEE
T ss_pred             -ccCCCCcCEEEECCCCHHHHHHHHHHHcCCCCEE
Confidence             12223799988876654 4799999999999976

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.66  E-value=3.1e-05  Score=60.44  Aligned_cols=85  Identities=12%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             hhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcCCceEeCCCCCCchHHHHH
Q 022819          178 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVI  256 (291)
Q Consensus       178 ~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~-a~~~g~~~~i~~~~~~~~~~~~~  256 (291)
                      +++++.++ +......+++|+|+|+|.+|...++.++..|+ +|+++++++++.+. +++++... ...    .++.+.+
T Consensus         6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~~-~~~----~~~~~~~   78 (144)
T 3oj0_A            6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEY-VLI----NDIDSLI   78 (144)
T ss_dssp             CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCEE-EEC----SCHHHHH
T ss_pred             ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCce-Eee----cCHHHHh
Confidence            34455543 33333448999999999999999999988999 59999999888764 56777533 222    2233333


Q ss_pred             HHHhcCCccEEEEccCCh
Q 022819          257 KRITDGGADYSFECIGDT  274 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~~  274 (291)
                      .     .+|+|+.+++..
T Consensus        79 ~-----~~Divi~at~~~   91 (144)
T 3oj0_A           79 K-----NNDVIITATSSK   91 (144)
T ss_dssp             H-----TCSEEEECSCCS
T ss_pred             c-----CCCEEEEeCCCC
Confidence            2     589999999974

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.64  E-value=0.00044  Score=53.55  Aligned_cols=76  Identities=17%  Similarity=0.266  Sum_probs=58.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i-~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      .++++|+|.|.+|..+++.++..|. .|+++++++++.+.+++.|...+. |..+  .+   .+++..-..+|+++-+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~~--~~---~l~~a~i~~ad~vi~~~~   80 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAAN--EE---IMQLAHLECAKWLILTIP   80 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTTS--HH---HHHHTTGGGCSEEEECCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCCC--HH---HHHhcCcccCCEEEEECC
Confidence            4679999999999999999999999 999999999999999988876543 2221  32   334332237899999999


Q ss_pred             ChH
Q 022819          273 DTG  275 (291)
Q Consensus       273 ~~~  275 (291)
                      ...
T Consensus        81 ~~~   83 (140)
T 3fwz_A           81 NGY   83 (140)
T ss_dssp             CHH
T ss_pred             ChH
Confidence            743

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.62  E-value=0.00016  Score=66.50  Aligned_cols=93  Identities=20%  Similarity=0.324  Sum_probs=69.2

Q ss_pred             HHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC
Q 022819          184 AAWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       184 ~l~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ++.+..+ .-.|++++|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.       ++    .+.. .
T Consensus       209 gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~-v~-------~L----eeal-~  274 (435)
T 3gvp_A          209 GLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFR-LV-------KL----NEVI-R  274 (435)
T ss_dssp             HHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC-------CH----HHHT-T
T ss_pred             HHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCE-ec-------cH----HHHH-h
Confidence            3334333 4589999999999999999999999999 999999988877777777653 11       12    2221 2


Q ss_pred             CccEEEEccCChHHHH-HHHHhhccCccc
Q 022819          263 GADYSFECIGDTGMIT-TALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~~~~~~-~~~~~l~~~G~i  290 (291)
                      ..|+|+.|.|....+. +.++.|++++.|
T Consensus       275 ~ADIVi~atgt~~lI~~e~l~~MK~gail  303 (435)
T 3gvp_A          275 QVDIVITCTGNKNVVTREHLDRMKNSCIV  303 (435)
T ss_dssp             TCSEEEECSSCSCSBCHHHHHHSCTTEEE
T ss_pred             cCCEEEECCCCcccCCHHHHHhcCCCcEE
Confidence            6899999988666655 788888888654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.61  E-value=0.00016  Score=62.48  Aligned_cols=98  Identities=17%  Similarity=0.215  Sum_probs=68.7

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc-----C--Cce--EeCCCCCCchHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF-----G--VTE--FLNPNDNNEPVQQ  254 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~-----g--~~~--~i~~~~~~~~~~~  254 (291)
                      +.....+.++++||.+|+| .|..++.+++..+ ..++++++.+++..+.+++.     |  ...  ++..+.  .+.  
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~--~~~--  165 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL--ADS--  165 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG--GGC--
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch--Hhc--
Confidence            4556678999999999988 7888888888753 23999999999988887653     4  222  222211  110  


Q ss_pred             HHHHHhcCCccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          255 VIKRITDGGADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       255 ~~~~~~~g~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                         .+..+.+|+|+.....+ ..+..+.+.|+++|++
T Consensus       166 ---~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l  199 (280)
T 1i9g_A          166 ---ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVL  199 (280)
T ss_dssp             ---CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEE
T ss_pred             ---CCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEE
Confidence               01123799888766654 6789999999999975

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.61  E-value=0.0005  Score=53.05  Aligned_cols=76  Identities=20%  Similarity=0.341  Sum_probs=57.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i-~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      ..+++|+|+|.+|..+++.+...|. .|+++++++++.+.+++.+...+. |..+  .+   .+++.....+|+++.+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~--~~---~l~~~~~~~~d~vi~~~~   79 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTD--ES---FYRSLDLEGVSAVLITGS   79 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTC--HH---HHHHSCCTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCC--HH---HHHhCCcccCCEEEEecC
Confidence            4679999999999999999999999 899999999999988887765432 2221  22   344432237999999999


Q ss_pred             ChH
Q 022819          273 DTG  275 (291)
Q Consensus       273 ~~~  275 (291)
                      ...
T Consensus        80 ~~~   82 (141)
T 3llv_A           80 DDE   82 (141)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            643

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.58  E-value=0.00019  Score=63.04  Aligned_cols=88  Identities=19%  Similarity=0.259  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      -++++|+|+|.|.+|..+++.++.+|+ +|++++++.++.+.++++|+.. ++.    .++    .++. ..+|+|+.++
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~----~~l----~~~l-~~aDvVi~~~  221 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHI----SKA----AQEL-RDVDVCINTI  221 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEG----GGH----HHHT-TTCSEEEECC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cCh----hhH----HHHh-cCCCEEEECC
Confidence            368999999999999999999999999 9999999988877777787643 222    222    2221 3689999998


Q ss_pred             CChHHHHHHHHhhccCccc
Q 022819          272 GDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       272 g~~~~~~~~~~~l~~~G~i  290 (291)
                      +....-...++.+++++.+
T Consensus       222 p~~~i~~~~l~~mk~~~~l  240 (293)
T 3d4o_A          222 PALVVTANVLAEMPSHTFV  240 (293)
T ss_dssp             SSCCBCHHHHHHSCTTCEE
T ss_pred             ChHHhCHHHHHhcCCCCEE
Confidence            7532224566778777643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.42  E-value=0.00039  Score=53.35  Aligned_cols=76  Identities=20%  Similarity=0.369  Sum_probs=54.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      .++++|+|+|.+|..+++.+...|. +|+++++++++.+.+++.+...+. .+.  .+ .+.+.+....++|+++.+++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~-~d~--~~-~~~l~~~~~~~~d~vi~~~~~   80 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI-ANA--TE-ENELLSLGIRNFEYVIVAIGA   80 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEEEE-CCT--TC-HHHHHTTTGGGCSEEEECCCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEEEE-eCC--CC-HHHHHhcCCCCCCEEEECCCC
Confidence            4679999999999999999999998 788999988887776666653332 211  11 223333322379999999997


Q ss_pred             h
Q 022819          274 T  274 (291)
Q Consensus       274 ~  274 (291)
                      .
T Consensus        81 ~   81 (144)
T 2hmt_A           81 N   81 (144)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.41  E-value=0.00033  Score=61.64  Aligned_cols=88  Identities=22%  Similarity=0.291  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      -++++++|+|.|.+|..+++.++.+|+ +|++++++.++.+.++++|+. .++.    .++    .++. ..+|+|+.++
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~----~~l----~~~l-~~aDvVi~~~  223 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT----DEL----KEHV-KDIDICINTI  223 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG----GGH----HHHS-TTCSEEEECC
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch----hhH----HHHh-hCCCEEEECC
Confidence            368899999999999999999999999 999999998887777777764 2222    222    2222 3689999998


Q ss_pred             CChHHHHHHHHhhccCccc
Q 022819          272 GDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       272 g~~~~~~~~~~~l~~~G~i  290 (291)
                      +..-.-+..++.+++++.|
T Consensus       224 p~~~i~~~~~~~mk~g~~l  242 (300)
T 2rir_A          224 PSMILNQTVLSSMTPKTLI  242 (300)
T ss_dssp             SSCCBCHHHHTTSCTTCEE
T ss_pred             ChhhhCHHHHHhCCCCCEE
Confidence            8632224456677776543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.33  E-value=0.00095  Score=54.14  Aligned_cols=95  Identities=17%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCC---------CeEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHH
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGA---------SRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRI  259 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~---------~~vi~~~~~~~~~~~a~~~g~~~~i-~~~~~~~~~~~~~~~~  259 (291)
                      .++++++||.+|+|+ |..+..+++..+.         .+|+++|.++...     +.....+ ..+.........+.+.
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~   92 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADVTDPRTSQRILEV   92 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccCCCHHHHHHHHHh
Confidence            367899999999987 8899999998873         4899999887431     1112233 2222123344444444


Q ss_pred             hcC-CccEEEE-----ccCCh------------HHHHHHHHhhccCccc
Q 022819          260 TDG-GADYSFE-----CIGDT------------GMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g-~~d~vld-----~~g~~------------~~~~~~~~~l~~~G~i  290 (291)
                      ..+ .+|+|+.     +++..            ..++.+.+.|+++|++
T Consensus        93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  141 (196)
T 2nyu_A           93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTF  141 (196)
T ss_dssp             SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            444 8999994     33332            4677889999999986

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.31  E-value=0.00036  Score=65.25  Aligned_cols=92  Identities=24%  Similarity=0.328  Sum_probs=66.4

Q ss_pred             HHhhcCC-CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCC
Q 022819          185 AWNVADI-SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       185 l~~~~~~-~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      +.+..+. -.|++++|+|+|++|+++++.++.+|+ +|+++++++.+...+...|++ +.+.    ++        ....
T Consensus       255 i~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~l----ee--------~~~~  320 (488)
T 3ond_A          255 LMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTL----ED--------VVSE  320 (488)
T ss_dssp             HHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCG----GG--------TTTT
T ss_pred             HHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCH----HH--------HHHh
Confidence            3444443 478999999999999999999999999 999999998888777777653 2211    11        1126


Q ss_pred             ccEEEEccCChHHHH-HHHHhhccCccc
Q 022819          264 ADYSFECIGDTGMIT-TALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g~~~~~~-~~~~~l~~~G~i  290 (291)
                      +|+++++.|....+. ..++.+++++.|
T Consensus       321 aDvVi~atG~~~vl~~e~l~~mk~gaiV  348 (488)
T 3ond_A          321 ADIFVTTTGNKDIIMLDHMKKMKNNAIV  348 (488)
T ss_dssp             CSEEEECSSCSCSBCHHHHTTSCTTEEE
T ss_pred             cCEEEeCCCChhhhhHHHHHhcCCCeEE
Confidence            899999888755543 367777776543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.26  E-value=0.00076  Score=62.20  Aligned_cols=86  Identities=22%  Similarity=0.338  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      .-.|++++|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.+       +.+.+     ..+|+|+.+
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~-vv~-------LeElL-----~~ADIVv~a  309 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFE-VVT-------LDDAA-----STADIVVTT  309 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE-ECC-------HHHHG-----GGCSEEEEC
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCce-ecc-------HHHHH-----hhCCEEEEC
Confidence            4589999999999999999999999999 999999888776666666653 221       21222     258999999


Q ss_pred             cCChHHH-HHHHHhhccCccc
Q 022819          271 IGDTGMI-TTALQSCCDVRSI  290 (291)
Q Consensus       271 ~g~~~~~-~~~~~~l~~~G~i  290 (291)
                      ++....+ .+.+..|++++.|
T Consensus       310 tgt~~lI~~e~l~~MK~GAIL  330 (464)
T 3n58_A          310 TGNKDVITIDHMRKMKDMCIV  330 (464)
T ss_dssp             CSSSSSBCHHHHHHSCTTEEE
T ss_pred             CCCccccCHHHHhcCCCCeEE
Confidence            8875554 5778888888654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.20  E-value=0.0018  Score=53.41  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=67.1

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc-e--EeCCCCCCchHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-E--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~-~--~i~~~~~~~~~~~~~~~  258 (291)
                      .....+.++++||-+|+|. |..++.+++. +. +|++++.+++.++.+++    .|.. .  ++..+.  .+   .+..
T Consensus        48 l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~---~~~~  119 (204)
T 3njr_A           48 LAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA--PA---ALAD  119 (204)
T ss_dssp             HHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT--TG---GGTT
T ss_pred             HHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch--hh---hccc
Confidence            4556778999999999985 8888888888 77 99999999998887765    3544 2  232221  11   1111


Q ss_pred             HhcCCccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                        ...+|+|+...+.. ..++.+.+.|+++|++
T Consensus       120 --~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~l  150 (204)
T 3njr_A          120 --LPLPEAVFIGGGGSQALYDRLWEWLAPGTRI  150 (204)
T ss_dssp             --SCCCSEEEECSCCCHHHHHHHHHHSCTTCEE
T ss_pred             --CCCCCEEEECCcccHHHHHHHHHhcCCCcEE
Confidence              13799988664432 2789999999999986

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.09  E-value=0.0013  Score=52.33  Aligned_cols=98  Identities=13%  Similarity=0.129  Sum_probs=67.5

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc-e-EeCCCCCCchHHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-E-FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~-~-~i~~~~~~~~~~~~~~~~  259 (291)
                      .+...+.++++||.+|+|. |..+..+++..+..++++++.+++.++.+++    .+.. . .+..+. ...    +.. 
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~----~~~-   90 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA-PRA----FDD-   90 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCT-TGG----GGG-
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecch-Hhh----hhc-
Confidence            4455678899999999985 8888888888743499999999998888764    3443 2 222111 111    111 


Q ss_pred             hcCCccEEEEccCC--hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIGD--TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g~--~~~~~~~~~~l~~~G~i  290 (291)
                      ..+.+|+|+.....  ...++.+.+.|+++|++
T Consensus        91 ~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l  123 (178)
T 3hm2_A           91 VPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRL  123 (178)
T ss_dssp             CCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEE
T ss_pred             cCCCCCEEEECCcccHHHHHHHHHHhcCCCCEE
Confidence            11479999965543  34789999999999986

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.07  E-value=0.00084  Score=56.66  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=66.9

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHh---
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRIT---  260 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~---  260 (291)
                      ....++++||.+|+| .|..+..+++..+ ..++++++.+++..+.+++.    |....+....  .+..+.+.++.   
T Consensus        56 ~~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~--~d~~~~~~~~~~~~  132 (239)
T 2hnk_A           56 TKISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL--GSALETLQVLIDSK  132 (239)
T ss_dssp             HHHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHCS
T ss_pred             HHhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE--CCHHHHHHHHHhhc
Confidence            344678899999987 5888889999874 23999999999988877653    5432111111  22333333321   


Q ss_pred             -----------c-CCccEEEEccCCh---HHHHHHHHhhccCccc
Q 022819          261 -----------D-GGADYSFECIGDT---GMITTALQSCCDVRSI  290 (291)
Q Consensus       261 -----------~-g~~d~vld~~g~~---~~~~~~~~~l~~~G~i  290 (291)
                                 . +.||+|+.....+   ..++.+.+.|++||.|
T Consensus       133 ~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~l  177 (239)
T 2hnk_A          133 SAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLL  177 (239)
T ss_dssp             SCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             ccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence                       1 5799998765543   5678899999999976

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.05  E-value=0.0085  Score=45.43  Aligned_cols=75  Identities=21%  Similarity=0.365  Sum_probs=53.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEe-CCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i-~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      .+|+|+|+|.+|...++.+...|. .|+++++++++.+.+++ ++...+. +..+  .   +.+.+.....+|+|+-+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~--~---~~l~~~~~~~~d~vi~~~~   78 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK--I---KTLEDAGIEDADMYIAVTG   78 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS--H---HHHHHTTTTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEEcCCCC--H---HHHHHcCcccCCEEEEeeC
Confidence            578999999999999999998998 89999999888876654 5654322 2211  2   2233322237899999998


Q ss_pred             ChH
Q 022819          273 DTG  275 (291)
Q Consensus       273 ~~~  275 (291)
                      ...
T Consensus        79 ~~~   81 (140)
T 1lss_A           79 KEE   81 (140)
T ss_dssp             CHH
T ss_pred             Cch
Confidence            753

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.05  E-value=0.0048  Score=55.44  Aligned_cols=94  Identities=24%  Similarity=0.268  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC-------------CCchH-HHHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND-------------NNEPV-QQVIK  257 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~-------------~~~~~-~~~~~  257 (291)
                      -++++|.|.|.|.+|+.+++.++.+|+ +|++.+.+.++.++++++++..+ +.++             ....+ .+.+.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            478999999999999999999999999 89999988777667777776432 1110             00000 11122


Q ss_pred             HHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+   +.++|+++.+.+...+++.+.|..+|.+
T Consensus       251 ~l---k~~iVie~AN~p~t~~eA~~~L~~~gIl  280 (355)
T 1c1d_A          251 TL---DCSVVAGAANNVIADEAASDILHARGIL  280 (355)
T ss_dssp             HC---CCSEECCSCTTCBCSHHHHHHHHHTTCE
T ss_pred             hC---CCCEEEECCCCCCCCHHHHHHHHhCCEE
Confidence            21   5789999998865545677888877753

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.04  E-value=0.00051  Score=57.70  Aligned_cols=96  Identities=15%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHHHHh-
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~~~~-  260 (291)
                      ....++++||.+|+| .|..++.+++.....++++++.+++.++.+++.    |..   .++..+.  .+   .+.... 
T Consensus        50 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~---~~~~~~~  123 (233)
T 2gpy_A           50 LKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA--LQ---LGEKLEL  123 (233)
T ss_dssp             HHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG--GG---SHHHHTT
T ss_pred             HhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH--HH---HHHhccc
Confidence            344678899999988 688888999987333999999999988887653    442   1222211  11   122222 


Q ss_pred             cCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      .+.||+|+.....   ...++.+.+.|++||++
T Consensus       124 ~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~l  156 (233)
T 2gpy_A          124 YPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLI  156 (233)
T ss_dssp             SCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEE
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEE
Confidence            3479988876553   46678899999999976

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.03  E-value=0.0041  Score=50.80  Aligned_cols=98  Identities=10%  Similarity=0.040  Sum_probs=68.2

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce--EeCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~--~i~~~~~~~~~~~~~~~  258 (291)
                      +.....++++++||.+|+|. |..++.+++.....++++++.+++.++.+++.    +.+.  ++..+.  .+   .+..
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~---~~~~  105 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA--PE---GLDD  105 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT--TT---TCTT
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh--hh---hhhc
Confidence            34556788999999999984 88888888886444999999999988888652    4322  222211  11   0111


Q ss_pred             HhcCCccEEEEccC---ChHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIG---DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g---~~~~~~~~~~~l~~~G~i  290 (291)
                        .+.+|+|+....   ....++.+.+.|+++|++
T Consensus       106 --~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l  138 (204)
T 3e05_A          106 --LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVI  138 (204)
T ss_dssp             --SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEE
T ss_pred             --CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence              136999987654   246789999999999986

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.00  E-value=0.003  Score=53.97  Aligned_cols=78  Identities=9%  Similarity=0.102  Sum_probs=54.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCccEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      +++|||.|+ +++|+++++.+...|+ +|+.+++++++.+.+.+.+... .+  |..+ +++..+.+.+..  .|++|++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~g~iDiL   79 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVAD-PLTLKKFVEYAMEKLQRIDVL   79 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            378999987 8999999999999999 9999999998887776554433 22  3322 233333333322  2589999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        80 VNNAG~   85 (247)
T 3ged_A           80 VNNACR   85 (247)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            998874

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.98  E-value=0.0014  Score=55.64  Aligned_cols=98  Identities=17%  Similarity=0.140  Sum_probs=69.7

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc-----CCce--EeCCCCCCchHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF-----GVTE--FLNPNDNNEPVQQVI  256 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~-----g~~~--~i~~~~~~~~~~~~~  256 (291)
                      +.....+.++++||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.     |.+.  ++..+.  .+.    
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~--~~~----  160 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKL--EEA----  160 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCG--GGC----
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECch--hhc----
Confidence            45566788999999999984 888889998863 23999999999988888754     5322  222111  110    


Q ss_pred             HHHhcCCccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                       .+..+.+|+|+.....+ ..+..+.+.|+++|++
T Consensus       161 -~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l  194 (258)
T 2pwy_A          161 -ELEEAAYDGVALDLMEPWKVLEKAALALKPDRFL  194 (258)
T ss_dssp             -CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEE
T ss_pred             -CCCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEE
Confidence             01223799988776654 6789999999999975

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.97  E-value=0.0028  Score=55.65  Aligned_cols=94  Identities=13%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~  257 (291)
                      +.+...+.++++||.+|+|. |..+..+++..|+ +|++++.+++.++.+++.    |..   .++..+.  .+      
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~------  151 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW--ED------  151 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG--GG------
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh--HH------
Confidence            44556778999999999975 8888888888788 999999999998888763    321   1222111  11      


Q ss_pred             HHhcCCccEEEEc-----cCC---hHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFEC-----IGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~-----~g~---~~~~~~~~~~l~~~G~i  290 (291)
                       + ++.+|+|+..     ++.   ...++.+.+.|++||++
T Consensus       152 -~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  190 (318)
T 2fk8_A          152 -F-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRM  190 (318)
T ss_dssp             -C-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEE
T ss_pred             -C-CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEE
Confidence             1 2579999875     432   45788889999999986

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.95  E-value=0.0045  Score=51.76  Aligned_cols=98  Identities=12%  Similarity=0.138  Sum_probs=66.0

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHH----cCCc--eE-eCCCCCCchHHHHHH
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVT--EF-LNPNDNNEPVQQVIK  257 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~----~g~~--~~-i~~~~~~~~~~~~~~  257 (291)
                      ...+.+++.+||-+|+| .|..++.+|+.+  +. +|++++.+++..+.+++    .|..  .+ +..    .+..+.+.
T Consensus        50 ~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~----gda~~~l~  123 (221)
T 3dr5_A           50 ATTNGNGSTGAIAITPA-AGLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRVRFLL----SRPLDVMS  123 (221)
T ss_dssp             HHSCCTTCCEEEEESTT-HHHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC----SCHHHHGG
T ss_pred             HhhCCCCCCCEEEEcCC-chHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE----cCHHHHHH
Confidence            33444556699999987 688888999986  45 99999999998887764    3543  11 111    22333333


Q ss_pred             HHhcCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      .+..+.||+||-....   ...++.+++.|++||.|
T Consensus       124 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  159 (221)
T 3dr5_A          124 RLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGAL  159 (221)
T ss_dssp             GSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEE
T ss_pred             HhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEE
Confidence            3323589988754332   34688999999999976

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.93  E-value=0.00092  Score=61.54  Aligned_cols=84  Identities=23%  Similarity=0.313  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      -.+++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|....        ++    .++. ...|+|+.+.
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~~--------sL----~eal-~~ADVVilt~  274 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQVL--------LV----EDVV-EEAHIFVTTT  274 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC--------CH----HHHT-TTCSEEEECS
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCeec--------CH----HHHH-hhCCEEEECC
Confidence            478999999999999999999999999 99999998887777776665321        12    2221 2478888777


Q ss_pred             CChHHHH-HHHHhhccCcc
Q 022819          272 GDTGMIT-TALQSCCDVRS  289 (291)
Q Consensus       272 g~~~~~~-~~~~~l~~~G~  289 (291)
                      +....+. +.++.|+++..
T Consensus       275 gt~~iI~~e~l~~MK~gAI  293 (436)
T 3h9u_A          275 GNDDIITSEHFPRMRDDAI  293 (436)
T ss_dssp             SCSCSBCTTTGGGCCTTEE
T ss_pred             CCcCccCHHHHhhcCCCcE
Confidence            6544333 45556666543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.91  E-value=0.0085  Score=50.27  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhc--CCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITD--GGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~i~~~~~~~~~~~~~~~~~~--g~~d~vl  268 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++....++..+-.+.+   .+.++..  +++|+++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~~~id~vi   81 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWE---ATERALGSVGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHH---HHHHHHTTCCCCCEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHH---HHHHHHHHcCCCCEEE
Confidence            4688999987 9999999999999999 8999999888766543 3422233322221122   2333222  3789999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      ++.|.
T Consensus        82 ~~Ag~   86 (244)
T 3d3w_A           82 NNAAV   86 (244)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99884

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.90  E-value=0.0012  Score=56.35  Aligned_cols=78  Identities=15%  Similarity=0.256  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      -+|+++||.|+ +++|+++++.+...|+ +|+.+++++++++..+.-.+.. ..|..+ +++..+.++++  +++|++++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~--g~iDiLVN   84 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD-SQRLQRLFEAL--PRLDVLVN   84 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC-HHHHHHHHHHC--SCCSEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC-HHHHHHHHHhc--CCCCEEEE
Confidence            36999999987 8999999999999999 9999999887765432211111 233332 23333334332  58999999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        85 NAGi   88 (242)
T 4b79_A           85 NAGI   88 (242)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9885

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.89  E-value=0.0005  Score=57.90  Aligned_cols=96  Identities=17%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~  258 (291)
                      +.+...+.++++||.+|+| .|..+..+++..+. ++++++.+++..+.+++    .|...  ++..+     .   ...
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d-----~---~~~  152 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILGD-----G---SKG  152 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC-----G---GGC
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC-----c---ccC
Confidence            3455578899999999998 78888999998874 99999999998887765    34322  22111     1   011


Q ss_pred             HhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          259 ITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +... .+|+|+.+.........+.+.|+++|++
T Consensus       153 ~~~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~l  185 (235)
T 1jg1_A          153 FPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKL  185 (235)
T ss_dssp             CGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEE
T ss_pred             CCCCCCccEEEECCcHHHHHHHHHHhcCCCcEE
Confidence            1222 5999998766555667889999999976

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.89  E-value=0.0031  Score=54.69  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHh--cCCc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      -+|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+ +++|... .  .|..+ ..+..+.+.+..  .|++
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~i  104 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN-LAELDRLYEKVKAEAGRI  104 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCE
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCC
Confidence            36899999987 8999999999999999 999999999887654 5566543 2  23332 233333333322  2589


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++++.|.
T Consensus       105 DiLVNNAG~  113 (273)
T 4fgs_A          105 DVLFVNAGG  113 (273)
T ss_dssp             EEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999885

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.86  E-value=0.001  Score=56.60  Aligned_cols=98  Identities=14%  Similarity=0.182  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhcC-C
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITDG-G  263 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~~g-~  263 (291)
                      ...++.+||-+|+| .|..++.+++.++ ..+|++++.+++.++.+++.    |...-+....  .+..+.+..+... .
T Consensus        60 ~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~--~d~~~~l~~~~~~~~  136 (248)
T 3tfw_A           60 RLTQAKRILEIGTL-GGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE--GPALQSLESLGECPA  136 (248)
T ss_dssp             HHHTCSEEEEECCT-TSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHTCCSCCC
T ss_pred             hhcCCCEEEEecCC-chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHhcCCCCC
Confidence            44678899999987 4888888888874 34999999999988877653    5431111110  2333334433322 7


Q ss_pred             ccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          264 ADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      ||+||-....   ...++.+.+.|++||.|
T Consensus       137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  166 (248)
T 3tfw_A          137 FDLIFIDADKPNNPHYLRWALRYSRPGTLI  166 (248)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTCCTTCEE
T ss_pred             eEEEEECCchHHHHHHHHHHHHhcCCCeEE
Confidence            9988832222   35788899999999976

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.85  E-value=0.0052  Score=52.71  Aligned_cols=79  Identities=14%  Similarity=0.267  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceE---eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF---LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~---i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+    ++.|....   .|..+ +++..+.+++..  .|
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK-KKDVEEFVRRTFETYS   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            5789999987 8999999999999999 999999999876644    34455432   23332 233333333322  25


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        84 ~iDiLVNNAGi   94 (254)
T 4fn4_A           84 RIDVLCNNAGI   94 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            89999999873

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.84  E-value=0.0079  Score=51.33  Aligned_cols=79  Identities=15%  Similarity=0.296  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-Ch--HHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCC--ceE--eCCCCCCchHHHHHHHHhc
Q 022819          193 KGSTVVIFGL-GT--VGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGV--TEF--LNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~--~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~--~~~--i~~~~~~~~~~~~~~~~~~  261 (291)
                      +++++||.|+ |.  +|.++++.+...|+ +|+.++++++..+.+++    ++.  ...  .|..+ ..+..+.+.+...
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN-DAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS-SHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC-HHHHHHHHHHHHH
Confidence            5688999986 56  99999999999999 89999887755444433    332  122  23332 2334333433322


Q ss_pred             --CCccEEEEccCC
Q 022819          262 --GGADYSFECIGD  273 (291)
Q Consensus       262 --g~~d~vld~~g~  273 (291)
                        +.+|+++.+.|.
T Consensus        84 ~~g~id~li~~Ag~   97 (266)
T 3oig_A           84 QVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCeeEEEEcccc
Confidence              479999998874

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.84  E-value=0.0079  Score=50.92  Aligned_cols=79  Identities=25%  Similarity=0.362  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceE-e--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF-L--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~-i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+ ++++.... +  |..+ .++..+.+.+..  .+++|
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id   82 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISD-PGSVKALFAEIQALTGGID   82 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTC-HHHHHHHHHHHHHHHSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCCCC
Confidence            5789999987 8999999999999999 999999998876654 44554432 2  2222 122333333221  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        83 ~lv~nAg~   90 (247)
T 3rwb_A           83 ILVNNASI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.81  E-value=0.0037  Score=52.34  Aligned_cols=74  Identities=18%  Similarity=0.258  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++.+|||+|+ |.+|..++..+...|. +|+++++++++.+.+...++..++..+-.     +.+.+.. +++|+|+.+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-----~~~~~~~-~~~D~vi~~a   92 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANLE-----EDFSHAF-ASIDAVVFAA   92 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCTT-----SCCGGGG-TTCSEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEcccH-----HHHHHHH-cCCCEEEECC
Confidence            4678999987 9999999999999998 99999999998887777666233322211     2223322 3799999998


Q ss_pred             CC
Q 022819          272 GD  273 (291)
Q Consensus       272 g~  273 (291)
                      |.
T Consensus        93 g~   94 (236)
T 3e8x_A           93 GS   94 (236)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.79  E-value=0.0077  Score=50.90  Aligned_cols=79  Identities=22%  Similarity=0.260  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceE-eCCCCCCchHHHHHHHHh--cCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEF-LNPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~-i~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+. ++++..+ .|..+ .+++.+.+.+..  .+++|++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id~l   81 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD-PASVERGFAEALAHLGRLDGV   81 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC-HHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            4678999987 9999999999999999 9999999888766543 4453222 24332 123333333321  2479999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        82 vn~Ag~   87 (245)
T 1uls_A           82 VHYAGI   87 (245)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999884

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.78  E-value=0.00081  Score=55.32  Aligned_cols=96  Identities=11%  Similarity=0.026  Sum_probs=67.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~  258 (291)
                      +.+...++++++||.+|+| .|..+..+++. +. ++++++.+++..+.+++    .+...  ++..+.  ..   ..  
T Consensus        69 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~---~~--  138 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTG-SGYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG--WQ---GW--  138 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GG---CC--
T ss_pred             HHHhcCCCCCCEEEEEcCC-CCHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc--cc---CC--
Confidence            3456677899999999987 47788888887 66 99999999998888765    24332  222211  11   00  


Q ss_pred             HhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ...+.+|+|+.....+.....+.+.|++||++
T Consensus       139 ~~~~~~D~i~~~~~~~~~~~~~~~~L~pgG~l  170 (210)
T 3lbf_A          139 QARAPFDAIIVTAAPPEIPTALMTQLDEGGIL  170 (210)
T ss_dssp             GGGCCEEEEEESSBCSSCCTHHHHTEEEEEEE
T ss_pred             ccCCCccEEEEccchhhhhHHHHHhcccCcEE
Confidence            01247999998766545556788999999976

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.77  E-value=0.002  Score=53.60  Aligned_cols=99  Identities=13%  Similarity=0.129  Sum_probs=65.9

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhc--
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~~--  261 (291)
                      ....++++||-+|+| .|..++.+++.++ ..++++++.+++..+.+++.    |...-+....  .+..+.+.++..  
T Consensus        65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~--~d~~~~~~~~~~~~  141 (229)
T 2avd_A           65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL--KPALETLDELLAAG  141 (229)
T ss_dssp             HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHHHHHTT
T ss_pred             HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE--cCHHHHHHHHHhcC
Confidence            445678899999987 7888889998763 33999999999988877653    4321111110  223333333322  


Q ss_pred             --CCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          262 --GGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 --g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                        +.+|+|+-....   ...++.+.+.|++||.+
T Consensus       142 ~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~l  175 (229)
T 2avd_A          142 EAGTFDVAVVDADKENCSAYYERCLQLLRPGGIL  175 (229)
T ss_dssp             CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEE
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEE
Confidence              479987754333   35688999999999975

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.77  E-value=0.0069  Score=51.92  Aligned_cols=79  Identities=20%  Similarity=0.297  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceE-e--CCCCCCchHHHHHHHHhc--C
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF-L--NPNDNNEPVQQVIKRITD--G  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~-i--~~~~~~~~~~~~~~~~~~--g  262 (291)
                      +|+++||.|+ +++|++.++.+...|+ +|+.+++++++++.+    ++.|.... +  |..+ +++..+.+.+...  |
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTD-ELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHCC
Confidence            5789999987 8999999999999999 999999998876543    33454432 2  2222 2333333444322  4


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        86 ~iDiLVNNAG~   96 (255)
T 4g81_D           86 HVDILINNAGI   96 (255)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            89999999885

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.76  E-value=0.0091  Score=54.88  Aligned_cols=78  Identities=21%  Similarity=0.422  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i-~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ....|+|+|.|.+|..+++.++..|. .|++++.++++.+.+++.|...++ |..+  .   +.+++..-..+|+|+-++
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~GDat~--~---~~L~~agi~~A~~viv~~   76 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFYGDATR--M---DLLESAGAAKAEVLINAI   76 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEESCTTC--H---HHHHHTTTTTCSEEEECC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEEcCCCC--H---HHHHhcCCCccCEEEECC
Confidence            34679999999999999999999999 999999999999999998876544 2221  2   234444333799999999


Q ss_pred             CChHH
Q 022819          272 GDTGM  276 (291)
Q Consensus       272 g~~~~  276 (291)
                      +....
T Consensus        77 ~~~~~   81 (413)
T 3l9w_A           77 DDPQT   81 (413)
T ss_dssp             SSHHH
T ss_pred             CChHH
Confidence            97543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.75  E-value=0.0031  Score=54.99  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=68.2

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~  257 (291)
                      +.+...++++++||-+|+|. |..+..+++..|. +|++++.+++.++.+++.    |..   .++..+.  .       
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~-------  132 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW--E-------  132 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCG--G-------
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCH--H-------
Confidence            45666788999999999984 8888899998887 999999999988888653    432   1222211  1       


Q ss_pred             HHhcCCccEEEEccCC---------------hHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGD---------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~---------------~~~~~~~~~~l~~~G~i  290 (291)
                      ++ .+.+|+|+..-.-               ...+..+.+.|++||++
T Consensus       133 ~~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l  179 (302)
T 3hem_A          133 EF-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRM  179 (302)
T ss_dssp             GC-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEE
T ss_pred             Hc-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEE
Confidence            12 4589998864221               35688899999999986

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.74  E-value=0.00037  Score=59.04  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc----eEeCCCCCCchHHHHHHHHhcCCccEE
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT----EFLNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~----~~i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      .+|.+||-+|+| .|..+..+++..+. ++++++.+++-++.+++....    ..+..    .+....+..+..+.||.|
T Consensus        59 ~~G~rVLdiG~G-~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~----~~a~~~~~~~~~~~FD~i  132 (236)
T 3orh_A           59 SKGGRVLEVGFG-MAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK----GLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCT-TSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE----SCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEECCC-ccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEe----ehHHhhcccccccCCceE
Confidence            678999999987 57777888877666 899999999999988874321    11111    223333334444578876


Q ss_pred             -EEccCC----------hHHHHHHHHhhccCccc
Q 022819          268 -FECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       268 -ld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                       +|+...          ...++.+.++|+|||++
T Consensus       133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l  166 (236)
T 3orh_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             EEeeeecccchhhhcchhhhhhhhhheeCCCCEE
Confidence             554432          24567888999999986

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.73  E-value=0.0084  Score=50.88  Aligned_cols=80  Identities=23%  Similarity=0.272  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-c----C-CceE--eCCCCC-CchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F----G-VTEF--LNPNDN-NEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~----g-~~~~--i~~~~~-~~~~~~~~~~~~--  260 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+.+ +    + ....  .|.... ..+..+.+.+..  
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            5789999987 8999999999999999 99999999887665432 1    2 1122  333111 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++++.|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2479999999884

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.73  E-value=0.0023  Score=52.71  Aligned_cols=98  Identities=17%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHc----CCce--EeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----GVTE--FLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~----g~~~--~i~~~~~~~~~~~~~~  257 (291)
                      +.+...+.++++||.+|+| .|..+..+++..+. .++++++.+++.++.+++.    +...  ++..+. ...    +.
T Consensus        69 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~----~~  142 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDG-TLG----YE  142 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCG-GGC----CG
T ss_pred             HHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc-ccC----CC
Confidence            3455677899999999998 58888899988762 2999999999988887653    3322  222111 010    00


Q ss_pred             HHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        ..+.+|+|+.+.......+.+.+.|+++|++
T Consensus       143 --~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l  173 (215)
T 2yxe_A          143 --PLAPYDRIYTTAAGPKIPEPLIRQLKDGGKL  173 (215)
T ss_dssp             --GGCCEEEEEESSBBSSCCHHHHHTEEEEEEE
T ss_pred             --CCCCeeEEEECCchHHHHHHHHHHcCCCcEE
Confidence              1247999998766555567888999999976

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.70  E-value=0.0061  Score=51.24  Aligned_cols=78  Identities=14%  Similarity=0.268  Sum_probs=53.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-E--eCCCCCCchHHHHHHHHh--cCCccE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGADY  266 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~d~  266 (291)
                      ++++||.|+ |++|.+++..+...|+ +|+.+++++++++.+. +++... .  .|..+ .++..+.+.+..  .+.+|+
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id~   80 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH-HEDVDVAFAAAVEWGGLPEL   80 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS-HHHHHHHHHHHHHHHCSCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHhcCCCcE
Confidence            578999987 8999999999999999 9999999988876554 333222 2  23332 123333333322  247999


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++.+.|.
T Consensus        81 lvnnAg~   87 (235)
T 3l6e_A           81 VLHCAGT   87 (235)
T ss_dssp             EEEECCC
T ss_pred             EEECCCC
Confidence            9999885

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.69  E-value=0.0096  Score=50.68  Aligned_cols=79  Identities=23%  Similarity=0.351  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc-----CCc-eEe--CCCCCCchHHHHHHHHhcC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF-----GVT-EFL--NPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~-----g~~-~~i--~~~~~~~~~~~~~~~~~~g  262 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+.+++++++.+.+. ++     +.. ..+  |..+ .+++.+.+.+....
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE-PGDIDRLFEKARDL   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-HHHHHHHHHHHHHh
Confidence            4678999987 8999999999999999 8999999887665432 22     212 222  3332 23333344433322


Q ss_pred             -CccEEEEccCC
Q 022819          263 -GADYSFECIGD  273 (291)
Q Consensus       263 -~~d~vld~~g~  273 (291)
                       ++|+++.+.|.
T Consensus        84 ~gid~lv~~Ag~   95 (260)
T 2z1n_A           84 GGADILVYSTGG   95 (260)
T ss_dssp             TCCSEEEECCCC
T ss_pred             cCCCEEEECCCC
Confidence             49999999883

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.69  E-value=0.01  Score=50.60  Aligned_cols=79  Identities=15%  Similarity=0.212  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCc-eE--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVT-EF--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~-~~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+.+++++++.+.+. ++... ..  .|..+ ..++.+.+.+..  .+++|
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~g~iD   88 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK-RASVDAAMQKAIDALGGFD   88 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC-HHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC-HHHHHHHHHHHHHHcCCCC
Confidence            4688999987 8999999999999999 9999999888766553 33211 12  23332 123333333221  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        89 ~lv~~Ag~   96 (263)
T 3ak4_A           89 LLCANAGV   96 (263)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999873

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.68  E-value=0.0047  Score=50.05  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc----CC-c--eEeCCCCCCchHHHHHHHH
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF----GV-T--EFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~----g~-~--~~i~~~~~~~~~~~~~~~~  259 (291)
                      ...++++++||-+|+|. |..+..+++..+ ..++++++.+++.++.+++.    |. .  .++..+.  .++    ...
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~----~~~   89 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH--QNM----DKY   89 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG--GGG----GGT
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH--HHH----hhh
Confidence            34568899999999874 778888888864 23999999999988877653    33 1  1232221  111    112


Q ss_pred             hcCCccEEEEccCC---------------hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIGD---------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g~---------------~~~~~~~~~~l~~~G~i  290 (291)
                      ..+.+|+|+-..+-               ...+..+.+.|+++|++
T Consensus        90 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l  135 (197)
T 3eey_A           90 IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGII  135 (197)
T ss_dssp             CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEE
Confidence            23479988865532               25789999999999976

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.67  E-value=0.0068  Score=51.18  Aligned_cols=77  Identities=16%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe--CCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL--NPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i--~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+.++.-...+  |..+  .+..+.+.+. .+++|++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~~~id~lv~   80 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK--KKQIDQFANE-VERLDVLFN   80 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC--HHHHHHHHHH-CSCCSEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC--HHHHHHHHHH-hCCCCEEEE
Confidence            4678999987 8999999999999999 999999988776544433211222  3332  3322222221 247999999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        81 ~Ag~   84 (246)
T 2ag5_A           81 VAGF   84 (246)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9884

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.66  E-value=0.0084  Score=50.35  Aligned_cols=75  Identities=21%  Similarity=0.310  Sum_probs=51.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSFE  269 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vld  269 (291)
                      ++++||.|+ |++|.++++.+...|+ +|+.+++++++  ..++++... ..|..+  .+..+.+.+..  .+++|++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~g~id~lv~   76 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEK--DDPKGLVKRALEALGGLHVLVH   76 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTT--SCHHHHHHHHHHHHTSCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCch--HHHHHHHHHHHHHcCCCCEEEE
Confidence            578999987 9999999999999999 89999888776  344455322 224333  33333333322  247999999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        77 ~Ag~   80 (239)
T 2ekp_A           77 AAAV   80 (239)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8874

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.66  E-value=0.017  Score=48.29  Aligned_cols=76  Identities=13%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhc--CCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITD--GGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i~~~~~~~~~~~~~~~~~~--g~~d~vl  268 (291)
                      +++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+ +....++..+-.+.+   .++++..  +.+|+++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWD---ATEKALGGIGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHH---HHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCCCHH---HHHHHHHHcCCCCEEE
Confidence            4678999987 9999999999999999 89999998877655433 321223322211122   2333322  3689999


Q ss_pred             EccC
Q 022819          269 ECIG  272 (291)
Q Consensus       269 d~~g  272 (291)
                      .+.|
T Consensus        82 ~~Ag   85 (244)
T 1cyd_A           82 NNAA   85 (244)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            9988

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.66  E-value=0.0077  Score=51.90  Aligned_cols=94  Identities=13%  Similarity=0.164  Sum_probs=66.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~  257 (291)
                      +.+...+.++.+||-+|+|. |..+..+++..|. ++++++.+++.++.+++.    |..   .++..+.  .       
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~-------  124 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW--E-------  124 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG--G-------
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh--h-------
Confidence            34556678999999999874 7788888877798 999999999988888653    321   1222111  1       


Q ss_pred             HHhcCCccEEEEc-----cC---ChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFEC-----IG---DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~-----~g---~~~~~~~~~~~l~~~G~i  290 (291)
                      ++. +.+|+|+..     ++   ....++.+.+.|++||++
T Consensus       125 ~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  164 (287)
T 1kpg_A          125 QFD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM  164 (287)
T ss_dssp             GCC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred             hCC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEE
Confidence            111 579998864     22   245688999999999986

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.66  E-value=0.0067  Score=51.18  Aligned_cols=80  Identities=21%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-EeCCCCCCch-HHHHHHHHhcCCccE
Q 022819          191 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FLNPNDNNEP-VQQVIKRITDGGADY  266 (291)
Q Consensus       191 ~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i~~~~~~~~-~~~~~~~~~~g~~d~  266 (291)
                      ..+++++||.|+ |++|..++..+...|+ +|+.+++++++++.+. ++.... ++..+-.+.+ ..+.+.+.  +++|+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~   87 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT--SNLDI   87 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC--SCCSE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc--CCCCE
Confidence            457889999987 8999999999999999 9999999988876654 343322 2222211122 22222222  47999


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++.+.|.
T Consensus        88 li~~Ag~   94 (249)
T 3f9i_A           88 LVCNAGI   94 (249)
T ss_dssp             EEECCC-
T ss_pred             EEECCCC
Confidence            9999884

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.63  E-value=0.0097  Score=51.82  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=37.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      -++++++|+|+|++|.+++..+...|+++|+.+.++.++.+.+
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            4678999999999999999999999997899999998876643

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.63  E-value=0.0044  Score=51.53  Aligned_cols=97  Identities=12%  Similarity=0.074  Sum_probs=66.6

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcC-----CCeEEEEcCChhhHHHHHHc----C-----Cc--eEeCCCCCCchHH
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARG-----ASRIIGVDTNPEKCEKAKAF----G-----VT--EFLNPNDNNEPVQ  253 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g-----~~~vi~~~~~~~~~~~a~~~----g-----~~--~~i~~~~~~~~~~  253 (291)
                      .++++++||.+|+|. |..+..+++..+     ..+|++++.+++..+.+++.    +     ..  .++..+. ...+.
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI-YQVNE  154 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG-GGCCH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh-Hhccc
Confidence            578899999999975 888888998876     12899999999988877653    3     11  1222211 11110


Q ss_pred             HHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          254 QVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       254 ~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ...  ...+.||+|+.....+..++.+.+.|+++|++
T Consensus       155 ~~~--~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l  189 (227)
T 2pbf_A          155 EEK--KELGLFDAIHVGASASELPEILVDLLAENGKL  189 (227)
T ss_dssp             HHH--HHHCCEEEEEECSBBSSCCHHHHHHEEEEEEE
T ss_pred             ccC--ccCCCcCEEEECCchHHHHHHHHHhcCCCcEE
Confidence            000  11247999998777666778999999999986

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.63  E-value=0.0048  Score=52.82  Aligned_cols=79  Identities=14%  Similarity=0.157  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhH-HHHHHcCCceE-eCCCCCCchHHHHHHHHh--cCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC-EKAKAFGVTEF-LNPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~-~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++. +.+++.++..+ .|..+ ..+..+.+.+..  .+++|++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~l  103 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC-ETGIMAFIDLLKTQTSSLRAV  103 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS-HHHHHHHHHHHHHHCSCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC-HHHHHHHHHHHHHhcCCCCEE
Confidence            4678999987 8999999999999999 888888877653 34455554332 23332 233333333322  2479999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +.+.|.
T Consensus       104 v~nAg~  109 (260)
T 3gem_A          104 VHNASE  109 (260)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999884

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.63  E-value=0.0094  Score=50.59  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-c-----C-C-ceEe--CCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F-----G-V-TEFL--NPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~-----g-~-~~~i--~~~~~~~~~~~~~~~~~-  260 (291)
                      .++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+.+ +     + . ...+  |..+ .++..+.+.+.. 
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD-CTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC-HHHHHHHHHHHHH
Confidence            5688999987 8999999999999999 99999999887665432 1     2 1 1222  3332 123333333322 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .+++|+++++.|.
T Consensus        84 ~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           84 KYGAVDILVNAAAM   97 (250)
T ss_dssp             HHCCEEEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             2479999999885

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.61  E-value=0.016  Score=49.34  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=31.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +.+|+|+|+|++|..++..+...|..++..++.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            47899999999999999999999988899998876

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.59  E-value=0.011  Score=50.17  Aligned_cols=79  Identities=18%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHhc-CC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRITD-GG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~~-g~  263 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+  |..+ .++..+.+.+... ++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN-EDEVTAFLNAADAHAP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC-HHHHHHHHHHHHhhCC
Confidence            5688999987 8999999999999999 9999999888765442    234332 22  3332 1222222222211 68


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        84 id~lv~nAg~   93 (252)
T 3h7a_A           84 LEVTIFNVGA   93 (252)
T ss_dssp             EEEEEECCCC
T ss_pred             ceEEEECCCc
Confidence            9999999884

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.59  E-value=0.0098  Score=51.31  Aligned_cols=79  Identities=19%  Similarity=0.282  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+  |..+ .++..+.+.+..  .+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ-PDQVRGMLDQMTGELG  108 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            5689999987 8999999999999999 8999999887755442    233322 22  3332 133333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus       109 ~iD~lvnnAg~  119 (276)
T 3r1i_A          109 GIDIAVCNAGI  119 (276)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999885

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.57  E-value=0.013  Score=49.70  Aligned_cols=78  Identities=24%  Similarity=0.300  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe--CCCCCCchHHHHHHHHh--cCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL--NPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i--~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.++++.. ..+  |..+ .+++.+.+.+..  .+++|++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~-~~~~~~~~~~~~~~~g~iD~l   81 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLED-ERERVRFVEEAAYALGRVDVL   81 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            4688999987 9999999999999999 89999988777444445432 333  3332 123333333321  2479999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        82 v~~Ag~   87 (256)
T 2d1y_A           82 VNNAAI   87 (256)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.57  E-value=0.011  Score=50.24  Aligned_cols=79  Identities=29%  Similarity=0.448  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc----CCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF----GVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~----g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ |++|..+++.+...|+ +|+.+++++++.+.+. ++    +... .+  |..+ .+++.+.+.+..  .
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT-PEGVDAVVESVRSSF   83 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999999999 9999999887765432 22    4332 22  3332 123333333221  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        84 g~id~lv~~Ag~   95 (263)
T 3ai3_A           84 GGADILVNNAGT   95 (263)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.57  E-value=0.004  Score=52.74  Aligned_cols=97  Identities=12%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc----eEeCCCCCCchHHHHHHHHh
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT----EFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~----~~i~~~~~~~~~~~~~~~~~  260 (291)
                      +.+...+.++.+||-+|+| .|..+..+++..+. ++++++.+++.++.+++....    .++..+.  .+.     .+.
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~--~~~-----~~~  117 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDI--LTK-----EFP  117 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT--TTC-----CCC
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc--ccC-----CCC
Confidence            3455667889999999987 67888888887787 999999999999999876432    1222211  110     112


Q ss_pred             cCCccEEEEccC--------ChHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIG--------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g--------~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.+|+|+..-.        ....+..+.+.|++||++
T Consensus       118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l  155 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTL  155 (266)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEE
Confidence            247999887532        134578888999999975

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.57  E-value=0.003  Score=53.12  Aligned_cols=97  Identities=20%  Similarity=0.213  Sum_probs=65.5

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhc--
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~~--  261 (291)
                      ...++++||-+|+| .|..++.+++.+  +. ++++++.+++..+.+++.    |...-+....  .+..+.+.++..  
T Consensus        69 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~--~d~~~~l~~l~~~~  144 (232)
T 3cbg_A           69 SLTGAKQVLEIGVF-RGYSALAMALQLPPDG-QIIACDQDPNATAIAKKYWQKAGVAEKISLRL--GPALATLEQLTQGK  144 (232)
T ss_dssp             HHHTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE--SCHHHHHHHHHTSS
T ss_pred             HhcCCCEEEEecCC-CCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHHHhcC
Confidence            34567899999987 788889999887  45 999999999988877653    4422111111  233334444432  


Q ss_pred             --CCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          262 --GGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 --g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                        +.||+||-....   ...++.+++.|++||.|
T Consensus       145 ~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~l  178 (232)
T 3cbg_A          145 PLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLM  178 (232)
T ss_dssp             SCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEE
Confidence              579988843322   35688899999999976

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.57  E-value=0.016  Score=49.13  Aligned_cols=74  Identities=16%  Similarity=0.191  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      -+++++||+|+ |++|.++++.+...|+ +|+.++++++.   +++++....+ .+- .++....+.+..  ++|+++++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~-~D~-~~~~~~~~~~~~--~iD~lv~~   88 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVV-CDL-RKDLDLLFEKVK--EVDILVLN   88 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEE-CCT-TTCHHHHHHHSC--CCSEEEEC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---HHhhCCeEEE-eeH-HHHHHHHHHHhc--CCCEEEEC
Confidence            46789999987 9999999999999999 89999988744   3444532333 221 234444444332  79999999


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .|.
T Consensus        89 Ag~   91 (249)
T 1o5i_A           89 AGG   91 (249)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.56  E-value=0.004  Score=53.55  Aligned_cols=79  Identities=19%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      .++++||.|+ |++|.+++..+...|+ +|+.++++.++++.+....... ..|..+ ..++.+.+.+..  .+++|+++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~lv   92 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTD-KYTFDTAITRAEKIYGPADAIV   92 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTC-HHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCC-HHHHHHHHHHHHHHCCCCCEEE
Confidence            4688999987 8999999999999999 8999999887765432211111 223332 123333333322  24799999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      ++.|.
T Consensus        93 nnAg~   97 (266)
T 3p19_A           93 NNAGM   97 (266)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99884

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.56  E-value=0.013  Score=48.81  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-----HcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-----AFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.++++.++.+.+.     +.+... .+  |..+ .++..+.+.+..  .
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK-AESVEEFSKKVLERF   78 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHCC-HHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC-HHHHHHHHHHHHHhc
Confidence            3578999987 8999999999999999 8999999988765442     234333 22  3322 122222222211  1


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        79 g~id~li~~Ag~   90 (235)
T 3l77_A           79 GDVDVVVANAGL   90 (235)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999884

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.55  E-value=0.0087  Score=51.35  Aligned_cols=79  Identities=22%  Similarity=0.296  Sum_probs=54.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++... .+  |..+ ..+..+.+.+..  .+++|
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD  103 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSD-RKSIKQLAEVAEREMEGID  103 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS-HHHHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCC-HHHHHHHHHHHHHHcCCCC
Confidence            5688999987 8999999999999999 999999988876654 4555443 22  3322 123333333222  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus       104 ~lvnnAg~  111 (266)
T 3grp_A          104 ILVNNAGI  111 (266)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999885

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.55  E-value=0.015  Score=50.32  Aligned_cols=77  Identities=26%  Similarity=0.279  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-Ee--CCCCCCchHHHHHHHHhcCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FL--NPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i--~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. +++... .+  |..+ ..+..+.+.+.  +++|++
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~--~~iD~l   90 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQD-LSSVRRFADGV--SGADVL   90 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTC-HHHHHHHHHTC--CCEEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCC-HHHHHHHHHhc--CCCCEE
Confidence            5789999987 9999999999999999 9999999988877664 344322 22  3322 12233333332  478999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +.+.|.
T Consensus        91 v~nAg~   96 (291)
T 3rd5_A           91 INNAGI   96 (291)
T ss_dssp             EECCCC
T ss_pred             EECCcC
Confidence            999884

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.55  E-value=0.012  Score=50.17  Aligned_cols=79  Identities=14%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHH---Hhc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKR---ITD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~---~~~  261 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .  .|..+ .++..+.+.+   ...
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANHFH   85 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            4688999987 8999999999999999 8999999887765432    234332 2  23332 1223333322   222


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        86 g~id~lv~~Ag~   97 (260)
T 2ae2_A           86 GKLNILVNNAGI   97 (260)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            579999999883

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.55  E-value=0.0069  Score=53.10  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcCCc--eEeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVT--EFLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~~g~~--~~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      ++++++|+|+|++|.+++..+...|+.+|+++.++.++.+ ++++++..  .+++       + +.+.+.. ..+|+|++
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~-------~-~~~~~~~-~~aDivIn  210 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS-------L-AEAETRL-AEYDIIIN  210 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC-------H-HHHHHTG-GGCSEEEE
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee-------H-HHHHhhh-ccCCEEEE
Confidence            5789999999999999999999999878999999988864 44556542  1221       1 1222221 25889999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +++.
T Consensus       211 ~t~~  214 (297)
T 2egg_A          211 TTSV  214 (297)
T ss_dssp             CSCT
T ss_pred             CCCC
Confidence            8875

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.53  E-value=0.0079  Score=51.21  Aligned_cols=79  Identities=24%  Similarity=0.292  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-c---CCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F---GVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~---g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+.+ +   +... .+  |..+ .++..+.+.+..  .+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN-TDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            4688999987 8999999999999999 89999999887765542 2   3222 22  3332 123333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        83 ~id~lv~nAg~   93 (257)
T 3imf_A           83 RIDILINNAAG   93 (257)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999883

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.53  E-value=0.012  Score=49.97  Aligned_cols=79  Identities=19%  Similarity=0.277  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+. +++... .+  |..+ .++..+.+++..  .+.+|
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id   85 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK-EADVDAAVEAALSKFGKVD   85 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHhcCCCC
Confidence            4688999987 8999999999999999 8999999988876553 454333 22  3322 123333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        86 ~li~~Ag~   93 (261)
T 3n74_A           86 ILVNNAGI   93 (261)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999874

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.53  E-value=0.012  Score=50.17  Aligned_cols=79  Identities=18%  Similarity=0.286  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc--eE--eCCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT--EF--LNPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g--~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~--~~--i~~~~~~~~~~~~~~~~~-  260 (291)
                      +++++||.|+ |  ++|++.++.+...|+ +|+.+++++++++.+.+    ++..  ..  .|..+ +++..+.+.+.. 
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   82 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS-DEEVINGFEQIGK   82 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC-HHHHHHHHHHHHH
Confidence            5889999986 4  799999999999999 99999998877665533    3432  22  23332 233333333221 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .|++|+++++.|.
T Consensus        83 ~~G~iD~lvnnAg~   96 (256)
T 4fs3_A           83 DVGNIDGVYHSIAF   96 (256)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             HhCCCCEEEecccc
Confidence             2589999998874

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.52  E-value=0.013  Score=50.40  Aligned_cols=79  Identities=16%  Similarity=0.285  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHH---HHhc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIK---RITD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~---~~~~  261 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+    ++.+... .  .|..+ .++..+.+.   +..+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHVFD   97 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            4688999987 9999999999999999 899999988776543    2234332 2  23332 122222222   2222


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        98 g~id~lv~nAg~  109 (273)
T 1ae1_A           98 GKLNILVNNAGV  109 (273)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            689999999874

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.52  E-value=0.013  Score=50.25  Aligned_cols=79  Identities=22%  Similarity=0.410  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HH----cCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA----FGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~----~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++    .+... .+  |..+ ..++.+.+.+..  .
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKEKF   97 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            5688999987 8999999999999999 899999988765543 22    24432 22  3332 123333333221  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        98 g~iD~lvnnAg~  109 (267)
T 1vl8_A           98 GKLDTVVNAAGI  109 (267)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999874

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.51  E-value=0.016  Score=53.09  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             HhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-----------cCC--ce--EeCCC
Q 022819          182 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----------FGV--TE--FLNPN  246 (291)
Q Consensus       182 ~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-----------~g~--~~--~i~~~  246 (291)
                      +..+.+..+++++++||-+|+| .|..++++|+..++.++++++.+++-.+.+++           .|.  ..  ++.-+
T Consensus       162 i~~il~~l~l~~gd~VLDLGCG-tG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          162 VAQMIDEIKMTDDDLFVDLGSG-VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCT-TSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCC-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            3345677789999999999987 68888899988898679999999876555543           342  22  23222


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccC--C---hHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIG--D---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g--~---~~~~~~~~~~l~~~G~i  290 (291)
                      ..+..+...   +  ..+|+||-..-  .   ...+....+.|++||+|
T Consensus       241 ~~~lp~~d~---~--~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrI  284 (438)
T 3uwp_A          241 FLSEEWRER---I--ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRI  284 (438)
T ss_dssp             TTSHHHHHH---H--HTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEE
T ss_pred             ccCCccccc---c--CCccEEEEcccccCchHHHHHHHHHHcCCCCcEE
Confidence            211222111   1  25899884211  1   23466777889999986

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.50  E-value=0.0064  Score=51.56  Aligned_cols=79  Identities=28%  Similarity=0.429  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce---EeCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE---FLNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~---~i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+. +++...   ..|..+ .++..+.+.+..  .+++|
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD   85 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN-PESIEAVLKAITDEFGGVD   85 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHCCCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC-HHHHHHHHHHHHHHcCCCC
Confidence            5788999987 8999999999999999 9999999988766553 333221   234432 123333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        86 ~lv~nAg~   93 (248)
T 3op4_A           86 ILVNNAGI   93 (248)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.50  E-value=0.023  Score=48.01  Aligned_cols=79  Identities=23%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hhHH-HHHHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCE-KAKAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~~-~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+.+++++ ++.+ .+++.+... .+  |..+ .+++.+.+.+..  .+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   83 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGRC   83 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHcCCC
Confidence            4678999987 8999999999999999 899998887 5544 344555432 22  3332 123333333321  2479


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++++.|.
T Consensus        84 d~lv~nAg~   92 (249)
T 2ew8_A           84 DILVNNAGI   92 (249)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.50  E-value=0.012  Score=49.98  Aligned_cols=79  Identities=28%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++... .  .|..+ .+++.+.+++..  .+++|
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD   81 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            4678999987 8999999999999999 899999988876654 3444322 2  23332 133333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        82 ~lv~nAg~   89 (254)
T 1hdc_A           82 GLVNNAGI   89 (254)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.50  E-value=0.011  Score=50.83  Aligned_cols=79  Identities=10%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH---HcCCce-E--eCCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK---AFGVTE-F--LNPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~---~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++.+.++   +.+... .  .|..+ +.+..+.+.+..  .|+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~G~   83 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD-DAQCRDAVAQTIATFGR   83 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence            5789999987 8999999999999999 8999988776654443   334322 2  23332 233333333322  258


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++++.|.
T Consensus        84 iDiLVNnAGi   93 (258)
T 4gkb_A           84 LDGLVNNAGV   93 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.50  E-value=0.011  Score=50.49  Aligned_cols=79  Identities=22%  Similarity=0.362  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-----cCCce-E--eCCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGVTE-F--LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-----~g~~~-~--i~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+.+     .+... .  .|..+ .++..+.+.+..  .
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE-PDAPAELARRAAEAF   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-TTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence            5688999987 8999999999999999 89999998887654421     34332 2  24432 233333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        97 g~id~lv~nAg~  108 (266)
T 4egf_A           97 GGLDVLVNNAGI  108 (266)
T ss_dssp             TSCSEEEEECCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999874

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.49  E-value=0.013  Score=49.28  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCC--ceEe--CCCCCC-chHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGV--TEFL--NPNDNN-EPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~--~~~i--~~~~~~-~~~~~~~~~~~--  260 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+.+++++++.+.+.    +.+.  ..++  +.+..+ +++.+.+.+..  
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            5788999987 8999999999999999 8999999988766543    2332  1222  332111 23333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2479999999884

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.49  E-value=0.014  Score=49.29  Aligned_cols=79  Identities=24%  Similarity=0.293  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      .++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+  |..+ .++..+.+.+..  .+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD-RQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            4688999987 8999999999999999 8999999887765442    224332 22  3332 123333333221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        84 ~id~lv~nAg~   94 (247)
T 2jah_A           84 GLDILVNNAGI   94 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.48  E-value=0.013  Score=49.84  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=64.6

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh--
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~--  260 (291)
                      ....++++||-+|+| .|..++.+++.+  +. ++++++.+++..+.+++    .|...-+....  .+..+.+..+.  
T Consensus        75 ~~~~~~~~VLeiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~--gda~~~l~~l~~~  150 (247)
T 1sui_A           75 LKLINAKNTMEIGVY-TGYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE--GPALPVLDEMIKD  150 (247)
T ss_dssp             HHHTTCCEEEEECCG-GGHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHS
T ss_pred             HHhhCcCEEEEeCCC-cCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE--CCHHHHHHHHHhc
Confidence            334567899999886 577888888886  45 99999999998887765    35421111110  22233333331  


Q ss_pred             ---cCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 ---DGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ---~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                         .+.||+||-....   ...++.+.++|++||.|
T Consensus       151 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  186 (247)
T 1sui_A          151 EKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVI  186 (247)
T ss_dssp             GGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCE
T ss_pred             cCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEE
Confidence               3479988853322   46688999999999976

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.48  E-value=0.012  Score=51.52  Aligned_cols=80  Identities=24%  Similarity=0.296  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHh--c
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~--~  261 (291)
                      -+++++||.|+ |++|.+++..+...|+ +|+.+++++++.+.+.    +.+... .  .|..+ .++..+.+.+..  .
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH-LDEMVRLADEAFRLL  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhC
Confidence            36789999987 8999999999999999 8999999988766543    234332 2  23332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999884

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.45  E-value=0.0083  Score=53.02  Aligned_cols=88  Identities=15%  Similarity=0.169  Sum_probs=59.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHH--cCCCeEEEEcCChhh--HHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEE
Q 022819          195 STVVIFGLGTVGLSVAQGAKA--RGASRIIGVDTNPEK--CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE  269 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~--~g~~~vi~~~~~~~~--~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld  269 (291)
                      -+|.|+|+|.+|...+..+..  .+.+.+.+.++++++  .+.++++|.....      .++.+ +.+.+.+ .+|+||+
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~------~~~e~-ll~~~~~~~iDvV~~   77 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------AGVEG-LIKLPEFADIDFVFD   77 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------SHHHH-HHHSGGGGGEEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc------CCHHH-HHhccCCCCCcEEEE
Confidence            478999999999988888743  466445556666565  5677788864221      22222 3222223 7999999


Q ss_pred             ccCChHHHHHHHHhhcc--Ccc
Q 022819          270 CIGDTGMITTALQSCCD--VRS  289 (291)
Q Consensus       270 ~~g~~~~~~~~~~~l~~--~G~  289 (291)
                      +++.....+.+..+++.  |..
T Consensus        78 atp~~~h~~~a~~al~a~~Gk~   99 (312)
T 1nvm_B           78 ATSASAHVQNEALLRQAKPGIR   99 (312)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCE
T ss_pred             CCChHHHHHHHHHHHHhCCCCE
Confidence            99976677777777776  654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.45  E-value=0.014  Score=49.95  Aligned_cols=79  Identities=27%  Similarity=0.262  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc-----CCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF-----GVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~-----g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. ++     +... .+  |..+ .+++.+.+.+..  
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   89 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER   89 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            4688999987 8999999999999999 9999999887765432 22     3322 22  3332 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++++.|.
T Consensus        90 ~g~id~lv~nAg~  102 (267)
T 1iy8_A           90 FGRIDGFFNNAGI  102 (267)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2479999999873

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.45  E-value=0.012  Score=50.82  Aligned_cols=80  Identities=19%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc---CCce-EeCCCCCCc-hHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF---GVTE-FLNPNDNNE-PVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~---g~~~-~i~~~~~~~-~~~~~~~~~~--~g~  263 (291)
                      +++++||+|+ +++|.++++.+...|+ +|+.+++++++++.+. ++   +... .+..+-.+. +....+.+..  .++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999987 8999999999999999 8999999988766543 22   3322 222221112 2333333221  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++++.|.
T Consensus        86 iD~lvnnAg~   95 (280)
T 3tox_A           86 LDTAFNNAGA   95 (280)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.45  E-value=0.013  Score=50.33  Aligned_cols=79  Identities=18%  Similarity=0.299  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceEe--CCCCCCchHHHHHHHHh--cCCccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFL--NPNDNNEPVQQVIKRIT--DGGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~i--~~~~~~~~~~~~~~~~~--~g~~d~  266 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. ++.....+  |..+ .++..+.+.+..  .+++|+
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~   85 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRLDC   85 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            4688999987 8999999999999999 8999999888766543 34322233  3332 123333333221  247999


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++.+.|.
T Consensus        86 lv~nAg~   92 (270)
T 1yde_A           86 VVNNAGH   92 (270)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998874

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.42  E-value=0.015  Score=50.02  Aligned_cols=79  Identities=15%  Similarity=0.253  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+++++++++.+.+    ++.+... .+  |..+ .+++.+.+.+..  .+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYG   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            4678999987 9999999999999999 899999988775543    2234332 22  3332 123333333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        99 ~iD~lv~~Ag~  109 (277)
T 2rhc_B           99 PVDVLVNNAGR  109 (277)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.42  E-value=0.014  Score=49.68  Aligned_cols=89  Identities=21%  Similarity=0.327  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHhcCCcc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~-~~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      +.++++||-+|+|. |..++.+++ +|. ++++++.++...+.+++    .+.. .++.     .++.+.   +..+.+|
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~-----~d~~~~---~~~~~fD  186 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE-----GSLEAA---LPFGPFD  186 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE-----SCHHHH---GGGCCEE
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEE-----CChhhc---CcCCCCC
Confidence            57889999999875 767776666 587 99999999998887765    2432 1221     222221   2235899


Q ss_pred             EEEEccCC---hHHHHHHHHhhccCccc
Q 022819          266 YSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      +|+.+.-.   ...+..+.+.|+++|++
T Consensus       187 ~Vv~n~~~~~~~~~l~~~~~~LkpgG~l  214 (254)
T 2nxc_A          187 LLVANLYAELHAALAPRYREALVPGGRA  214 (254)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHHHcCCCCEE
Confidence            99875432   34677888899999975

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.42  E-value=0.013  Score=49.77  Aligned_cols=79  Identities=18%  Similarity=0.237  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+. +++... .+  |..+ ..+....+.+..  .+++|
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id   84 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD-LNEIAVLGAAAGQTLGAID   84 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence            5789999987 8999999999999999 9999999988876554 344332 22  3322 122332332221  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        85 ~lv~nAg~   92 (255)
T 4eso_A           85 LLHINAGV   92 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998874

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.41  E-value=0.011  Score=50.77  Aligned_cols=79  Identities=22%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      .++++||.|+ |++|.+++..+...|+ +|+.+++++++++.+.    +.+... .  .|..+ .++..+.+.+..  .+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD-RHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            4678999987 8999999999999999 8999999988766543    234333 2  23332 123333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        81 ~iD~lVnnAG~   91 (264)
T 3tfo_A           81 RIDVLVNNAGV   91 (264)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.41  E-value=0.015  Score=49.79  Aligned_cols=79  Identities=19%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-E--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+. +++... .  .|..+ .++..+.+.+..  .+.+|
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD   82 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH   82 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHHcCCCc
Confidence            4678999987 8999999999999999 9999999988766553 443222 2  23332 123333333321  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        83 ~lvnnAg~   90 (263)
T 2a4k_A           83 GVAHFAGV   90 (263)
T ss_dssp             EEEEGGGG
T ss_pred             EEEECCCC
Confidence            99999874

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.41  E-value=0.0027  Score=50.99  Aligned_cols=94  Identities=15%  Similarity=0.138  Sum_probs=62.3

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHHhc
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ...++++++||-+|+| .|..+..+++. +. +|+++|.+++.++.+++    .+...  ++. .+ ..+    +..+..
T Consensus        17 ~~~~~~~~~vLDiGcG-~G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~-~~~----l~~~~~   87 (185)
T 3mti_A           17 AEVLDDESIVVDATMG-NGNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELIL-DG-HEN----LDHYVR   87 (185)
T ss_dssp             HTTCCTTCEEEESCCT-TSHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SC-GGG----GGGTCC
T ss_pred             HHhCCCCCEEEEEcCC-CCHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-Cc-HHH----HHhhcc
Confidence            3456889999999987 37777788877 66 99999999998887764    24322  222 11 111    112233


Q ss_pred             CCccEEEEccCC---------------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIGD---------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g~---------------~~~~~~~~~~l~~~G~i  290 (291)
                      +.||+|+-..+.               ...++.+.+.|++||++
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  131 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRL  131 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEE
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEE
Confidence            479988765321               13457888999999976

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.41  E-value=0.016  Score=49.90  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc---CCce-Ee--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF---GVTE-FL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~---g~~~-~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.++++++..+.++++   +... .+  |..+  .+-.+.+.+..  .++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLAD--LEGAANVAEELAATRR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTC--HHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHhcCC
Confidence            5789999987 8999999999999999 899988765544444433   3322 22  3332  22222222211  158


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus       107 iD~lv~nAg~  116 (273)
T 3uf0_A          107 VDVLVNNAGI  116 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999874

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.39  E-value=0.015  Score=49.70  Aligned_cols=80  Identities=19%  Similarity=0.258  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      -+++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+  |..+ .++..+.+.+..  .
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD-DAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            36789999987 8999999999999999 8999999988765543    234333 22  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        87 g~id~lv~nAg~   98 (264)
T 3ucx_A           87 GRVDVVINNAFR   98 (264)
T ss_dssp             SCCSEEEECCCS
T ss_pred             CCCcEEEECCCC
Confidence            479999998865

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.39  E-value=0.015  Score=48.93  Aligned_cols=79  Identities=24%  Similarity=0.344  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      .++++||.|+ |++|..+++.+...|+ +|+.+++++++.+.+.    +.+... .  .|..+ .++..+.+.+..  .+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD-IESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence            4678999987 8999999999999999 9999999887765443    334333 2  23332 233333344432  23


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.39  E-value=0.012  Score=50.73  Aligned_cols=79  Identities=18%  Similarity=0.326  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHc---CCceEe--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---GVTEFL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~---g~~~~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+ +++   +-...+  |..+ .+++.+.+.+..  .++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~  105 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSS-EAGARRLAQALGELSAR  105 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS-HHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC-HHHHHHHHHHHHHhcCC
Confidence            4678999987 8999999999999999 999999988776543 333   211122  2222 122333333321  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++++.|.
T Consensus       106 iD~lvnnAg~  115 (276)
T 2b4q_A          106 LDILVNNAGT  115 (276)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.38  E-value=0.0064  Score=52.65  Aligned_cols=79  Identities=19%  Similarity=0.272  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc----CCc-eE--eCCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF----GVT-EF--LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~----g~~-~~--i~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. ++    +.. ..  .|..+ .++..+.+.+..  .
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  109 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD-PDQVAALFAAVRAEF  109 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            5788999987 8999999999999999 9999999988765443 22    211 22  24332 123333333321  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++++.|.
T Consensus       110 g~iD~lvnnAG~  121 (281)
T 4dry_A          110 ARLDLLVNNAGS  121 (281)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.38  E-value=0.01  Score=52.33  Aligned_cols=79  Identities=18%  Similarity=0.210  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCC--ce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGV--TE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~--~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      .++++||+|+ |++|..++..+...|+ +|+.++++.++.+.+.+    .+.  .. ++  |..+ ..++.+.+.+..  
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS-REGFKMAADEVEAR   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC-HHHHHHHHHHHHHh
Confidence            5689999987 8999999999999999 89999999887665432    232  22 22  3332 233333333332  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus        85 ~g~id~lv~nAg~   97 (319)
T 3ioy_A           85 FGPVSILCNNAGV   97 (319)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             CCCCCEEEECCCc
Confidence            2479999999883

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.38  E-value=0.015  Score=48.43  Aligned_cols=78  Identities=14%  Similarity=0.134  Sum_probs=52.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceEe--CCCCCCchHHHHHHHHh--cCCccEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFL--NPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~i--~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      ++++||+|+ |++|..++..+...|+ +|+++++++++.+.+. +++....+  |..+ .+++.+.+.+..  .+++|++
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l   82 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVRE-EGDWARAVAAMEEAFGELSAL   82 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            568999987 9999999999999999 8999999888766543 34322222  3332 123333333321  2479999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +.+.|.
T Consensus        83 i~~Ag~   88 (234)
T 2ehd_A           83 VNNAGV   88 (234)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999873

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.38  E-value=0.014  Score=49.60  Aligned_cols=79  Identities=25%  Similarity=0.353  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-HHHH-HHc----CCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CEKA-KAF----GVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-~~~a-~~~----g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++ .+.+ +++    +... .+  |..+ .+++.+.+.+..  
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC-HHHHHHHHHHHHHh
Confidence            4678999987 8999999999999999 89999888766 4433 222    4332 22  3322 122333333321  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++++.|.
T Consensus        81 ~g~iD~lv~~Ag~   93 (260)
T 1x1t_A           81 MGRIDILVNNAGI   93 (260)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2479999999874

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.38  E-value=0.013  Score=50.41  Aligned_cols=79  Identities=23%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce---EeCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE---FLNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~---~i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ +++|.+++..+...|+ +|+.+++++++.+.+.    +.+...   ..|..+ ..+..+.+.+..  .+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND-ATAVDALVESTLKEFG  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC-HHHHHHHHHHHHHHcC
Confidence            5688999987 8999999999999999 9999999887765442    233322   234332 123333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus       105 ~iD~lvnnAg~  115 (270)
T 3ftp_A          105 ALNVLVNNAGI  115 (270)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.37  E-value=0.012  Score=50.62  Aligned_cols=79  Identities=25%  Similarity=0.433  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCC---ce-Ee--CCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGV---TE-FL--NPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~---~~-~i--~~~~~~~~~~~~~~~~~-  260 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+    ++.+.   .. .+  |..+ .++..+.+.+.. 
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN-EDETARAVDAVTA   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC-HHHHHHHHHHHHH
Confidence            5789999987 8999999999999999 899999988776543    23333   11 22  3332 123333333322 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .+++|+++.+.|.
T Consensus        88 ~~g~id~lv~nAg~  101 (281)
T 3svt_A           88 WHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence             2479999999884

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.37  E-value=0.013  Score=49.17  Aligned_cols=79  Identities=20%  Similarity=0.327  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-----cCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-----~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+     .+... .+  |..+ .+++.+.+.+..  .
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS-EESINKAFEEIYNLV   83 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC-HHHHHHHHHHHHHhc
Confidence            4678999987 9999999999989999 99999998876654322     24332 22  3322 123333333321  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        84 ~~~d~vi~~Ag~   95 (248)
T 2pnf_A           84 DGIDILVNNAGI   95 (248)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.36  E-value=0.015  Score=49.83  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++... .  .|..+ ..+..+.+.+..  .+++|
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id   87 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN-EVSVRALIDFTIDTFGRLD   87 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC-HHHHHHHHHHHHHHcCCCC
Confidence            4789999987 8999999999999999 899999988876654 3454332 2  23332 123333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        88 ~lv~nAg~   95 (271)
T 3tzq_B           88 IVDNNAAH   95 (271)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998884

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.35  E-value=0.009  Score=48.89  Aligned_cols=91  Identities=14%  Similarity=0.068  Sum_probs=63.4

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhcCCccE
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~--~i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      ..+.++.+||-+|+|. |..+..+++. |. ++++++.+++.++.+++.+...  ++..+.  .++      ...+.+|+
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~--~~~------~~~~~~D~  110 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDL--FDW------TPDRQWDA  110 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCT--TSC------CCSSCEEE
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccc--ccC------CCCCceeE
Confidence            3467888999999873 6677777777 77 9999999999999998866322  222211  111      22348999


Q ss_pred             EEEccCC--------hHHHHHHHHhhccCccc
Q 022819          267 SFECIGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                      |+-...-        ...++.+.+.|+++|++
T Consensus       111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l  142 (218)
T 3ou2_A          111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVV  142 (218)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCeEE
Confidence            8864321        35688888999999976

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.34  E-value=0.021  Score=47.49  Aligned_cols=76  Identities=14%  Similarity=0.120  Sum_probs=50.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCce-E--eCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTE-F--LNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~-~--i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      +++||.|+ |++|.+++..+...|+ +|+.+++++++++.+.+ ++... .  .|..+  .+..+.+-+.....+|+++.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~d~lv~   78 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLAS--HQEVEQLFEQLDSIPSTVVH   78 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTC--HHHHHHHHHSCSSCCSEEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCC--HHHHHHHHHHHhhcCCEEEE
Confidence            46899987 8999999999999999 89999999988776643 43222 2  23332  33222222222234599999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        79 ~Ag~   82 (230)
T 3guy_A           79 SAGS   82 (230)
T ss_dssp             CCCC
T ss_pred             eCCc
Confidence            8884

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.33  E-value=0.018  Score=51.93  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcCCceE-------------eCCCCCCchH-HHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVTEF-------------LNPNDNNEPV-QQVI  256 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~~g~~~~-------------i~~~~~~~~~-~~~~  256 (291)
                      -++++|+|.|.|.+|..+++.+..+|+ +|++.+++.++++ +++++|+..+             +.... ..-+ .+.+
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a~-~~~I~~~~~  248 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCAL-GAVLNDFTI  248 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSC-SCCBSTTHH
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccch-HHHhCHHHH
Confidence            478999999999999999999999999 8999999888766 5555565321             11000 0000 0112


Q ss_pred             HHHhcCCccEEEEccCChHHHHHHHHhhccCcc
Q 022819          257 KRITDGGADYSFECIGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~  289 (291)
                      ..+   +.++|++..+.+....++.+.|...|.
T Consensus       249 ~~l---g~~iV~e~An~p~t~~ea~~~L~~~Gi  278 (364)
T 1leh_A          249 PQL---KAKVIAGSADNQLKDPRHGKYLHELGI  278 (364)
T ss_dssp             HHC---CCSEECCSCSCCBSSHHHHHHHHHHTC
T ss_pred             HhC---CCcEEEeCCCCCcccHHHHHHHHhCCC
Confidence            222   567888887775444456666666554

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.33  E-value=0.019  Score=48.47  Aligned_cols=79  Identities=23%  Similarity=0.391  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ |++|..++..+...|+ +|+++++++++.+.+    ++.+... .+  |..+ ..++.+.+++..  .+
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   89 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN-TESVQNAVRSVHEQEG   89 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence            4688999987 9999999999999999 999999988765433    2234322 22  3322 123333333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        90 ~id~vi~~Ag~  100 (260)
T 3awd_A           90 RVDILVACAGI  100 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998873

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.33  E-value=0.023  Score=48.24  Aligned_cols=79  Identities=19%  Similarity=0.301  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.++++.++.+.+ ++++... .+  |..+ .++..+.+.+..  .+++|
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id   84 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR-QDSIDAAIAATVEHAGGLD   84 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHSSSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC-HHHHHHHHHHHHHHcCCCC
Confidence            5789999987 8999999999999999 899999988876654 3454332 22  3332 123333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        85 ~lv~~Ag~   92 (259)
T 4e6p_A           85 ILVNNAAL   92 (259)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999884

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.33  E-value=0.016  Score=49.39  Aligned_cols=79  Identities=19%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcC-Cc-eEe--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFG-VT-EFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g-~~-~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      .++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+.    +.+ .. ..+  |..+ ..+..+.+.+..  .
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD-RAQCDALAGRAVEEF   86 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence            5688999987 8999999999999999 9999999988765442    233 12 222  3322 123333333221  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        87 g~id~lvnnAg~   98 (262)
T 3pk0_A           87 GGIDVVCANAGV   98 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.33  E-value=0.02  Score=46.87  Aligned_cols=82  Identities=15%  Similarity=0.232  Sum_probs=55.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+...+ .|..+  .+.    ..+  .++|+||.+.|.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d--~~~----~~~--~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFD--LTL----SDL--SDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGG--CCH----HHH--TTCSEEEECCCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccC--hhh----hhh--cCCCEEEECCcC
Confidence            5899987 9999999999999998 9999999988766553 233322 23322  222    222  368999999986


Q ss_pred             h--------HHHHHHHHhhccC
Q 022819          274 T--------GMITTALQSCCDV  287 (291)
Q Consensus       274 ~--------~~~~~~~~~l~~~  287 (291)
                      .        .....+++.++..
T Consensus        72 ~~~~~~~~~~~~~~l~~a~~~~   93 (221)
T 3ew7_A           72 SPDEAEKHVTSLDHLISVLNGT   93 (221)
T ss_dssp             STTTTTSHHHHHHHHHHHHCSC
T ss_pred             CccccchHHHHHHHHHHHHHhc
Confidence            3        2334556666554

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.33  E-value=0.01  Score=51.12  Aligned_cols=79  Identities=22%  Similarity=0.254  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H---cCC---ce-Ee--CCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---FGV---TE-FL--NPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~---~g~---~~-~i--~~~~~~~~~~~~~~~~~-  260 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. +   .+.   .. .+  |..+ .++..+.+.+.. 
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   82 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK   82 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC-HHHHHHHHHHHHH
Confidence            4678999987 8999999999999999 9999999887765442 2   232   22 22  3332 122333333321 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .+++|+++++.|.
T Consensus        83 ~~g~iD~lv~nAg~   96 (280)
T 1xkq_A           83 QFGKIDVLVNNAGA   96 (280)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             hcCCCCEEEECCCC
Confidence             2479999999874

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.32  E-value=0.017  Score=49.46  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      .++++||+|+ |++|..++..+...|+ +|+++++++++.+.+    ++.+... ++  |..+ .+++.+.+.+..  .+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAEIG  107 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC-HHHHHHHHHHHHHHCC
Confidence            4688999987 9999999999999999 899999988766543    2234332 22  3322 123333333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus       108 ~iD~li~~Ag~  118 (272)
T 1yb1_A          108 DVSILVNNAGV  118 (272)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEECCCc
Confidence            79999999874

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.32  E-value=0.0046  Score=52.28  Aligned_cols=99  Identities=14%  Similarity=0.123  Sum_probs=66.2

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCCc----eEeCCCCCCchHHHHHHHHhc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVT----EFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g~~----~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      +...+++|++||=+|+| .|..+..+|+..|. .+|++++.+++.++.+++.-..    ..+..+.....   .. ....
T Consensus        71 ~~l~ikpG~~VldlG~G-~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~---~~-~~~~  145 (233)
T 4df3_A           71 IELPVKEGDRILYLGIA-SGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPE---KY-RHLV  145 (233)
T ss_dssp             SCCCCCTTCEEEEETCT-TSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGG---GG-TTTC
T ss_pred             hhcCCCCCCEEEEecCc-CCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcc---cc-cccc
Confidence            45678999999999986 58888889998764 3899999999988877653211    11212111111   00 1112


Q ss_pred             CCccEEEEccCCh----HHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIGDT----GMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g~~----~~~~~~~~~l~~~G~i  290 (291)
                      ..+|+||..+..+    ..+..+...|++||++
T Consensus       146 ~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~l  178 (233)
T 4df3_A          146 EGVDGLYADVAQPEQAAIVVRNARFFLRDGGYM  178 (233)
T ss_dssp             CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEE
T ss_pred             ceEEEEEEeccCChhHHHHHHHHHHhccCCCEE
Confidence            3789888766553    3577778899999985

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.32  E-value=0.016  Score=50.15  Aligned_cols=81  Identities=17%  Similarity=0.199  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HH---cCC-ce-E--eCCCCCCchHHHHHHHHh--
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA---FGV-TE-F--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~---~g~-~~-~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      ..++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++   .+. .. .  .|..+........+....  
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            35788999987 8999999999999999 999999998775543 22   222 11 2  244331022222222221  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus        89 ~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 FGKLDILVNNAGV  101 (311)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2479999999985

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.32  E-value=0.023  Score=47.87  Aligned_cols=79  Identities=24%  Similarity=0.328  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+.+    .+... .+  |..+ .++..+.+.+..  .+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD-PESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            5789999987 8999999999999999 89999999887665432    24322 22  3322 123333333221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999875

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.31  E-value=0.018  Score=49.08  Aligned_cols=79  Identities=28%  Similarity=0.413  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H---cCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---FGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~---~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. +   .+... .+  |..+ .++....+.+..  .+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence            4688999987 8999999999999999 8999999887765432 2   24332 22  3332 123333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.31  E-value=0.014  Score=49.02  Aligned_cols=79  Identities=22%  Similarity=0.322  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC---CceEe--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG---VTEFL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g---~~~~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ +++.   -..++  |..+ .+++.+.+.+..  .+.
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   82 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence            4678999987 9999999999999999 899999988766544 3332   11222  3322 123333333321  147


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        83 id~li~~Ag~   92 (251)
T 1zk4_A           83 VSTLVNNAGI   92 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.30  E-value=0.0026  Score=56.22  Aligned_cols=98  Identities=20%  Similarity=0.243  Sum_probs=66.7

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHc----CCce--EeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----GVTE--FLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~----g~~~--~i~~~~~~~~~~~~~~  257 (291)
                      +.+...++++++||.+|+|. |..+..+++..+. .+|++++.+++.++.+++.    |...  ++..+.  .+   ...
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~--~~---~~~  140 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG--YY---GVP  140 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GG---CCG
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh--hh---ccc
Confidence            34556788999999999875 7788888887541 3799999999988887653    4332  222111  11   000


Q ss_pred             HHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        ..+.+|+|+...........+.+.|+++|++
T Consensus       141 --~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~l  171 (317)
T 1dl5_A          141 --EFSPYDVIFVTVGVDEVPETWFTQLKEGGRV  171 (317)
T ss_dssp             --GGCCEEEEEECSBBSCCCHHHHHHEEEEEEE
T ss_pred             --cCCCeEEEEEcCCHHHHHHHHHHhcCCCcEE
Confidence              1247999998765544557788999999976

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.30  E-value=0.021  Score=48.44  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--cCC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      ++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+  |..+ .+++.+.+.+..  .++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence            468999987 8999999999999999 8999999887655432    224322 22  3332 123333333321  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++++.|.
T Consensus        80 id~lv~nAg~   89 (256)
T 1geg_A           80 FDVIVNNAGV   89 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.29  E-value=0.014  Score=50.41  Aligned_cols=79  Identities=19%  Similarity=0.358  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++... .+  |..+ .++..+.+.+..  .+++|
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD  105 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD-EQQIIAMVDACVAAFGGVD  105 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC-HHHHHHHHHHHHHHHSSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            5688999987 8999999999999999 999999998876654 3454322 22  3332 123333333321  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus       106 ~lvnnAg~  113 (277)
T 3gvc_A          106 KLVANAGV  113 (277)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999885

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.29  E-value=0.027  Score=47.62  Aligned_cols=80  Identities=19%  Similarity=0.246  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-EeCCCCCC-chHHHHHHHHh--cCCccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FLNPNDNN-EPVQQVIKRIT--DGGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i~~~~~~-~~~~~~~~~~~--~g~~d~  266 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+.+++++++.+.+ ++++... .+..+-.+ +++.+.+.+..  .+.+|+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   83 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4678999987 8999999999999999 899999988776644 3444332 22222111 23333333321  247899


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++++.|.
T Consensus        84 lv~~Ag~   90 (253)
T 1hxh_A           84 LVNNAGI   90 (253)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.29  E-value=0.018  Score=49.16  Aligned_cols=79  Identities=22%  Similarity=0.376  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC---ceEe--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV---TEFL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~---~~~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++.   ..++  |..+ ..++.+.+.+..  .++
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   92 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHGK   92 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999999999999 899998887765443 33432   1222  3322 123333333221  247


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        93 id~li~~Ag~  102 (278)
T 2bgk_A           93 LDIMFGNVGV  102 (278)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999998874

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.28  E-value=0.025  Score=48.75  Aligned_cols=79  Identities=15%  Similarity=0.228  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++... .  .|..+ ..+..+.+.+..  .+++|
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD  103 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS-AKDAESMVEKTTAKWGRVD  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            4688999987 8999999999999999 999999998876654 3455433 2  23332 123333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus       104 ~lv~nAg~  111 (277)
T 4dqx_A          104 VLVNNAGF  111 (277)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999884

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.28  E-value=0.038  Score=47.79  Aligned_cols=44  Identities=27%  Similarity=0.450  Sum_probs=39.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   45 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGA   45 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            478899999999999999999998 99999999999888877665

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.28  E-value=0.015  Score=49.24  Aligned_cols=79  Identities=27%  Similarity=0.347  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+ ++++... ++  |..+ .+++.+.+.+..  .+++|
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id   88 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS-EKDVQTALALAKGKFGRVD   88 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCCCC
Confidence            4688999987 9999999999999999 899998887765543 4444332 22  3322 123333333221  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        89 ~li~~Ag~   96 (265)
T 2o23_A           89 VAVNCAGI   96 (265)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99998874

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.28  E-value=0.022  Score=48.95  Aligned_cols=79  Identities=19%  Similarity=0.340  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCC--c-eEe--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGV--T-EFL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~--~-~~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      +++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.    +.+.  . .++  |..+ ..++.+.+.+..  
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRSQ  108 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC-HHHHHHHHHHHHHh
Confidence            4688999987 9999999999999999 8999999887665432    2332  1 122  3332 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus       109 ~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          109 HSGVDICINNAGL  121 (279)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            2479999999883

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.28  E-value=0.0059  Score=50.54  Aligned_cols=94  Identities=15%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHH----cCCce---EeCCCCCCchHHHHHHHHh
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVTE---FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~----~g~~~---~i~~~~~~~~~~~~~~~~~  260 (291)
                      ...++.+||-+|+| .|..++.+++..  +. ++++++.+++..+.+++    .|...   ++.     .+..+.+..+.
T Consensus        55 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~  127 (223)
T 3duw_A           55 QIQGARNILEIGTL-GGYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRT-----GLALDSLQQIE  127 (223)
T ss_dssp             HHHTCSEEEEECCT-TSHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-----SCHHHHHHHHH
T ss_pred             HhhCCCEEEEecCC-ccHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-----cCHHHHHHHHH
Confidence            44678899999987 577888888877  45 99999999998887764    34422   222     22333333332


Q ss_pred             c---CCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 D---GGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~---g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      .   +.||+||-....   +..++.+.+.|++||.|
T Consensus       128 ~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~l  163 (223)
T 3duw_A          128 NEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVI  163 (223)
T ss_dssp             HTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEE
T ss_pred             hcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEE
Confidence            1   469988843322   45688889999999975

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.27  E-value=0.019  Score=48.90  Aligned_cols=79  Identities=16%  Similarity=0.208  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCc-eE--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-EF--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~-~~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+ +++... ..  .|..+ .+++.+.+.+..  .+++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD   83 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGLH   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            4688999987 8999999999999999 899999988776554 333321 12  23332 123333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        84 ~lv~~Ag~   91 (260)
T 1nff_A           84 VLVNNAGI   91 (260)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.26  E-value=0.029  Score=47.63  Aligned_cols=78  Identities=14%  Similarity=0.200  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H---cCCce-Ee--CCCCCCchHHHHHHHH---hc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---FGVTE-FL--NPNDNNEPVQQVIKRI---TD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~---~g~~~-~i--~~~~~~~~~~~~~~~~---~~  261 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. +   .+... .+  |..+ ..+....+.+.   ..
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ-ESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence            4678999987 8999999999999999 9999999887765432 2   24322 22  3332 12333333333   14


Q ss_pred             CCccEEEEccC
Q 022819          262 GGADYSFECIG  272 (291)
Q Consensus       262 g~~d~vld~~g  272 (291)
                      +.+|+++++.|
T Consensus        82 g~id~lvnnAg   92 (260)
T 2qq5_A           82 GRLDVLVNNAY   92 (260)
T ss_dssp             TCCCEEEECCC
T ss_pred             CCceEEEECCc
Confidence            58999999984

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.26  E-value=0.017  Score=49.73  Aligned_cols=79  Identities=20%  Similarity=0.286  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ +++|.+++..+...|+ +|+.+++++++.+.+.    +.+... .  .|..+ .++..+.+.+..  .+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS-TDEVHAAVAAAVERFG  100 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            5789999987 8999999999999999 8999999988765442    234333 2  23332 123333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999999884

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.25  E-value=0.0096  Score=50.21  Aligned_cols=96  Identities=20%  Similarity=0.220  Sum_probs=66.2

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~---~~i~~~~~~~~~~~~~~  257 (291)
                      +.....+.++.+||-+|+|. |..+..+++..+. ++++++.+++.++.+++    .|..   .++..+.  .++.    
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~~----   99 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA--AGYV----   99 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC--TTCC----
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh--HhCC----
Confidence            34556678999999999874 7788888888888 99999999988887754    3432   1222221  1110    


Q ss_pred             HHhcCCccEEEEc-----c-CChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFEC-----I-GDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~-----~-g~~~~~~~~~~~l~~~G~i  290 (291)
                       . .+.||+|+-.     . .....++.+.+.|++||++
T Consensus       100 -~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l  136 (256)
T 1nkv_A          100 -A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIM  136 (256)
T ss_dssp             -C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEE
T ss_pred             -c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEE
Confidence             1 2479998852     1 2345688889999999975

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.25  E-value=0.016  Score=49.29  Aligned_cols=79  Identities=16%  Similarity=0.199  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHH---Hhc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKR---ITD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~---~~~  261 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+... .+  |..+ ..++.+.+.+   ...
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   90 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSMFG   90 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            4678999987 9999999999999999 999999988765543    2234332 22  3322 1222222222   222


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        91 ~~id~li~~Ag~  102 (266)
T 1xq1_A           91 GKLDILINNLGA  102 (266)
T ss_dssp             TCCSEEEEECCC
T ss_pred             CCCcEEEECCCC
Confidence            579999999884

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.25  E-value=0.011  Score=49.80  Aligned_cols=98  Identities=14%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh----
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT----  260 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~----  260 (291)
                      ...++++||-+|+| .|..++.+++.+. ..++++++.+++..+.+++    .|...-+....  .+..+.+..+.    
T Consensus        67 ~~~~~~~VLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~--gda~~~l~~l~~~~~  143 (237)
T 3c3y_A           67 KLVNAKKTIEVGVF-TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE--SDAMLALDNLLQGQE  143 (237)
T ss_dssp             HHTTCCEEEEECCT-TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHSTT
T ss_pred             HhhCCCEEEEeCCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHHHhccC
Confidence            34577899999886 5777888888863 2399999999998887764    35432111110  22333333332    


Q ss_pred             -cCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 -DGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 -~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                       .+.||+||-....   ...++.+.+.|++||.|
T Consensus       144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~l  177 (237)
T 3c3y_A          144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIV  177 (237)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             CCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEE
Confidence             3479988854322   45688899999999975

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.24  E-value=0.0057  Score=50.97  Aligned_cols=92  Identities=14%  Similarity=0.152  Sum_probs=64.7

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCC------CeEEEEcCChhhHHHHHHc----C-------CceEeCCCCCCchH
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGA------SRIIGVDTNPEKCEKAKAF----G-------VTEFLNPNDNNEPV  252 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~------~~vi~~~~~~~~~~~a~~~----g-------~~~~i~~~~~~~~~  252 (291)
                      .++++++||.+|+|. |..+..+++..+.      .+|++++.+++..+.+++.    +       -..++..+.  .+ 
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~-  156 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG--RK-  156 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG--GG-
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc--cc-
Confidence            578899999999875 8888888887652      3899999999988877642    1       111222211  11 


Q ss_pred             HHHHHHHhc-CCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          253 QQVIKRITD-GGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       253 ~~~~~~~~~-g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                           .+.. +.+|+|+.........+.+.+.|+++|++
T Consensus       157 -----~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l  190 (227)
T 1r18_A          157 -----GYPPNAPYNAIHVGAAAPDTPTELINQLASGGRL  190 (227)
T ss_dssp             -----CCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEE
T ss_pred             -----CCCcCCCccEEEECCchHHHHHHHHHHhcCCCEE
Confidence                 1112 47999998777666678899999999986

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.24  E-value=0.014  Score=52.19  Aligned_cols=79  Identities=23%  Similarity=0.332  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-----------HHHHHHcCCce-E--eCCCCCCchHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-----------CEKAKAFGVTE-F--LNPNDNNEPVQQVIK  257 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-----------~~~a~~~g~~~-~--i~~~~~~~~~~~~~~  257 (291)
                      +++++||.|+ +++|.+++..+...|+ +|+.+++++++           .+.+++.|... .  .|..+ .+++.+.+.
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~  121 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD-EQQISAAVE  121 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHH
Confidence            5789999987 8999999999999999 89999887663           22334445433 2  24432 233333333


Q ss_pred             HHh--cCCccEEEEccCC
Q 022819          258 RIT--DGGADYSFECIGD  273 (291)
Q Consensus       258 ~~~--~g~~d~vld~~g~  273 (291)
                      +..  .+++|+++++.|.
T Consensus       122 ~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            322  2489999999884

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.24  E-value=0.028  Score=48.58  Aligned_cols=79  Identities=16%  Similarity=0.240  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc---CCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF---GVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~---g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.++++.++.+.+. ++   +... .+  |..+ ..+..+.+.+..  .+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD-ELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            5688999987 8999999999999999 9999999988766543 22   3222 22  3332 123333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus       105 ~iD~lVnnAg~  115 (283)
T 3v8b_A          105 HLDIVVANAGI  115 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.24  E-value=0.02  Score=48.85  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-----cCCc-e-E--eCCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGVT-E-F--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-----~g~~-~-~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+.+     .+.. . .  .|..+ ..+..+.+.+..  
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD-ALQVRAFAEACERT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC-HHHHHHHHHHHHHH
Confidence            4688999987 8999999999999999 89999999887654422     3322 2 2  23332 123333333321  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++++.|.
T Consensus        85 ~g~id~lvnnAg~   97 (265)
T 3lf2_A           85 LGCASILVNNAGQ   97 (265)
T ss_dssp             HCSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2479999999884

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.24  E-value=0.024  Score=48.84  Aligned_cols=79  Identities=20%  Similarity=0.233  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      .++++||.|+ +++|.+++..+...|+ +|+.+++++++.+.+. +++... .+  |..+ ..+..+.+.+..  .+++|
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD   81 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS-LQDQKRAAERCLAAFGKID   81 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcCCCC
Confidence            4688999987 8999999999999999 9999999988876554 344333 22  3322 123333333321  24899


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        82 ~lvnnAg~   89 (281)
T 3zv4_A           82 TLIPNAGI   89 (281)
T ss_dssp             EEECCCCC
T ss_pred             EEEECCCc
Confidence            99999884

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.23  E-value=0.018  Score=49.57  Aligned_cols=79  Identities=20%  Similarity=0.334  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceE-e--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF-L--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~-i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+    ++.+.... +  |..+ .++..+.+.+..  .+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS-ESEIIEAFARLDEQGI  102 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHCC
Confidence            5688999987 8999999999999999 999999988776544    23344332 2  2222 123333333322  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus       103 ~iD~lv~nAg~  113 (271)
T 4ibo_A          103 DVDILVNNAGI  113 (271)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.23  E-value=0.017  Score=50.42  Aligned_cols=79  Identities=15%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc---CC-c-eEe--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF---GV-T-EFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~---g~-~-~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. ++   +. . ..+  |..+ .++..+.+.+..  .
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  117 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD-PGSCADAARTVVDAF  117 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC-HHHHHHHHHHHHHHc
Confidence            5788999987 8999999999999999 9999999887765442 32   31 1 122  3332 122333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus       118 g~iD~lvnnAg~  129 (293)
T 3rih_A          118 GALDVVCANAGI  129 (293)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.23  E-value=0.058  Score=41.85  Aligned_cols=76  Identities=7%  Similarity=0.098  Sum_probs=51.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC-hhhHHHHHH---cCCceEeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN-PEKCEKAKA---FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~-~~~~~~a~~---~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      .++++|+|+|.+|...++.+...|. .|++++++ +++.+.+++   .|...+. -+.  . -.+.+.+..-.++|.|+-
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~~i~-gd~--~-~~~~l~~a~i~~ad~vi~   77 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIP-GDS--N-DSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEE-SCT--T-SHHHHHHHTTTTCSEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCeEEE-cCC--C-CHHHHHHcChhhCCEEEE
Confidence            4678899999999999999999998 89999886 465554432   2443322 221  1 122344442347899999


Q ss_pred             ccCCh
Q 022819          270 CIGDT  274 (291)
Q Consensus       270 ~~g~~  274 (291)
                      +++..
T Consensus        78 ~~~~d   82 (153)
T 1id1_A           78 LSDND   82 (153)
T ss_dssp             CSSCH
T ss_pred             ecCCh
Confidence            99874

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.23  E-value=0.009  Score=50.70  Aligned_cols=75  Identities=15%  Similarity=0.050  Sum_probs=50.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH---cCCceEeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA---FGVTEFLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~---~g~~~~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      +++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+.+   .+...... +.  .+..+.+.+..  .+++|+++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~-d~--~~v~~~~~~~~~~~g~iD~lv   77 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPM-SE--QEPAELIEAVTSAYGQVDVLV   77 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEEC-CC--CSHHHHHHHHHHHHSCCCEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEE-CH--HHHHHHHHHHHHHhCCCCEEE
Confidence            46888887 8999999999999999 99999888776655432   24332221 22  33333333322  24799999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      ++.|.
T Consensus        78 ~nAg~   82 (254)
T 1zmt_A           78 SNDIF   82 (254)
T ss_dssp             EECCC
T ss_pred             ECCCc
Confidence            99874

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.23  E-value=0.024  Score=48.62  Aligned_cols=79  Identities=25%  Similarity=0.260  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhhHHHH----HHcCCce-Ee--CCCCCCchH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEKA----KAFGVTE-FL--NPNDNNEPV  252 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~------------~~~~~~a----~~~g~~~-~i--~~~~~~~~~  252 (291)
                      .++++||.|+ +++|.+++..+...|+ +|+.++++            .++.+.+    +..+... .+  |..+ .++.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v   89 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD-RESL   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHH
Confidence            5789999987 8999999999999999 89999876            4444332    3334433 22  3322 1233


Q ss_pred             HHHHHHHh--cCCccEEEEccCC
Q 022819          253 QQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       253 ~~~~~~~~--~g~~d~vld~~g~  273 (291)
                      .+.+.+..  .+++|+++.+.|.
T Consensus        90 ~~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            33333322  2479999999885

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.22  E-value=0.016  Score=47.80  Aligned_cols=88  Identities=9%  Similarity=0.107  Sum_probs=55.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHH-HcCCCeEEEEcCChh-hHHHHHHcCCce-EeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          195 STVVIFGL-GTVGLSVAQGAK-ARGASRIIGVDTNPE-KCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~-~~g~~~vi~~~~~~~-~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      +++||+|+ |.+|..+++.+. ..|. +|++++++++ +.+.+...+... ++..+-.+.   +.+.+... ++|+++.+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~---~~~~~~~~-~~d~vv~~   80 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQNP---GXLEQAVT-NAEVVFVG   80 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTTCH---HHHHHHHT-TCSEEEES
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCCCH---HHHHHHHc-CCCEEEEc
Confidence            56999987 999999998888 8999 9999999988 665553222222 232221112   23333322 68999999


Q ss_pred             cCChHH-HHHHHHhhccC
Q 022819          271 IGDTGM-ITTALQSCCDV  287 (291)
Q Consensus       271 ~g~~~~-~~~~~~~l~~~  287 (291)
                      .|.... ...+++.++..
T Consensus        81 ag~~n~~~~~~~~~~~~~   98 (221)
T 3r6d_A           81 AMESGSDMASIVKALSRX   98 (221)
T ss_dssp             CCCCHHHHHHHHHHHHHT
T ss_pred             CCCCChhHHHHHHHHHhc
Confidence            986211 34455555443

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.22  E-value=0.015  Score=49.42  Aligned_cols=79  Identities=19%  Similarity=0.361  Sum_probs=48.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+ ++++... .+  |..+ .++..+.+.+..  .+++|
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id   83 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN-EADATAALAFAKQEFGHVH   83 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            5688999987 8999999999999999 899999888765544 3444322 22  3332 123333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        84 ~lv~nAg~   91 (257)
T 3tpc_A           84 GLVNCAGT   91 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.22  E-value=0.027  Score=47.70  Aligned_cols=41  Identities=15%  Similarity=0.328  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      +++++||+|+ |++|..++..+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4678999987 9999999999999999 999999988776554

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.22  E-value=0.018  Score=48.79  Aligned_cols=79  Identities=23%  Similarity=0.282  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh--HHHHHHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~--~~~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      +++++||.|+ |++|..+++.+...|+ +|+.+++++++  .+.+++.+... .+  |..+ .+++.+.+.+..  .+++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDPAPALAEIARHGVKAVHHPADLSD-VAQIEALFALAEREFGGV   80 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTSCCEEEECCCTTS-HHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHhcCCceEEEeCCCCC-HHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999999999999 89999887652  12223334332 22  3222 123333333221  2479


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++++.|.
T Consensus        81 d~lv~~Ag~   89 (255)
T 2q2v_A           81 DILVNNAGI   89 (255)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.21  E-value=0.019  Score=48.89  Aligned_cols=79  Identities=19%  Similarity=0.279  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ |++|..++..+...|+ +|+.++++.++.+.+.    +.+... +  .|..+ .++..+.+.+..  .+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH-SDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHhcC
Confidence            5688999987 9999999999999999 8999999988765542    234332 2  23332 123333333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999885

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.21  E-value=0.021  Score=49.16  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCCc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      ..++++||.|+ |++|.+++..+...|+ +|+.+++++++++.+ ++++... .+  |..+ .++..+.+.+..  .+++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~i  103 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD-PDSVRALFTATVEKFGRV  103 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCC
Confidence            35688899987 8999999999999999 899999998876654 3444222 22  3332 123333333322  2479


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus       104 D~lVnnAg~  112 (272)
T 4dyv_A          104 DVLFNNAGT  112 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.21  E-value=0.0081  Score=49.81  Aligned_cols=93  Identities=13%  Similarity=0.137  Sum_probs=64.4

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHc----CC-----c--eEeCCCCCCchHHHHHH
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----GV-----T--EFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~----g~-----~--~~i~~~~~~~~~~~~~~  257 (291)
                      .++++++||-+|+|. |..+..+++..|. .+|++++.+++.++.+++.    +.     .  .++..+.  ..   .  
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~---~--  145 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG--RM---G--  145 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG--GG---C--
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc--cc---C--
Confidence            377899999999874 7888888888763 2999999999988877542    21     1  1222211  10   0  


Q ss_pred             HHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ....+.||+|+........+..+.+.|+++|++
T Consensus       146 ~~~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~l  178 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRL  178 (226)
T ss_dssp             CGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEE
T ss_pred             cccCCCcCEEEECCchHHHHHHHHHhcCCCcEE
Confidence            011247999987766656778899999999976

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.21  E-value=0.032  Score=46.11  Aligned_cols=75  Identities=15%  Similarity=0.193  Sum_probs=54.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      +|+|+|+|.+|..+++.+...|. .|+++++++++.+.+. +.+...+. -+.   .-.+.+++..-..+|+++-+++..
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~~i~-gd~---~~~~~l~~a~i~~ad~vi~~~~~d   76 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKATIIH-GDG---SHKEILRDAEVSKNDVVVILTPRD   76 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSEEEE-SCT---TSHHHHHHHTCCTTCEEEECCSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCeEEE-cCC---CCHHHHHhcCcccCCEEEEecCCc
Confidence            47889999999999999999998 8999999999888754 45654332 221   112334444334799999999884


Q ss_pred             H
Q 022819          275 G  275 (291)
Q Consensus       275 ~  275 (291)
                      .
T Consensus        77 ~   77 (218)
T 3l4b_C           77 E   77 (218)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.20  E-value=0.013  Score=51.14  Aligned_cols=79  Identities=23%  Similarity=0.285  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCC---ce-Ee--CCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGV---TE-FL--NPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~---~~-~i--~~~~~~~~~~~~~~~~~-  260 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+.+++++++.+.+.    +.+.   .. .+  |..+ ..++.+.+.+.. 
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC-HHHHHHHHHHHHH
Confidence            4678999987 8999999999999999 8999999887765432    2232   22 22  3332 122333333221 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .+++|+++++.|.
T Consensus       103 ~~g~iD~lvnnAG~  116 (297)
T 1xhl_A          103 KFGKIDILVNNAGA  116 (297)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             2479999998873

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.20  E-value=0.021  Score=49.84  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457899999999999999999999998999998655

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.20  E-value=0.027  Score=49.05  Aligned_cols=79  Identities=23%  Similarity=0.264  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhhHHH----HHHcCCce-E--eCCCCCCchH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEK----AKAFGVTE-F--LNPNDNNEPV  252 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~------------~~~~~~----a~~~g~~~-~--i~~~~~~~~~  252 (291)
                      +++++||.|+ +++|.++++.+...|+ +|++++++            .++++.    +++.+... .  .|..+ ..+.
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v  104 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD-FDAM  104 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHH
Confidence            5789999987 8999999999999999 89998876            444332    23445433 2  23332 1233


Q ss_pred             HHHHHHHh--cCCccEEEEccCC
Q 022819          253 QQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       253 ~~~~~~~~--~g~~d~vld~~g~  273 (291)
                      .+.+.+..  .+++|+++++.|.
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            33333322  2479999998874

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.20  E-value=0.017  Score=49.09  Aligned_cols=79  Identities=14%  Similarity=0.254  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+    ++.+... .  .|..+ .++..+.+.+..  .+
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   90 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK-AEDRERLVAMAVNLHG   90 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            4688999987 9999999999999999 999999988765533    2234332 2  23322 123333333221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        91 ~iD~lv~~Ag~  101 (260)
T 2zat_A           91 GVDILVSNAAV  101 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.18  E-value=0.023  Score=48.23  Aligned_cols=79  Identities=22%  Similarity=0.252  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+  |..+ ..+..+.+.+..  .+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD-EQHREAVIKAALDQFG   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            5788999987 8999999999888999 8999999887765442    234333 22  3332 122333333222  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        89 ~id~lv~nAg~   99 (256)
T 3gaf_A           89 KITVLVNNAGG   99 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.17  E-value=0.0069  Score=51.66  Aligned_cols=75  Identities=23%  Similarity=0.275  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hhHHHHHHcCCceE---eCCCCCCchHHHHHHHH-hcCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP--EKCEKAKAFGVTEF---LNPNDNNEPVQQVIKRI-TDGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~--~~~~~a~~~g~~~~---i~~~~~~~~~~~~~~~~-~~g~~d  265 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++  +..+.+++.|....   .|..+ +..    +++. ..+++|
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d-~~~----v~~~~~~g~iD   81 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD-PLA----AKDSFTDAGFD   81 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS-TTT----TTTSSTTTCCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC-HHH----HHHHHHhCCCC
Confidence            5888999987 8999999999999999 899888864  34556667765442   23332 111    1221 235899


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        82 iLVNNAGi   89 (247)
T 4hp8_A           82 ILVNNAGI   89 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999885

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.17  E-value=0.021  Score=48.04  Aligned_cols=79  Identities=19%  Similarity=0.329  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce--Ee--CCCCCCchHHHHHHHHh-cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE--FL--NPNDNNEPVQQVIKRIT-DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~--~i--~~~~~~~~~~~~~~~~~-~g~~d  265 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++...  .+  |..+ .+++.+.+.+.. .+++|
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~id   87 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD-AEAMTAAAAEAEAVAPVS   87 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC-HHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC-HHHHHHHHHHHHhhCCCc
Confidence            4678999987 9999999999999999 899999988876544 3444322  22  3332 122222222211 25799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        88 ~li~~Ag~   95 (254)
T 2wsb_A           88 ILVNSAGI   95 (254)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999874

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.17  E-value=0.013  Score=46.67  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=64.6

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCC-ce--EeCCCCCCchHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGV-TE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~-~~--~i~~~~~~~~~~~~~~~  258 (291)
                      .+...+.++++||.+|+|. |..+..+++.. . ++++++.+++..+.+++    .+. ..  ++.     .++.+.   
T Consensus        26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~---   94 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME-----GDAPEA---   94 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE-----SCHHHH---
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcceEEEe-----cCHHHh---
Confidence            3445678899999999875 77777777766 4 99999999998888765    343 11  221     222221   


Q ss_pred             Hhc-CCccEEEEccC---ChHHHHHHHHhhccCccc
Q 022819          259 ITD-GGADYSFECIG---DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~-g~~d~vld~~g---~~~~~~~~~~~l~~~G~i  290 (291)
                      +.. +.+|+|+....   -...+..+.+.|+++|++
T Consensus        95 ~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l  130 (192)
T 1l3i_A           95 LCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRI  130 (192)
T ss_dssp             HTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEE
T ss_pred             cccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEE
Confidence            222 37999886533   146788888999999875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.16  E-value=0.019  Score=47.98  Aligned_cols=91  Identities=15%  Similarity=0.132  Sum_probs=62.5

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      .++++.+||-+|+| .|..+..+++. |+ ++++++.+++.++.+++.  ..++.     .+..+.+..+..+.+|+|+-
T Consensus        38 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~--~~~~~-----~d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           38 YFKGCRRVLDIGCG-RGEFLELCKEE-GI-ESIGVDINEDMIKFCEGK--FNVVK-----SDAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             GTTTCSCEEEETCT-TTHHHHHHHHH-TC-CEEEECSCHHHHHHHHTT--SEEEC-----SCHHHHHHTSCTTCBSEEEE
T ss_pred             hhcCCCeEEEEeCC-CCHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh--cceee-----ccHHHHhhhcCCCCeeEEEE
Confidence            35788999999886 34455556655 87 899999999999998876  22332     22323333334458999886


Q ss_pred             c-----cCC---hHHHHHHHHhhccCccc
Q 022819          270 C-----IGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       270 ~-----~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      .     +..   ...+..+.+.|++||++
T Consensus       108 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  136 (240)
T 3dli_A          108 SHFVEHLDPERLFELLSLCYSKMKYSSYI  136 (240)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHHBCTTCCE
T ss_pred             CCchhhCCcHHHHHHHHHHHHHcCCCcEE
Confidence            3     221   36788899999999986

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.16  E-value=0.042  Score=47.57  Aligned_cols=73  Identities=18%  Similarity=0.300  Sum_probs=51.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChH
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG  275 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~  275 (291)
                      +|.|+|+|.+|...+..+...|. +|+++++++++.+.+++.|...   .    .+..+.+.     .+|+||.++..+.
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~----~~~~~~~~-----~~D~vi~~v~~~~   73 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET---A----STAKAIAE-----QCDVIITMLPNSP   73 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---C----SSHHHHHH-----HCSEEEECCSSHH
T ss_pred             eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee---c----CCHHHHHh-----CCCEEEEECCCHH
Confidence            68999999999999988888898 8999999999888887766431   1    12222222     2678887777544


Q ss_pred             HHHHHH
Q 022819          276 MITTAL  281 (291)
Q Consensus       276 ~~~~~~  281 (291)
                      .++..+
T Consensus        74 ~~~~~~   79 (299)
T 1vpd_A           74 HVKEVA   79 (299)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.15  E-value=0.0042  Score=50.77  Aligned_cols=127  Identities=17%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             ceeeEEE-eeccceEECCCCCChhhhhhhhhhhhhhHhHHHhhc--CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 022819          147 SFSEYTV-VHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA--DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIG  223 (291)
Q Consensus       147 ~~~~~~~-~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~--~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~  223 (291)
                      .|.+|.. .+....+.+++.+.+.....-.    +..  +.+..  .+.++++||-+|+|. |..+..+++ .+..++++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~--~~~~l~~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~   88 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNHQT----TQL--AMLGIERAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLA   88 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCHHH----HHH--HHHHHHHHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCCcc----HHH--HHHHHHHhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEE
Confidence            4556555 5666777888877665542211    111  11111  256889999999875 667777776 45559999


Q ss_pred             EcCChhhHHHHHHc----CCc--eEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh---HHHHHHHHhhccCccc
Q 022819          224 VDTNPEKCEKAKAF----GVT--EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT---GMITTALQSCCDVRSI  290 (291)
Q Consensus       224 ~~~~~~~~~~a~~~----g~~--~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~---~~~~~~~~~l~~~G~i  290 (291)
                      ++.+++.++.+++.    +..  .++..+.  .+       ...+.+|+|+......   ..++.+.+.|+++|++
T Consensus        89 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~-------~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l  155 (205)
T 3grz_A           89 TDISDESMTAAEENAALNGIYDIALQKTSL--LA-------DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQV  155 (205)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCCEEEESST--TT-------TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEeccc--cc-------cCCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEE
Confidence            99999988887653    432  2222221  11       1224799988754432   2345556678888875

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.15  E-value=0.026  Score=48.53  Aligned_cols=79  Identities=22%  Similarity=0.239  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhhHHH----HHHcCCce-Ee--CCCCCCchH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEK----AKAFGVTE-FL--NPNDNNEPV  252 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~------------~~~~~~----a~~~g~~~-~i--~~~~~~~~~  252 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.++++            .++.+.    +++.+... .+  |..+ .++.
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v   86 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKD-RAAL   86 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHH
Confidence            5789999987 8999999999999999 89999886            333332    23345433 22  3332 1233


Q ss_pred             HHHHHHHh--cCCccEEEEccCC
Q 022819          253 QQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       253 ~~~~~~~~--~g~~d~vld~~g~  273 (291)
                      .+.+++..  .+++|+++++.|.
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           87 ESFVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCC
Confidence            33333321  2479999999884

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.15  E-value=0.019  Score=47.91  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCChhhHHHHHHc-CCce-Ee--CCCCCCchHHHHHH---HHhcC-
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARG--ASRIIGVDTNPEKCEKAKAF-GVTE-FL--NPNDNNEPVQQVIK---RITDG-  262 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g--~~~vi~~~~~~~~~~~a~~~-g~~~-~i--~~~~~~~~~~~~~~---~~~~g-  262 (291)
                      ++++||+|+ |++|..+++.+...|  . +|++++++.++.+.++++ +... ++  |..+ ...+.+.+.   +..+. 
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~~   80 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCC-HHHHHHHHHHHHHhcCCC
Confidence            578999987 999999999999999  7 999999998887766655 2222 22  3322 122222332   22221 


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|++|.+.|.
T Consensus        81 ~id~li~~Ag~   91 (250)
T 1yo6_A           81 GLSLLINNAGV   91 (250)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCcc
Confidence            79999998874

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.14  E-value=0.022  Score=50.09  Aligned_cols=46  Identities=37%  Similarity=0.552  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      .+.+|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.++++|+.
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~  186 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGK  186 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCE
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcc
Confidence            57899999999999999999999999 99999988776 556667753

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.13  E-value=0.0068  Score=50.21  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=64.4

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH----cCCce---EeCCCCCCchHHHHHHHHh
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTE---FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~----~g~~~---~i~~~~~~~~~~~~~~~~~  260 (291)
                      ....++.+||-+|+| .|..++.+++.++ ..+|++++.+++.++.+++    .|...   ++.     .+..+.+..+.
T Consensus        60 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~  133 (225)
T 3tr6_A           60 VKLMQAKKVIDIGTF-TGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL-----SPAKDTLAELI  133 (225)
T ss_dssp             HHHHTCSEEEEECCT-TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-----SCHHHHHHHHH
T ss_pred             HHhhCCCEEEEeCCc-chHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe-----CCHHHHHHHhh
Confidence            344577899999987 4778888888763 3499999999998887765    34332   221     22333333333


Q ss_pred             c----CCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 D----GGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~----g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      .    +.||+|+-....   ...++.+.+.|++||.|
T Consensus       134 ~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~l  170 (225)
T 3tr6_A          134 HAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLI  170 (225)
T ss_dssp             TTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             hccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEE
Confidence            2    479988843332   35678889999999976

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.13  E-value=0.032  Score=48.50  Aligned_cols=79  Identities=20%  Similarity=0.328  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCceEe--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTEFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g--~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |  ++|.++++.+...|+ +|+.++++++..+.++    +.+....+  |..+ .++..+.+.+..  .
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  106 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD-AESVDNMFKVLAEEW  106 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            5789999987 5  999999999999999 8999988876544433    33433333  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus       107 g~iD~lVnnAG~  118 (296)
T 3k31_A          107 GSLDFVVHAVAF  118 (296)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999885

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.12  E-value=0.031  Score=48.02  Aligned_cols=79  Identities=23%  Similarity=0.192  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhhHHHH----HHcCCce-Ee--CCCCCCchH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEKA----KAFGVTE-FL--NPNDNNEPV  252 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~------------~~~~~~a----~~~g~~~-~i--~~~~~~~~~  252 (291)
                      +++++||+|+ +++|.++++.+...|+ +|+.++++            .++.+.+    ++.+... .+  |..+ ..+.
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v   86 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD-RAAV   86 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC-HHHH
Confidence            5789999987 8999999999999999 89999876            4443332    3334333 22  3332 1233


Q ss_pred             HHHHHHHh--cCCccEEEEccCC
Q 022819          253 QQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       253 ~~~~~~~~--~g~~d~vld~~g~  273 (291)
                      .+.+.+..  .+++|+++++.|.
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~  109 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGI  109 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCc
Confidence            33333322  2479999999885

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.12  E-value=0.02  Score=49.40  Aligned_cols=79  Identities=20%  Similarity=0.248  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-HH----HHHHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CE----KAKAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-~~----~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.++++.++ .+    .+++.+... .+  |..+ ..++...+.+..  .
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEAVKIF  105 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            4678999987 8999999999999999 88888877543 22    223445433 22  3322 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus       106 g~iD~lv~~Ag~  117 (283)
T 1g0o_A          106 GKLDIVCSNSGV  117 (283)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999884

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.12  E-value=0.021  Score=48.09  Aligned_cols=79  Identities=22%  Similarity=0.336  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++ ++++.+.+    ++.+... .+  |..+ .+++.+.+++..  .
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN-AEDVTNMVKQTVDVF   80 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            3678999987 9999999999999999 8888887 66665433    2234332 22  3332 123333333321  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        81 g~id~lv~nAg~   92 (246)
T 2uvd_A           81 GQVDILVNNAGV   92 (246)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.10  E-value=0.051  Score=47.01  Aligned_cols=78  Identities=14%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc----CCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF----GVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~----g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|.+++..+...|+ +|+.+++++++.+.+. ++    +... ++  |..+ .+++.+.+.+..  .
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~  102 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIKVA  102 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999999999 8999999887765432 22    4322 22  3322 123333333321  2


Q ss_pred             CCccEEEEccC
Q 022819          262 GGADYSFECIG  272 (291)
Q Consensus       262 g~~d~vld~~g  272 (291)
                      +.+|+++.+.|
T Consensus       103 g~id~li~~Ag  113 (302)
T 1w6u_A          103 GHPNIVINNAA  113 (302)
T ss_dssp             CSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899999988

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.10  E-value=0.021  Score=48.56  Aligned_cols=79  Identities=15%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+ .+++++.+.+.    +.+... .+  |..+ ..+..+.+.+..  .
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ-PAKIKEMFQQIDETF   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            5788999987 8999999999999999 77775 78877655442    234333 22  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        81 g~id~lv~nAg~   92 (258)
T 3oid_A           81 GRLDVFVNNAAS   92 (258)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999873

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.08  E-value=0.021  Score=49.96  Aligned_cols=96  Identities=14%  Similarity=0.096  Sum_probs=65.9

Q ss_pred             HhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHH
Q 022819          186 WNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       186 ~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~---~~i~~~~~~~~~~~~~~  257 (291)
                      .+... +.++++||-+|+| .|..+..+++..++ +|++++.+++.++.+++    .|..   .++..+.  .++     
T Consensus       109 ~~~l~~~~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~-----  179 (312)
T 3vc1_A          109 MDHLGQAGPDDTLVDAGCG-RGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM--LDT-----  179 (312)
T ss_dssp             HTTSCCCCTTCEEEEESCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----
T ss_pred             HHHhccCCCCCEEEEecCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh--hcC-----
Confidence            34444 7889999999987 47777888887787 99999999998887765    3432   2222221  110     


Q ss_pred             HHhcCCccEEEEc-----cCChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFEC-----IGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~-----~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+..+.||+|+..     .+....+..+.+.|++||++
T Consensus       180 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l  217 (312)
T 3vc1_A          180 PFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRY  217 (312)
T ss_dssp             CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEE
T ss_pred             CCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEE
Confidence            0122479998763     23356789999999999986

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.07  E-value=0.023  Score=48.76  Aligned_cols=79  Identities=20%  Similarity=0.298  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-Ee--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+. +++... .+  |..+ ..++.+.+.+..  .+++|
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id   81 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD-GERIDVVAADVLARYGRVD   81 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC-HHHHHHHHHHHHHhCCCCC
Confidence            4678999987 9999999999999999 9999999888766553 444322 22  3332 123333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        82 ~lv~~Ag~   89 (281)
T 3m1a_A           82 VLVNNAGR   89 (281)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999884

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.07  E-value=0.028  Score=50.53  Aligned_cols=83  Identities=17%  Similarity=0.176  Sum_probs=55.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      -+|+|+|+|.+|..+++.+.. .. .|.+.+++.++++.+++......+|..+  .   +.+.++.. .+|+|+++++..
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d--~---~~l~~~~~-~~DvVi~~~p~~   88 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN--F---DKLVEVMK-EFELVIGALPGF   88 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC--H---HHHHHHHT-TCSEEEECCCGG
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC--H---HHHHHHHh-CCCEEEEecCCc
Confidence            369999999999988877754 34 7888889999988887654333445432  2   23344332 689999999875


Q ss_pred             HHHHHHHHhhc
Q 022819          275 GMITTALQSCC  285 (291)
Q Consensus       275 ~~~~~~~~~l~  285 (291)
                      .....+..++.
T Consensus        89 ~~~~v~~~~~~   99 (365)
T 3abi_A           89 LGFKSIKAAIK   99 (365)
T ss_dssp             GHHHHHHHHHH
T ss_pred             ccchHHHHHHh
Confidence            44443333433

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.07  E-value=0.017  Score=49.46  Aligned_cols=77  Identities=19%  Similarity=0.250  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H---c--CCce-Ee--CCCCCCchHHHHHHHHhcC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---F--GVTE-FL--NPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~---~--g~~~-~i--~~~~~~~~~~~~~~~~~~g  262 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. +   .  +... .+  |..+ .....+.+++  .+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~--~g   84 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT-EQGCQDVIEK--YP   84 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS-HHHHHHHHHH--CC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC-HHHHHHHHHh--cC
Confidence            5688999987 8999999999999999 9999999887655432 2   2  2211 22  3322 1222223332  25


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        85 ~id~lv~nAg~   95 (267)
T 3t4x_A           85 KVDILINNLGI   95 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.06  E-value=0.022  Score=48.71  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHHH-Hc----CCce-E--eCCCCCC----chHHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKAK-AF----GVTE-F--LNPNDNN----EPVQQVIKR  258 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a~-~~----g~~~-~--i~~~~~~----~~~~~~~~~  258 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+.+++ ++++.+.+. ++    +... .  .|..+ .    .++.+.+.+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL-SSSLLDCCEDIIDC   87 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-STTHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC-ccccHHHHHHHHHH
Confidence            4678999987 8999999999999999 9999988 777655432 22    4322 2  24433 2    223333332


Q ss_pred             Hh--cCCccEEEEccCC
Q 022819          259 IT--DGGADYSFECIGD  273 (291)
Q Consensus       259 ~~--~g~~d~vld~~g~  273 (291)
                      ..  .+++|+++++.|.
T Consensus        88 ~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHhcCCCCEEEECCCC
Confidence            21  2479999999884

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.06  E-value=0.017  Score=49.78  Aligned_cols=73  Identities=14%  Similarity=0.154  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++++++|+|+|++|.+++..+...|. +|++++++.++.+ ++++++....++..+ ..+    +.+   +.+|++++++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~-~~~----~~~---~~~DivVn~t  188 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS-MDE----LEG---HEFDLIINAT  188 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC-SGG----GTT---CCCSEEEECC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEec-HHH----hcc---CCCCEEEECC
Confidence            57899999999999999999999997 9999999988864 445554310011111 011    111   4789999998


Q ss_pred             CCh
Q 022819          272 GDT  274 (291)
Q Consensus       272 g~~  274 (291)
                      +..
T Consensus       189 ~~~  191 (271)
T 1nyt_A          189 SSG  191 (271)
T ss_dssp             SCG
T ss_pred             CCC
Confidence            863

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.05  E-value=0.047  Score=48.19  Aligned_cols=75  Identities=17%  Similarity=0.249  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC---hhhHHHH-HHc----CCc-eEeCCCCCCchHHHHHHHHhcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN---PEKCEKA-KAF----GVT-EFLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~---~~~~~~a-~~~----g~~-~~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      +++++||+|+|++|.+++..+...|+++|+++.++   .++.+.+ +++    +.. ..++..+ .+++.+.+.     .
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~-~~~l~~~l~-----~  226 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED-HEQLRKEIA-----E  226 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHH-----T
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch-HHHHHhhhc-----C
Confidence            67899999999999999999999999889889888   5554433 222    221 2333321 011222221     4


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+|+++++.
T Consensus       227 aDiIINaTp~  236 (315)
T 3tnl_A          227 SVIFTNATGV  236 (315)
T ss_dssp             CSEEEECSST
T ss_pred             CCEEEECccC
Confidence            7899988763

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.05  E-value=0.019  Score=49.67  Aligned_cols=79  Identities=23%  Similarity=0.347  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-----------HHHHHHcCCce-Ee--CCCCCCchHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-----------CEKAKAFGVTE-FL--NPNDNNEPVQQVIK  257 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-----------~~~a~~~g~~~-~i--~~~~~~~~~~~~~~  257 (291)
                      +++++||+|+ +++|.++++.+...|+ +|+.+++++++           .+.+++.+... .+  |..+ .++..+.+.
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~   85 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD-GDAVAAAVA   85 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS-HHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHH
Confidence            4688999987 8999999999999999 99999887652           22233344433 22  3332 123333333


Q ss_pred             HHh--cCCccEEEEccCC
Q 022819          258 RIT--DGGADYSFECIGD  273 (291)
Q Consensus       258 ~~~--~g~~d~vld~~g~  273 (291)
                      +..  .+++|+++++.|.
T Consensus        86 ~~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           86 KTVEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHHHSCCSEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            322  2479999999884

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.04  E-value=0.014  Score=49.70  Aligned_cols=79  Identities=15%  Similarity=0.249  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcC---CCeEEEEcCChhhHHHHHHc---CCce-Ee--CCCCCCchHHHHHHHH---
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARG---ASRIIGVDTNPEKCEKAKAF---GVTE-FL--NPNDNNEPVQQVIKRI---  259 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g---~~~vi~~~~~~~~~~~a~~~---g~~~-~i--~~~~~~~~~~~~~~~~---  259 (291)
                      +++++||+|+ |++|..+++.+...|   + +|++++++.++.+.++++   +... ++  |..+ .+++.+.+.+.   
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~   97 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEGV   97 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC-hHHHHHHHHHHHHh
Confidence            4678999987 999999999999999   7 999999887654444332   3222 22  3332 23333333322   


Q ss_pred             hcC-CccEEEEccCC
Q 022819          260 TDG-GADYSFECIGD  273 (291)
Q Consensus       260 ~~g-~~d~vld~~g~  273 (291)
                      .+. .+|++|.+.|.
T Consensus        98 ~g~~~id~li~~Ag~  112 (267)
T 1sny_A           98 TKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HGGGCCSEEEECCCC
T ss_pred             cCCCCccEEEECCCc
Confidence            222 69999999874

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.04  E-value=0.021  Score=48.08  Aligned_cols=79  Identities=16%  Similarity=0.256  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ |++|..++..+...|+ +|+++++++++.+.+    ++.+... .+  |..+ .+++.+.+.+..  .+
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   87 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISKLG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence            4678999987 9999999999999998 899999988765433    2234332 22  3322 122333333221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        88 ~~d~vi~~Ag~   98 (255)
T 1fmc_A           88 KVDILVNNAGG   98 (255)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.03  E-value=0.024  Score=48.73  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HH----cCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA----FGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~----~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.++++.++.+.+ ++    .+... .+  |..+ ..+..+.+.+..  .
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~  103 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA-PPAVMAAVDQALKEF  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            5789999987 8999999999999999 999999988765433 22    24332 22  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus       104 g~id~lv~nAg~  115 (277)
T 4fc7_A          104 GRIDILINCAAG  115 (277)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcC
Confidence            479999999883

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.03  E-value=0.046  Score=47.14  Aligned_cols=44  Identities=16%  Similarity=0.248  Sum_probs=38.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      +++++|+|+|++|.+++..+..+|. +|.++.++.+|.+.+.+++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~  161 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLG  161 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCC
Confidence            8899999999999999999999995 9999999988876554665

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.03  E-value=0.024  Score=49.20  Aligned_cols=79  Identities=20%  Similarity=0.299  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-HHH----HHHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CEK----AKAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-~~~----a~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++ .+.    +++.+... .+  |..+ ..+..+.+.+..  .
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD-EQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            5789999987 8999999999999999 88888877653 222    23344433 22  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus       124 g~iD~lvnnAg~  135 (291)
T 3ijr_A          124 GSLNILVNNVAQ  135 (291)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999998774

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.02  E-value=0.028  Score=48.71  Aligned_cols=78  Identities=15%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H--------cCCce-Ee--CCCCCCchHHHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A--------FGVTE-FL--NPNDNNEPVQQVIKRI  259 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~--------~g~~~-~i--~~~~~~~~~~~~~~~~  259 (291)
                      +++++||+|+ |++|..++..+...|+ +|+.++++.++.+.+. +        .+... .+  |..+ ..++...+.+.
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~   94 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVKST   94 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC-HHHHHHHHHHH
Confidence            4688999987 9999999999999999 8999999887665432 2        12222 22  3322 12333333332


Q ss_pred             h--cCCccEEEEccC
Q 022819          260 T--DGGADYSFECIG  272 (291)
Q Consensus       260 ~--~g~~d~vld~~g  272 (291)
                      .  .+.+|+++.+.|
T Consensus        95 ~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           95 LDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence            1  247999999988

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.01  E-value=0.018  Score=47.39  Aligned_cols=69  Identities=17%  Similarity=0.339  Sum_probs=49.7

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|||+|+ |.+|..++..+...|. +|+++++++++.+.+...+...+ .|..+  .+.    ..+  +++|+||.+.|.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d--~~~----~~~--~~~d~vi~~ag~   72 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLV--LTE----ADL--DSVDAVVDALSV   72 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGG--CCH----HHH--TTCSEEEECCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccc--ccH----hhc--ccCCEEEECCcc
Confidence            5899987 9999999999999998 99999999888765543344332 23322  222    122  378999999986

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.01  E-value=0.051  Score=47.64  Aligned_cols=44  Identities=20%  Similarity=0.383  Sum_probs=39.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      .+|.|+|.|.+|...++.+...|. .|++.++++++.+.+.+.|+
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~   65 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGA   65 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCC
Confidence            579999999999999999999998 99999999999888887765

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.00  E-value=0.036  Score=49.12  Aligned_cols=84  Identities=17%  Similarity=0.149  Sum_probs=58.7

Q ss_pred             CEEEEEcCChHHHHHHHHHH-H-cCCCeEEEEcCChhhHHH-HHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEc
Q 022819          195 STVVIFGLGTVGLSVAQGAK-A-RGASRIIGVDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFEC  270 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~-~-~g~~~vi~~~~~~~~~~~-a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~  270 (291)
                      -+|.|+|+|.+|...++.++ . .+++.+.+.++++++.+. ++++|+..+++      ++    .++... .+|+|+.+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~------~~----~~~l~~~~~D~V~i~   78 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT------NY----KDMIDTENIDAIFIV   78 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES------CH----HHHHTTSCCSEEEEC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC------CH----HHHhcCCCCCEEEEe
Confidence            47889999999998888876 4 366334456888877754 45677754442      22    223333 79999999


Q ss_pred             cCChHHHHHHHHhhccCc
Q 022819          271 IGDTGMITTALQSCCDVR  288 (291)
Q Consensus       271 ~g~~~~~~~~~~~l~~~G  288 (291)
                      ++.....+.+..+++.|-
T Consensus        79 tp~~~h~~~~~~al~~G~   96 (346)
T 3cea_A           79 APTPFHPEMTIYAMNAGL   96 (346)
T ss_dssp             SCGGGHHHHHHHHHHTTC
T ss_pred             CChHhHHHHHHHHHHCCC
Confidence            998777888888887653

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=95.99  E-value=0.03  Score=47.67  Aligned_cols=79  Identities=20%  Similarity=0.317  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHc-----CCc-eEe--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF-----GVT-EFL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~-----g~~-~~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++     +.. ..+  |..+ .+++.+.+.+..  
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH   83 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC-HHHHHHHHHHHHHH
Confidence            4678999987 9999999999999999 899999988765533 222     111 122  3332 123333333321  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+.+|+++++.|.
T Consensus        84 ~g~id~lv~~Ag~   96 (267)
T 2gdz_A           84 FGRLDILVNNAGV   96 (267)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2479999999884

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=95.98  E-value=0.0052  Score=51.37  Aligned_cols=99  Identities=13%  Similarity=0.100  Sum_probs=65.3

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC--ce--EeCCCCCCchHHHHHHHHhcC
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--TE--FLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~--~~--~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      +...++++++||-+|+|. |..+..+++..|..+|++++.+++.++.+++...  ..  ++..+.....  .. ..+ .+
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~-~~~-~~  142 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ--EY-ANI-VE  142 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG--GG-TTT-SC
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcc--cc-ccc-Cc
Confidence            344567899999999985 8888889988774499999999998887765321  11  2211111100  00 011 13


Q ss_pred             CccEEEEccCCh----HHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGDT----GMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~~----~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+..+..+    ..+..+.+.|+++|++
T Consensus       143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l  174 (230)
T 1fbn_A          143 KVDVIYEDVAQPNQAEILIKNAKWFLKKGGYG  174 (230)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             cEEEEEEecCChhHHHHHHHHHHHhCCCCcEE
Confidence            799998665543    3488888999999976

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.98  E-value=0.029  Score=49.34  Aligned_cols=81  Identities=23%  Similarity=0.302  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC----------hhhHH----HHHHcCCceE-eCCCCCC-chHHH
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN----------PEKCE----KAKAFGVTEF-LNPNDNN-EPVQQ  254 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~----------~~~~~----~a~~~g~~~~-i~~~~~~-~~~~~  254 (291)
                      -+++++||+|+ +++|.+++..+...|+ +|+.++++          .++.+    .+++.+.... +..+-.+ ++..+
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence            35788999987 8999999999999999 99999876          33333    2233454332 2222111 23333


Q ss_pred             HHHHHh--cCCccEEEEccCC
Q 022819          255 VIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       255 ~~~~~~--~g~~d~vld~~g~  273 (291)
                      .+.+..  .+++|+++.+.|.
T Consensus       104 ~~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          104 LIQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCC
Confidence            333322  2479999999884

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=95.97  E-value=0.02  Score=49.44  Aligned_cols=76  Identities=20%  Similarity=0.314  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce--Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE--FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~--~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+...  ++  |..+ ..+..+.+.+..  .
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED-MTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC-HHHHHHHHHHHHHHc
Confidence            3678999987 9999999999999999 9999999988766442    234322  22  3322 122323333221  2


Q ss_pred             CCccEEEEc
Q 022819          262 GGADYSFEC  270 (291)
Q Consensus       262 g~~d~vld~  270 (291)
                      +++|+++.+
T Consensus       105 g~iD~li~n  113 (286)
T 1xu9_A          105 GGLDMLILN  113 (286)
T ss_dssp             TSCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            479999988

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.96  E-value=0.034  Score=46.93  Aligned_cols=80  Identities=18%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hhHHHHHHc--CCce-E--eCCCCCC-chHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP--EKCEKAKAF--GVTE-F--LNPNDNN-EPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~--~~~~~a~~~--g~~~-~--i~~~~~~-~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|..+++.+...|+++|+.+++++  +..+.+++.  +... +  .|..+ . ++..+.+.+..  .
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV-PVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS-CHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC-ChHHHHHHHHHHHHhc
Confidence            4678999987 99999999999999994488887765  333333332  2222 2  23332 2 23333333322  1


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        83 g~id~lv~~Ag~   94 (254)
T 1sby_A           83 KTVDILINGAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999884

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.96  E-value=0.024  Score=48.79  Aligned_cols=77  Identities=21%  Similarity=0.260  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchH---HHHHHHHhc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPV---QQVIKRITD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~---~~~~~~~~~  261 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+  |..+ ..+.   .+.+.+.  
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~--  107 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE-AGAGTDLIERAEAI--  107 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS-TTHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC-HHHHHHHHHHHHHh--
Confidence            5788999987 8999999999999999 9999998877654432    234332 22  3332 2233   3333333  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus       108 g~iD~lvnnAg~  119 (275)
T 4imr_A          108 APVDILVINASA  119 (275)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            589999999884

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.95  E-value=0.01  Score=49.35  Aligned_cols=96  Identities=14%  Similarity=0.131  Sum_probs=65.6

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC---c-eEeCCCCCCchHHHHHHHHh
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV---T-EFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~---~-~~i~~~~~~~~~~~~~~~~~  260 (291)
                      +.+...+.++++||-+|+|. |..+..+++.. . ++++++.+++..+.+++...   . .++..+.  .+   .+  ..
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~--~~---~~--~~  131 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG--TL---GY--EE  131 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG--GG---CC--GG
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc--cc---cc--cc
Confidence            34556778899999999875 77788888764 5 99999999999888876421   1 2222211  11   00  01


Q ss_pred             cCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.+|+|+....-......+.+.|+++|++
T Consensus       132 ~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l  161 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTLLCKPYEQLKEGGIM  161 (231)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEE
T ss_pred             CCCccEEEECCcHHHHHHHHHHHcCCCcEE
Confidence            247999987655445567888999999975

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.95  E-value=0.0059  Score=50.87  Aligned_cols=90  Identities=18%  Similarity=0.114  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHh-cCCccEEEE
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRIT-DGGADYSFE  269 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~~i~~~~~~~~~~~~~~~~~-~g~~d~vld  269 (291)
                      .++.+||-+|+| .|..+..+++. +. +|++++.+++.++.+++.... .++..+. ...+     .+. .+.||+|+.
T Consensus        47 ~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~-----~~~~~~~fD~v~~  117 (226)
T 3m33_A           47 TPQTRVLEAGCG-HGPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNG-KGEL-----PAGLGAPFGLIVS  117 (226)
T ss_dssp             CTTCEEEEESCT-TSHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCS-CSSC-----CTTCCCCEEEEEE
T ss_pred             CCCCeEEEeCCC-CCHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcch-hhcc-----CCcCCCCEEEEEe
Confidence            678999999986 36667777776 77 999999999999988775221 2222221 0110     012 347999998


Q ss_pred             ccCChHHHHHHHHhhccCccc
Q 022819          270 CIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       270 ~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .......+..+.+.|+++|++
T Consensus       118 ~~~~~~~l~~~~~~LkpgG~l  138 (226)
T 3m33_A          118 RRGPTSVILRLPELAAPDAHF  138 (226)
T ss_dssp             ESCCSGGGGGHHHHEEEEEEE
T ss_pred             CCCHHHHHHHHHHHcCCCcEE
Confidence            866667889999999999986

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.95  E-value=0.024  Score=48.56  Aligned_cols=80  Identities=21%  Similarity=0.322  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH----HHcCCce-EeCCCCC-CchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-FLNPNDN-NEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a----~~~g~~~-~i~~~~~-~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++ +++..+.+    ++.+... ++..+-. ..+..+.+.+..  .+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5788999987 8999999999999999 8888888 44443332    3344333 2322221 133333333332  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus       107 ~id~li~nAg~  117 (271)
T 4iin_A          107 GLSYLVNNAGV  117 (271)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999885

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=95.94  E-value=0.015  Score=54.41  Aligned_cols=85  Identities=20%  Similarity=0.244  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      -.+++|.|+|.|.+|..+++.++.+|+ +|++++++..+...+...|...        .+    +.++. ...|+|+-++
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~~--------~~----l~ell-~~aDiVi~~~  340 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYRV--------VT----MEYAA-DKADIFVTAT  340 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCEE--------CC----HHHHT-TTCSEEEECS
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCEe--------CC----HHHHH-hcCCEEEECC
Confidence            478999999999999999999999999 9999999887754444555431        11    22221 2589999888


Q ss_pred             CChHHH-HHHHHhhccCccc
Q 022819          272 GDTGMI-TTALQSCCDVRSI  290 (291)
Q Consensus       272 g~~~~~-~~~~~~l~~~G~i  290 (291)
                      +....+ ...++.|+++..|
T Consensus       341 ~t~~lI~~~~l~~MK~gAil  360 (494)
T 3d64_A          341 GNYHVINHDHMKAMRHNAIV  360 (494)
T ss_dssp             SSSCSBCHHHHHHCCTTEEE
T ss_pred             CcccccCHHHHhhCCCCcEE
Confidence            654444 4566778877543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.94  E-value=0.026  Score=48.66  Aligned_cols=79  Identities=16%  Similarity=0.294  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ |++|..++..+...|+ +|+++++++++.+.+.    +.+... .  .|..+ .+++.+.+.+..  .+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~~  120 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTEHK  120 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC-HHHHHHHHHHHHHhcC
Confidence            4678999987 9999999998888898 8888888877655432    224332 2  23332 123333333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|++|.+.|.
T Consensus       121 ~id~li~~Ag~  131 (285)
T 2c07_A          121 NVDILVNNAGI  131 (285)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.94  E-value=0.035  Score=47.72  Aligned_cols=80  Identities=25%  Similarity=0.304  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-------------ChhhHHHH----HHcCCce-E--eCCCCCCc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-------------NPEKCEKA----KAFGVTE-F--LNPNDNNE  250 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-------------~~~~~~~a----~~~g~~~-~--i~~~~~~~  250 (291)
                      -+++++||.|+ +++|.++++.+...|+ +|+.+++             ++++.+.+    ++.+... .  .|..+ .+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~   90 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD-DA   90 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC-HH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HH
Confidence            46789999987 8999999999999999 8999887             45554433    2234333 2  23332 12


Q ss_pred             hHHHHHHHHh--cCCccEEEEccCC
Q 022819          251 PVQQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       251 ~~~~~~~~~~--~g~~d~vld~~g~  273 (291)
                      +..+.+.+..  .+++|+++++.|.
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3333333321  2479999999884

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=95.94  E-value=0.028  Score=45.98  Aligned_cols=94  Identities=11%  Similarity=0.053  Sum_probs=60.8

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-CC----------------c-eEeCCCCC
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GV----------------T-EFLNPNDN  248 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-g~----------------~-~~i~~~~~  248 (291)
                      ....+.++.+||.+|+| .|..+..+++. |. +|+++|.+++-++.+++. +.                . .++.-+..
T Consensus        16 ~~l~~~~~~~vLD~GCG-~G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~   92 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCG-KSQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   92 (203)
T ss_dssp             HHHCCCTTCEEEETTTC-CSHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HhcccCCCCEEEEeCCC-CcHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence            34456788999999986 46667777775 88 999999999998888753 21                0 12211110


Q ss_pred             CchHHHHHHHHhcCCccEEEEccCC--------hHHHHHHHHhhccCcc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIGD--------TGMITTALQSCCDVRS  289 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g~--------~~~~~~~~~~l~~~G~  289 (291)
                      +-.+..      .+.||+|++...-        ...++.+.+.|++||+
T Consensus        93 ~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~  135 (203)
T 1pjz_A           93 ALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS  135 (203)
T ss_dssp             SSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred             cCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence            111110      1369999973221        1356788899999997

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.94  E-value=0.042  Score=47.16  Aligned_cols=76  Identities=21%  Similarity=0.355  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHh-cCCccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRIT-DGGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~-~g~~d~  266 (291)
                      +++++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+ ++++... ++  |..+ .++..+.+.+.. .+++|+
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~id~  106 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS-EDSVLAAIEAANQLGRLRY  106 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHTTSSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCe
Confidence            4678999987 8999999999999999 999999998877655 3455433 22  3332 233344444431 137899


Q ss_pred             EEEc
Q 022819          267 SFEC  270 (291)
Q Consensus       267 vld~  270 (291)
                      ++.+
T Consensus       107 lv~~  110 (281)
T 3ppi_A          107 AVVA  110 (281)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9887

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=95.94  E-value=0.04  Score=47.44  Aligned_cols=79  Identities=23%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC----------------hhhHHHH----HHcCCce-E--eCCCCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN----------------PEKCEKA----KAFGVTE-F--LNPNDN  248 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~----------------~~~~~~a----~~~g~~~-~--i~~~~~  248 (291)
                      +++++||+|+ +++|.++++.+...|+ +|+.++++                +++++.+    +..+... .  .|..+ 
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-   87 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD-   87 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC-
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC-
Confidence            5789999987 8999999999999999 89998776                4444433    2234332 2  23332 


Q ss_pred             CchHHHHHHHHh--cCCccEEEEccCC
Q 022819          249 NEPVQQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       249 ~~~~~~~~~~~~--~g~~d~vld~~g~  273 (291)
                      .++..+.+.+..  .+++|+++++.|.
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            123333333322  2479999999884

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.93  E-value=0.027  Score=48.31  Aligned_cols=79  Identities=20%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-------HH----HHHHcCCce-E--eCCCCCCchHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-------CE----KAKAFGVTE-F--LNPNDNNEPVQQVIK  257 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-------~~----~a~~~g~~~-~--i~~~~~~~~~~~~~~  257 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.++++.++       ++    .++..+... .  .|..+ ..+..+.+.
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~   82 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE-EDQVRAAVA   82 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC-HHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHH
Confidence            5688999987 8999999999999999 89999887643       22    222334333 2  23332 123333333


Q ss_pred             HHh--cCCccEEEEccCC
Q 022819          258 RIT--DGGADYSFECIGD  273 (291)
Q Consensus       258 ~~~--~g~~d~vld~~g~  273 (291)
                      +..  .+++|+++++.|.
T Consensus        83 ~~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           83 ATVDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence            322  2479999999884

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=95.93  E-value=0.029  Score=47.08  Aligned_cols=78  Identities=22%  Similarity=0.269  Sum_probs=51.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc----CCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF----GVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~----g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++||+|+ |++|..++..+...|+ +|+++++++++.+.+. ++    +... .+  |..+ ..++.+.+.+..  .+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD-EGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence            578999987 9999999999999998 8999999887765442 22    2222 22  3322 123333333221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        80 ~id~li~~Ag~   90 (250)
T 2cfc_A           80 AIDVLVNNAGI   90 (250)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998873

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.92  E-value=0.028  Score=47.65  Aligned_cols=79  Identities=15%  Similarity=0.221  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCChhhHHHH----HHcCCc-eEe--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKA-RGASRIIGVDTNPEKCEKA----KAFGVT-EFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~-~g~~~vi~~~~~~~~~~~a----~~~g~~-~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|..++..+.. .|+ +|+.++++.++.+.+    +..+.. .++  |..+ ..++.+.+.+..  .
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHhc
Confidence            4678999987 9999999988888 899 999999987765433    222322 222  3322 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        81 g~id~li~~Ag~   92 (276)
T 1wma_A           81 GGLDVLVNNAGI   92 (276)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999874

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.92  E-value=0.016  Score=49.83  Aligned_cols=96  Identities=14%  Similarity=0.049  Sum_probs=64.7

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHHc-----CCce--EeCCCCCCchHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAF-----GVTE--FLNPNDNNEPVQQV  255 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~~-----g~~~--~i~~~~~~~~~~~~  255 (291)
                      +.+...+.++++||-+|+| .|..+..+++..  +. ++++++.+++..+.+++.     |.+.  ++..+.  .+    
T Consensus       102 ~~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~--~~----  173 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI--AD----  173 (275)
T ss_dssp             ----CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT--TT----
T ss_pred             HHHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch--hc----
Confidence            3455678899999999987 577777888873  45 999999999988887653     4322  222221  11    


Q ss_pred             HHHHhcCCccEEEEccCCh-HHHHHHHHhhccCccc
Q 022819          256 IKRITDGGADYSFECIGDT-GMITTALQSCCDVRSI  290 (291)
Q Consensus       256 ~~~~~~g~~d~vld~~g~~-~~~~~~~~~l~~~G~i  290 (291)
                        .+..+.+|+|+-....+ ..++.+.+.|+++|++
T Consensus       174 --~~~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l  207 (275)
T 1yb2_A          174 --FISDQMYDAVIADIPDPWNHVQKIASMMKPGSVA  207 (275)
T ss_dssp             --CCCSCCEEEEEECCSCGGGSHHHHHHTEEEEEEE
T ss_pred             --cCcCCCccEEEEcCcCHHHHHHHHHHHcCCCCEE
Confidence              11123799888765543 5688999999999975

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.91  E-value=0.019  Score=49.22  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc---C---Cce-E--eCCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF---G---VTE-F--LNPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~---g---~~~-~--i~~~~~~~~~~~~~~~~~-  260 (291)
                      .++++||+|+ |++|.+++..+...|+ +|+.+++++++.+.+. ++   .   ... .  .|..+ ..++.+.+.+.. 
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~   82 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG   82 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC-HHHHHHHHHHHHH
Confidence            4678999987 9999999999999999 9999999887765442 22   2   111 2  23332 122333333221 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .+++|+++++.|.
T Consensus        83 ~~g~id~lv~~Ag~   96 (278)
T 1spx_A           83 KFGKLDILVNNAGA   96 (278)
T ss_dssp             HHSCCCEEEECCC-
T ss_pred             HcCCCCEEEECCCC
Confidence             2479999999874

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.91  E-value=0.045  Score=47.52  Aligned_cols=80  Identities=18%  Similarity=0.281  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcC-Ch--HHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCceEe--CCCCCCchHHHHHHHHh--
Q 022819          192 SKGSTVVIFGL-GT--VGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTEFL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       192 ~~~~~vlV~G~-g~--~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      -+++++||.|+ |.  +|.++++.+...|+ +|+.++++++..+.++    +.+....+  |..+ .++..+.+++..  
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  106 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD-AASIDAVFETLEKK  106 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHh
Confidence            35789999986 56  99999999999999 8999988865444333    33433333  3332 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++++.|.
T Consensus       107 ~g~iD~lVnnAG~  119 (293)
T 3grk_A          107 WGKLDFLVHAIGF  119 (293)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            2479999999885

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.91  E-value=0.064  Score=46.17  Aligned_cols=79  Identities=22%  Similarity=0.287  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHHH-H---c-CCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKAK-A---F-GVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a~-~---~-g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      .++++||.|+ |++|.+++..+...|+ +|+.+++ ++++.+.+. +   . +... .+  |..+ .++..+.+.+..  
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK-PSEIADMMAMVADR  101 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC-HHHHHHHHHHHHHH
Confidence            4688999987 8999999999999999 9999988 545444332 2   2 3222 22  3322 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus       102 ~g~iD~lv~nAg~  114 (281)
T 3v2h_A          102 FGGADILVNNAGV  114 (281)
T ss_dssp             TSSCSEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            2479999999885

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.90  E-value=0.04  Score=47.56  Aligned_cols=46  Identities=13%  Similarity=0.181  Sum_probs=38.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK-AKAFG  238 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~-a~~~g  238 (291)
                      ++++++|+|+|++|.+++..+..+|+.+|+.+.++.++.+. +++++
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~  165 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELD  165 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            67899999999999999999999997789999999887654 44544

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.89  E-value=0.033  Score=48.94  Aligned_cols=80  Identities=23%  Similarity=0.253  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhhHHH----HHHcCCce-Ee--CCCCCCch
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEK----AKAFGVTE-FL--NPNDNNEP  251 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~------------~~~~~~----a~~~g~~~-~i--~~~~~~~~  251 (291)
                      -+++++||.|+ +++|.++++.+...|+ +|++++++            .++++.    +++.+... .+  |..+ ..+
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~  121 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD-LAS  121 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHH
Confidence            35789999987 8999999999999999 89988765            344332    23345433 22  3332 123


Q ss_pred             HHHHHHHHh--cCCccEEEEccCC
Q 022819          252 VQQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       252 ~~~~~~~~~--~g~~d~vld~~g~  273 (291)
                      ..+.+.+..  .+++|+++++.|.
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            333333322  2479999999884

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=95.88  E-value=0.022  Score=48.14  Aligned_cols=77  Identities=13%  Similarity=0.261  Sum_probs=51.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce-Ee--CCCCCCchHHHHHHHHhc--CCccEE
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FL--NPNDNNEPVQQVIKRITD--GGADYS  267 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~-~i--~~~~~~~~~~~~~~~~~~--g~~d~v  267 (291)
                      +++||.|+ |++|.++++.+...|+ +|+.+++++++.+.+. +++... .+  |..+ .+++.+.+.+...  +++|++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~l   78 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWCNIDIL   78 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHTSCTTTCCCCEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCCEE
Confidence            36788887 8999999999999999 9999999988766543 444322 22  3332 1233333433322  379999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        79 vnnAg~   84 (248)
T 3asu_A           79 VNNAGL   84 (248)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            998874

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=95.88  E-value=0.03  Score=47.33  Aligned_cols=79  Identities=19%  Similarity=0.209  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|..++..+...|+ +|+.+++ ++++.+.+    ++.+... ++  |..+ ..++.+.+.+..  .
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   83 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKEF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999999999 8999988 66655433    2234322 22  3322 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        84 g~id~li~~Ag~   95 (261)
T 1gee_A           84 GKLDVMINNAGL   95 (261)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999998873

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.85  E-value=0.08  Score=46.14  Aligned_cols=46  Identities=33%  Similarity=0.518  Sum_probs=41.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE  241 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~  241 (291)
                      .+|.|+|.|.+|...+..+...|. .|+++++++++.+.+.+.|...
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~   53 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACG   53 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCcc
Confidence            579999999999999999999998 9999999999999888877654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=95.85  E-value=0.034  Score=43.36  Aligned_cols=94  Identities=20%  Similarity=0.159  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHH-HhcCCccEEE
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR-ITDGGADYSF  268 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~-~~~g~~d~vl  268 (291)
                      ++++++||.+|+|. |..+..+++..|. .++++++.++ ..+.    .-..++..+..+....+.+.. +..+.+|+|+
T Consensus        20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~   93 (180)
T 1ej0_A           20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQVVM   93 (180)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEcccccchhhhhhhccCCCCceeEEE
Confidence            67889999999875 7788888888642 3999999877 3322    111233222211222223333 2334899998


Q ss_pred             Ec-----cCC------------hHHHHHHHHhhccCccc
Q 022819          269 EC-----IGD------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       269 d~-----~g~------------~~~~~~~~~~l~~~G~i  290 (291)
                      ..     .+.            ...+..+.+.|+++|++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l  132 (180)
T 1ej0_A           94 SDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSF  132 (180)
T ss_dssp             ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEE
Confidence            72     232            36688889999999975

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.84  E-value=0.049  Score=46.89  Aligned_cols=80  Identities=20%  Similarity=0.262  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      -.++++||.|+ |++|.++++.+...|+ +|+.+++ ++++.+.+    ++.+... .+  |..+ .++..+.+.+..  
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  104 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD-LSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS-GGGHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHH
Confidence            45788999987 8999999999999999 8888874 55554433    2334333 22  3332 233333333332  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence            2479999999885

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.84  E-value=0.058  Score=47.53  Aligned_cols=45  Identities=20%  Similarity=0.402  Sum_probs=39.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      ..+|.|+|.|.+|...++.+...|. .|+++++++++.+.+.+.|+
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~   75 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGA   75 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            4589999999999999999999998 89999999999888877665

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.84  E-value=0.019  Score=48.31  Aligned_cols=79  Identities=27%  Similarity=0.384  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-hhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~-~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|..++..+...|+ +|++++++ +++.+.+    +..+... .+  |..+ .+++.+.+.+..  .
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT-SEACQQLVDEFVAKF   83 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999999999 89999887 6555433    2224322 22  3322 123333333322  1


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        84 g~id~vi~~Ag~   95 (258)
T 3afn_B           84 GGIDVLINNAGG   95 (258)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.84  E-value=0.039  Score=46.89  Aligned_cols=79  Identities=23%  Similarity=0.368  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-C-hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-H---cCC-c-eEe--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-G-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---FGV-T-EFL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g-~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~---~g~-~-~~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      +++++||+|+ | ++|..++..+...|+ +|+.++++.++.+.+. +   .+. . .++  |..+ .+++.+.+.+..  
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS-TEAVDALITQTVEK   98 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC-HHHHHHHHHHHHHH
Confidence            5788999987 7 799999999999999 8999999988765443 2   221 1 122  3332 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+.+|+++.+.|.
T Consensus        99 ~g~id~li~~Ag~  111 (266)
T 3o38_A           99 AGRLDVLVNNAGL  111 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCcEEEECCCc
Confidence            2479999999884

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=95.82  E-value=0.034  Score=47.16  Aligned_cols=78  Identities=18%  Similarity=0.242  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh--HHHH-HH---cCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKA-KA---FGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~--~~~a-~~---~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      ++++||.|+ |++|.++++.+...|+ +|+.+++++++  .+.+ ++   .+... .+  |..+ .+++.+.+.+..  .
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD-KANFDSAIDEAAEKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            578999987 8999999998888899 89999888766  4332 22   24322 22  3332 123333333221  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        80 g~iD~lv~nAg~   91 (258)
T 3a28_C           80 GGFDVLVNNAGI   91 (258)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=95.81  E-value=0.012  Score=49.68  Aligned_cols=76  Identities=8%  Similarity=-0.007  Sum_probs=50.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-c--CChhhHHHH-HHc-CCceEeCCCCCCchHHHHHHHHhcCCccEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-D--TNPEKCEKA-KAF-GVTEFLNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~--~~~~~~~~a-~~~-g~~~~i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      ++++||.|+ |++|.++++.+...|+ +|+.+ +  +++++.+.+ +++ +. .+.+..+ -..+.+.+.+. .+++|++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~-v~~~~~~~~~~-~g~iD~l   76 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGT-IALAEQK-PERLVDATLQH-GEAIDTI   76 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTE-EECCCCC-GGGHHHHHGGG-SSCEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCC-cccCHHH-HHHHHHHHHHH-cCCCCEE
Confidence            367899987 8999999999999999 89998 6  888776654 344 32 2333221 12333333322 2479999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        77 v~~Ag~   82 (244)
T 1zmo_A           77 VSNDYI   82 (244)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999873

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.80  E-value=0.054  Score=46.77  Aligned_cols=87  Identities=15%  Similarity=0.222  Sum_probs=54.6

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-------hhHHHHH---HcCCceE-eCCCCCCchHHHHHHHHhc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-------EKCEKAK---AFGVTEF-LNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~-------~~~~~a~---~~g~~~~-i~~~~~~~~~~~~~~~~~~  261 (291)
                      ..+|+|+|+ |.+|..++..+...|. +|++++++.       ++.+.++   ..++..+ .|..+  .   +.+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d--~---~~l~~~~~   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND--H---ETLVKAIK   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC--H---HHHHHHHh
Confidence            357999987 9999999998888898 888888876       5544333   3354432 23332  2   23333332


Q ss_pred             CCccEEEEccCCh--HHHHHHHHhhccC
Q 022819          262 GGADYSFECIGDT--GMITTALQSCCDV  287 (291)
Q Consensus       262 g~~d~vld~~g~~--~~~~~~~~~l~~~  287 (291)
                       ++|+||.+.+..  .....+++.++..
T Consensus        76 -~~d~vi~~a~~~~~~~~~~l~~aa~~~  102 (307)
T 2gas_A           76 -QVDIVICAAGRLLIEDQVKIIKAIKEA  102 (307)
T ss_dssp             -TCSEEEECSSSSCGGGHHHHHHHHHHH
T ss_pred             -CCCEEEECCcccccccHHHHHHHHHhc
Confidence             699999998852  2233444444443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.80  E-value=0.067  Score=46.38  Aligned_cols=80  Identities=16%  Similarity=0.191  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hhHHH----HHHcCCceE-eCCCCCC-chHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP--EKCEK----AKAFGVTEF-LNPNDNN-EPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~--~~~~~----a~~~g~~~~-i~~~~~~-~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|.+++..+...|+ +|+.++++.  ++.+.    +++.+.... +..+-.+ ++..+.+.+..  .
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999987 8999999999999999 888887762  22222    233454332 2222111 22222333222  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus       127 g~iD~lv~nAg~  138 (294)
T 3r3s_A          127 GGLDILALVAGK  138 (294)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999998884

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=95.80  E-value=0.06  Score=46.44  Aligned_cols=49  Identities=20%  Similarity=0.324  Sum_probs=39.6

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcCC
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGV  239 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~~g~  239 (291)
                      +..+++++|+|+|+.|.+++..+..+|+.+|.++.++.+|.+ ++++++.
T Consensus       116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~  165 (271)
T 1npy_A          116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGY  165 (271)
T ss_dssp             CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            345678999999999999999999999878999999887744 4455553

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=95.80  E-value=0.041  Score=47.65  Aligned_cols=79  Identities=11%  Similarity=0.094  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhhHHHHH-----HcCCce-E--eCCCCCCc------------
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKCEKAK-----AFGVTE-F--LNPNDNNE------------  250 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~-~~~~~~~~a~-----~~g~~~-~--i~~~~~~~------------  250 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.++ +++++.+.+.     +.+... .  .|..+ ..            
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   85 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN-VATAPVSGADGSAP   85 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-SCBCCCC----CCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCC-cccccccccccccc
Confidence            4678999987 8999999999999999 899998 8887655432     234322 2  23332 12            


Q ss_pred             -----hHHHHHHHHh--cCCccEEEEccCC
Q 022819          251 -----PVQQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       251 -----~~~~~~~~~~--~g~~d~vld~~g~  273 (291)
                           +..+.+.+..  .+.+|+++++.|.
T Consensus        86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~  115 (291)
T 1e7w_A           86 VTLFTRCAELVAACYTHWGRCDVLVNNASS  115 (291)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             cchHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence                 4444443332  2479999999874

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=95.79  E-value=0.018  Score=53.78  Aligned_cols=84  Identities=26%  Similarity=0.371  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      -.+++|.|+|.|.+|..+++.++.+|+ +|++++++..+...+...|+. +       .++    .++. ...|+|+-++
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~-------~~l----~ell-~~aDiVi~~~  320 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V-------VTL----DEIV-DKGDFFITCT  320 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E-------CCH----HHHT-TTCSEEEECC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-e-------cCH----HHHH-hcCCEEEECC
Confidence            478999999999999999999999999 999999988775445555552 1       111    2221 2578888876


Q ss_pred             CChHHH-HHHHHhhccCcc
Q 022819          272 GDTGMI-TTALQSCCDVRS  289 (291)
Q Consensus       272 g~~~~~-~~~~~~l~~~G~  289 (291)
                      +....+ ...++.|+++..
T Consensus       321 ~t~~lI~~~~l~~MK~gai  339 (479)
T 1v8b_A          321 GNVDVIKLEHLLKMKNNAV  339 (479)
T ss_dssp             SSSSSBCHHHHTTCCTTCE
T ss_pred             ChhhhcCHHHHhhcCCCcE
Confidence            654443 355566776654

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.78  E-value=0.032  Score=49.32  Aligned_cols=78  Identities=21%  Similarity=0.279  Sum_probs=50.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-----hhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-----PEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~-----~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~  260 (291)
                      ++++||+|+ |++|.++++.+...|+ +|+++.++     +++.+.+    +..+... .  .|..+ ..++.+.+.+..
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd-~~~v~~~~~~~~   82 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS-QVSVDRAIDQII   82 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHH
Confidence            578999987 9999999999999999 88887654     3443333    2234332 2  23332 233333343332


Q ss_pred             --cCCccEEEEccCC
Q 022819          261 --DGGADYSFECIGD  273 (291)
Q Consensus       261 --~g~~d~vld~~g~  273 (291)
                        .+++|+++++.|.
T Consensus        83 ~~~g~iD~lVnnAG~   97 (324)
T 3u9l_A           83 GEDGRIDVLIHNAGH   97 (324)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence              2489999999883

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.78  E-value=0.021  Score=49.12  Aligned_cols=77  Identities=14%  Similarity=0.131  Sum_probs=51.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC---ceEe--CCCCCCchHHHHHHHHh--cCCcc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGV---TEFL--NPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~---~~~i--~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+. ++..   ...+  |..+ .++..+.+.+..  .+.+|
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD   99 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD-RAAMSAAVDNLPEEFATLR   99 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHTCCGGGSSCC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhCCCC
Confidence            68899987 8999999999999999 9999999988766543 3321   1222  3332 123333333322  24789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus       100 ~lvnnAG~  107 (272)
T 2nwq_A          100 GLINNAGL  107 (272)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.78  E-value=0.045  Score=45.57  Aligned_cols=73  Identities=19%  Similarity=0.105  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      .+.+|||+|+ |.+|..+++.+...  |. +|+++++++++.+.+ ..+... ..|..+  .   +.+.++.. ++|+||
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~d--~---~~~~~~~~-~~d~vi   74 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDITD--A---DSINPAFQ-GIDALV   74 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTTS--H---HHHHHHHT-TCSEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCCC--H---HHHHHHHc-CCCEEE
Confidence            4578999987 99999999999888  77 999999987765433 112222 123322  2   23333332 589999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.+.
T Consensus        75 ~~a~~   79 (253)
T 1xq6_A           75 ILTSA   79 (253)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            98874

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.77  E-value=0.043  Score=47.08  Aligned_cols=79  Identities=22%  Similarity=0.315  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ +++|.++++.+...|+ +|+.+++ +.++.+.+    ++.+... .+  |..+ .++..+.+.+..  .
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD-AEAIEQAIRETVEAL  107 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            5789999987 8999999999999999 7877744 44444332    3345433 22  3322 133333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus       108 g~iD~lvnnAg~  119 (271)
T 3v2g_A          108 GGLDILVNSAGI  119 (271)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            479999999874

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.75  E-value=0.025  Score=47.83  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      +++++||.|+ |++|.+++..+...|+ +|++++++++.    ++.+... ..|..+ .+++.+.+.+..  .+++|+++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~id~lv   79 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD-AAQVAQVCQRLLAETERLDALV   79 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC-HHHHHHHHHHHHHHCSCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 9999999999999999 89999887653    2234222 223332 133333333322  24799999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      ++.|.
T Consensus        80 ~~Ag~   84 (250)
T 2fwm_X           80 NAAGI   84 (250)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99874

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.73  E-value=0.011  Score=49.57  Aligned_cols=86  Identities=13%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++|||+|+ |.+|..+++.+...| . +|+++++++++.+.+...++..+ .|..+  .+   .+.+... ++|+||.+.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d--~~---~~~~~~~-~~D~vv~~a   96 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQIIMGDVLN--HA---ALKQAMQ-GQDIVYANL   96 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEEEEECCTTC--HH---HHHHHHT-TCSEEEEEC
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcEEEEecCCC--HH---HHHHHhc-CCCEEEEcC
Confidence            57999987 999999999999999 7 89999998876543222122211 23322  22   2333322 689999998


Q ss_pred             CChHH---HHHHHHhhccC
Q 022819          272 GDTGM---ITTALQSCCDV  287 (291)
Q Consensus       272 g~~~~---~~~~~~~l~~~  287 (291)
                      +....   .+.+++.++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~  115 (236)
T 3qvo_A           97 TGEDLDIQANSVIAAMKAC  115 (236)
T ss_dssp             CSTTHHHHHHHHHHHHHHT
T ss_pred             CCCchhHHHHHHHHHHHHc
Confidence            87432   34455555443

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.72  E-value=0.081  Score=45.75  Aligned_cols=89  Identities=12%  Similarity=0.134  Sum_probs=54.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-----hhhHHHHHH---cCCceEeCCCCCCchHHHHHHHHhcCCc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-----PEKCEKAKA---FGVTEFLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~-----~~~~~~a~~---~g~~~~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      ..+|+|+|+ |.+|..++..+...|. +|++++++     +++.+.++.   .++. ++..+-.+.   +.+.+... ++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~~-~~~~D~~d~---~~l~~~~~-~~   77 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAK-LIEASLDDH---QRLVDALK-QV   77 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCE-EECCCSSCH---HHHHHHHT-TC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcccchhHHHHHHHHHhCCeE-EEeCCCCCH---HHHHHHHh-CC
Confidence            357999987 9999999999998998 89999887     344444332   3433 332221112   23333333 69


Q ss_pred             cEEEEccCCh------HHHHHHHHhhccCc
Q 022819          265 DYSFECIGDT------GMITTALQSCCDVR  288 (291)
Q Consensus       265 d~vld~~g~~------~~~~~~~~~l~~~G  288 (291)
                      |+||.+.+..      .....+++.++..|
T Consensus        78 d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           78 DVVISALAGGVLSHHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             SEEEECCCCSSSSTTTTTHHHHHHHHHHSC
T ss_pred             CEEEECCccccchhhHHHHHHHHHHHHhcC
Confidence            9999988752      12344555555444

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.71  E-value=0.053  Score=46.05  Aligned_cols=97  Identities=18%  Similarity=0.259  Sum_probs=66.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~  257 (291)
                      +.+...+.++.+||-+|+|. |..+..+++..+. ++++++.+++.++.+++.    |..   .++..+.  .++     
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-----  123 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADA--MDL-----  123 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc--ccC-----
Confidence            45666778999999999873 7778888887787 999999999988877653    321   2222221  110     


Q ss_pred             HHhcCCccEEEEc-----cC-ChHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFEC-----IG-DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~-----~g-~~~~~~~~~~~l~~~G~i  290 (291)
                      .+..+.+|+|+-.     +. ....++.+.+.|++||++
T Consensus       124 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  162 (273)
T 3bus_A          124 PFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTV  162 (273)
T ss_dssp             CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEE
T ss_pred             CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEE
Confidence            0112378988743     21 245688889999999975

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.71  E-value=0.0083  Score=50.57  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=47.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh--cCCccEEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT--DGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~--~g~~d~vld  269 (291)
                      .++++||.|+ |++|.++++.+.. |. +|+.+++++++.+.+.+......+..+-.+....+.+.+..  .+++|+++.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            4678999987 8999988887755 87 89999999988877766432223322110000000111111  137899999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        82 ~Ag~   85 (245)
T 3e9n_A           82 AAAV   85 (245)
T ss_dssp             CC--
T ss_pred             CCCc
Confidence            9885

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.70  E-value=0.093  Score=46.22  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=34.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC---hhhHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN---PEKCE  232 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~---~~~~~  232 (291)
                      +++++||+|+|+.|.+++..+..+|+++|+++.++   .++.+
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~  189 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAV  189 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHH
Confidence            57899999999999999999999999889999898   55544

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=95.70  E-value=0.05  Score=46.62  Aligned_cols=79  Identities=24%  Similarity=0.282  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-------------ChhhHHHH----HHcCCce-E--eCCCCCCch
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-------------NPEKCEKA----KAFGVTE-F--LNPNDNNEP  251 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-------------~~~~~~~a----~~~g~~~-~--i~~~~~~~~  251 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++             +.++.+.+    +..+... .  .|..+ .++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~   87 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD-FDR   87 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHH
Confidence            5789999987 8999999999999999 8999877             44444332    2334333 2  23332 123


Q ss_pred             HHHHHHHHh--cCCccEEEEccCC
Q 022819          252 VQQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       252 ~~~~~~~~~--~g~~d~vld~~g~  273 (291)
                      ..+.+.+..  .+++|+++++.|.
T Consensus        88 v~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            333333322  2479999999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.68  E-value=0.028  Score=50.07  Aligned_cols=94  Identities=13%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC------C---ce-EeCCCCCCchHHHHHHHHh
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG------V---TE-FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g------~---~~-~i~~~~~~~~~~~~~~~~~  260 (291)
                      ..++++||++|+| .|..+..+++..+..+|++++.+++-.+.+++.-      .   .. ++.     .+..+.+....
T Consensus       118 ~~~~~~VLdIG~G-~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~-----~D~~~~l~~~~  191 (334)
T 1xj5_A          118 IPNPKKVLVIGGG-DGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI-----GDGVAFLKNAA  191 (334)
T ss_dssp             SSCCCEEEEETCS-SSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE-----SCHHHHHHTSC
T ss_pred             CCCCCEEEEECCC-ccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE-----CCHHHHHHhcc
Confidence            3567899999875 4666677777665459999999999888887631      1   11 221     23333443333


Q ss_pred             cCCccEEEEccC----------ChHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIG----------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g----------~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.||+|+-...          ....++.+.+.|+++|.|
T Consensus       192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~l  231 (334)
T 1xj5_A          192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVV  231 (334)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEE
T ss_pred             CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEE
Confidence            347998875322          246788999999999976

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.68  E-value=0.045  Score=48.23  Aligned_cols=46  Identities=28%  Similarity=0.414  Sum_probs=39.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      .+++|.|+|.|.+|...++.++.+|+ +|++.+++.++. .++++|+.
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~  186 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAK  186 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCce
Confidence            57899999999999999999999999 999999887664 45666654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.68  E-value=0.039  Score=46.17  Aligned_cols=79  Identities=23%  Similarity=0.284  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+++ .+++++.+.+    ++.+... .+  |..+ ..++.+.+.+..  .
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   81 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN-PEDVENMVKTAMDAF   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHhc
Confidence            4678999987 9999999999999999 88888 5555544332    2334332 22  3332 122333333221  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        82 ~~~d~vi~~Ag~   93 (247)
T 2hq1_A           82 GRIDILVNNAGI   93 (247)
T ss_dssp             SCCCEEEECC--
T ss_pred             CCCCEEEECCCC
Confidence            479999999875

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.67  E-value=0.017  Score=50.00  Aligned_cols=90  Identities=14%  Similarity=0.114  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC-----C---------ce--EeCCCCCCchHHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG-----V---------TE--FLNPNDNNEPVQQV  255 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g-----~---------~~--~i~~~~~~~~~~~~  255 (291)
                      .++++||++|+| .|..+..+++. +..++++++.+++-.+.+++.-     .         ..  ++.     .+..+.
T Consensus        74 ~~~~~VLdiG~G-~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~-----~D~~~~  146 (281)
T 1mjf_A           74 PKPKRVLVIGGG-DGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-----GDGFEF  146 (281)
T ss_dssp             SCCCEEEEEECT-TSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-----SCHHHH
T ss_pred             CCCCeEEEEcCC-cCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE-----CchHHH
Confidence            456899999875 35666677776 6669999999999998887631     1         11  111     233333


Q ss_pred             HHHHhcCCccEEEEccC----------ChHHHHHHHHhhccCccc
Q 022819          256 IKRITDGGADYSFECIG----------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       256 ~~~~~~g~~d~vld~~g----------~~~~~~~~~~~l~~~G~i  290 (291)
                      +..  .+.+|+|+-...          ....++.+.+.|+++|.+
T Consensus       147 l~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~l  189 (281)
T 1mjf_A          147 IKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIY  189 (281)
T ss_dssp             HHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEE
T ss_pred             hcc--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEE
Confidence            443  458997774332          245788999999999975

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.67  E-value=0.11  Score=44.06  Aligned_cols=34  Identities=29%  Similarity=0.459  Sum_probs=29.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      +.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5789999999999999999999999888888654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.67  E-value=0.024  Score=47.93  Aligned_cols=95  Identities=17%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc--eEeCCCCCCchHHHHHHHH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT--EFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~--~~i~~~~~~~~~~~~~~~~  259 (291)
                      .+.....++.+||-+|+| .|..+..+++. +. +++++|.+++.++.+++.    +..  .++..+.  .++     .+
T Consensus        30 ~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~l-----~~   99 (260)
T 1vl5_A           30 MQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA--EQM-----PF   99 (260)
T ss_dssp             HHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC---CC-----CS
T ss_pred             HHHhCCCCCCEEEEEeCC-CCHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH--HhC-----CC
Confidence            444566789999999987 56666677665 44 999999999988887653    322  1222221  111     12


Q ss_pred             hcCCccEEEEccCC------hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIGD------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g~------~~~~~~~~~~l~~~G~i  290 (291)
                      .++.||+|+....-      ...+..+.+.|++||++
T Consensus       100 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l  136 (260)
T 1vl5_A          100 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQL  136 (260)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEE
Confidence            22479998875332      46788999999999976

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=95.67  E-value=0.026  Score=49.02  Aligned_cols=45  Identities=27%  Similarity=0.352  Sum_probs=37.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      .++++||-+|+| .|..++.+++..+..+|+++|.+++-++.+++.
T Consensus        45 ~~~~~VLDiGCG-~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           45 FRGRDVLDLGCN-VGHLTLSIACKWGPSRMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             TTTSEEEEESCT-TCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHT
T ss_pred             cCCCcEEEeCCC-CCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence            467899999987 478888889887655999999999988888764

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.66  E-value=0.03  Score=47.44  Aligned_cols=79  Identities=11%  Similarity=0.178  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHH---cCCCeEEEEcCChhhHHHHH-Hc-----CCce-E--eCCCCCCchHHHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKA---RGASRIIGVDTNPEKCEKAK-AF-----GVTE-F--LNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~---~g~~~vi~~~~~~~~~~~a~-~~-----g~~~-~--i~~~~~~~~~~~~~~~~  259 (291)
                      +++++||.|+ |++|.+++..+..   .|+ +|+.+++++++.+.+. ++     +... .  .|..+ .++..+.+.+.
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~   82 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT-EAGVQRLLSAV   82 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS-HHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC-HHHHHHHHHHH
Confidence            3578889887 8999999988877   899 9999999887765442 22     3322 2  23332 23334444443


Q ss_pred             hc----CCcc--EEEEccCC
Q 022819          260 TD----GGAD--YSFECIGD  273 (291)
Q Consensus       260 ~~----g~~d--~vld~~g~  273 (291)
                      ..    +.+|  +++++.|.
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~  102 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAAT  102 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCC
T ss_pred             HhccccccCCccEEEECCcc
Confidence            22    4678  99998874

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.045  Score=47.45  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCC--CeEEEEcCChhhHHHHHH-c-----CCce-E--eCCCCCCchHHHHHHHHh
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGA--SRIIGVDTNPEKCEKAKA-F-----GVTE-F--LNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~--~~vi~~~~~~~~~~~a~~-~-----g~~~-~--i~~~~~~~~~~~~~~~~~  260 (291)
                      +++++||+|+ +++|.+++..+...|+  .+|+.+++++++.+.+.+ +     +... .  .|..+ .++..+.+.+..
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~  110 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ-AEKIKPFIENLP  110 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC-GGGHHHHHHTSC
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHH
Confidence            4689999987 8999998877766664  388999999887665532 2     3322 2  24332 244444554432


Q ss_pred             c--CCccEEEEccCC
Q 022819          261 D--GGADYSFECIGD  273 (291)
Q Consensus       261 ~--g~~d~vld~~g~  273 (291)
                      .  +++|+++++.|.
T Consensus       111 ~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          111 QEFKDIDILVNNAGK  125 (287)
T ss_dssp             GGGCSCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            2  479999999884

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.64  E-value=0.044  Score=46.42  Aligned_cols=77  Identities=19%  Similarity=0.345  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-Ee--CCCCCCchHHHHHHHHh-cCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FL--NPNDNNEPVQQVIKRIT-DGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~-~g~~d~v  267 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.++++.++  ..++++... .+  |..+ .++....+.... .+++|++
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~g~id~l   83 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGED--VVADLGDRARFAAADVTD-EAAVASALDLAETMGTLRIV   83 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHH--HHHHTCTTEEEEECCTTC-HHHHHHHHHHHHHHSCEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHH--HHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhCCCCEE
Confidence            4688999987 8999999999999999 89998875443  344455433 22  3332 122222222111 2589999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        84 v~nAg~   89 (257)
T 3tl3_A           84 VNCAGT   89 (257)
T ss_dssp             EECGGG
T ss_pred             EECCCC
Confidence            999984

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.61  E-value=0.034  Score=47.42  Aligned_cols=74  Identities=15%  Similarity=0.218  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      +++++||.|+ |++|.+++..+...|+ +|+++++++++     ...+.. ..|..+ .+++.+.+.+..  .+++|+++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~iD~lv   79 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTN-PDQVKASIDHIFKEYGSISVLV   79 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTC-HHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 9999999999999999 89999887655     111111 223332 123333333322  24799999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        80 ~~Ag~   84 (264)
T 2dtx_A           80 NNAGI   84 (264)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99884

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=95.61  E-value=0.038  Score=47.13  Aligned_cols=79  Identities=16%  Similarity=0.224  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh---hHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~---~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~-  260 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++...   +.+.+    ++.+... .  .|..+ .++..+.+.+.. 
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~   87 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN-EEEVAKLFDFAEK   87 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence            5788999987 8999999999999999 8888765432   33222    2224332 2  23332 123333333322 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .+++|+++++.|.
T Consensus        88 ~~g~iD~lvnnAg~  101 (262)
T 3ksu_A           88 EFGKVDIAINTVGK  101 (262)
T ss_dssp             HHCSEEEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             2479999999883

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=95.60  E-value=0.059  Score=47.47  Aligned_cols=79  Identities=23%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC---------ChhhHHH----HHHcCCceEeCCCCCCchHHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT---------NPEKCEK----AKAFGVTEFLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~---------~~~~~~~----a~~~g~~~~i~~~~~~~~~~~~~~~  258 (291)
                      .++++||.|+ |++|..+++.+...|+ +|+++++         +.++.+.    ++..+.....|..+ ..+....+.+
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~-~~~~~~~~~~   85 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLVKT   85 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCC-HHHHHHHHHH
Confidence            4678999987 8999999999999999 8888653         4444332    23334444455543 2333333333


Q ss_pred             Hh--cCCccEEEEccCC
Q 022819          259 IT--DGGADYSFECIGD  273 (291)
Q Consensus       259 ~~--~g~~d~vld~~g~  273 (291)
                      ..  .+++|+++++.|.
T Consensus        86 ~~~~~g~iD~lVnnAG~  102 (319)
T 1gz6_A           86 ALDTFGRIDVVVNNAGI  102 (319)
T ss_dssp             HHHHTSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            21  2479999999883

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.59  E-value=0.052  Score=46.81  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hhHHHH-H----HcCCce-Ee--CCCCC---CchHHHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCEKA-K----AFGVTE-FL--NPNDN---NEPVQQVIKRI  259 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~~~a-~----~~g~~~-~i--~~~~~---~~~~~~~~~~~  259 (291)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++ ++.+.+ +    +.+... .+  |..+.   ..++.+.+.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            4678999987 8999999999999999 899998887 554433 2    234322 22  33210   12233333322


Q ss_pred             h--cCCccEEEEccCC
Q 022819          260 T--DGGADYSFECIGD  273 (291)
Q Consensus       260 ~--~g~~d~vld~~g~  273 (291)
                      .  .+++|+++++.|.
T Consensus       101 ~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          101 FRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence            1  2479999999884

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.58  E-value=0.092  Score=45.34  Aligned_cols=41  Identities=24%  Similarity=0.417  Sum_probs=36.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      ++|.|+|+|.+|...++.+...|. +|+.+++++++++.+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence            579999999999999999999999 99999999988776654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=95.58  E-value=0.016  Score=49.82  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=62.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE--eCCCCCCchHHHHHHHHhcC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF--LNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~--i~~~~~~~~~~~~~~~~~~g  262 (291)
                      +.+...+.++.+||-+|+| .|..++.+++. |. +|++++.+++-++.+++.-....  .+..+....    +.....+
T Consensus        37 il~~l~l~~g~~VLDlGcG-tG~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~----~~~~~~~  109 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGAS-TRFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAE----IPKELAG  109 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTT-CHHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSC----CCGGGTT
T ss_pred             HHHhcCCCCcCEEEEEeCc-chHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccc----cccccCC
Confidence            3455677899999999987 57777777764 77 99999999999999876432211  111110000    0001124


Q ss_pred             CccEEEEccCC--------hHHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                      .||+|+-+..-        ...+....++| +||++
T Consensus       110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l  144 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTV  144 (261)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEE
T ss_pred             CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEE
Confidence            79988864321        23567777788 99975

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.58  E-value=0.1  Score=47.63  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCC--CeEEEEcCChhhHHHHH-HcC------Cce-EeCCCCCCchHHHHHHHHhcCCc
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGA--SRIIGVDTNPEKCEKAK-AFG------VTE-FLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~--~~vi~~~~~~~~~~~a~-~~g------~~~-~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      .+|+|+|+|.+|..+++.+...|.  ..|++.+++.++.+.+. +++      ... ..|..+ ..++.+.+++.   .+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d-~~~l~~~l~~~---~~   77 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS-IEELVALINEV---KP   77 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC-HHHHHHHHHHH---CC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC-HHHHHHHHHhh---CC
Confidence            378999999999999998888773  38899999988876543 332      211 223321 12333333332   68


Q ss_pred             cEEEEccCChHHHHHHHHhh
Q 022819          265 DYSFECIGDTGMITTALQSC  284 (291)
Q Consensus       265 d~vld~~g~~~~~~~~~~~l  284 (291)
                      |+|+++++.......+..++
T Consensus        78 DvVin~ag~~~~~~v~~a~l   97 (405)
T 4ina_A           78 QIVLNIALPYQDLTIMEACL   97 (405)
T ss_dssp             SEEEECSCGGGHHHHHHHHH
T ss_pred             CEEEECCCcccChHHHHHHH
Confidence            99999998643333333333

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=95.57  E-value=0.062  Score=46.33  Aligned_cols=92  Identities=10%  Similarity=0.093  Sum_probs=63.7

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHHHHhcC
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      .+.++.+||-+|+| .|..+..+++..|+ ++++++.+++.++.+++.    |..   .++..+.  .++     .+..+
T Consensus        79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~~  149 (297)
T 2o57_A           79 VLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEI-----PCEDN  149 (297)
T ss_dssp             CCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSC-----SSCTT
T ss_pred             CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc--ccC-----CCCCC
Confidence            77899999999987 57777888887788 999999999888777652    321   2222221  110     01224


Q ss_pred             CccEEEEccCC------hHHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGD------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~------~~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+..-.-      ...+..+.+.|++||++
T Consensus       150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  183 (297)
T 2o57_A          150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVM  183 (297)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             CEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEE
Confidence            78988864221      45688999999999976

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.57  E-value=0.058  Score=46.15  Aligned_cols=79  Identities=15%  Similarity=0.190  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.+++ ++++.+.+    ++.+... .+  |..+ .++....+.+..  .
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ-ESEVEALFAAVIERW  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            5688999987 8999999999999999 8887776 55544433    3334333 22  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus       105 g~id~lv~nAg~  116 (269)
T 4dmm_A          105 GRLDVLVNNAGI  116 (269)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999875

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.57  E-value=0.036  Score=47.08  Aligned_cols=79  Identities=19%  Similarity=0.298  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|..++..+...|+ +|+++++ ++++.+.+    ++.+... .+  |..+ ..++.+.+.+..  .
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   97 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVSHF   97 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999999999 8888888 66655432    2335432 22  3332 123333333221  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        98 ~~~d~vi~~Ag~  109 (274)
T 1ja9_A           98 GGLDFVMSNSGM  109 (274)
T ss_dssp             SCEEEEECCCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999998874

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.56  E-value=0.054  Score=49.35  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=67.9

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCc
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      +.+...+.++.+||-+|+|. |..+..+++ .|. ++++++.+++..+.+++.+.......-.  .+....+. +.++.|
T Consensus        99 l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~--~~~~~~l~-~~~~~f  172 (416)
T 4e2x_A           99 FLATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFFE--KATADDVR-RTEGPA  172 (416)
T ss_dssp             HHHTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCCS--HHHHHHHH-HHHCCE
T ss_pred             HHHHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeeec--hhhHhhcc-cCCCCE
Confidence            34445667889999998863 555555555 577 9999999999999999887655433221  22222222 234589


Q ss_pred             cEEEEccC------ChHHHHHHHHhhccCccc
Q 022819          265 DYSFECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      |+|+-.-.      ....++.+.+.|+++|++
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l  204 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVF  204 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHHcCCCeEE
Confidence            98886422      146688999999999976

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.55  E-value=0.052  Score=48.00  Aligned_cols=79  Identities=11%  Similarity=0.094  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhhHHHHH-----HcCCce-E--eCCCCCCc------------
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKCEKAK-----AFGVTE-F--LNPNDNNE------------  250 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~-~~~~~~~~a~-----~~g~~~-~--i~~~~~~~------------  250 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.++ +++++.+.+.     +.+... .  .|..+ ..            
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~  122 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN-VATAPVSGADGSAP  122 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-SCBCC-------CC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCC-chhccccccccccc
Confidence            4678999987 8999999999999999 899998 8887665442     234322 2  24332 12            


Q ss_pred             -----hHHHHHHHHh--cCCccEEEEccCC
Q 022819          251 -----PVQQVIKRIT--DGGADYSFECIGD  273 (291)
Q Consensus       251 -----~~~~~~~~~~--~g~~d~vld~~g~  273 (291)
                           ++.+.+.+..  .+++|+++.+.|.
T Consensus       123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~  152 (328)
T 2qhx_A          123 VTLFTRCAELVAACYTHWGRCDVLVNNASS  152 (328)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             cccHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence                 3434333322  2479999999874

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.53  E-value=0.037  Score=46.40  Aligned_cols=76  Identities=18%  Similarity=0.303  Sum_probs=48.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC-CchHHHHHH---HHhc-CCcc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN-NEPVQQVIK---RITD-GGAD  265 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~-~~~~~~~~~---~~~~-g~~d  265 (291)
                      .+++++||.|+ |++|.++++.+...|+ +|+.+++++++.+     +....+..+-. .++..+.+.   +..+ +++|
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            45788999987 8999999999999999 8999988776532     11122211111 122222222   2222 5799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        79 ~lv~~Ag~   86 (241)
T 1dhr_A           79 AILCVAGG   86 (241)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcccc
Confidence            99999883

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.53  E-value=0.027  Score=49.82  Aligned_cols=90  Identities=18%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----hhHHHHH---HcCCceE-eCCCCCCchHHHHHHHHhcCCc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----EKCEKAK---AFGVTEF-LNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~----~~~~~a~---~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      ..+|||+|+ |.+|..++..+...|. +|+++++++    ++.+.++   ..++..+ .|..+ ...+.+.+++   .++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d-~~~l~~~~~~---~~~   84 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE-QEAMEKILKE---HEI   84 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTC-HHHHHHHHHH---TTC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCC-HHHHHHHHhh---CCC
Confidence            357999988 9999999999999997 888888866    4544333   3354432 23322 1223333322   279


Q ss_pred             cEEEEccCCh--HHHHHHHHhhccCc
Q 022819          265 DYSFECIGDT--GMITTALQSCCDVR  288 (291)
Q Consensus       265 d~vld~~g~~--~~~~~~~~~l~~~G  288 (291)
                      |+||.+.+..  .....+++.++..|
T Consensus        85 d~Vi~~a~~~n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           85 DIVVSTVGGESILDQIALVKAMKAVG  110 (346)
T ss_dssp             CEEEECCCGGGGGGHHHHHHHHHHHC
T ss_pred             CEEEECCchhhHHHHHHHHHHHHHcC
Confidence            9999998852  22344555555444

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.52  E-value=0.02  Score=51.63  Aligned_cols=83  Identities=17%  Similarity=0.239  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCe-EEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASR-IIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~-vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      .+++|.|+|.|.+|...++.++.+|+ + |++.+++..+.+.++++|+..+       .++.+.+.     ..|+|+-++
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvV~l~~  229 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV-------ENIEELVA-----QADIVTVNA  229 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC-------SSHHHHHH-----TCSEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec-------CCHHHHHh-----cCCEEEECC
Confidence            67899999999999999999999999 6 9999987766666777764321       12222222     367777776


Q ss_pred             CCh----HHH-HHHHHhhccCc
Q 022819          272 GDT----GMI-TTALQSCCDVR  288 (291)
Q Consensus       272 g~~----~~~-~~~~~~l~~~G  288 (291)
                      ...    ..+ ...+..|++++
T Consensus       230 P~t~~t~~li~~~~l~~mk~ga  251 (364)
T 2j6i_A          230 PLHAGTKGLINKELLSKFKKGA  251 (364)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTE
T ss_pred             CCChHHHHHhCHHHHhhCCCCC
Confidence            642    112 23455666554

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.52  E-value=0.073  Score=47.51  Aligned_cols=70  Identities=17%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      .+|.|+|.|.+|.+.+..++..|. +|++.++++++.+.++++|+...       .+..+.+.+. ....|+||-++..
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~~-------~~~~e~~~~a-~~~aDlVilavP~   78 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDVS-------ADLEATLQRA-AAEDALIVLAVPM   78 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCEE-------SCHHHHHHHH-HHTTCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeee-------CCHHHHHHhc-ccCCCEEEEeCCH
Confidence            578999999999999999999998 89999999999999998887422       1222222221 0145777777764

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=95.52  E-value=0.055  Score=49.63  Aligned_cols=86  Identities=22%  Similarity=0.218  Sum_probs=54.2

Q ss_pred             hhcCC-CCCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCChhh----------------HHHHHHcCCce-EeCCC
Q 022819          187 NVADI-SKGSTVVIFGL-GTVGLSVAQGAKA-RGASRIIGVDTNPEK----------------CEKAKAFGVTE-FLNPN  246 (291)
Q Consensus       187 ~~~~~-~~~~~vlV~G~-g~~G~~~i~~a~~-~g~~~vi~~~~~~~~----------------~~~a~~~g~~~-~i~~~  246 (291)
                      ....+ +.++++||+|+ +++|++++..+.. .|+ +|+.++++.+.                .+.+++.|... .+..+
T Consensus        53 ~~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~D  131 (422)
T 3s8m_A           53 ARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGD  131 (422)
T ss_dssp             HTCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             hccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEec
Confidence            33455 46788899987 7999999888888 999 88888775432                13445666543 23222


Q ss_pred             CCCch----HHHHHHHHhcCCccEEEEccCC
Q 022819          247 DNNEP----VQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       247 ~~~~~----~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      -.+.+    +.+.+.+..+|++|+++++.|.
T Consensus       132 vtd~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          132 AFSDAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             TTSHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            11122    2333333332689999998875

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.51  E-value=0.025  Score=48.57  Aligned_cols=71  Identities=17%  Similarity=0.061  Sum_probs=48.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      +|||+|+ |.+|..+++.+... |. +|+++.++.++...+...++..+ .|..+  .   +.+.+... ++|+||.+.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d--~---~~l~~~~~-~~d~vi~~a~   74 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN--Q---ESMVEAFK-GMDTVVFIPS   74 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC--H---HHHHHHTT-TCSEEEECCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC--H---HHHHHHHh-CCCEEEEeCC
Confidence            5899987 99999999988877 77 89999898877554433344322 23322  2   23444332 7899999987


Q ss_pred             C
Q 022819          273 D  273 (291)
Q Consensus       273 ~  273 (291)
                      .
T Consensus        75 ~   75 (289)
T 3e48_A           75 I   75 (289)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.49  E-value=0.041  Score=47.05  Aligned_cols=79  Identities=19%  Similarity=0.266  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHH----HHHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEK----AKAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~----a~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+++ ++++.+.    +++.+... .+  |..+ .++..+.+.+..  .
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ-VPEIVKLFDQAVAHF   94 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            5788999987 8999999999999999 7877654 4444332    23345433 22  3322 133333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        95 g~id~lvnnAg~  106 (270)
T 3is3_A           95 GHLDIAVSNSGV  106 (270)
T ss_dssp             SCCCEEECCCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999998884

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.49  E-value=0.061  Score=46.44  Aligned_cols=43  Identities=30%  Similarity=0.453  Sum_probs=37.6

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +|.|+|.|.+|...++.+...|. +|+++++++++.+.+.+.|+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   45 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGA   45 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTC
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            58889999999999988888898 89999999999888877664

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.47  E-value=0.051  Score=47.91  Aligned_cols=93  Identities=14%  Similarity=0.049  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC--------ce-EeCCCCCCchHHHHHHHHhcC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--------TE-FLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~--------~~-~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      .++++||++|+| .|..+..+++..+..+|++++.+++-.+.+++.-.        +. -+..    .+..+.+.. ..+
T Consensus       107 ~~~~~VLdIG~G-~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~----~D~~~~l~~-~~~  180 (314)
T 2b2c_A          107 PDPKRVLIIGGG-DGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC----GDGFEFLKN-HKN  180 (314)
T ss_dssp             SSCCEEEEESCT-TSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC----SCHHHHHHH-CTT
T ss_pred             CCCCEEEEEcCC-cCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEE----ChHHHHHHh-cCC
Confidence            456899999876 46666677776554599999999999998876311        11 1111    233334433 334


Q ss_pred             CccEEEEccCC----------hHHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+-....          ...++.+.+.|+++|.+
T Consensus       181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~l  218 (314)
T 2b2c_A          181 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGIL  218 (314)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEEEEE
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEE
Confidence            89988753311          46788899999999975

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.46  E-value=0.031  Score=46.68  Aligned_cols=73  Identities=19%  Similarity=0.333  Sum_probs=47.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC-chHHHHHH---HHhc-CCccEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN-EPVQQVIK---RITD-GGADYS  267 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~-~~~~~~~~---~~~~-g~~d~v  267 (291)
                      ++++||.|+ |++|.++++.+...|+ +|+.+++++++.+     +....+..+-.+ ++..+.+.   +..+ +++|++
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~l   76 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   76 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence            568999987 8999999999999999 9999988876532     111222222111 22222222   2222 589999


Q ss_pred             EEccC
Q 022819          268 FECIG  272 (291)
Q Consensus       268 ld~~g  272 (291)
                      +++.|
T Consensus        77 v~~Ag   81 (236)
T 1ooe_A           77 FCVAG   81 (236)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99988

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.45  E-value=0.025  Score=49.63  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhH--HHHHHcCC---ceEeCCCCCCchHHHHHHHHhcC-CccE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC--EKAKAFGV---TEFLNPNDNNEPVQQVIKRITDG-GADY  266 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~--~~a~~~g~---~~~i~~~~~~~~~~~~~~~~~~g-~~d~  266 (291)
                      +.+|||+|+ |.+|..+++.+...|. +|+++++++++.  +.++.++.   ...+..+-.+.+   .+.+...+ .+|+
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d~   78 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFS---NIIRTIEKVQPDE   78 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHH---HHHHHHHHHCCSE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCCCCHH---HHHHHHHhcCCCE
Confidence            578999987 9999999998888998 999998876543  23344421   122222211122   23333223 6899


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ||.+.+.
T Consensus        79 vih~A~~   85 (345)
T 2z1m_A           79 VYNLAAQ   85 (345)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.44  E-value=0.057  Score=45.79  Aligned_cols=81  Identities=16%  Similarity=0.275  Sum_probs=52.6

Q ss_pred             CCCCCEEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCceEe--CCCCCCchHHHHHHHHh-
Q 022819          191 ISKGSTVVIFG-L--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTEFL--NPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       191 ~~~~~~vlV~G-~--g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~~i--~~~~~~~~~~~~~~~~~-  260 (291)
                      ..+++++||.| +  +++|.++++.+...|+ +|+.+++++...+.++    +.+....+  |..+ ..+....+.+.. 
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   88 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVAD-DAQIDALFASLKT   88 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCC-HHHHHHHHHHHHH
Confidence            45788999997 3  6999999999999999 8999988765444333    33432333  3332 123333333322 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .+++|+++.+.|.
T Consensus        89 ~~g~id~lv~nAg~  102 (271)
T 3ek2_A           89 HWDSLDGLVHSIGF  102 (271)
T ss_dssp             HCSCEEEEEECCCC
T ss_pred             HcCCCCEEEECCcc
Confidence             2479999999874

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.44  E-value=0.058  Score=45.54  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=50.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhc--CCccEEEEc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD--GGADYSFEC  270 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~--g~~d~vld~  270 (291)
                      ++++||.|+ |++|.++++.+...|+ +|+++++++++.+.     ....++..+ ..+....+.+...  +.+|+++.+
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~d-~~~v~~~~~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDSG-EEEIKSVIEKINSKSIKVDTFVCA   94 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCSS-HHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeCC-HHHHHHHHHHHHHHcCCCCEEEEC
Confidence            578999987 8999999999999999 89999988765321     112233322 2344444444432  378999999


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .|.
T Consensus        95 Ag~   97 (251)
T 3orf_A           95 AGG   97 (251)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            883

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.44  E-value=0.022  Score=47.92  Aligned_cols=93  Identities=14%  Similarity=0.100  Sum_probs=64.8

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHhc
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~---~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ..+.++.+||-+|+| .|..+..+++..+. ++++++.+++.++.+++    .|..   .++..+.  .++     .+..
T Consensus        42 ~~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~  112 (257)
T 3f4k_A           42 NELTDDAKIADIGCG-TGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM--DNL-----PFQN  112 (257)
T ss_dssp             CCCCTTCEEEEETCT-TSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----SSCT
T ss_pred             hcCCCCCeEEEeCCC-CCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh--hhC-----CCCC
Confidence            467888999999987 48888899998887 99999999998887755    3432   1222221  111     0112


Q ss_pred             CCccEEEE-----ccCChHHHHHHHHhhccCccc
Q 022819          262 GGADYSFE-----CIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld-----~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+|+|+-     ..+....+..+.+.|++||++
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l  146 (257)
T 3f4k_A          113 EELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFI  146 (257)
T ss_dssp             TCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEE
T ss_pred             CCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEE
Confidence            47998864     233356788999999999976

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.43  E-value=0.091  Score=46.27  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----hhHHHHHHc------CCceEeCCCCCCchHHHHHHHHhc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----EKCEKAKAF------GVTEFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~----~~~~~a~~~------g~~~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      .+.+|||+|+ |.+|..++..+...|. +|++++++.    +..+.++..      .-..++..+-.+.   +.+.++..
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~   99 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDL---TTCEQVMK   99 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCH---HHHHHHTT
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCH---HHHHHHhc
Confidence            3578999987 9999999999999998 999998854    333333332      1122332222112   23444333


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                       ++|+||.+.+.
T Consensus       100 -~~d~Vih~A~~  110 (351)
T 3ruf_A          100 -GVDHVLHQAAL  110 (351)
T ss_dssp             -TCSEEEECCCC
T ss_pred             -CCCEEEECCcc
Confidence             79999999884

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=95.43  E-value=0.041  Score=47.14  Aligned_cols=76  Identities=18%  Similarity=0.318  Sum_probs=50.0

Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          191 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       191 ~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      ..+++++||.|+ +++|.++++.+...|+ +|+.+++++++..     +....  .|..+ .++..+.+.+..  .+++|
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD   83 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDV-----NVSDHFKIDVTN-EEEVKEAVEKTTKKYGRID   83 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CT-----TSSEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhcc-----CceeEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            457889999987 8999999999999999 8999988766541     11122  34332 123333333322  24799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++.+.|.
T Consensus        84 ~lv~nAg~   91 (269)
T 3vtz_A           84 ILVNNAGI   91 (269)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999884

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.42  E-value=0.049  Score=48.85  Aligned_cols=46  Identities=35%  Similarity=0.468  Sum_probs=38.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      .+++|.|+|.|.+|..+++.++.+|+ +|++.+++. +.+.+.+.|+.
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~  204 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFA  204 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCce
Confidence            47799999999999999999999999 999998765 44555666653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.42  E-value=0.093  Score=45.88  Aligned_cols=74  Identities=19%  Similarity=0.352  Sum_probs=51.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|...   .    .+..+.+.     .+|+||.++..+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~----~~~~~~~~-----~~DvVi~av~~~   97 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGARL---G----RTPAEVVS-----TCDITFACVSDP   97 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCEE---C----SCHHHHHH-----HCSEEEECCSSH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCEE---c----CCHHHHHh-----cCCEEEEeCCCH
Confidence            579999999999999988888898 8999999998888777766431   1    11222222     257777777754


Q ss_pred             HHHHHHH
Q 022819          275 GMITTAL  281 (291)
Q Consensus       275 ~~~~~~~  281 (291)
                      ..+...+
T Consensus        98 ~~~~~v~  104 (316)
T 2uyy_A           98 KAAKDLV  104 (316)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.41  E-value=0.077  Score=47.09  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=51.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHH-HcCC--ceEe--CCCCCCchHHHHHHHHhcCCc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAK-AFGV--TEFL--NPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~-~~g~--~~~i--~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      -++++|||+|+ |.+|..+++.+... |..+|+++++++++.+.+. ++..  ..++  |..+  .   +.+.+... ++
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d--~---~~l~~~~~-~~   92 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD--L---ERLNYALE-GV   92 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC--H---HHHHHHTT-TC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC--H---HHHHHHHh-cC
Confidence            35689999987 99999999888888 8668999999887766543 2321  1222  3322  2   23444332 68


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+||.+.+.
T Consensus        93 D~Vih~Aa~  101 (344)
T 2gn4_A           93 DICIHAAAL  101 (344)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999875

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.41  E-value=0.11  Score=44.67  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=47.6

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh------hhHHHHH---HcCCceE-eCCCCCCchHHHHHHHHhcC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP------EKCEKAK---AFGVTEF-LNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~------~~~~~a~---~~g~~~~-i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ..+|+|+|+ |.+|..++..+...|. +|++++++.      ++.+.++   ..++..+ .|..+  .   +.+.+... 
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d--~---~~l~~~~~-   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDD--H---ASLVEAVK-   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTC--H---HHHHHHHH-
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCC--H---HHHHHHHc-
Confidence            467999987 9999999999999997 888888863      3433333   2344322 23322  2   22333222 


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+||.+.+.
T Consensus        77 ~~d~vi~~a~~   87 (308)
T 1qyc_A           77 NVDVVISTVGS   87 (308)
T ss_dssp             TCSEEEECCCG
T ss_pred             CCCEEEECCcc
Confidence            58999999875

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.41  E-value=0.028  Score=47.72  Aligned_cols=74  Identities=22%  Similarity=0.250  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      .++++||.|+ |++|.++++.+...|+ +|+.+++++++.+.     +.. ..|..+ .+++.+.+.+..  .+.+|+++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~Dl~d-~~~v~~~~~~~~~~~g~iD~lv   92 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG-----FLAVKCDITD-TEQVEQAYKEIEETHGPVEVLI   92 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----SEEEECCTTS-HHHHHHHHHHHHHHTCSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc-----ceEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence            3678999987 8999999999999999 89999887665322     111 223332 123333333321  24789999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus        93 ~nAg~   97 (253)
T 2nm0_A           93 ANAGV   97 (253)
T ss_dssp             EECSC
T ss_pred             ECCCC
Confidence            98874

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.41  E-value=0.026  Score=50.61  Aligned_cols=47  Identities=26%  Similarity=0.289  Sum_probs=40.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      .+++|.|+|.|.+|..+++.++.+|+ +|++.+++....+.++++|+.
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~  209 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAK  209 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCE
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCe
Confidence            57899999999999999999999999 899999877666666666653

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.39  E-value=0.023  Score=45.83  Aligned_cols=73  Identities=15%  Similarity=0.225  Sum_probs=47.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      .+|+|+|+ |.+|..+++.+...|. +|+++++++++.+.....+.. ++..+-.+.   +.+.+... ++|+||.+.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~~D~~~~---~~~~~~~~-~~d~vi~~a~~   77 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAH-VVVGDVLQA---ADVDKTVA-GQDAVIVLLGT   77 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSE-EEESCTTSH---HHHHHHHT-TCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCceE-EEEecCCCH---HHHHHHHc-CCCEEEECccC
Confidence            68999987 9999999999999998 999999987764322111222 222221112   22333322 58999999885

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.39  E-value=0.1  Score=47.20  Aligned_cols=84  Identities=15%  Similarity=0.218  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC----hhh---------HHHHHHcCCceEeCCCCCCchHHHHHHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN----PEK---------CEKAKAFGVTEFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~----~~~---------~~~a~~~g~~~~i~~~~~~~~~~~~~~~~  259 (291)
                      ++.+|+|+|+|..|..+++++..+|+++|+.++++    .+|         ..++++...  ..    ...++.+.++  
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~--~~----~~~~L~eav~--  262 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP--ER----LSGDLETALE--  262 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT--TC----CCSCHHHHHT--
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc--cC----chhhHHHHHc--
Confidence            67889999999999999999999999899999987    544         344444321  00    1134444443  


Q ss_pred             hcCCccEEEEccCChHHHHHHHHhhccC
Q 022819          260 TDGGADYSFECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       260 ~~g~~d~vld~~g~~~~~~~~~~~l~~~  287 (291)
                         ++|++|-+++..-.-++.++.|+++
T Consensus       263 ---~ADVlIG~Sap~l~t~emVk~Ma~~  287 (388)
T 1vl6_A          263 ---GADFFIGVSRGNILKPEWIKKMSRK  287 (388)
T ss_dssp             ---TCSEEEECSCSSCSCHHHHTTSCSS
T ss_pred             ---cCCEEEEeCCCCccCHHHHHhcCCC
Confidence               3789988877423334455555543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.39  E-value=0.05  Score=48.69  Aligned_cols=48  Identities=27%  Similarity=0.491  Sum_probs=40.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHH-HcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAK-ARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~-~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      -.+.+|.|+|.|.+|...++.++ ..|. +|++.+++.++.+.++++|+.
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~  209 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAE  209 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCE
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcE
Confidence            35789999999999999999999 9999 999999887766666656643

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.086  Score=49.10  Aligned_cols=74  Identities=18%  Similarity=0.232  Sum_probs=50.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHH-cCCce-EeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKA-FGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~-~g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      +.+|+|+|+|.+|.+++..+... +. +|++++++.++.+.+.+ .+... .+|..+  .+   .+.+... ++|+|+++
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d--~~---~l~~~l~-~~DvVIn~   95 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD--DS---ALDKVLA-DNDVVISL   95 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC--HH---HHHHHHH-TSSEEEEC
T ss_pred             CCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC--HH---HHHHHHc-CCCEEEEC
Confidence            46899999999999999888877 66 88899999888765543 23322 233322  21   2222221 68999999


Q ss_pred             cCCh
Q 022819          271 IGDT  274 (291)
Q Consensus       271 ~g~~  274 (291)
                      ++..
T Consensus        96 tp~~   99 (467)
T 2axq_A           96 IPYT   99 (467)
T ss_dssp             SCGG
T ss_pred             Cchh
Confidence            9864

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=95.37  E-value=0.059  Score=44.89  Aligned_cols=77  Identities=22%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH----HHcCCce-E-e--CCCCCCchHHHHHHHHh--cC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-F-L--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~~~~a----~~~g~~~-~-i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++||+|+ |++|..+++.+...|+ +|+++ ++++++.+.+    ++.+... . +  |..+ .++..+.+.+..  .+
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE-AEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC-HHHHHHHHHHHHHhcC
Confidence            57899987 9999999999999999 88887 7887765543    2234322 2 2  3322 122323333221  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        80 ~~d~li~~Ag~   90 (245)
T 2ph3_A           80 GLDTLVNNAGI   90 (245)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.37  E-value=0.04  Score=48.26  Aligned_cols=94  Identities=16%  Similarity=0.037  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC---------Cce-EeCCCCCCchHHHHHHHHh
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG---------VTE-FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g---------~~~-~i~~~~~~~~~~~~~~~~~  260 (291)
                      ..++++||++|+| .|..+..+++..+..++++++.+++-.+.+++.-         ... ++.     .+..+.+.+..
T Consensus        93 ~~~~~~VLdiG~G-~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~-----~D~~~~~~~~~  166 (304)
T 3bwc_A           93 HPKPERVLIIGGG-DGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV-----GDGLAFVRQTP  166 (304)
T ss_dssp             SSSCCEEEEEECT-TSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHHHSSC
T ss_pred             CCCCCeEEEEcCC-CCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE-----CcHHHHHHhcc
Confidence            3567899999876 3566667777655559999999999888887632         011 221     23333333212


Q ss_pred             cCCccEEEEccCC----------hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      .+.+|+|+-....          ...++.+.+.|+++|.+
T Consensus       167 ~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l  206 (304)
T 3bwc_A          167 DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGIC  206 (304)
T ss_dssp             TTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEE
T ss_pred             CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEE
Confidence            3489988753321          36688899999999976

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=95.36  E-value=0.036  Score=47.50  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh--cCCccEEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT--DGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~--~g~~d~vld  269 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++. ..+.+  ....|..+ .++....+.+..  .|++|++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~--~~~~Dv~~-~~~v~~~~~~~~~~~G~iDilVn   84 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPEG-LPEEL--FVEADLTT-KEGCAIVAEATRQRLGGVDVIVH   84 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCTT-SCTTT--EEECCTTS-HHHHHHHHHHHHHHTSSCSEEEE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchhC-CCcEE--EEEcCCCC-HHHHHHHHHHHHHHcCCCCEEEE
Confidence            6899999987 8999999999999999 999998865431 11111  11223332 123333333322  257999999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        85 nAG~   88 (261)
T 4h15_A           85 MLGG   88 (261)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8773

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.36  E-value=0.027  Score=48.02  Aligned_cols=90  Identities=12%  Similarity=0.001  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCC---------------------ce-EeCCCC
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGV---------------------TE-FLNPND  247 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~---------------------~~-~i~~~~  247 (291)
                      ..++.+||.+|+| .|..+..+|+. |+ +|+++|.+++-++.+++ .+.                     .. ++.-+.
T Consensus        66 ~~~~~~vLD~GCG-~G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           66 GQSGLRVFFPLCG-KAIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             TCCSCEEEETTCT-TCTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             CCCCCeEEEeCCC-CcHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            4678899999986 46666777764 88 99999999999998864 321                     11 111111


Q ss_pred             CCchHHHHHHHHhc-CCccEEEEccC-----C---hHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITD-GGADYSFECIG-----D---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~-g~~d~vld~~g-----~---~~~~~~~~~~l~~~G~i  290 (291)
                        .++     .... +.||+|++...     .   ...++.+.++|++||++
T Consensus       143 --~~l-----~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l  187 (252)
T 2gb4_A          143 --FDL-----PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQY  187 (252)
T ss_dssp             --TTG-----GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             --ccC-----CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEE
Confidence              111     1112 47999997422     1   23678888999999985

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=95.35  E-value=0.067  Score=44.64  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=50.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCC------eEEEEcCChhhHHHHH-Hc---CCce-Ee--CCCCCCchHHHHHHHH
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGAS------RIIGVDTNPEKCEKAK-AF---GVTE-FL--NPNDNNEPVQQVIKRI  259 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~------~vi~~~~~~~~~~~a~-~~---g~~~-~i--~~~~~~~~~~~~~~~~  259 (291)
                      ++++||+|+ |++|..++..+...|+.      +|+.+++++++.+.+. ++   +... .+  |..+ ...+...+.+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC-HHHHHHHHHHH
Confidence            567899987 99999999888888874      7888888887765443 22   3322 22  3322 12233333332


Q ss_pred             h--cCCccEEEEccCC
Q 022819          260 T--DGGADYSFECIGD  273 (291)
Q Consensus       260 ~--~g~~d~vld~~g~  273 (291)
                      .  .+++|+++.+.|.
T Consensus        81 ~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHTSCCSEEEECCCC
T ss_pred             HHhCCCCCEEEEcCCc
Confidence            2  2479999998873

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.35  E-value=0.045  Score=45.29  Aligned_cols=95  Identities=15%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHhcCC
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~-~~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      ..++++++||-+|+|..|..++.+++..+. +|++++.+++.++.+++    .+.. .++..+.  ..    +..+..+.
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~--~~----~~~~~~~~  123 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG--GI----IKGVVEGT  123 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS--CS----STTTCCSC
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc--hh----hhhcccCc
Confidence            345789999999888667777888887666 99999999998887764    3431 2332221  00    11112247


Q ss_pred             ccEEEEccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          264 ADYSFECIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      +|+|+-...-                         ...++.+.+.|+++|++
T Consensus       124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  175 (230)
T 3evz_A          124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKV  175 (230)
T ss_dssp             EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEE
T ss_pred             eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEE
Confidence            9988843110                         45688888899999975

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=95.34  E-value=0.037  Score=47.36  Aligned_cols=89  Identities=13%  Similarity=0.208  Sum_probs=60.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHc---CCCeEEEEcCChhhHHHHHHc----CCce---EeCCCCCCchHHHHHHHHh
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKAR---GASRIIGVDTNPEKCEKAKAF----GVTE---FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~---g~~~vi~~~~~~~~~~~a~~~----g~~~---~i~~~~~~~~~~~~~~~~~  260 (291)
                      ++++.+||-+|+| .|..+..+++..   |+ +|+++|.+++-++.+++.    +...   ++.-+-         .++.
T Consensus        68 ~~~~~~vLDlGcG-tG~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~---------~~~~  136 (261)
T 4gek_A           68 VQPGTQVYDLGCS-LGAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI---------RDIA  136 (261)
T ss_dssp             CCTTCEEEEETCT-TTHHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT---------TTCC
T ss_pred             CCCCCEEEEEeCC-CCHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc---------cccc
Confidence            6899999999987 577777788764   66 899999999988888652    3221   222111         1122


Q ss_pred             cCCccEEEEccCC--------hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                      ...+|+|+-...-        ...++.+.+.|+|||++
T Consensus       137 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~l  174 (261)
T 4gek_A          137 IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL  174 (261)
T ss_dssp             CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEE
Confidence            2367877653221        23578889999999975

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.33  E-value=0.076  Score=45.05  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.+ .+++++.+.+    ++.+... .+  |..+ .++..+.+.+..  .
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN-AAEVEAAISAAADKF   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence            5789999987 8999999999999999 78777 5555544332    3334322 22  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        85 g~id~lv~nAg~   96 (259)
T 3edm_A           85 GEIHGLVHVAGG   96 (259)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999998874

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.33  E-value=0.012  Score=49.81  Aligned_cols=75  Identities=17%  Similarity=0.250  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh--cCCccEEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT--DGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~--~g~~d~vld  269 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+++++++++.+.+.  +  ...|..+ .++..+.+.+..  .+++|++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~-~~~~~~~~~~~~~~~g~id~lv~   87 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD-SDAVDRAFTAVEEHQGPVEVLVS   87 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC-HHHHHHHHHHHHHHHSSCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC-HHHHHHHHHHHHHHcCCCCEEEE
Confidence            4678999987 8999999999999999 8999988766543221  1  2334432 122333333221  247899999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        88 ~Ag~   91 (247)
T 1uzm_A           88 NAGL   91 (247)
T ss_dssp             ECSC
T ss_pred             CCCC
Confidence            9884

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.32  E-value=0.052  Score=45.68  Aligned_cols=67  Identities=27%  Similarity=0.378  Sum_probs=44.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh---cCCccEEEEc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT---DGGADYSFEC  270 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~---~g~~d~vld~  270 (291)
                      +++||+|+ |++|.++++.+...|+ +|+.+++++++.+.      .  +..+   -.-.+.++++.   .+++|+++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------~--~~~D---l~~~~~v~~~~~~~~~~id~lv~~   69 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------D--LSTA---EGRKQAIADVLAKCSKGMDGLVLC   69 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------C--TTSH---HHHHHHHHHHHTTCTTCCSEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------c--cccC---CCCHHHHHHHHHHhCCCCCEEEEC
Confidence            47899987 9999999999999999 89999887654321      0  1000   11112233322   2478999999


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .|.
T Consensus        70 Ag~   72 (257)
T 1fjh_A           70 AGL   72 (257)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            885

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=95.31  E-value=0.068  Score=44.54  Aligned_cols=78  Identities=18%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEE-EcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIG-VDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~-~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      ++++||.|+ |++|..+++.+...|+ +|++ ..+++++.+.+    ++.+... .  .|..+ .+++.+.+.+..  .+
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   78 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWG   78 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence            467899987 9999999999999999 7877 47777665433    2234322 2  23322 123333333321  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        79 ~id~li~~Ag~   89 (244)
T 1edo_A           79 TIDVVVNNAGI   89 (244)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.29  E-value=0.048  Score=48.23  Aligned_cols=45  Identities=22%  Similarity=0.386  Sum_probs=37.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHHHHcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT-NPEKCEKAKAFGV  239 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a~~~g~  239 (291)
                      .+.+|.|+|.|.+|...++.++.+|. +|++.++ +.++ +.++++|+
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~  190 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQA  190 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCc
Confidence            57789999999999999999999999 9999998 6665 34555665

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.28  E-value=0.092  Score=46.20  Aligned_cols=45  Identities=38%  Similarity=0.618  Sum_probs=40.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHHcCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~-~vi~~~~~~~~~~~a~~~g~  239 (291)
                      .+|.|+|.|.+|...++.++..|.. +|+++++++++.+.++++|.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~   79 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   79 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            6799999999999999999988863 79999999999999988876

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.28  E-value=0.034  Score=47.63  Aligned_cols=79  Identities=28%  Similarity=0.329  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|+ |++|..++..+...|+ +|+.+++++++.+.+    ++.+... .+  |..+ .+++.+.+.+..  .+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g  110 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD-PKSVEETISQQEKDFG  110 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC-HHHHHHHHHHHHHHhC
Confidence            4678999987 8999999988888899 899998877654433    2234332 22  3322 123333333321  14


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus       111 ~id~li~~Ag~  121 (279)
T 3ctm_A          111 TIDVFVANAGV  121 (279)
T ss_dssp             CCSEEEECGGG
T ss_pred             CCCEEEECCcc
Confidence            79999998873

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=95.27  E-value=0.056  Score=44.18  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=62.5

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHH-HHhcC-CccE
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIK-RITDG-GADY  266 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~-~~~~g-~~d~  266 (291)
                      ....++.+||-+|+| .|..+..+++. |. ++++++.+++.++.+++.+...++..+     +..... ....+ .+|+
T Consensus        48 ~~~~~~~~vLdiG~G-~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~fD~  119 (227)
T 3e8s_A           48 ILGRQPERVLDLGCG-EGWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHLAS-----YAQLAEAKVPVGKDYDL  119 (227)
T ss_dssp             HHHTCCSEEEEETCT-TCHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEECC-----HHHHHTTCSCCCCCEEE
T ss_pred             hhcCCCCEEEEeCCC-CCHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccchhh-----HHhhcccccccCCCccE
Confidence            344567899999886 35666666666 77 999999999999999887433333221     111111 11223 5999


Q ss_pred             EEEccC-----ChHHHHHHHHhhccCccc
Q 022819          267 SFECIG-----DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~g-----~~~~~~~~~~~l~~~G~i  290 (291)
                      |+....     ....+..+.+.|+++|++
T Consensus       120 v~~~~~l~~~~~~~~l~~~~~~L~pgG~l  148 (227)
T 3e8s_A          120 ICANFALLHQDIIELLSAMRTLLVPGGAL  148 (227)
T ss_dssp             EEEESCCCSSCCHHHHHHHHHTEEEEEEE
T ss_pred             EEECchhhhhhHHHHHHHHHHHhCCCeEE
Confidence            886432     246789999999999976

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.26  E-value=0.067  Score=43.20  Aligned_cols=62  Identities=16%  Similarity=0.387  Sum_probs=43.6

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      ++||+|+ |.+|..+++.+. .|. +|++++++++          ....|..+ .+.+.+.+.++  +.+|+++.+.|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~-~~~~~~~~~~~--~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN-IDSIKKMYEQV--GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC-HHHHHHHHHHH--CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC-HHHHHHHHHHh--CCCCEEEECCC
Confidence            7999987 999999999888 898 8999988754          12234332 12333334443  47899999887

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.25  E-value=0.089  Score=45.15  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCh--hhHHHHHH-cCCceEe--CCCCCCchHHHHHHHHh--c
Q 022819          192 SKGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNP--EKCEKAKA-FGVTEFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       192 ~~~~~vlV~G~-g--~~G~~~i~~a~~~g~~~vi~~~~~~--~~~~~a~~-~g~~~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      -+++++||+|+ |  ++|.++++.+...|+ +|+.++++.  +..+.+.+ .+....+  |..+ .++..+.+.+..  .
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVIS-DQEIKDLFVELGKVW  101 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTC-HHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCC-HHHHHHHHHHHHHHc
Confidence            35688999985 4  499999999999999 899998876  45554433 3322333  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus       102 g~id~li~nAg~  113 (280)
T 3nrc_A          102 DGLDAIVHSIAF  113 (280)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999884

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.25  E-value=0.12  Score=44.08  Aligned_cols=79  Identities=15%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChh---hHHHHH-HcCCceEe--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKAK-AFGVTEFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~~---~~~~a~-~~g~~~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+   |++|.++++.+...|+ +|+.++++++   ..+.++ +.+....+  |..+ .++..+.+.+..  .
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~   82 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK-EEHFKSLYNSVKKDL   82 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            4688999975   6999999999999999 8999988765   333332 23422232  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        83 g~id~lv~nAg~   94 (275)
T 2pd4_A           83 GSLDFIVHSVAF   94 (275)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999874

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.25  E-value=0.03  Score=46.40  Aligned_cols=64  Identities=17%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      +++++||.|+ +++|.++++.+...|+ +|+.++++++             .|..+ .++..+.++++  +++|+++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~-~~~v~~~~~~~--g~id~lv~nA   67 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD-EKSVYHYFETI--GAFDHLIVTA   67 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC-HHHHHHHHHHH--CSEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC-HHHHHHHHHHh--CCCCEEEECC
Confidence            4678999987 8999999999888899 8999987654             23322 13333344443  5789999888


Q ss_pred             CC
Q 022819          272 GD  273 (291)
Q Consensus       272 g~  273 (291)
                      |.
T Consensus        68 g~   69 (223)
T 3uce_A           68 GS   69 (223)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.24  E-value=0.089  Score=44.95  Aligned_cols=80  Identities=16%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      .+++++||+|+ +++|.++++.+...|+ +|+.+ .+++++.+.+    ++.+... .+  |..+ .++..+.+.+..  
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD-PAAVRRLFATAEEA  102 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            35789999987 8999999999888999 77776 5555444433    3344333 22  3332 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++++.|.
T Consensus       103 ~g~iD~lvnnAG~  115 (267)
T 3u5t_A          103 FGGVDVLVNNAGI  115 (267)
T ss_dssp             HSCEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2479999999884

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.24  E-value=0.033  Score=47.61  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=35.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      ++ +++|+|+|++|.+++..+..+|+++|+++.++.++.+.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            45 899999999999999999999987899999988775543

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.23  E-value=0.072  Score=44.77  Aligned_cols=79  Identities=25%  Similarity=0.293  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      .++++||.|+ |++|.+++..+...|+ +|+.+++ ++++.+.+    ++.+... .+  |..+ .++..+.+.+..  .
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVAD-ADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            3578999987 8999999999999999 7877665 44544433    3344433 22  3322 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        81 g~id~lv~nAg~   92 (246)
T 3osu_A           81 GSLDVLVNNAGI   92 (246)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=95.23  E-value=0.11  Score=43.00  Aligned_cols=94  Identities=15%  Similarity=0.170  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHH-HhcCCccEE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKR-ITDGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~-~~~g~~d~v  267 (291)
                      ++.+||=+|+| .|..++.+|+...-..|++++.+++.++.+++    .|...+.-..   .+..+.+.. +..+.+|.|
T Consensus        34 ~~~~vLDiGcG-~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~---~Da~~~l~~~~~~~~~d~v  109 (218)
T 3dxy_A           34 EAPVTLEIGFG-MGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMC---HDAVEVLHKMIPDNSLRMV  109 (218)
T ss_dssp             CCCEEEEESCT-TCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEEC---SCHHHHHHHHSCTTCEEEE
T ss_pred             CCCeEEEEeee-ChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEE---CCHHHHHHHHcCCCChheE
Confidence            66788888886 57778888887643389999999998777654    3443221111   233333443 234478877


Q ss_pred             EEccCCh--------------HHHHHHHHhhccCccc
Q 022819          268 FECIGDT--------------GMITTALQSCCDVRSI  290 (291)
Q Consensus       268 ld~~g~~--------------~~~~~~~~~l~~~G~i  290 (291)
                      +-....+              ..++.+.+.|++||.+
T Consensus       110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l  146 (218)
T 3dxy_A          110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVF  146 (218)
T ss_dssp             EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEE
T ss_pred             EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEE
Confidence            7543221              4789999999999986

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.055  Score=45.78  Aligned_cols=78  Identities=17%  Similarity=0.279  Sum_probs=50.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCChhhHHHHH-HcCCce-E--eCCCCCCchHHHHHHHHh--cCCc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARG--ASRIIGVDTNPEKCEKAK-AFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g--~~~vi~~~~~~~~~~~a~-~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      ++++||+|+ +++|.++++.+...|  . +|+.+++++++.+.+. +++... .  .|..+ ..+..+.+.+..  .+++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   79 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITE-DSVLKQLVNAAVKGHGKI   79 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHhcCCc
Confidence            578899987 899999987776664  5 8888999988776554 344332 2  23332 123333333322  2489


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++++.|.
T Consensus        80 d~lvnnAg~   88 (254)
T 3kzv_A           80 DSLVANAGV   88 (254)
T ss_dssp             CEEEEECCC
T ss_pred             cEEEECCcc
Confidence            999999885

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.22  E-value=0.095  Score=45.30  Aligned_cols=75  Identities=21%  Similarity=0.307  Sum_probs=50.7

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHc----CCce-EeCCCCCCchHHHHHHHHhcCCc
Q 022819          192 SKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----GVTE-FLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G-~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~----g~~~-~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      -+++++||+| +|++|.+++..+...|+ +|+.++++.++.+.+ +++    +... ..|..+  .+   .+.+... .+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~--~~---~~~~~~~-~~  189 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD--DA---SRAEAVK-GA  189 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS--HH---HHHHHTT-TC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC--HH---HHHHHHH-hC
Confidence            3678999998 59999999999999999 799998987776543 222    2221 234322  22   2333222 48


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |++++++|.
T Consensus       190 DvlVn~ag~  198 (287)
T 1lu9_A          190 HFVFTAGAI  198 (287)
T ss_dssp             SEEEECCCT
T ss_pred             CEEEECCCc
Confidence            999999973

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.21  E-value=0.068  Score=45.66  Aligned_cols=80  Identities=20%  Similarity=0.311  Sum_probs=56.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i-~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      .+|||+|+|.+|..++..+...|. +|+++++++++.+.++..++..+. |..+  .+         ..++|+||.+.+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~~---------~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGEE--PS---------LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSSSC--CC---------CTTCCEEEECCCC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEecccc--cc---------cCCCCEEEECCCc
Confidence            579999999999999999999998 999999999888777766654332 3321  11         2378999998874


Q ss_pred             h----HHHHHHHHhhcc
Q 022819          274 T----GMITTALQSCCD  286 (291)
Q Consensus       274 ~----~~~~~~~~~l~~  286 (291)
                      .    ......++.++.
T Consensus        74 ~~~~~~~~~~l~~a~~~   90 (286)
T 3ius_A           74 DSGGDPVLAALGDQIAA   90 (286)
T ss_dssp             BTTBCHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHh
Confidence            2    223444454443

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.20  E-value=0.066  Score=47.61  Aligned_cols=45  Identities=29%  Similarity=0.464  Sum_probs=38.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      .+.+|.|+|.|.+|...++.++..|. +|++++++.++ +.++++|+
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  193 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNA  193 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCc
Confidence            56789999999999999999999999 99999988776 55555554

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.20  E-value=0.085  Score=45.00  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--  260 (291)
                      .+++++||+|+ |++|.++++.+...|+ +|+.+ .++.++.+.+    ++.+... .+  |..+ ..+....+.+..  
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN-AADIAAMFSAVDRQ  101 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHh
Confidence            45678999987 8999999999999999 77665 7777665543    2334333 22  3322 123333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus       102 ~g~id~li~nAg~  114 (272)
T 4e3z_A          102 FGRLDGLVNNAGI  114 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            1479999998874

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.20  E-value=0.047  Score=47.76  Aligned_cols=75  Identities=17%  Similarity=0.154  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-----CCc-eEe---CCCCCCchHHHHHHHHhc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-----GVT-EFL---NPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-----g~~-~~i---~~~~~~~~~~~~~~~~~~  261 (291)
                      -++.+|||+|+ |.+|..++..+...|. +|++++++.++.+.+.+.     +.. .++   |..+  .+   .+.++. 
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~---~~~~~~-   81 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK--QG---AYDEVI-   81 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS--TT---TTTTTT-
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC--hH---HHHHHH-
Confidence            45789999987 9999999999988998 999999987765544321     211 122   3322  11   122221 


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      .++|+||.+.+.
T Consensus        82 ~~~d~vih~A~~   93 (342)
T 1y1p_A           82 KGAAGVAHIASV   93 (342)
T ss_dssp             TTCSEEEECCCC
T ss_pred             cCCCEEEEeCCC
Confidence            168999998874

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=95.19  E-value=0.088  Score=44.69  Aligned_cols=79  Identities=16%  Similarity=0.269  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh---hhHHHHH-HcCCceEe--CCCCCCchHHHHHHHHhc--
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNP---EKCEKAK-AFGVTEFL--NPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~---~~~~~a~-~~g~~~~i--~~~~~~~~~~~~~~~~~~--  261 (291)
                      +++++||+|+   |++|.++++.+...|+ +|+.+++++   +..+.+. +.+....+  |..+ .++..+.+.+...  
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~   85 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE-DASIDTMFAELGKVW   85 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            4678999975   6999999999999999 899998876   2333332 23332333  3332 1333344444332  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        86 g~iD~lv~~Ag~   97 (265)
T 1qsg_A           86 PKFDGFVHSIGF   97 (265)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            378999999874

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.19  E-value=0.14  Score=44.81  Aligned_cols=45  Identities=29%  Similarity=0.372  Sum_probs=39.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   53 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGA   53 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            4579999999999999999999998 89999999999888877665

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.19  E-value=0.091  Score=45.83  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=37.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      ...++|.|+|+|.+|...++.+. .|. .|++.++++++++.+.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHH
Confidence            45688999999999998888888 999 999999999998887765

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.18  E-value=0.025  Score=45.97  Aligned_cols=91  Identities=9%  Similarity=0.058  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc----eEeCCCCCCchHHHHHHHHhcCCccE
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT----EFLNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~----~~i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      +.++.+||.+|+|. |..+..+++. |..++++++.+++.++.+++....    .++..+.  .++     .+..+.+|+
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~--~~~-----~~~~~~fD~  110 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV--RKL-----DFPSASFDV  110 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT--TSC-----CSCSSCEEE
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch--hcC-----CCCCCcccE
Confidence            47788999999874 7677777766 444899999999999988764221    1222211  111     122347999


Q ss_pred             EEEccC---------------------ChHHHHHHHHhhccCccc
Q 022819          267 SFECIG---------------------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~g---------------------~~~~~~~~~~~l~~~G~i  290 (291)
                      |+....                     ....++.+.+.|+++|++
T Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  155 (215)
T 2pxx_A          111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF  155 (215)
T ss_dssp             EEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEE
Confidence            986311                     135678888999999975

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.15  E-value=0.037  Score=50.43  Aligned_cols=47  Identities=17%  Similarity=0.162  Sum_probs=39.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      .++++.|+|.|.+|..+++.++.+|. +|++.+++.++.+.++++|+.
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~  236 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLT  236 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCce
Confidence            57899999999999999999999999 999998876665666666653

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.15  E-value=0.031  Score=46.07  Aligned_cols=72  Identities=21%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+.  ....++..+-.+.   +.+.+... ++|+||.+.|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~---~~~~~~~~-~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN--EHLKVKKADVSSL---DEVCEVCK-GADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC--TTEEEECCCTTCH---HHHHHHHT-TCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc--CceEEEEecCCCH---HHHHHHhc-CCCEEEEeCcC
Confidence            58999987 9999999999999998 9999999887653221  1112332221112   23333332 68999999886

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.14  E-value=0.15  Score=43.71  Aligned_cols=79  Identities=18%  Similarity=0.317  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChh---hHHHHH-HcCCceEe--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKAK-AFGVTEFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~~---~~~~a~-~~g~~~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      .++++||+|+   |++|.++++.+...|+ +|+.++++++   ..+.++ +.+....+  |..+ .++..+.+.+..  .
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   97 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSL-DEDIKNLKKFLEENW   97 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            4678999975   6999999999999999 8999988775   222222 23422233  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        98 g~iD~lv~~Ag~  109 (285)
T 2p91_A           98 GSLDIIVHSIAY  109 (285)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.11  E-value=0.12  Score=43.83  Aligned_cols=79  Identities=22%  Similarity=0.390  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChh---hHHHHH-HcCCceEe--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKAK-AFGVTEFL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~---g~~G~~~i~~a~~~g~~~vi~~~~~~~---~~~~a~-~~g~~~~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+   |++|.++++.+...|+ +|+.++++++   ..+.+. +.+....+  |..+ .+++.+.+.+..  .
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~   84 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ-DEELDALFAGVKEAF   84 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            4678999975   6999999998888899 8999988775   233222 23432333  3332 122333333221  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++++.|.
T Consensus        85 g~iD~lv~~Ag~   96 (261)
T 2wyu_A           85 GGLDYLVHAIAF   96 (261)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.10  E-value=0.041  Score=48.18  Aligned_cols=80  Identities=13%  Similarity=0.182  Sum_probs=47.5

Q ss_pred             CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh--HHHHHHcC--Cc-eEeCCCCCCchHHHHHHHHhcC-
Q 022819          190 DISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFG--VT-EFLNPNDNNEPVQQVIKRITDG-  262 (291)
Q Consensus       190 ~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~--~~~a~~~g--~~-~~i~~~~~~~~~~~~~~~~~~g-  262 (291)
                      .-+++.+|||+|+ |.+|..+++.+...|. +|++++++.++  ...++.+.  .. .++..+-.+.   +.+.++..+ 
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~   85 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADA---CSVQRAVIKA   85 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCH---HHHHHHHHHH
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceEEEECCCCCH---HHHHHHHHHc
Confidence            3467899999987 9999999999988998 99999887653  12233331  11 1222221112   223333333 


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+||.+.+.
T Consensus        86 ~~d~Vih~A~~   96 (335)
T 1rpn_A           86 QPQEVYNLAAQ   96 (335)
T ss_dssp             CCSEEEECCSC
T ss_pred             CCCEEEECccc
Confidence            68999999874

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.10  E-value=0.11  Score=45.26  Aligned_cols=86  Identities=9%  Similarity=0.101  Sum_probs=53.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh------hhHHHHH---HcCCceE-eCCCCCCchHHHHHHHHhcC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP------EKCEKAK---AFGVTEF-LNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~------~~~~~a~---~~g~~~~-i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ..+|+|+|+ |.+|..+++.+...|. +|++++++.      ++.+.++   ..++..+ .|..+  .   +.+.+... 
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d--~---~~l~~a~~-   76 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEE--H---EKMVSVLK-   76 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT-
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCC--H---HHHHHHHc-
Confidence            357999987 9999999999988998 888888875      3433332   3354332 23332  2   23344333 


Q ss_pred             CccEEEEccCCh--HHHHHHHHhhcc
Q 022819          263 GADYSFECIGDT--GMITTALQSCCD  286 (291)
Q Consensus       263 ~~d~vld~~g~~--~~~~~~~~~l~~  286 (291)
                      ++|+||.+.+..  .....+++.++.
T Consensus        77 ~~d~vi~~a~~~~~~~~~~l~~aa~~  102 (321)
T 3c1o_A           77 QVDIVISALPFPMISSQIHIINAIKA  102 (321)
T ss_dssp             TCSEEEECCCGGGSGGGHHHHHHHHH
T ss_pred             CCCEEEECCCccchhhHHHHHHHHHH
Confidence            589999998752  123344444443

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.10  E-value=0.11  Score=43.89  Aligned_cols=78  Identities=15%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-hhhHHHHHHc----CCce-E--eCCCCCCchHHHHHHHHhc--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCEKAKAF----GVTE-F--LNPNDNNEPVQQVIKRITD--  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~-~~~~~~a~~~----g~~~-~--i~~~~~~~~~~~~~~~~~~--  261 (291)
                      .++++||+|+ |++|.++++.+...|+ +|+.++++ ++..+.+++.    +... +  .|..+ .+++.+.+.+...  
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTK-KEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHh
Confidence            3578999987 8999999999999999 88877554 4444444332    2222 2  23332 1333333333221  


Q ss_pred             CCccEEEEccC
Q 022819          262 GGADYSFECIG  272 (291)
Q Consensus       262 g~~d~vld~~g  272 (291)
                      +++|+++.+.|
T Consensus        84 g~id~lv~~Ag   94 (264)
T 3i4f_A           84 GKIDFLINNAG   94 (264)
T ss_dssp             SCCCEEECCCC
T ss_pred             CCCCEEEECCc
Confidence            47999999998

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.10  E-value=0.007  Score=50.71  Aligned_cols=95  Identities=14%  Similarity=0.109  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC---ceEeCCCCCCchHHHHHHHHhcCCccEE
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV---TEFLNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~---~~~i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      ..++.+||-+|+| .|..+..+++.... ++++++.+++.++.+++...   ..+....   .+..+.+..+.++.||+|
T Consensus        58 ~~~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           58 SSKGGRVLEVGFG-MAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK---GLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTTCEEEEEECCT-TSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE---SCHHHHGGGSCTTCEEEE
T ss_pred             CCCCCeEEEEecc-CCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEe---cCHHHhhcccCCCceEEE
Confidence            4678899999986 46666666554333 89999999999888876321   1111111   222222222333579999


Q ss_pred             EE-ccC----Ch------HHHHHHHHhhccCccc
Q 022819          268 FE-CIG----DT------GMITTALQSCCDVRSI  290 (291)
Q Consensus       268 ld-~~g----~~------~~~~~~~~~l~~~G~i  290 (291)
                      +- +.+    ..      ..+..+.+.|++||++
T Consensus       133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l  166 (236)
T 1zx0_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEE
Confidence            86 222    11      2378889999999976

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.09  E-value=0.077  Score=50.02  Aligned_cols=79  Identities=19%  Similarity=0.301  Sum_probs=52.3

Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-------HHHHHHcCCceE-e--CCCCCCchHHHHHHHH
Q 022819          191 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-------CEKAKAFGVTEF-L--NPNDNNEPVQQVIKRI  259 (291)
Q Consensus       191 ~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-------~~~a~~~g~~~~-i--~~~~~~~~~~~~~~~~  259 (291)
                      +++++++||+|+ |++|..++..+...|+++|+.+.++...       .+.+++.|.... +  |..+ ...+.+.+.+ 
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~-  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE-RDALAALVTA-  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC-HHHHHHHHHH-
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHhc-
Confidence            567899999987 9999999988888898678888887532       123344464432 2  3322 1223333333 


Q ss_pred             hcCCccEEEEccCC
Q 022819          260 TDGGADYSFECIGD  273 (291)
Q Consensus       260 ~~g~~d~vld~~g~  273 (291)
                        +.+|+||.+.|.
T Consensus       334 --~~ld~VVh~AGv  345 (511)
T 2z5l_A          334 --YPPNAVFHTAGI  345 (511)
T ss_dssp             --SCCSEEEECCCC
T ss_pred             --CCCcEEEECCcc
Confidence              579999999884

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.09  E-value=0.058  Score=45.54  Aligned_cols=79  Identities=19%  Similarity=0.286  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHH----cCCce-Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKA----FGVTE-FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~----~g~~~-~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||+|+ |++|..++..+...|+ +|++++++.++.. .+++    .+... .+  |..+ .+++.+.+.+..  .
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDADL   90 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC-HHHHHHHHHHHHHhc
Confidence            4578999987 9999999999999999 8999988544322 2222    24332 22  3332 123333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++.+.|.
T Consensus        91 ~~id~li~~Ag~  102 (265)
T 1h5q_A           91 GPISGLIANAGV  102 (265)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999874

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.07  E-value=0.022  Score=48.64  Aligned_cols=76  Identities=14%  Similarity=0.219  Sum_probs=49.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHh--cCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g~~d~vl  268 (291)
                      .++++||.|+ |++|.+++..+...|+ +|+.++++.++.+..   .+.. ..|..+ .++..+.+.+..  .+++|+++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~---~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~lv  101 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSADP---DIHTVAGDISK-PETADRIVREGIERFGRIDSLV  101 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSST---TEEEEESCTTS-HHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccC---ceEEEEccCCC-HHHHHHHHHHHHHHCCCCCEEE
Confidence            5688999987 8999999999999999 999998876543211   1111 123332 123333333322  24799999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.|.
T Consensus       102 ~nAg~  106 (260)
T 3un1_A          102 NNAGV  106 (260)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99874

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.07  E-value=0.05  Score=47.71  Aligned_cols=77  Identities=19%  Similarity=0.222  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHH----HHHH-cCCc-eEeCCCCCCchHHHHHHHHhc-CCc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE----KAKA-FGVT-EFLNPNDNNEPVQQVIKRITD-GGA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~----~a~~-~g~~-~~i~~~~~~~~~~~~~~~~~~-g~~  264 (291)
                      .+.+|||+|+ |.+|..+++.+...|. +|++++++.++..    .+.+ .+.. .++..+-.+.+   .+.++.. .++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~   79 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDER---ALARIFDAHPI   79 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHH---HHHHHHHHSCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHH---HHHHHHhccCC
Confidence            4578999987 9999999999999999 8999987654322    1211 1221 23322221122   2232222 379


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+|+.+.+.
T Consensus        80 d~vih~A~~   88 (341)
T 3enk_A           80 TAAIHFAAL   88 (341)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECccc
Confidence            999999875

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=95.06  E-value=0.033  Score=46.89  Aligned_cols=96  Identities=16%  Similarity=0.080  Sum_probs=64.4

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCC-ceEeCCCCCCchHHHHHHHHhcC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGV-TEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g~-~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      +.+.....++.+||-+|+| .|..+..+++.. +. ++++++.+++.++.+++... ..++..+.  .++    .  ..+
T Consensus        25 l~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~--~~~----~--~~~   94 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCG-PGNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKADL--ATW----K--PAQ   94 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCT-TTHHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECCT--TTC----C--CSS
T ss_pred             HHHhcCCCCCCEEEEecCc-CCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECCh--hhc----C--ccC
Confidence            4455566788999999987 566777777765 55 89999999999998876522 12222221  111    0  123


Q ss_pred             CccEEEEccC------ChHHHHHHHHhhccCccc
Q 022819          263 GADYSFECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+....      ....+..+.+.|++||++
T Consensus        95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  128 (259)
T 2p35_A           95 KADLLYANAVFQWVPDHLAVLSQLMDQLESGGVL  128 (259)
T ss_dssp             CEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEE
T ss_pred             CcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEE
Confidence            7998886432      245678888899999875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.05  E-value=0.18  Score=43.52  Aligned_cols=74  Identities=22%  Similarity=0.330  Sum_probs=50.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|.. .  .    .+..+.+.     .+|+|+.++..+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~--~----~~~~~~~~-----~~D~vi~~vp~~   71 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-A--C----ENNQKVAA-----ASDIIFTSLPNA   71 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-E--C----SSHHHHHH-----HCSEEEECCSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-e--c----CCHHHHHh-----CCCEEEEECCCH
Confidence            478999999999999888888898 899999999888877765542 1  1    12222222     257777777654


Q ss_pred             HHHHHHH
Q 022819          275 GMITTAL  281 (291)
Q Consensus       275 ~~~~~~~  281 (291)
                      ..++..+
T Consensus        72 ~~~~~v~   78 (301)
T 3cky_A           72 GIVETVM   78 (301)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4344333

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.03  E-value=0.056  Score=48.15  Aligned_cols=46  Identities=37%  Similarity=0.580  Sum_probs=38.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      .+++|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.++++|+.
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~  209 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQ  209 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCE
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCce
Confidence            57899999999999999999999999 99999887665 355666653

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.02  E-value=0.043  Score=50.45  Aligned_cols=98  Identities=8%  Similarity=0.121  Sum_probs=64.5

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-EeCCCCCCchHHHHHHHHhc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-FLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~i~~~~~~~~~~~~~~~~~~  261 (291)
                      .....+++++||-.|+|+ |..+.++++..+-.+|++++.++++++.+++    .|... ++..+.  .++..   .+..
T Consensus       240 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~--~~~~~---~~~~  313 (429)
T 1sqg_A          240 TWLAPQNGEHILDLCAAP-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG--RYPSQ---WCGE  313 (429)
T ss_dssp             HHHCCCTTCEEEEESCTT-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT--TCTHH---HHTT
T ss_pred             HHcCCCCcCeEEEECCCc-hHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch--hhchh---hccc
Confidence            445678999999998865 6667778877642399999999998887754    35432 332222  22211   1223


Q ss_pred             CCccEEEE---ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFE---CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld---~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      +.||.|+-   |+|.                         ...+..+++.|++||++
T Consensus       314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~l  370 (429)
T 1sqg_A          314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTL  370 (429)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEE
T ss_pred             CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            47998875   4432                         24578888999999986

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.02  E-value=0.073  Score=45.35  Aligned_cols=79  Identities=18%  Similarity=0.326  Sum_probs=50.6

Q ss_pred             CCCEEEEEc---CChHHHHHHHHHHHcCCCeEEEEcCChhh-HHHH-HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFG---LGTVGLSVAQGAKARGASRIIGVDTNPEK-CEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G---~g~~G~~~i~~a~~~g~~~vi~~~~~~~~-~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||+|   +|++|.++++.+...|+ +|+.+++++++ .+.+ ++++... .  .|..+ .++..+.+.+..  .+
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   83 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN-EEHLASLAGRVTEAIG   83 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC-HHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            468899997   47999999999999999 89999887765 2333 3444321 2  23332 122333333221  13


Q ss_pred             ---CccEEEEccCC
Q 022819          263 ---GADYSFECIGD  273 (291)
Q Consensus       263 ---~~d~vld~~g~  273 (291)
                         ++|+++++.|.
T Consensus        84 ~~~~iD~lv~nAg~   97 (269)
T 2h7i_A           84 AGNKLDGVVHSIGF   97 (269)
T ss_dssp             TTCCEEEEEECCCC
T ss_pred             CCCCceEEEECCcc
Confidence               79999999874

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.01  E-value=0.089  Score=43.25  Aligned_cols=90  Identities=19%  Similarity=0.253  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-----------eEeCCCCCCchHHHHHHHH
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-----------EFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-----------~~i~~~~~~~~~~~~~~~~  259 (291)
                      ++++.+||-+|+|. |..+..+++. +. ++++++.+++.++.+++....           .++..+.  ..+     .+
T Consensus        28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~~~-----~~   97 (235)
T 3sm3_A           28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA--SSL-----SF   97 (235)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT--TSC-----CS
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc--ccc-----CC
Confidence            46889999999873 6677777776 77 999999999998888763211           1222211  110     01


Q ss_pred             hcCCccEEEEccC-----C-h---HHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFECIG-----D-T---GMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld~~g-----~-~---~~~~~~~~~l~~~G~i  290 (291)
                      ..+.+|+|+-...     . .   ..++.+.+.|+++|++
T Consensus        98 ~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l  137 (235)
T 3sm3_A           98 HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYL  137 (235)
T ss_dssp             CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEE
Confidence            1237898885321     2 2   5788889999999976

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.00  E-value=0.054  Score=47.47  Aligned_cols=93  Identities=12%  Similarity=0.088  Sum_probs=60.5

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC------C--c-e-EeCCCCCCchHHHHHHHHh
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG------V--T-E-FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g------~--~-~-~i~~~~~~~~~~~~~~~~~  260 (291)
                      ..++++||++|+| .|..+..+++..+..++++++.+++-.+.+++.-      .  . . ++.     .+..+.+.. .
T Consensus        93 ~~~~~~VLdiG~G-~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~-----~Da~~~l~~-~  165 (304)
T 2o07_A           93 HPNPRKVLIIGGG-DGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV-----GDGFEFMKQ-N  165 (304)
T ss_dssp             SSSCCEEEEEECT-TSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHHHT-C
T ss_pred             CCCCCEEEEECCC-chHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE-----CcHHHHHhh-C
Confidence            3567899999875 4566667777655459999999999888887631      1  1 1 221     223333332 2


Q ss_pred             cCCccEEEEccCC----------hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      .+.+|+|+-....          ...++.+.+.|+++|.+
T Consensus       166 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l  205 (304)
T 2o07_A          166 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVL  205 (304)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEE
T ss_pred             CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEE
Confidence            3479988743222          34688999999999975

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.00  E-value=0.03  Score=46.52  Aligned_cols=97  Identities=16%  Similarity=0.238  Sum_probs=63.6

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc---eEeCCCCCCchHHHHHHHHhc
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT---EFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~---~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      +.......++.+||-+|+|. |..+..+++. |..++++++.+++.++.+++....   .++..+.  .++     .+..
T Consensus        35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~--~~~-----~~~~  105 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADL--DKL-----HLPQ  105 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCG--GGC-----CCCT
T ss_pred             HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcCh--hhc-----cCCC
Confidence            44555566889999998863 6666666665 555899999999999999875432   1222111  110     0112


Q ss_pred             CCccEEEEccCC------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIGD------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g~------~~~~~~~~~~l~~~G~i  290 (291)
                      +.+|+|+....-      ...++.+.+.|+++|++
T Consensus       106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  140 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHF  140 (243)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             CCceEEEEeccccccchHHHHHHHHHHhcCcCcEE
Confidence            378988864321      45688889999999975

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.98  E-value=0.054  Score=48.27  Aligned_cols=75  Identities=13%  Similarity=0.245  Sum_probs=48.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCCceEeCCCCC-CchHHHHHHHHhcCCccEEEEc
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN-NEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~-~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      ..+|||+|+ |.+|..+++.+... |. +|++++++.++...+....-..++..+-. +.+.   +.+... ++|+||.+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~---~~~~~~-~~d~Vih~   98 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVKHERMHFFEGDITINKEW---VEYHVK-KCDVILPL   98 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHH---HHHHHH-HCSEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhccCCCeEEEeCccCCCHHH---HHHHhc-cCCEEEEc
Confidence            468999987 99999999988887 88 99999988776544333221223322211 1222   222221 58999998


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .+.
T Consensus        99 A~~  101 (372)
T 3slg_A           99 VAI  101 (372)
T ss_dssp             BCC
T ss_pred             Ccc
Confidence            774

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.98  E-value=0.12  Score=44.99  Aligned_cols=85  Identities=14%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-hHHHH---HHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCEKA---KAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~-~~~~a---~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      ++|||+|+ |.+|..++..+...|. +|++++++.+ +.+.+   +..++..+ .|..+  .   +.+.+... ++|+||
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d--~---~~l~~a~~-~~d~vi   84 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDE--H---EKLVELMK-KVDVVI   84 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTTCSCHHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT-TCSEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCCCchhhHHHHhhcCCCEEEEecCCC--H---HHHHHHHc-CCCEEE
Confidence            47999987 9999999999999998 8888888764 43333   33455432 23322  2   23333332 599999


Q ss_pred             EccCCh--HHHHHHHHhhcc
Q 022819          269 ECIGDT--GMITTALQSCCD  286 (291)
Q Consensus       269 d~~g~~--~~~~~~~~~l~~  286 (291)
                      .+.+..  .....+++.++.
T Consensus        85 ~~a~~~~~~~~~~l~~aa~~  104 (318)
T 2r6j_A           85 SALAFPQILDQFKILEAIKV  104 (318)
T ss_dssp             ECCCGGGSTTHHHHHHHHHH
T ss_pred             ECCchhhhHHHHHHHHHHHh
Confidence            998752  123344444443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=94.97  E-value=0.081  Score=46.50  Aligned_cols=96  Identities=14%  Similarity=0.161  Sum_probs=62.7

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHH
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~  259 (291)
                      ....++++++||-+|+| .|..++++++.++ ..+|++++.++++++.+++    .|...  ++..+.  .++.    . 
T Consensus       112 ~~l~~~~g~~VLDlg~G-~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~--~~~~----~-  183 (315)
T 1ixk_A          112 VALDPKPGEIVADMAAA-PGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS--LHIG----E-  183 (315)
T ss_dssp             HHHCCCTTCEEEECCSS-CSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG--GGGG----G-
T ss_pred             HHhCCCCCCEEEEeCCC-CCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh--hhcc----c-
Confidence            44567899999998875 3556667777653 2389999999999887754    35532  333221  2211    1 


Q ss_pred             hcCCccEEEE---ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFE---CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld---~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      ..+.||.|+-   |+|.                         ...+..+.+.|++||++
T Consensus       184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~l  242 (315)
T 1ixk_A          184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGIL  242 (315)
T ss_dssp             GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence            1347998774   3221                         25678899999999986

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=94.96  E-value=0.1  Score=44.77  Aligned_cols=97  Identities=13%  Similarity=0.186  Sum_probs=60.9

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHH-
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRI-  259 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~-  259 (291)
                      ..+++++++||-+|+| .|..+.++++.+ +..+|+++|.++++++.+++    .|...  ++..     +.......+ 
T Consensus        78 ~l~~~~g~~VLDlgaG-~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~-----D~~~~~~~~~  151 (274)
T 3ajd_A           78 VLNPREDDFILDMCAA-PGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINA-----DMRKYKDYLL  151 (274)
T ss_dssp             HHCCCTTCEEEETTCT-TCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CHHHHHHHHH
T ss_pred             HhCCCCcCEEEEeCCC-ccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeC-----ChHhcchhhh
Confidence            3457889999888775 355566677654 43499999999998887754    45432  2222     221211111 


Q ss_pred             -hcCCccEEEE---ccCC---------------------hHHHHHHHHhhccCccc
Q 022819          260 -TDGGADYSFE---CIGD---------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 -~~g~~d~vld---~~g~---------------------~~~~~~~~~~l~~~G~i  290 (291)
                       ..+.||.|+-   |.|.                     ...++.+++.|++||++
T Consensus       152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  207 (274)
T 3ajd_A          152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGEL  207 (274)
T ss_dssp             HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEE
T ss_pred             hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence             1347997764   3321                     35688888999999986

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.96  E-value=0.14  Score=43.75  Aligned_cols=44  Identities=34%  Similarity=0.585  Sum_probs=38.6

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      +|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+++.|..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~   45 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLV   45 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCC
Confidence            58899999999999999888898 899999999998888877753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.93  E-value=0.15  Score=44.01  Aligned_cols=74  Identities=22%  Similarity=0.278  Sum_probs=49.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChH
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG  275 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~  275 (291)
                      +|.|+|+|.+|...+..+...|. +|+++++++++.+.+++.|+...       .+..+.+.     ..|+||-++..+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~~Dvvi~~vp~~~   68 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQVV-------SSPADVAE-----KADRIITMLPTSI   68 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCEEC-------SSHHHHHH-----HCSEEEECCSSHH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeec-------CCHHHHHh-----cCCEEEEeCCCHH
Confidence            47888999999999988888898 89999999998888877664211       11222222     2577777765544


Q ss_pred             HHHHHHH
Q 022819          276 MITTALQ  282 (291)
Q Consensus       276 ~~~~~~~  282 (291)
                      .....+.
T Consensus        69 ~~~~v~~   75 (296)
T 2gf2_A           69 NAIEAYS   75 (296)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            4444443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.92  E-value=0.11  Score=43.38  Aligned_cols=76  Identities=12%  Similarity=0.136  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ....+++|+|+|.+|...++.+...|.  |+++++++++.+.++ .+... +.-+..+.   +.+++..-..+|.|+-++
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~-~~~~~-i~gd~~~~---~~l~~a~i~~ad~vi~~~   79 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR-SGANF-VHGDPTRV---SDLEKANVRGARAVIVDL   79 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH-TTCEE-EESCTTCH---HHHHHTTCTTCSEEEECC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh-cCCeE-EEcCCCCH---HHHHhcCcchhcEEEEcC
Confidence            456789999999999988888887776  888898888888777 66443 32221112   234443233789999988


Q ss_pred             CCh
Q 022819          272 GDT  274 (291)
Q Consensus       272 g~~  274 (291)
                      +..
T Consensus        80 ~~d   82 (234)
T 2aef_A           80 ESD   82 (234)
T ss_dssp             SCH
T ss_pred             CCc
Confidence            874

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=94.92  E-value=0.028  Score=44.15  Aligned_cols=91  Identities=18%  Similarity=0.132  Sum_probs=61.7

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhcCCcc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      +...+.++.+||-+|+|. |..+..+++.. . ++++++.+++..+.+++.... .++..     +     ..+..+.+|
T Consensus        11 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~~~~~~v~~~~~-----d-----~~~~~~~~D   77 (170)
T 3i9f_A           11 PNIFEGKKGVIVDYGCGN-GFYCKYLLEFA-T-KLYCIDINVIALKEVKEKFDSVITLSD-----P-----KEIPDNSVD   77 (170)
T ss_dssp             HHHHSSCCEEEEEETCTT-CTTHHHHHTTE-E-EEEEECSCHHHHHHHHHHCTTSEEESS-----G-----GGSCTTCEE
T ss_pred             HhcCcCCCCeEEEECCCC-CHHHHHHHhhc-C-eEEEEeCCHHHHHHHHHhCCCcEEEeC-----C-----CCCCCCceE
Confidence            344567888999998863 66666666655 4 999999999999988875221 12211     1     122234799


Q ss_pred             EEEEccCC------hHHHHHHHHhhccCccc
Q 022819          266 YSFECIGD------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~------~~~~~~~~~~l~~~G~i  290 (291)
                      +|+..-.-      ...++.+.+.|+++|++
T Consensus        78 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  108 (170)
T 3i9f_A           78 FILFANSFHDMDDKQHVISEVKRILKDDGRV  108 (170)
T ss_dssp             EEEEESCSTTCSCHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEccchhcccCHHHHHHHHHHhcCCCCEE
Confidence            98864322      35688899999999976

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.92  E-value=0.11  Score=44.90  Aligned_cols=69  Identities=12%  Similarity=0.091  Sum_probs=47.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++.+.+ ++  +.. ++..+   -. .+.+.+... ++|+||.+.+.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~-~~~~D---l~-~~~~~~~~~-~~d~Vih~a~~   72 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYE-YRVSD---YT-LEDLINQLN-DVDAVVHLAAT   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCE-EEECC---CC-HHHHHHHTT-TCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceE-EEEcc---cc-HHHHHHhhc-CCCEEEEcccc
Confidence            58999987 9999999999999998 9999998855544 33  332 23222   22 445555544 79999998874

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=94.90  E-value=0.071  Score=46.12  Aligned_cols=93  Identities=12%  Similarity=0.085  Sum_probs=60.6

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-CC-------ce--EeCCCCCCchHHHHHHHHh
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GV-------TE--FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-g~-------~~--~i~~~~~~~~~~~~~~~~~  260 (291)
                      ..++++||++|+| .|..+..+++..+..++++++.+++-.+.+++. ..       ..  ++.     .+..+.+... 
T Consensus        76 ~~~~~~VLdiG~G-~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~-----~D~~~~l~~~-  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGG-DGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI-----EDASKFLENV-  148 (283)
T ss_dssp             SSSCCEEEEEECT-TSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE-----SCHHHHHHHC-
T ss_pred             CCCCCeEEEEeCC-cCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE-----CChHHHHHhC-
Confidence            3467899999875 355566666665445999999999999988763 21       11  121     2333333332 


Q ss_pred             cCCccEEEEccCC----------hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      .+.+|+|+-....          ...++.+.+.|+++|.+
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~l  188 (283)
T 2i7c_A          149 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYC  188 (283)
T ss_dssp             CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEE
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEE
Confidence            3489987752210          46788999999999975

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=94.89  E-value=0.16  Score=40.62  Aligned_cols=92  Identities=14%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHHhcCCcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      .++++||-+|+| .|..++.+++ .+..+|++++.+++.++.+++    .+.+.  ++.     .+..+....+..+.+|
T Consensus        43 ~~~~~vLDlgcG-~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~-----~d~~~~~~~~~~~~fD  115 (189)
T 3p9n_A           43 LTGLAVLDLYAG-SGALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGLSGATLRR-----GAVAAVVAAGTTSPVD  115 (189)
T ss_dssp             CTTCEEEEETCT-TCHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEE-----SCHHHHHHHCCSSCCS
T ss_pred             CCCCEEEEeCCC-cCHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEE-----ccHHHHHhhccCCCcc
Confidence            578899999875 3444444444 466589999999998887765    24322  222     2333333333245899


Q ss_pred             EEEEccC--C-----hHHHHHHHH--hhccCccc
Q 022819          266 YSFECIG--D-----TGMITTALQ--SCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g--~-----~~~~~~~~~--~l~~~G~i  290 (291)
                      +|+-...  .     ...+..+.+  .|+++|.+
T Consensus       116 ~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l  149 (189)
T 3p9n_A          116 LVLADPPYNVDSADVDAILAALGTNGWTREGTVA  149 (189)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEE
T ss_pred             EEEECCCCCcchhhHHHHHHHHHhcCccCCCeEE
Confidence            8886422  1     234555666  78888875

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=94.88  E-value=0.022  Score=52.82  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHH
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~  259 (291)
                      ....++++++||-+|+|+ |..+.++++.++- .+|++++.++++++.+++    +|...  ++..+.  .++.   ..+
T Consensus       253 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~--~~~~---~~~  326 (450)
T 2yxl_A          253 IVLDPKPGETVVDLAAAP-GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDA--RKAP---EII  326 (450)
T ss_dssp             HHHCCCTTCEEEESSCTT-CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCT--TCCS---SSS
T ss_pred             HhcCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcCh--hhcc---hhh
Confidence            445678999999988865 6667777877642 399999999999887754    46532  332221  1110   001


Q ss_pred             hcCCccEEEE---ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFE---CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld---~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      ..+.||.|+-   |+|.                         ...+..+++.|++||++
T Consensus       327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l  385 (450)
T 2yxl_A          327 GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRL  385 (450)
T ss_dssp             CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            1236998875   3332                         34688889999999986

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=94.87  E-value=0.039  Score=47.61  Aligned_cols=92  Identities=14%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc------CC--ce--EeCCCCCCchHHHHHHHHhc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF------GV--TE--FLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~------g~--~~--~i~~~~~~~~~~~~~~~~~~  261 (291)
                      .++++||++|+| .|..+..+++..+..+|++++.+++-.+.+++.      +.  +.  ++..     +..+.+.. ..
T Consensus        74 ~~~~~VLdiG~G-~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~-----D~~~~l~~-~~  146 (275)
T 1iy9_A           74 PNPEHVLVVGGG-DGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD-----DGFMHIAK-SE  146 (275)
T ss_dssp             SSCCEEEEESCT-TCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES-----CSHHHHHT-CC
T ss_pred             CCCCEEEEECCc-hHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC-----cHHHHHhh-CC
Confidence            356899999875 355666777766666999999999988888763      11  11  2221     22233332 23


Q ss_pred             CCccEEEEccCC----------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      +.+|+|+-....          .+.++.+.+.|+++|.+
T Consensus       147 ~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~l  185 (275)
T 1iy9_A          147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIF  185 (275)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEE
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEE
Confidence            479987754322          46889999999999975

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=94.87  E-value=0.14  Score=47.19  Aligned_cols=102  Identities=20%  Similarity=0.244  Sum_probs=65.3

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-------H----HcC--Cce--EeCCCCCC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-------K----AFG--VTE--FLNPNDNN  249 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-------~----~~g--~~~--~i~~~~~~  249 (291)
                      +.+...+.++++||-+|+| .|..++.+|+..++.+|++++.+++-.+.+       +    .+|  ...  ++..++..
T Consensus       234 ml~~l~l~~g~~VLDLGCG-sG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~  312 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  312 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHhcCCCCCCEEEEeCCC-cCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccc
Confidence            3455678899999999987 688888999987876899999999876555       3    345  222  22221111


Q ss_pred             chHHHHHHHHhcCCccEEEEc--cCC---hHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDGGADYSFEC--IGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~--~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      ..+  .+... .+.||+|+-.  ...   +..+..+.+.|++||+|
T Consensus       313 ~~~--~~~~~-~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~l  355 (433)
T 1u2z_A          313 DNN--RVAEL-IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKI  355 (433)
T ss_dssp             TCH--HHHHH-GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEE
T ss_pred             ccc--ccccc-cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEE
Confidence            111  11111 2369998852  222   23456888899999986

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.87  E-value=0.025  Score=46.55  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=48.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+.+  .++ .++..+-  .+..+.+.+... ++|+||.+.|.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~-~~~~~D~--~d~~~~~~~~~~-~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNV-KAVHFDV--DWTPEEMAKQLH-GMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTE-EEEECCT--TSCHHHHHTTTT-TCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCc-eEEEecc--cCCHHHHHHHHc-CCCEEEECCcC
Confidence            5899987 9999999999999998 999999988765432  122 2332222  111234444333 69999999885

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=94.87  E-value=0.12  Score=47.92  Aligned_cols=79  Identities=22%  Similarity=0.354  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhH---HHHHHcCCce-EeCCCCCCchHHHHHHHHh--cC-Cc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC---EKAKAFGVTE-FLNPNDNNEPVQQVIKRIT--DG-GA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~---~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~--~g-~~  264 (291)
                      +++++||+|+ |++|..+++.+...|+ +|+.+++++...   +..++++... ..|..+ .++....+.+..  .+ .+
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd-~~~v~~~~~~~~~~~g~~i  289 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGAAEDLKRVADKVGGTALTLDVTA-DDAVDKITAHVTEHHGGKV  289 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHHHTCEEEECCTTS-TTHHHHHHHHHHHHSTTCC
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEecCC-HHHHHHHHHHHHHHcCCCc
Confidence            5678999986 9999999988888899 899888754322   2334455543 234433 233333333321  23 49


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++.+.|.
T Consensus       290 d~lV~nAGv  298 (454)
T 3u0b_A          290 DILVNNAGI  298 (454)
T ss_dssp             SEEEECCCC
T ss_pred             eEEEECCcc
Confidence            999999885

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=94.86  E-value=0.12  Score=46.29  Aligned_cols=82  Identities=21%  Similarity=0.135  Sum_probs=59.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHc-CCCeEE-EEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          195 STVVIFGLGTVGLSVAQGAKAR-GASRII-GVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~-g~~~vi-~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      -+|.|+|+|.+|...+..++.. ++ +++ +.++++++.+.++++|+..   +    .++.+.+.+   ..+|+|+.|+.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~~---~----~~~~~ll~~---~~~D~V~i~tp   74 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLKI---Y----ESYEAVLAD---EKVDAVLIATP   74 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCCB---C----SCHHHHHHC---TTCCEEEECSC
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCce---e----CCHHHHhcC---CCCCEEEEcCC
Confidence            4688999999999888877766 66 555 4578888888777777632   2    233333332   37899999999


Q ss_pred             ChHHHHHHHHhhccC
Q 022819          273 DTGMITTALQSCCDV  287 (291)
Q Consensus       273 ~~~~~~~~~~~l~~~  287 (291)
                      .....+.+..+++.|
T Consensus        75 ~~~h~~~~~~al~aG   89 (359)
T 3e18_A           75 NDSHKELAISALEAG   89 (359)
T ss_dssp             GGGHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHCC
Confidence            877788888888765

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.85  E-value=0.064  Score=49.85  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=56.2

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHc-CC--CeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCc
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKAR-GA--SRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~-g~--~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      .++.-..+|||+|+|++|..++.++... +.  ..|+.++..+++.+..+.+|.... ...+.  .+..+.+.++..++ 
T Consensus         8 ~~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vda--dnv~~~l~aLl~~~-   84 (480)
T 2ph5_A            8 KKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITP--QNYLEVIGSTLEEN-   84 (480)
T ss_dssp             TCBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCT--TTHHHHTGGGCCTT-
T ss_pred             ceecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccc--hhHHHHHHHHhcCC-
Confidence            3445567899999999999999777654 44  267778777666666666675332 22222  55555565554444 


Q ss_pred             cEEEEccCChHHHH
Q 022819          265 DYSFECIGDTGMIT  278 (291)
Q Consensus       265 d~vld~~g~~~~~~  278 (291)
                      |+|++..-....+.
T Consensus        85 DvVIN~s~~~~~l~   98 (480)
T 2ph5_A           85 DFLIDVSIGISSLA   98 (480)
T ss_dssp             CEEEECCSSSCHHH
T ss_pred             CEEEECCccccCHH
Confidence            99999765433333

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=94.85  E-value=0.12  Score=44.21  Aligned_cols=46  Identities=37%  Similarity=0.603  Sum_probs=39.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCCc
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      .+|.|+|+|.+|.+.++.+...|. .+|+++++++++.+.+++.|..
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~   48 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII   48 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc
Confidence            368899999999999999988885 2699999999999888888763

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=94.85  E-value=0.13  Score=47.65  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceEe--CCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFL--NPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~i--~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      +++|+|+|+|.+|..++..+...|. +|++++++.++.+.+. +++....+  |..+  .   +.+.++. .++|+|+++
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d--~---~~l~~~l-~~~DvVIn~   75 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND--D---AALDAEV-AKHDLVISL   75 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC--H---HHHHHHH-TTSSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC--H---HHHHHHH-cCCcEEEEC
Confidence            4689999999999999998888898 7888988887765443 23321222  3321  1   1222322 269999999


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      ++.
T Consensus        76 a~~   78 (450)
T 1ff9_A           76 IPY   78 (450)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=94.83  E-value=0.016  Score=48.53  Aligned_cols=96  Identities=13%  Similarity=0.119  Sum_probs=61.3

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHhc
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~---~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ....++.+||-+|+| .|..++.+++.....+|++++.+++..+.+++    .+..   .++..+.  .+   .+.+...
T Consensus        67 ~~~~~~~~vLDiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~---~~~~~~~  140 (232)
T 3ntv_A           67 IRMNNVKNILEIGTA-IGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA--LE---QFENVND  140 (232)
T ss_dssp             HHHHTCCEEEEECCS-SSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCG--GG---CHHHHTT
T ss_pred             HhhcCCCEEEEEeCc-hhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH--HH---HHHhhcc
Confidence            344578899999886 46677777775423399999999998887765    3432   1222211  12   1220113


Q ss_pred             CCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      +.||+||-....   ...++.+.+.|++||.|
T Consensus       141 ~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~l  172 (232)
T 3ntv_A          141 KVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLV  172 (232)
T ss_dssp             SCEEEEEEETTSSSHHHHHHHHGGGEEEEEEE
T ss_pred             CCccEEEEcCcHHHHHHHHHHHHHhcCCCeEE
Confidence            489988754332   35678888999999976

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=94.81  E-value=0.092  Score=44.00  Aligned_cols=97  Identities=15%  Similarity=0.150  Sum_probs=63.6

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC--c-eEeCCCCCCchHHHHHHHHhc
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--T-EFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~--~-~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      +.......++.+||-+|+|. |..+..+++. |..++++++.+++.++.+++...  . .++..+.  .++     .+..
T Consensus        36 l~~~~~~~~~~~vLD~GcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~--~~~-----~~~~  106 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGF-GWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAI--EDI-----AIEP  106 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCG--GGC-----CCCT
T ss_pred             HHHhhhccCCCEEEEECCCC-CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhccCCeEEEEcch--hhC-----CCCC
Confidence            44445556889999999863 6666777766 54499999999999998876532  1 1222211  110     0112


Q ss_pred             CCccEEEEccC------ChHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+|+|+-...      ....++.+.+.|++||++
T Consensus       107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  141 (253)
T 3g5l_A          107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSF  141 (253)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEE
Confidence            47999886432      145688889999999976

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=94.78  E-value=0.053  Score=43.77  Aligned_cols=89  Identities=18%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHHHhcCCcc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~-~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      +.++ +||-+|+|. |..+..+++. |. ++++++.+++.++.+++.    +... ++..+.  .+.     .+..+.+|
T Consensus        28 ~~~~-~vLdiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~~~-----~~~~~~fD   96 (202)
T 2kw5_A           28 IPQG-KILCLAEGE-GRNACFLASL-GY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL--ADF-----DIVADAWE   96 (202)
T ss_dssp             SCSS-EEEECCCSC-THHHHHHHTT-TC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT--TTB-----SCCTTTCS
T ss_pred             CCCC-CEEEECCCC-CHhHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh--hhc-----CCCcCCcc
Confidence            4566 899999864 6666666665 77 999999999988877653    3222 222221  111     11224799


Q ss_pred             EEEEccCC------hHHHHHHHHhhccCccc
Q 022819          266 YSFECIGD------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~------~~~~~~~~~~l~~~G~i  290 (291)
                      +|+.+...      ...+..+.+.|+++|++
T Consensus        97 ~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l  127 (202)
T 2kw5_A           97 GIVSIFCHLPSSLRQQLYPKVYQGLKPGGVF  127 (202)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHTTCCSSEEE
T ss_pred             EEEEEhhcCCHHHHHHHHHHHHHhcCCCcEE
Confidence            99875321      34577888899999975

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=94.78  E-value=0.047  Score=45.95  Aligned_cols=92  Identities=12%  Similarity=0.100  Sum_probs=61.4

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC----Cc-eEeCCCCCCchHHHHHHHHhcCC
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG----VT-EFLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g----~~-~~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      ..+.++.+||-+|+|. |..+..+++. +. ++++++.+++.++.+++.-    .. .++..+.  .++     .+..+.
T Consensus        35 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~~~-----~~~~~~  104 (263)
T 2yqz_A           35 HPKGEEPVFLELGVGT-GRIALPLIAR-GY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA--RAI-----PLPDES  104 (263)
T ss_dssp             CCSSSCCEEEEETCTT-STTHHHHHTT-TC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT--TSC-----CSCTTC
T ss_pred             cCCCCCCEEEEeCCcC-CHHHHHHHHC-CC-EEEEEECCHHHHHHHHHHhhccCCceEEEEccc--ccC-----CCCCCC
Confidence            3567889999998863 6666666665 76 9999999999998887641    11 1222211  111     012237


Q ss_pred             ccEEEEccC------ChHHHHHHHHhhccCccc
Q 022819          264 ADYSFECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      +|+|+....      ....+..+.+.|++||.+
T Consensus       105 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  137 (263)
T 2yqz_A          105 VHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGAL  137 (263)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEE
T ss_pred             eeEEEECCchhhcCCHHHHHHHHHHHCCCCcEE
Confidence            999886432      145788889999999975

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=94.78  E-value=0.12  Score=40.96  Aligned_cols=95  Identities=14%  Similarity=0.035  Sum_probs=62.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc----eEeCCCCCCchHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT----EFLNPNDNNEPVQQVI  256 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~----~~i~~~~~~~~~~~~~  256 (291)
                      +.+....+++++||-+|+| .|..+..+++. +. ++++++.+++..+.+++.    +..    .++..+.  .+.    
T Consensus        44 l~~~~~~~~~~~vLdiG~G-~G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~----  114 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCG-YGVIGIALADE-VK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--YEN----  114 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCT-TSHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--TTT----
T ss_pred             HHHHcccCCCCeEEEeCCC-CCHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch--hcc----
Confidence            3455566788999999886 46666777776 76 999999999988877653    332    2222221  110    


Q ss_pred             HHHhcCCccEEEEccCC-------hHHHHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFECIGD-------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~-------~~~~~~~~~~l~~~G~i  290 (291)
                        ...+.+|+|+-...-       ...++.+.+.|+++|++
T Consensus       115 --~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l  153 (194)
T 1dus_A          115 --VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             --CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             --cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEE
Confidence              112479988864331       25677788899999875

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.23  Score=42.78  Aligned_cols=98  Identities=15%  Similarity=0.069  Sum_probs=63.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHc-------CCce-EeCCCCCCchHHHHHHHHhc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAF-------GVTE-FLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~-------g~~~-~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ..++.+||-+|+| .|..+..+++.. ...++++++.+++.++.+++.       .... ++..+..+..+.. ...+..
T Consensus        34 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~  111 (299)
T 3g5t_A           34 DGERKLLVDVGCG-PGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG-ADSVDK  111 (299)
T ss_dssp             CSCCSEEEEETCT-TTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC-TTTTTS
T ss_pred             cCCCCEEEEECCC-CCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc-cccccC
Confidence            3588999999987 588888888865 444999999999988888763       1111 2222211111100 000111


Q ss_pred             CCccEEEEccC-----ChHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIG-----DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g-----~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+|+|+-...     ....+..+.+.|++||.|
T Consensus       112 ~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l  145 (299)
T 3g5t_A          112 QKIDMITAVECAHWFDFEKFQRSAYANLRKDGTI  145 (299)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEE
T ss_pred             CCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEE
Confidence            47999886432     146789999999999976

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.73  E-value=0.017  Score=49.53  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh--cCCccEEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT--DGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~--~g~~d~vld  269 (291)
                      +++++||.|+ |++|.++++.+...|+ +|+.++++.++.+....+    ..|..+ .......+.+..  .+++|+++.
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~-~~~~~~~~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLRE-AAYADGLPGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTS-HHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence            5688999987 8999999999999999 999998876653221110    112221 122222222221  247999999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus       101 nAg~  104 (266)
T 3uxy_A          101 NAGV  104 (266)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9885

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=94.72  E-value=0.052  Score=46.08  Aligned_cols=92  Identities=12%  Similarity=0.053  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHHHHhcC
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      .+.++.+||-+|+| .|..+..+++.-+. ++++++.+++.++.+++.    |..   .++..+.  .++     .+..+
T Consensus        43 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~-----~~~~~  113 (267)
T 3kkz_A           43 NLTEKSLIADIGCG-TGGQTMVLAGHVTG-QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM--DDL-----PFRNE  113 (267)
T ss_dssp             CCCTTCEEEEETCT-TCHHHHHHHTTCSS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----CCCTT
T ss_pred             cCCCCCEEEEeCCC-CCHHHHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh--hhC-----CCCCC
Confidence            47889999999987 47788888887555 999999999988877653    332   1222221  111     01124


Q ss_pred             CccEEEEc-----cCChHHHHHHHHhhccCccc
Q 022819          263 GADYSFEC-----IGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~-----~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+-.     ++....++.+.+.|++||++
T Consensus       114 ~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l  146 (267)
T 3kkz_A          114 ELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYL  146 (267)
T ss_dssp             CEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEE
T ss_pred             CEEEEEEcCCceecCHHHHHHHHHHHcCCCCEE
Confidence            79998852     23356788899999999976

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=94.71  E-value=0.04  Score=46.54  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=59.8

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHH----HHHcCCce---EeCCCCCCchHHHHHHHHh
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEK----AKAFGVTE---FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~----a~~~g~~~---~i~~~~~~~~~~~~~~~~~  260 (291)
                      ...++++||-+|+| .|..++.+|+.+  +. +|++++.+++..+.    +++.|...   ++.     .+..+.+..+.
T Consensus        57 ~~~~~~~VLDiG~G-~G~~t~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~-----gda~~~l~~~~  129 (242)
T 3r3h_A           57 RLTRAKKVLELGTF-TGYSALAMSLALPDDG-QVITCDINEGWTKHAHPYWREAKQEHKIKLRL-----GPALDTLHSLL  129 (242)
T ss_dssp             HHHTCSEEEEEESC-CSHHHHHHHHTSCTTC-EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE-----SCHHHHHHHHH
T ss_pred             hhcCcCEEEEeeCC-cCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-----cCHHHHHHHHh
Confidence            34567899999886 467777888876  45 99999998875443    34445431   222     12223333321


Q ss_pred             ----cCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 ----DGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ----~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                          .+.||+||-....   ...++.+.+.|++||.|
T Consensus       130 ~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  166 (242)
T 3r3h_A          130 NEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLI  166 (242)
T ss_dssp             HHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             hccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEE
Confidence                2489987754332   24578899999999976

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=94.70  E-value=0.031  Score=45.61  Aligned_cols=89  Identities=13%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-CCceEeCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVTEFLNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      .+.++.+||-+|+| .|..+..+++. |. ++++++.+++.++.+++. +..... .+.  .++    .  ..+.+|+|+
T Consensus        40 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~d~--~~~----~--~~~~fD~v~  107 (211)
T 3e23_A           40 ELPAGAKILELGCG-AGYQAEAMLAA-GF-DVDATDGSPELAAEASRRLGRPVRT-MLF--HQL----D--AIDAYDAVW  107 (211)
T ss_dssp             TSCTTCEEEESSCT-TSHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHTSCCEE-CCG--GGC----C--CCSCEEEEE
T ss_pred             hcCCCCcEEEECCC-CCHHHHHHHHc-CC-eEEEECCCHHHHHHHHHhcCCceEE-eee--ccC----C--CCCcEEEEE
Confidence            45678899999886 45666666665 77 999999999988888764 432221 111  111    0  234799988


Q ss_pred             EccC--------ChHHHHHHHHhhccCccc
Q 022819          269 ECIG--------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       269 d~~g--------~~~~~~~~~~~l~~~G~i  290 (291)
                      -.-.        ....+..+.+.|+++|++
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  137 (211)
T 3e23_A          108 AHACLLHVPRDELADVLKLIWRALKPGGLF  137 (211)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ecCchhhcCHHHHHHHHHHHHHhcCCCcEE
Confidence            6421        124678888999999976

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.69  E-value=0.062  Score=45.88  Aligned_cols=71  Identities=21%  Similarity=0.243  Sum_probs=49.0

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          196 TVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      +|||+|+ |.+|..+++.+...  |. +|++++++.++.+.+...+...+ .|..+  .   +.+.+... ++|+||.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d--~---~~l~~~~~-~~d~vi~~a   74 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ--P---ESLQKAFA-GVSKLLFIS   74 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC--H---HHHHHHTT-TCSEEEECC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC--H---HHHHHHHh-cCCEEEEcC
Confidence            5889987 99999999888887  87 89999888777665544454332 23322  2   23444333 689999988


Q ss_pred             CC
Q 022819          272 GD  273 (291)
Q Consensus       272 g~  273 (291)
                      +.
T Consensus        75 ~~   76 (287)
T 2jl1_A           75 GP   76 (287)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.67  E-value=0.17  Score=43.50  Aligned_cols=73  Identities=26%  Similarity=0.323  Sum_probs=49.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhhH--HHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARG-ASRIIGVDTNPEKC--EKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~--~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      .++|||+|+ |.+|..+++.+...| . +|+++++++++.  +.+...++..+ .|..+  .   +.+.+... ++|+||
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d--~---~~l~~~~~-~~d~vi   77 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQDD--Q---VIMELALN-GAYATF   77 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT-TCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCEEEEecCCC--H---HHHHHHHh-cCCEEE
Confidence            468999987 999999998888888 7 899998887653  23334455432 23322  2   23333332 589999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.+.
T Consensus        78 ~~a~~   82 (299)
T 2wm3_A           78 IVTNY   82 (299)
T ss_dssp             ECCCH
T ss_pred             EeCCC
Confidence            98874

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=94.64  E-value=0.12  Score=42.97  Aligned_cols=70  Identities=23%  Similarity=0.304  Sum_probs=44.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +++||+|+ |.+|..++..+...|. +|+++++++++.+.      ....|..+ ...+.+.+.++ .+++|+++.+.|.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~~~D~~~-~~~~~~~~~~~-~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIEA------DLSTPGGR-ETAVAAVLDRC-GGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH-HHHHHHHHHHH-TTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHccc------cccCCccc-HHHHHHHHHHc-CCCccEEEECCCC
Confidence            46899987 9999999998888998 89999887654311      00001100 01222222222 2589999998874

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.64  E-value=0.25  Score=41.25  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP-EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      .+.+|||+|+|.+|...+..+...|+ .|++++... +.++.+.+.+.-..+.....+.+         -.++|+||-++
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~d---------L~~adLVIaAT   99 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLRVKRKKVGEED---------LLNVFFIVVAT   99 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCEEECSCCCGGG---------SSSCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcEEEECCCCHhH---------hCCCCEEEECC
Confidence            56889999999999999999999999 788776543 23333323332223322111111         12689999999


Q ss_pred             CChHHHHHHHHhhcc
Q 022819          272 GDTGMITTALQSCCD  286 (291)
Q Consensus       272 g~~~~~~~~~~~l~~  286 (291)
                      +.+.. +..+...++
T Consensus       100 ~d~~~-N~~I~~~ak  113 (223)
T 3dfz_A          100 NDQAV-NKFVKQHIK  113 (223)
T ss_dssp             CCTHH-HHHHHHHSC
T ss_pred             CCHHH-HHHHHHHHh
Confidence            98644 444444333

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=94.63  E-value=0.17  Score=41.53  Aligned_cols=92  Identities=15%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH-HhcCCc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR-ITDGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~-~~~g~~  264 (291)
                      .++.+||=+|+| .|..++.+|+.....++++++.+++.++.+++    .+...  ++..+.  .+    +.. +..+.+
T Consensus        37 ~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~--~~----l~~~~~~~~~  109 (213)
T 2fca_A           37 NDNPIHIEVGTG-KGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA--DT----LTDVFEPGEV  109 (213)
T ss_dssp             SCCCEEEEECCT-TSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG--GG----HHHHCCTTSC
T ss_pred             CCCceEEEEecC-CCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCH--HH----HHhhcCcCCc
Confidence            356788888987 57778888887633399999999998887754    34432  333221  22    222 223478


Q ss_pred             cEEEEccCC--------------hHHHHHHHHhhccCccc
Q 022819          265 DYSFECIGD--------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld~~g~--------------~~~~~~~~~~l~~~G~i  290 (291)
                      |.|+-....              +..++.+.+.|++||.|
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l  149 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSI  149 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEE
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEE
Confidence            877654332              35789999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=94.61  E-value=0.043  Score=45.29  Aligned_cols=93  Identities=19%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHH----cCCce---EeCCCCCCchHHHHHHHHh
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVTE---FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~----~g~~~---~i~~~~~~~~~~~~~~~~~  260 (291)
                      ...++++||-+|+| .|..++.+++.+  +. +|++++.+++..+.+++    .|...   ++.     .+..+.+..+.
T Consensus        55 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~l~~~~  127 (221)
T 3u81_A           55 REYSPSLVLELGAY-CGYSAVRMARLLQPGA-RLLTMEINPDCAAITQQMLNFAGLQDKVTILN-----GASQDLIPQLK  127 (221)
T ss_dssp             HHHCCSEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE-----SCHHHHGGGTT
T ss_pred             HhcCCCEEEEECCC-CCHHHHHHHHhCCCCC-EEEEEeCChHHHHHHHHHHHHcCCCCceEEEE-----CCHHHHHHHHH
Confidence            34577899999886 477778888865  55 99999999998888765    34431   221     22333333332


Q ss_pred             c----CCccEEEEccCChHH------HHHHHHhhccCccc
Q 022819          261 D----GGADYSFECIGDTGM------ITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~----g~~d~vld~~g~~~~------~~~~~~~l~~~G~i  290 (291)
                      .    +.||+||-.......      +... +.|++||.|
T Consensus       128 ~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~l  166 (221)
T 3u81_A          128 KKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVL  166 (221)
T ss_dssp             TTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEE
T ss_pred             HhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEE
Confidence            1    479988754332222      2222 689999975

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.61  E-value=0.05  Score=45.87  Aligned_cols=81  Identities=22%  Similarity=0.284  Sum_probs=48.8

Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhhH----HHHHHcCCce-Ee--CCCCCCchHHHHHHHHh-
Q 022819          191 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKC----EKAKAFGVTE-FL--NPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       191 ~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~-~~~~~~----~~a~~~g~~~-~i--~~~~~~~~~~~~~~~~~-  260 (291)
                      ..+++++||+|+ |++|.+++..+...|+ +|+.++ ++.++.    +.+++.+... .+  |..+ .++..+.+.+.. 
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   87 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGD-WDSTKQAFDKVKA   87 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCC-HHHHHHHHHHHHH
Confidence            356788999987 8999999999999999 787776 443332    2233444332 22  3322 123333333322 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .+++|+++.+.|.
T Consensus        88 ~~g~id~lv~~Ag~  101 (256)
T 3ezl_A           88 EVGEIDVLVNNAGI  101 (256)
T ss_dssp             HTCCEEEEEECCCC
T ss_pred             hcCCCCEEEECCCC
Confidence             2479999999884

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=94.60  E-value=0.051  Score=44.93  Aligned_cols=98  Identities=14%  Similarity=0.129  Sum_probs=61.4

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhcC
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ...++++++||-+|+|. |..+..+++..|. .+|++++.+++..+.+++.    .-..++..+..+...   ... ..+
T Consensus        68 ~~~~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~-~~~  142 (227)
T 1g8a_A           68 NFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE---YRA-LVP  142 (227)
T ss_dssp             CCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG---GTT-TCC
T ss_pred             hcCCCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcch---hhc-ccC
Confidence            34577899999999874 7788888887642 3999999999766655432    111122222111100   001 123


Q ss_pred             CccEEEEccCCh----HHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGDT----GMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~~----~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+-....+    ..+..+.+.|++||++
T Consensus       143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l  174 (227)
T 1g8a_A          143 KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYG  174 (227)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             CceEEEECCCCHhHHHHHHHHHHHhcCCCCEE
Confidence            789888655443    2378889999999975

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=94.59  E-value=0.076  Score=47.10  Aligned_cols=46  Identities=30%  Similarity=0.382  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      .+.+|.|+|.|.+|...++.++..|. +|++.+++.++.+.++++|.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCc
Confidence            46789999999999999999999999 89999887766555555553

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=94.59  E-value=0.12  Score=45.48  Aligned_cols=90  Identities=10%  Similarity=0.053  Sum_probs=60.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHc-CCc---e-EeCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          195 STVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAF-GVT---E-FLNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~-g~~---~-~i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      .+||++|+| .|..+..+++.. +. ++++++.+++-.+.+++. +..   . -+..    .+..+.+.++..+.||+|+
T Consensus        91 ~rVLdIG~G-~G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~----~Da~~~l~~~~~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGG-ACTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKIRV----DDARMVAESFTPASRDVII  164 (317)
T ss_dssp             CEEEEESCG-GGHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEEEE----SCHHHHHHTCCTTCEEEEE
T ss_pred             CEEEEEECC-cCHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEEEE----CcHHHHHhhccCCCCCEEE
Confidence            389999876 466677777754 66 899999999999999864 321   1 1111    3344455444345899877


Q ss_pred             EccC----------ChHHHHHHHHhhccCccc
Q 022819          269 ECIG----------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       269 d~~g----------~~~~~~~~~~~l~~~G~i  290 (291)
                      --..          ..+.+..+.+.|+++|.+
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvl  196 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLY  196 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEE
Confidence            5321          146788999999999975

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=94.58  E-value=0.095  Score=42.81  Aligned_cols=94  Identities=16%  Similarity=0.027  Sum_probs=61.0

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC--ceEeCCCCCCchHHHHHHHHhcCC
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--TEFLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~--~~~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      .+.....++.+||-+|+| .|..+..+++. +. ++++++.+++.++.+++.-.  ..++..+.  .++     ... +.
T Consensus        38 l~~~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~--~~~-----~~~-~~  106 (220)
T 3hnr_A           38 LEDVVNKSFGNVLEFGVG-TGNLTNKLLLA-GR-TVYGIEPSREMRMIAKEKLPKEFSITEGDF--LSF-----EVP-TS  106 (220)
T ss_dssp             HHHHHHTCCSEEEEECCT-TSHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHSCTTCCEESCCS--SSC-----CCC-SC
T ss_pred             HHHhhccCCCeEEEeCCC-CCHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHhCCCceEEEeCCh--hhc-----CCC-CC
Confidence            333444688899999886 36666666665 77 99999999999888876422  12332221  111     001 47


Q ss_pred             ccEEEEccCC-----h---HHHHHHHHhhccCccc
Q 022819          264 ADYSFECIGD-----T---GMITTALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g~-----~---~~~~~~~~~l~~~G~i  290 (291)
                      +|+|+-...-     +   ..+..+.+.|++||.+
T Consensus       107 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  141 (220)
T 3hnr_A          107 IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKI  141 (220)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             eEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEE
Confidence            8988864221     1   1788899999999976

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=94.57  E-value=0.2  Score=41.47  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhh----HHHHHHcCCceEeCCCCCCchHHHHHHHHhcC
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEK----CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~----~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ...++++++||-+|+|. |..+..+++..| ..+|++++.+++.    .+.+++..--.++..+..+..   .+ ....+
T Consensus        72 ~~~~~~~~~vLDlG~G~-G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~---~~-~~~~~  146 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAAS-GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPH---KY-RMLIA  146 (233)
T ss_dssp             CCCCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGG---GG-GGGCC
T ss_pred             eecCCCCCEEEEEcccC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChh---hh-cccCC
Confidence            44578899999999874 888888888864 2399999999653    444444321123322211111   00 11234


Q ss_pred             CccEEEEccCCh----HHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGDT----GMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~~----~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+.....+    ..+..+.+.|+++|++
T Consensus       147 ~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l  178 (233)
T 2ipx_A          147 MVDVIFADVAQPDQTRIVALNAHTFLRNGGHF  178 (233)
T ss_dssp             CEEEEEECCCCTTHHHHHHHHHHHHEEEEEEE
T ss_pred             cEEEEEEcCCCccHHHHHHHHHHHHcCCCeEE
Confidence            799888755443    1256788899999975

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.57  E-value=0.25  Score=44.24  Aligned_cols=45  Identities=18%  Similarity=0.337  Sum_probs=39.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      ..+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~   66 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGI   66 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            3579999999999999999999998 99999999999888876654

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=94.56  E-value=0.14  Score=48.01  Aligned_cols=81  Identities=17%  Similarity=0.276  Sum_probs=52.8

Q ss_pred             CCC--CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-------hHHHHHHcCCceE-e--CCCCCCchHHHHHHH
Q 022819          192 SKG--STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-------KCEKAKAFGVTEF-L--NPNDNNEPVQQVIKR  258 (291)
Q Consensus       192 ~~~--~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~-------~~~~a~~~g~~~~-i--~~~~~~~~~~~~~~~  258 (291)
                      ++.  +++||+|+ |++|..+++.+...|+.+++.+.++..       ..+.+++.|.... +  |..+ ...+.+.+.+
T Consensus       235 ~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~  313 (496)
T 3mje_A          235 RPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAAD-REALAALLAE  313 (496)
T ss_dssp             CCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHH
Confidence            445  89999986 999999998888889878888877532       1233445676442 2  3322 2334444444


Q ss_pred             Hhc-CCccEEEEccCC
Q 022819          259 ITD-GGADYSFECIGD  273 (291)
Q Consensus       259 ~~~-g~~d~vld~~g~  273 (291)
                      ... +++|++|.+.|.
T Consensus       314 i~~~g~ld~vVh~AGv  329 (496)
T 3mje_A          314 LPEDAPLTAVFHSAGV  329 (496)
T ss_dssp             CCTTSCEEEEEECCCC
T ss_pred             HHHhCCCeEEEECCcc
Confidence            322 378999999885

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=94.54  E-value=0.074  Score=44.37  Aligned_cols=96  Identities=20%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc--eEeCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT--EFLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~--~~i~~~~~~~~~~~~~~~  258 (291)
                      +.+..+++++.+||-+|+|. |..+..+++. +. ++++++.+++.++.+++.    +..  .++..+.  .++     .
T Consensus        13 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~-----~   82 (239)
T 1xxl_A           13 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA--ESL-----P   82 (239)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT--TBC-----C
T ss_pred             HHHHhCcCCCCEEEEEccCc-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc--ccC-----C
Confidence            35667789999999999874 6666666665 45 999999999888877642    322  1222211  111     0


Q ss_pred             HhcCCccEEEEccCC------hHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIGD------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g~------~~~~~~~~~~l~~~G~i  290 (291)
                      +..+.||+|+....-      ...+..+.+.|++||++
T Consensus        83 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  120 (239)
T 1xxl_A           83 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRF  120 (239)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEE
Confidence            122478988865321      45688889999999975

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=94.51  E-value=0.13  Score=41.53  Aligned_cols=73  Identities=16%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceEeCCCCCC-chHHHHHHHHhcCCccEEEEcc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNN-EPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~i~~~~~~-~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      +++||.|+ |.+|..+++.+...   +|+++++++++.+.+. +++. ..+..+-.+ .++.+.+.+  .+++|+++.+.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~--~~~id~vi~~a   74 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEE--AGPLDLLVHAV   74 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHH--HCSEEEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHh--cCCCCEEEECC
Confidence            36899987 99999887766555   8999999887766553 3333 333222211 223333333  35899999998


Q ss_pred             CC
Q 022819          272 GD  273 (291)
Q Consensus       272 g~  273 (291)
                      |.
T Consensus        75 g~   76 (207)
T 2yut_A           75 GK   76 (207)
T ss_dssp             CC
T ss_pred             Cc
Confidence            74

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=94.50  E-value=0.093  Score=42.51  Aligned_cols=92  Identities=18%  Similarity=0.183  Sum_probs=55.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhc----CCccE
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD----GGADY  266 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~----g~~d~  266 (291)
                      ++++++||-+|+|+ |..+..+++. +. +|+++|.++...    .-++ .++.-+-.+......+.+...    +.+|+
T Consensus        23 ~~~g~~VLDlG~G~-G~~s~~la~~-~~-~V~gvD~~~~~~----~~~v-~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~   94 (191)
T 3dou_A           23 VRKGDAVIEIGSSP-GGWTQVLNSL-AR-KIISIDLQEMEE----IAGV-RFIRCDIFKETIFDDIDRALREEGIEKVDD   94 (191)
T ss_dssp             SCTTCEEEEESCTT-CHHHHHHTTT-CS-EEEEEESSCCCC----CTTC-EEEECCTTSSSHHHHHHHHHHHHTCSSEEE
T ss_pred             CCCCCEEEEEeecC-CHHHHHHHHc-CC-cEEEEecccccc----CCCe-EEEEccccCHHHHHHHHHHhhcccCCcceE
Confidence            57899999998752 3344444544 66 999999887531    0122 233222222444455554433    48999


Q ss_pred             EEEc-----cCC------------hHHHHHHHHhhccCccc
Q 022819          267 SFEC-----IGD------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~-----~g~------------~~~~~~~~~~l~~~G~i  290 (291)
                      |+..     .|.            ...+..+.+.|++||++
T Consensus        95 Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~l  135 (191)
T 3dou_A           95 VVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNV  135 (191)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             EecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEE
Confidence            8852     332            23466778899999986

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=94.50  E-value=0.17  Score=46.99  Aligned_cols=97  Identities=11%  Similarity=0.160  Sum_probs=61.8

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhcC
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ....+++++||-+|+| .|..++++|+.++ ..+|+++|.++++++.+++    +|.. +....   .+... +.....+
T Consensus        96 ~L~~~~g~~VLDlgaG-pG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~---~Da~~-l~~~~~~  169 (464)
T 3m6w_A           96 LLDPKPGERVLDLAAA-PGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQ---APPRA-LAEAFGT  169 (464)
T ss_dssp             HHCCCTTCEEEESSCT-TCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEEC---SCHHH-HHHHHCS
T ss_pred             hcCcCCCCEEEEEcCC-cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEE---CCHHH-hhhhccc
Confidence            3457889999888775 3455666776653 2389999999999887754    5665 22111   12222 2222245


Q ss_pred             CccEEEE---ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          263 GADYSFE---CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld---~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      .||.|+-   |+|.                         ...+..++++|++||+|
T Consensus       170 ~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~L  225 (464)
T 3m6w_A          170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVL  225 (464)
T ss_dssp             CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            8998874   3321                         34677888899999986

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.50  E-value=0.17  Score=42.97  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~-~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      .+++++||.|+ +++|.++++.+...|+ +|+.++ ++.++.+..    ++.+... .  .|..+ ..+..+.+.+..  
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVAD-FESCERCAEKVLAD  100 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHH
Confidence            35678899987 8999999999999999 888887 444443322    2223322 2  23332 122333333222  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .+++|+++.+.|.
T Consensus       101 ~g~id~li~nAg~  113 (269)
T 3gk3_A          101 FGKVDVLINNAGI  113 (269)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1479999999884

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.50  E-value=0.021  Score=49.50  Aligned_cols=40  Identities=10%  Similarity=0.159  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE  232 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~  232 (291)
                      .+++++|+|+|++|.+++..+...|+++|+++.++.++.+
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~  155 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFN  155 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            5788999999999999999999999878888888887643

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.50  E-value=0.089  Score=46.52  Aligned_cols=76  Identities=12%  Similarity=0.089  Sum_probs=48.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHc--C-CceEeCCCCCCchHHHHHHHHhcC-CccEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF--G-VTEFLNPNDNNEPVQQVIKRITDG-GADYS  267 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~--g-~~~~i~~~~~~~~~~~~~~~~~~g-~~d~v  267 (291)
                      +.+|||+|+ |.+|..+++.+...|. +|++++++.++...+ +.+  + -..++..+-.+.+   .+.++..+ .+|+|
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~d~v   84 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN---KLLESIREFQPEIV   84 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHH---HHHHHHHHHCCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCceEEEEccccCHH---HHHHHHHhcCCCEE
Confidence            578999987 9999999999998998 999998876543222 221  1 1122222211122   23333333 68999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      |.+.+.
T Consensus        85 ih~A~~   90 (357)
T 1rkx_A           85 FHMAAQ   90 (357)
T ss_dssp             EECCSC
T ss_pred             EECCCC
Confidence            999883

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=94.50  E-value=0.25  Score=41.68  Aligned_cols=44  Identities=32%  Similarity=0.454  Sum_probs=36.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH-cCCc
Q 022819          196 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA-FGVT  240 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~-~g~~  240 (291)
                      +|.|+|+|.+|...+..+...| . .|+++++++++.+.+.+ +|..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~-~v~~~~r~~~~~~~~~~~~g~~   47 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGAEKRERLEKELGVE   47 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSHHHHHHHHHHTCCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC-eEEEECCCHHHHHHHHHhcCCE
Confidence            5889999999999988888788 7 89999999888877755 5654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=94.49  E-value=0.064  Score=46.74  Aligned_cols=92  Identities=11%  Similarity=0.065  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC--------Cce--EeCCCCCCchHHHHHHHHhc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG--------VTE--FLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g--------~~~--~i~~~~~~~~~~~~~~~~~~  261 (291)
                      .++++||++|+| .|..+..+++..+..+|++++.+++..+.+++.-        .+.  ++.     .+..+.+.. ..
T Consensus        89 ~~~~~VLdiG~G-~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~-----~D~~~~l~~-~~  161 (296)
T 1inl_A           89 PNPKKVLIIGGG-DGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-----ANGAEYVRK-FK  161 (296)
T ss_dssp             SSCCEEEEEECT-TCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHGGG-CS
T ss_pred             CCCCEEEEEcCC-cCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE-----CcHHHHHhh-CC
Confidence            356899999875 3556667777666559999999999888887631        111  221     222222222 23


Q ss_pred             CCccEEEEccC-C----------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIG-D----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g-~----------~~~~~~~~~~l~~~G~i  290 (291)
                      +.+|+|+-... .          ...++.+.+.|+++|.+
T Consensus       162 ~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l  201 (296)
T 1inl_A          162 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVF  201 (296)
T ss_dssp             SCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEE
T ss_pred             CCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEE
Confidence            47998774221 1          46788999999999975

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=94.47  E-value=0.11  Score=48.18  Aligned_cols=98  Identities=15%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhcC
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ...++++++||-+|+|+ |..++++|..++ ..+|+++|.++++++.+++    +|...+....   .+... +.....+
T Consensus       100 ~L~~~~g~~VLDlcaGp-Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~---~Da~~-l~~~~~~  174 (456)
T 3m4x_A          100 AAAAKPGEKVLDLCAAP-GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN---HAPAE-LVPHFSG  174 (456)
T ss_dssp             HHCCCTTCEEEESSCTT-CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC---CCHHH-HHHHHTT
T ss_pred             HcCCCCCCEEEEECCCc-CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe---CCHHH-hhhhccc
Confidence            34578899998887652 344556665543 2389999999999887754    5665322211   12211 2222234


Q ss_pred             CccEEEE---ccCCh-------------------------HHHHHHHHhhccCccc
Q 022819          263 GADYSFE---CIGDT-------------------------GMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~i  290 (291)
                      .||.|+-   |+|.-                         ..+..++++|++||+|
T Consensus       175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~L  230 (456)
T 3m4x_A          175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQL  230 (456)
T ss_dssp             CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            7998775   33321                         4578888999999986

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=94.47  E-value=0.079  Score=45.27  Aligned_cols=93  Identities=19%  Similarity=0.227  Sum_probs=61.9

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC-ceEeCCCCCCchHHHHHHHHhcCCcc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-TEFLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~-~~~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      +.....++.+||-+|+| .|..+..+++ .+. ++++++.+++.++.+++... ..++..+.  .++.     + .+.+|
T Consensus        51 ~~l~~~~~~~vLDiGcG-~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~--~~~~-----~-~~~fD  119 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCG-TGQLTEKIAQ-SGA-EVLGTDNAATMIEKARQNYPHLHFDVADA--RNFR-----V-DKPLD  119 (279)
T ss_dssp             HHHCCCTTCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHCTTSCEEECCT--TTCC-----C-SSCEE
T ss_pred             HHhCCCCCCEEEEecCC-CCHHHHHHHh-CCC-eEEEEECCHHHHHHHHhhCCCCEEEECCh--hhCC-----c-CCCcC
Confidence            44456788999999886 4666677777 677 99999999998888876421 11222211  1110     1 23789


Q ss_pred             EEEEccC-----C-hHHHHHHHHhhccCccc
Q 022819          266 YSFECIG-----D-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g-----~-~~~~~~~~~~l~~~G~i  290 (291)
                      +|+....     . ...+..+.+.|++||++
T Consensus       120 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l  150 (279)
T 3ccf_A          120 AVFSNAMLHWVKEPEAAIASIHQALKSGGRF  150 (279)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEcchhhhCcCHHHHHHHHHHhcCCCcEE
Confidence            8886432     1 35688889999999975

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=94.47  E-value=0.25  Score=43.31  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             EEEEEcCChHHHHH-HHHHHHcCCCeEE-EEcCChhhHHH-HHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          196 TVVIFGLGTVGLSV-AQGAKARGASRII-GVDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       196 ~vlV~G~g~~G~~~-i~~a~~~g~~~vi-~~~~~~~~~~~-a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      +|.|+|+|.+|... +...+..+. .++ +.++++++.+. ++++|....+      .++.+.+.   ...+|+|+.++.
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~-~~vav~d~~~~~~~~~~~~~g~~~~~------~~~~~~l~---~~~~D~V~i~tp   71 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGG-EVVSMMSTSAERGAAYATENGIGKSV------TSVEELVG---DPDVDAVYVSTT   71 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTC-EEEEEECSCHHHHHHHHHHTTCSCCB------SCHHHHHT---CTTCCEEEECSC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCC-eEEEEECCCHHHHHHHHHHcCCCccc------CCHHHHhc---CCCCCEEEEeCC
Confidence            57889999999876 544333777 555 56777777654 4567754222      22222221   126899999998


Q ss_pred             ChHHHHHHHHhhccC
Q 022819          273 DTGMITTALQSCCDV  287 (291)
Q Consensus       273 ~~~~~~~~~~~l~~~  287 (291)
                      .....+.+..+++.|
T Consensus        72 ~~~h~~~~~~al~~G   86 (332)
T 2glx_A           72 NELHREQTLAAIRAG   86 (332)
T ss_dssp             GGGHHHHHHHHHHTT
T ss_pred             hhHhHHHHHHHHHCC
Confidence            877777777777765

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=94.47  E-value=0.14  Score=49.22  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh---------hhHH----HHHHcCCceEeCCCCCC--chHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP---------EKCE----KAKAFGVTEFLNPNDNN--EPVQQVI  256 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~---------~~~~----~a~~~g~~~~i~~~~~~--~~~~~~~  256 (291)
                      .++++||.|+ +++|++++..+...|+ +|++.+++.         ++.+    .+++.|...+.|..+.+  ..+.+.+
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~   85 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA   85 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence            4678888887 8999999999999999 899887653         3333    22334544455554321  1222333


Q ss_pred             HHHhcCCccEEEEccCC
Q 022819          257 KRITDGGADYSFECIGD  273 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g~  273 (291)
                      .+. .|++|+++++.|.
T Consensus        86 ~~~-~G~iDiLVnNAGi  101 (604)
T 2et6_A           86 VKN-FGTVHVIINNAGI  101 (604)
T ss_dssp             HHH-HSCCCEEEECCCC
T ss_pred             HHH-cCCCCEEEECCCC
Confidence            222 2579999999884

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=94.46  E-value=0.069  Score=46.79  Aligned_cols=71  Identities=15%  Similarity=0.194  Sum_probs=46.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|||+|+ |.+|..+++.+...|. +|++++++.++.+.+...++..+ .|..+  .   +.+.+... ++|+||.+.+.
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d--~---~~~~~~~~-~~d~vih~a~~   87 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPECRVAEMLD--H---AGLERALR-GLDGVIFSAGY   87 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCEEEECCTTC--H---HHHHHHTT-TCSEEEEC---
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeEEEEecCCC--H---HHHHHHHc-CCCEEEECCcc
Confidence            7999987 9999999999999998 99999887765443332233322 23322  2   23444333 68999999874

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=94.46  E-value=0.064  Score=51.71  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=46.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC---------ChhhHH----HHHHcCCceEeCCCCCCchHHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT---------NPEKCE----KAKAFGVTEFLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~---------~~~~~~----~a~~~g~~~~i~~~~~~~~~~~~~~~  258 (291)
                      .++++||.|+ +++|.+++..+...|+ +|+++++         +.++.+    .+++.+...+.|..+ ..+..+.+.+
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d-~~~~~~~~~~   95 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS-VIDGAKVIET   95 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCCC-GGGHHHHHC-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC-HHHHHHHHHH
Confidence            5788999987 8999999999999999 8988876         444333    233445555566543 2333333333


Q ss_pred             Hhc--CCccEEEEccCC
Q 022819          259 ITD--GGADYSFECIGD  273 (291)
Q Consensus       259 ~~~--g~~d~vld~~g~  273 (291)
                      ...  +.+|+++++.|.
T Consensus        96 ~~~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           96 AIKAFGRVDILVNNAGI  112 (613)
T ss_dssp             ---------CEECCCCC
T ss_pred             HHHHCCCCcEEEECCCC
Confidence            322  378999999885

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=94.43  E-value=0.12  Score=46.97  Aligned_cols=91  Identities=15%  Similarity=0.176  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHhcCCcc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~-~~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      .+++++||-+|+| .|..++.+|+ .|+ .|+++|.+++.++++++    .|.. .+. .    .+..+.+..+ .+.||
T Consensus       212 ~~~g~~VLDlg~G-tG~~sl~~a~-~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~-~----~D~~~~l~~~-~~~fD  282 (393)
T 4dmg_A          212 VRPGERVLDVYSY-VGGFALRAAR-KGA-YALAVDKDLEALGVLDQAALRLGLRVDIR-H----GEALPTLRGL-EGPFH  282 (393)
T ss_dssp             CCTTCEEEEESCT-TTHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEE-E----SCHHHHHHTC-CCCEE
T ss_pred             hcCCCeEEEcccc-hhHHHHHHHH-cCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEE-E----ccHHHHHHHh-cCCCC
Confidence            3469999998775 3445555555 488 59999999999888865    2443 233 1    3344444443 23599


Q ss_pred             EEEEccCC---------------hHHHHHHHHhhccCccc
Q 022819          266 YSFECIGD---------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~---------------~~~~~~~~~~l~~~G~i  290 (291)
                      +|+-....               ...+..+++.|++||.+
T Consensus       283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~L  322 (393)
T 4dmg_A          283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFL  322 (393)
T ss_dssp             EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            87753222               25677889999999976

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=94.42  E-value=0.12  Score=42.52  Aligned_cols=97  Identities=12%  Similarity=0.046  Sum_probs=59.3

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhH----HHHHHcCCceEeCCCCCCchHHHHHHHHhcCCc
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC----EKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~----~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      ..++++++||-+|+| .|..+..+++..+..+|+++|.+++.+    +.+++..-...+..+.  .... .... ..+.+
T Consensus        53 ~~~~~g~~VLDlGcG-tG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~--~~~~-~~~~-~~~~f  127 (210)
T 1nt2_A           53 LKLRGDERVLYLGAA-SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA--SKPW-KYSG-IVEKV  127 (210)
T ss_dssp             CCCCSSCEEEEETCT-TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT--TCGG-GTTT-TCCCE
T ss_pred             cCCCCCCEEEEECCc-CCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCC--CCch-hhcc-cccce
Confidence            456889999999986 466777788776533899999998743    3344332111222211  1100 0000 12479


Q ss_pred             cEEEEccCChH----HHHHHHHhhccCccc
Q 022819          265 DYSFECIGDTG----MITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld~~g~~~----~~~~~~~~l~~~G~i  290 (291)
                      |+|+-....+.    .+..+.+.|++||++
T Consensus       128 D~V~~~~~~~~~~~~~l~~~~r~LkpgG~l  157 (210)
T 1nt2_A          128 DLIYQDIAQKNQIEILKANAEFFLKEKGEV  157 (210)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             eEEEEeccChhHHHHHHHHHHHHhCCCCEE
Confidence            99887654432    267788999999986

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=94.39  E-value=0.09  Score=41.46  Aligned_cols=92  Identities=15%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc--e-EeCCCCCCchHHHHHHHHhcCC
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT--E-FLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~--~-~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      ..++++||-+|+| .|..++.+++. +..++++++.+++.++.+++    .+..  . ++.     .++.+.+.. ..+.
T Consensus        29 ~~~~~~vLDlGcG-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~-~~~~  100 (177)
T 2esr_A           29 YFNGGRVLDLFAG-SGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK-----MEAERAIDC-LTGR  100 (177)
T ss_dssp             CCCSCEEEEETCT-TCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC-----SCHHHHHHH-BCSC
T ss_pred             hcCCCeEEEeCCC-CCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE-----CcHHHhHHh-hcCC
Confidence            5678899999876 35555666665 54599999999998888765    2332  1 222     233332222 2347


Q ss_pred             ccEEEEccCC-----hHHHHHHH--HhhccCccc
Q 022819          264 ADYSFECIGD-----TGMITTAL--QSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g~-----~~~~~~~~--~~l~~~G~i  290 (291)
                      +|+|+-...-     +..++...  +.|+++|.+
T Consensus       101 fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l  134 (177)
T 2esr_A          101 FDLVFLDPPYAKETIVATIEALAAKNLLSEQVMV  134 (177)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEE
Confidence            9988864221     23344444  677888875

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=94.38  E-value=0.13  Score=45.66  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=28.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK  230 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~  230 (291)
                      .+|||+|+ |.+|..+++.+...|. +|++++++.++
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   37 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRASS   37 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC----
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence            57999987 9999999999888998 99999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	7e-40
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	1e-39
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	1e-37
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	4e-35
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	2e-33
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-27
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	6e-27
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	8e-27
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	9e-26
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	1e-25
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	3e-25
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	3e-20
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	1e-19
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	2e-19
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	3e-19
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	6e-17
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	1e-16
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	6e-16
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	7e-15
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	5e-14
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	8e-14
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	1e-11
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	1e-11
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	3e-11
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	7e-11
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	9e-10
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	1e-09
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	1e-07
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	5e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	5e-06
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	8e-06
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	1e-05
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	2e-04
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	5e-04
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	0.002
d2g5ca2	171	c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {	0.003
d1v3va1	147	b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hyd	0.003

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  135 bits (341), Expect = 7e-40
 Identities = 75/197 (38%), Positives = 106/197 (53%), Gaps = 3/197 (1%)

Query: 7   QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRI 66
             +VI CKAAVAW A +PLV+EE+EV+ P   EIRIK++ T +C +D+            
Sbjct: 3   VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGF 62

Query: 67  F---GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV 123
               GHE +GIVESVGPGVTEF  GE V+ +FI +C  CR C+S K+N C          
Sbjct: 63  PVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPD 122

Query: 124 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 183
           + S ++TRF+ KG+ V  +   S+FS+YTVV+     K+     L++       L +   
Sbjct: 123 VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVND 182

Query: 184 AAWNVADISKGSTVVIF 200
           A   +       TV+  
Sbjct: 183 AIDLMKHGKCIRTVLSL 199

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  134 bits (339), Expect = 1e-39
 Identities = 71/194 (36%), Positives = 109/194 (56%), Gaps = 3/194 (1%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---TQAIFPR 65
           +VI CKAAVAW AG+PL +EE+EV PP+  E+RIK++ T++C +D         +  FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62

Query: 66  IFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 125
           I GH  +GIVESVG GVT+   G+ V+ ++I +C  C+ C + K+N C+ + + +   + 
Sbjct: 63  ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 122

Query: 126 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 185
            D  +RF+ KGK + HY   S+FSEYTVV      K+  +  +++    +        A 
Sbjct: 123 PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAF 182

Query: 186 WNVADISKGSTVVI 199
             +       TVV 
Sbjct: 183 ELMHSGKSIRTVVK 196

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  130 bits (327), Expect = 1e-37
 Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 12/203 (5%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIF- 67
           + ITCKAAVAW   +PL +E + V PP+  E+RIK++ + +C SD +  +          
Sbjct: 5   KDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVI 64

Query: 68  -GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHEA G+VES+G GVT    G+ V+ +F+ +C +CR CKS  SN CE   +  +  + +
Sbjct: 65  LGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMA 124

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
           D  +RF+ +GKP+Y+    S+F+EYTVV      K+     +  +      L        
Sbjct: 125 DMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL-------- 176

Query: 187 NVADISKGSTVVIFGLGTVGLSV 209
               I+K   ++  G G   + +
Sbjct: 177 --DQINKAFELLSSGQGVRSIMI 197

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  123 bits (310), Expect = 4e-35
 Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 9/199 (4%)

Query: 7   QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQAIFP 64
           Q +VI CKAA+AW  G PL +EE+EV+PP+  E+RI+V+ T +C +D   T  + +A+FP
Sbjct: 3   QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFP 62

Query: 65  RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVL----GLER 120
            + GHE +GIVESVGPGVT F  G+ V+  F  +CK C+ C S  +N C  L        
Sbjct: 63  VVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTI 122

Query: 121 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA 180
              +  D+ +RF+ KG+ +YH+  VSSFS+YTVV      +V     L+ +   +    +
Sbjct: 123 DQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFES 182

Query: 181 GLGAAWNVADISKGSTVVI 199
              A   +  + +G ++  
Sbjct: 183 INDA---IDLMKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  118 bits (297), Expect = 2e-33
 Identities = 69/195 (35%), Positives = 99/195 (50%), Gaps = 5/195 (2%)

Query: 9   QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRI-- 66
           +VI CKAAV W   +P  +EEVEV PP+  E+RIK+V T +CRSD        + P    
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHEA+GIVES+G GVT    G+ V+ +F  +C  CR CK  + N C    L        
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
           D  +RF+ +GKP++H+   S+FS+YTVV      K+ +   L+    L   +        
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALD---PLITHVLPFEKINE 181

Query: 187 NVADISKGSTVVIFG 201
               +  G ++    
Sbjct: 182 GFDLLRSGESIRTIL 196

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  102 bits (254), Expect = 3e-27
 Identities = 61/120 (50%), Positives = 75/120 (62%), Gaps = 1/120 (0%)

Query: 166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 225
           APLE  CL+ CG + G GAA N A ++ GST  +FGLG VG S   G KA GASRIIGV 
Sbjct: 1   APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59

Query: 226 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
           T+ +K  KA   G TE LNP D ++P+ +VI   T+GG DY+ EC G    +  ALQS  
Sbjct: 60  THKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTY 119

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score =  101 bits (253), Expect = 6e-27
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 30/217 (13%)

Query: 12  TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--TQAIFPRIFGH 69
              AAV    G    ++ +++  PQ +E+ +KVV T +C +D+   +       P + GH
Sbjct: 3   DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGH 62

Query: 70  EASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 129
           E SGI+E++GP VTE   G+HV+ +  G C  C QC +     C            S+  
Sbjct: 63  EGSGIIEAIGPNVTELQVGDHVV-LSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGN 121

Query: 130 TRFSIKGK--PVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
                  +     H+ A SSF+ Y +      VKV+   P +++                
Sbjct: 122 HALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQL---------------- 165

Query: 188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGV 224
                    V  +    +  +     K      II +
Sbjct: 166 ---------VKFYAFDEINQAAIDSRKGITLKPIIKI 193

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  101 bits (251), Expect = 8e-27
 Identities = 59/120 (49%), Positives = 76/120 (63%)

Query: 166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 225
           AP EK+CL+ CG S G GAA     +  GST V+FGLG VGLSV  G K+ GASRIIG+D
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 226 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            N +K EKA A G TE ++P D+ +P+ +V+  +T     Y+FE IG    +  AL SC 
Sbjct: 62  LNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCH 121

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 98.5 bits (244), Expect = 9e-26
 Identities = 60/120 (50%), Positives = 76/120 (63%)

Query: 166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 225
           A LE++CL+ CG S+G GAA N A ++ GST  +FGLG VGLS   G K  GASRII +D
Sbjct: 1   ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60

Query: 226 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            N EK  KAKA G T+ LNP + ++PVQ VI  +T GG DYS +C G    +  A+    
Sbjct: 61  INGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 98.1 bits (243), Expect = 1e-25
 Identities = 63/121 (52%), Positives = 84/121 (69%)

Query: 166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 225
           +PLEK+CL+ CG S G G+A  VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD
Sbjct: 1   SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60

Query: 226 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            N +K  KAK  G TE +NP D  +P+Q+V+  +++GG D+SFE IG    + TAL  C 
Sbjct: 61  INKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120

Query: 286 D 286
           +
Sbjct: 121 E 121

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 3e-25
 Identities = 66/121 (54%), Positives = 86/121 (71%)

Query: 166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 225
           APL+K+CLL CG+S G GAA N A +  GS   +FGLG VGL+V  G K  GASRIIGVD
Sbjct: 1   APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60

Query: 226 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            N +K  +AK FG TE +NP D ++P+Q+V+  +TDGG DYSFECIG+  ++  AL++C 
Sbjct: 61  INKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120

Query: 286 D 286
            
Sbjct: 121 K 121

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 83.9 bits (206), Expect = 3e-20
 Identities = 65/121 (53%), Positives = 88/121 (72%)

Query: 166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 225
           APL+ +CLL CG+S G GAA N A +  GST  +FGLG VGL+   G  + GA RII VD
Sbjct: 1   APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60

Query: 226 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
            NP+K EKAK FG T+F+NPND++EP+ QV+ ++T+GG D+S EC+G+ G++  AL+SC 
Sbjct: 61  LNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120

Query: 286 D 286
            
Sbjct: 121 K 121

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 81.9 bits (201), Expect = 1e-19
 Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT 226
           P+E +  L CG+  G GA  N   ++  S+ V +G G VGLS    AK  GAS II VD 
Sbjct: 2   PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61

Query: 227 NPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 285
              + E AK  G T  +N     +     IK ITDGG +++ E  G   ++   + +  
Sbjct: 62  VESRLELAKQLGATHVINSKT--QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALG 118

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 81.9 bits (201), Expect = 2e-19
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 18/190 (9%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASG 73
           KA  A+ A QPL   ++    P P +++I++    +C SD+    ++             
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61

Query: 74  IVESV---GPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 129
           IV  V   G  V ++  G+ V +   +  CK C +C+    N C+ +             
Sbjct: 62  IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPT----- 116

Query: 130 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNV 188
                   P      +  +S+  VVH    +++  +   + +   ++      L      
Sbjct: 117 --------PDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDVKY 168

Query: 189 ADISKGSTVV 198
             +    T+ 
Sbjct: 169 RFVIDNRTLT 178

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 81.1 bits (199), Expect = 3e-19
 Identities = 47/195 (24%), Positives = 72/195 (36%), Gaps = 32/195 (16%)

Query: 12  TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE----TQAIFPRIF 67
           T KAAV    G PL +EEV+V  P P ++ +K+  + +C +D+ A E     +   P I 
Sbjct: 5   TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 64

Query: 68  GHEASGIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
           GHE  G V +VG GVT   EG+ V +      C  C  C +     CE            
Sbjct: 65  GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCES----------- 113

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
                     +    Y     ++EY +        +    P      +  G    +    
Sbjct: 114 ----------QQNTGYSVNGGYAEYVLADPNYVGIL----PKNVKATIHPGKLDDINQIL 159

Query: 187 NV--ADISKGSTVVI 199
           +   A   +G  V+ 
Sbjct: 160 DQMRAGQIEGRIVLE 174

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 74.9 bits (183), Expect = 6e-17
 Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 28/199 (14%)

Query: 11  ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET---QAIFPRIF 67
           +   A V     QPLV +E E++      I ++++   +C SD+  +     +   P I 
Sbjct: 3   LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 62

Query: 68  GHEASGIVESVGPGVTEFNEGE-----HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRG 122
           GHE +G V  V     + N         ++      C  C  CK  K             
Sbjct: 63  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYL--------- 113

Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAG 181
                 +  + I      +      +S + V+      +KVS          L       
Sbjct: 114 ---CPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRL--PLKEAN--- 165

Query: 182 LGAAWNVADISKGSTVVIF 200
              A  + +  +   V+++
Sbjct: 166 --KALELMESREALKVILY 182

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 74.2 bits (181), Expect = 1e-16
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 35/198 (17%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-----------TQAI 62
           +A      G+PL ++E+ V  P+  ++ IKV    +C SD+   +               
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 63  FPRIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRG 122
            P   GHE +G +E VG  V  +++G+ V          C  C+  + + C+        
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR----- 116

Query: 123 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV-HSGCAVKVSSIAPLEKICLLSCGLSAG 181
                                   +++EY +V H     K+  + P+    +     +  
Sbjct: 117 ----------------WLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEA 160

Query: 182 LGAAWNVADISKGSTVVI 199
           +    N   I  G  V+I
Sbjct: 161 IDNLENFKAI--GRQVLI 176

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (176), Expect = 6e-16
 Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 16/185 (8%)

Query: 20  GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---TQAIFPRIFGHEASGIVE 76
              +     + +  P    +I IK+    +C SDI            P + GHE  G V 
Sbjct: 16  EDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVV 75

Query: 77  SVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKG 136
            +GP      +    + V   +  +C +C              +        +   +   
Sbjct: 76  KLGPKSNSGLKVGQRVGVGA-QVFSCLECDRC-----------KNDNEPYCTKFVTTYSQ 123

Query: 137 KPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGST 196
                Y +   ++ Y  VH    V +     +E + +   G+           D+    T
Sbjct: 124 PYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAF-ERMEKGDVRYRFT 182

Query: 197 VVIFG 201
           +V + 
Sbjct: 183 LVGYD 187

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 69.5 bits (169), Expect = 7e-15
 Identities = 41/216 (18%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 14  KAAVAWGAGQPLVVEEVEV-------NPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRI 66
           +  V  G+G+ + V++++               + +KVV T++C SD      +      
Sbjct: 3   RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 61

Query: 67  F--GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 124
              GHE +G V   G  V     G+ V   F   C  CR CK   +  C  +   R G  
Sbjct: 62  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGA 121

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS--GCAVKVSSIAPLEKICLLSCGLSAGL 182
           +          G            +EY +V       +K+       +   ++  +   +
Sbjct: 122 YGYVDMGDWTGG-----------QAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQV 170

Query: 183 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA 218
            +  + A    G     F  G     V    K   A
Sbjct: 171 ISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 66.9 bits (162), Expect = 5e-14
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 28/193 (14%)

Query: 15  AAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE------TQAIFPRIFG 68
           +AV +     L +E+  +  P+ +E+ +++    +C SD+  +E           P + G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 69  HEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 128
           HEASG V  VG  V    +G+ V       C+ C+ CK  K N C               
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC--------------- 107

Query: 129 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 188
                             + + Y V  +    K+     ++++   S  L   +  A+  
Sbjct: 108 -----PDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFEA 161

Query: 189 ADISKGSTVVIFG 201
           A     +T+ +  
Sbjct: 162 ARKKADNTIKVMI 174

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 65.8 bits (159), Expect = 8e-14
 Identities = 44/195 (22%), Positives = 67/195 (34%), Gaps = 34/195 (17%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIF----GH 69
           KAAV     +PL ++EVE       E+ +++    +C +D+ A               GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 70  EASGIVESVGPGVTEFNEGEHVLTVFIGECK-TCRQCKSDKSNTCEVLGLERRGVMHSDQ 128
           E  GIVE VGPGVT    G+ V   ++      C  C S +   CE              
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE-------------- 107

Query: 129 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL--LSCGLSAGLGAAW 186
                   +    Y     ++EY    +   VK+     +E   L  ++      L    
Sbjct: 108 -------HQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINEVFDRMLKGQI 160

Query: 187 NVADISKGSTVVIFG 201
           N      G  V+   
Sbjct: 161 N------GRVVLTLE 169

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 1e-11
 Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 31/201 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI------FPRIF 67
            + V  G G  L +E   +  P P E+ +++    +C SD+  WE   I       P + 
Sbjct: 9   LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 127
           GHEASG VE VG  V     G+ V        +    CK  + N                
Sbjct: 68  GHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLS-------------- 113

Query: 128 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 187
                              +   +   ++    K+               L   L  A+ 
Sbjct: 114 ------PSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRF--PLEKAL-EAFE 164

Query: 188 VADISKGSTVVIFGLGTVGLS 208
                 G  +++        +
Sbjct: 165 TFKKGLGLKIML-KCDPSDQN 184

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 59.6 bits (143), Expect = 1e-11
 Identities = 36/201 (17%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAI---FPRIFGHE 70
           K     G  + L   E E       +  ++ +  S C SDI      A+      I GHE
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60

Query: 71  ASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 130
           A G V  VG  V +F  G+ V+           + ++        +    +     D   
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV- 119

Query: 131 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD 190
                            F EY  V+        ++A L K   LS  ++       ++  
Sbjct: 120 -----------------FGEYFHVNDADM----NLAILPKDVDLSKLVTHVYHGFDHI-- 156

Query: 191 ISKGSTVVIFGLGTVGLSVAQ 211
                 +++       L  A 
Sbjct: 157 ---EEALLLMKDKPKDLIKAV 174

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 58.5 bits (140), Expect = 3e-11
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 30/193 (15%)

Query: 14  KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWE------TQAIFPRI 66
           KAA      +PL +E+V+        ++ +++    +C +D+   +       Q   P  
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 67  FGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 126
            GHE  G +E V  GV    +G+ V+        TC  C++ +   CE            
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCEN----------- 109

Query: 127 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 186
                                F+E+        +K+     +E        ++  L    
Sbjct: 110 ----------LEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLE 159

Query: 187 NVADISKGSTVVI 199
              ++  G  V+I
Sbjct: 160 K-GEV-LGRAVLI 170

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 57.9 bits (139), Expect = 7e-11
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 227
           +  +  LS  L  G   A   A +  GSTV + G G VGL+ A  A+  GA+ +I  D N
Sbjct: 1   IRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59

Query: 228 PEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 272
           P +   AKA G        D   P+ + I  +      D + + +G
Sbjct: 60  PARLAHAKAQGFEIADLSLD--TPLHEQIAALLGEPEVDCAVDAVG 103

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 9e-10
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 174 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 233
           LS G+      A     ++ G  V++ G G +G+     AKA GA++++  D +  +  K
Sbjct: 12  LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66

Query: 234 AKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCC 285
           AK  G    L  +  +            G   + + EC G    I   + +  
Sbjct: 67  AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATR 119

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT 226
           PLE   +++  ++ G   A  +ADI  GS+VV+ G+G VGL    GAK RGA RIIGV +
Sbjct: 2   PLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60

Query: 227 NPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
            P   E AK +G T+ LN  + +    QV+K     G D      G +  ++ A++  
Sbjct: 61  RPICVEAAKFYGATDILNYKNGHIE-DQVMKLTNGKGVDRVIMAGGGSETLSQAVKMV 117

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 162 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRI 221
           +S    +E   L   G++A          +  G+ V I G+G +G    Q  K    + +
Sbjct: 1   ISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATV 60

Query: 222 IGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTAL 281
           I +D   EK + A+  G    ++     +PV+QV++     G + + + +G    +    
Sbjct: 61  IALDVKEEKLKLAERLGADHVVDARR--DPVKQVMELTRGRGVNVAMDFVGSQATVDYTP 118

Query: 282 QSC 284
              
Sbjct: 119 YLL 121

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGH 69
          KA V    G PL + ++     +  E+ ++V    L  +D        +       
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPF 57

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.8 bits (102), Expect = 5e-06
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 227
           L+ + +  C  +    A     +   G TVVI G G +GL     A++ GA  +I +  +
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62

Query: 228 PEKCEKAKAFGVTEFLNPNDNN--EPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 284
           P + + A+  G    LN  + +  E  + ++      GAD+  E  GD+  +    +  
Sbjct: 63  PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELL 121

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 43.2 bits (100), Expect = 8e-06
 Identities = 23/209 (11%), Positives = 44/209 (21%), Gaps = 42/209 (20%)

Query: 10  VITCKAAVAWGAGQP---LVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWETQAIFP 64
           +IT +A +    G+P   L  +  E++       E+ +K + + +  SDI   +      
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 65  RIFGHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 124
                       +   G     E   V +             S  +              
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTW--------RT 112

Query: 125 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 184
           H+       IK        A    +  T                                
Sbjct: 113 HALGNDDDFIKLPNPAQSKANGKPNGLTDAK---------------------------SI 145

Query: 185 AWNVADISKGSTVVIFGLGT--VGLSVAQ 211
                       +   G+     G  +  
Sbjct: 146 ETLYDGTKPLHELYQDGVANSKDGKQLIT 174

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 174 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 233
           LS G+      A   A +  G+TV++ G G +GL     AKA GA  +    +   + E 
Sbjct: 12  LSVGV-----HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR-RLEV 65

Query: 234 AKAFGVTEFLNPNDNNEPVQQVIKR---ITDGGADYSFECIGDTGMITTALQSCC 285
           AK  G    L  +   E    +I+R         + + +C G+   IT  +    
Sbjct: 66  AKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITR 120

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 14  KAAVAWGAGQPLV---VEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIF--- 67
           +A   +  G P V     ++ V  P+  ++ IKV    +   +            +    
Sbjct: 4   RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 63

Query: 68  -GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTC 113
            G + +G++E+VG   + F +G+ V T             +      
Sbjct: 64  PGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVY 110

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 4/94 (4%)

Query: 12  TCKAAVAWGAGQPLVVE--EVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQAIFPRIF 67
             +A V              + ++     ++ ++V  +S+   D   +  + + +    F
Sbjct: 3   AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPF 62

Query: 68  GHEASGIVESVGPGVTEFNEGEHVLTVFIGECKT 101
                     V      F EG+ V+        T
Sbjct: 63  VPGIDLAGVVVSSQHPRFREGDEVIATGYEIGVT 96

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 180 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 239
           A   +   +       T  + G G VGL   +     GA + + V  +            
Sbjct: 22  ASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGESDGSIWNPDGIDP 80

Query: 240 TEFLNPNDNNEPVQQVIKRITDGGADYSFEC 270
            E  +    +  +    K     G+    +C
Sbjct: 81  KELEDFKLQHGTILGFPKAKIYEGSILEVDC 111

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 196 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAK 235
            V+I G+G +G S A+  +  G   +I G D NPE   KA 
Sbjct: 3   NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV 43

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 27 VEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEFN 86
          ++ VE+ P +  E+ ++ +  S+      A +       + G + + +VES     + F 
Sbjct: 24 LKTVELPPLKNGEVLLEALFLSVDPYMRIASKRLKEGAVMMGQQVARVVES---KNSAFP 80

Query: 87 EGEHVLTVF 95
           G  VL   
Sbjct: 81 AGSIVLAQS 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.98
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.98
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.97
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.97
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.97
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.97
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.96
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.94
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.94
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.91
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.9
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.89
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.89
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.89
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.89
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.88
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.88
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.88
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.87
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.87
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.86
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.86
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.85
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.84
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.84
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.84
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.83
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.83
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.82
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.82
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.82
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.82
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.78
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.78
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.78
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.77
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.74
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.71
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.66
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.66
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.65
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.42
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.72
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.64
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.59
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.52
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.46
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.45
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.43
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.32
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.3
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.22
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.2
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.19
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.19
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.18
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.14
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.08
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.06
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.05
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.03
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.02
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.02
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.01
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.99
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.97
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.96
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.96
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.95
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.94
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.94
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.93
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.91
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.89
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.87
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.87
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.87
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.87
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.81
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.8
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	96.77
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.76
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.75
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.73
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.72
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.7
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.7
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.7
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.7
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.69
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.68
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.66
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.65
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.64
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.64
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.63
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.63
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.62
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.59
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.57
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.57
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.56
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.56
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.55
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.55
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.54
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.53
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.53
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.52
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.52
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.5
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.43
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.42
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.42
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.39
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.38
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.37
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.36
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.36
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.31
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.3
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.18
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.16
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.11
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.11
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.06
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.03
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.0
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.97
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.93
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	95.92
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.9
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.78
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	95.77
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.72
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.64
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.61
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.61
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.6
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.52
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.39
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.36
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.34
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.31
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.29
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.26
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.25
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.1
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.07
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	95.07
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.87
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.78
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.72
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.65
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.64
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.63
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.59
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.56
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	94.54
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	94.52
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.48
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	94.47
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	94.46
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	94.38
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.31
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	94.3
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.19
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.16
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.14
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.11
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.09
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.05
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.02
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	93.95
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	93.91
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.88
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.86
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.83
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.81
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	93.8
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.7
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.65
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.5
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.45
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.37
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.35
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.33
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	93.28
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.23
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.13
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	93.1
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.1
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.08
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.04
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.03
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.9
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	92.79
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	92.79
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.69
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	92.67
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	92.63
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	92.59
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	92.51
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.33
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.3
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	92.27
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.24
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.21
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.13
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.11
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.99
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.94
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.84
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.82
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	91.81
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	91.81
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.76
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.71
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.68
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.58
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	91.53
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.5
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.44
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	91.41
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	91.28
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.28
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.27
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.26
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	91.2
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	91.11
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	91.04
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	90.98
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.9
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	90.79
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	90.75
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.74
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	90.64
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	90.64
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	90.57
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.49
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	90.41
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.41
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.29
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	90.26
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	90.2
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.2
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	90.17
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	90.12
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	90.07
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	90.01
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	90.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.92
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.91
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	89.85
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	89.81
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	89.74
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	89.73
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	89.63
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	89.63
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	89.6
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.5
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	89.48
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	89.46
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.41
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	89.29
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	89.25
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.24
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.22
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	89.2
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.17
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	89.07
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.03
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	89.01
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	88.97
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	88.67
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	88.59
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	88.36
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.34
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	88.26
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.24
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.11
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	88.11
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.08
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	88.07
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	88.02
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.81
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.67
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.62
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.62
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	87.37
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	87.17
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.16
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	86.94
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.58
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	86.51
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	86.44
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.25
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	86.21
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.15
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.1
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.98
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.94
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.47
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.46
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	85.35
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.16
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	85.13
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	85.11
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.04
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	84.89
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.81
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	84.73
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	84.72
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	84.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.66
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.59
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	84.55
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	84.44
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	84.32
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	84.01
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	84.01
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.97
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	83.87
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	83.31
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	83.19
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.09
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.07
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	82.93
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.9
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.81
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	82.72
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	82.6
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	82.48
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	82.42
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.17
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	81.87
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.68
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	81.67
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	81.61
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.41
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	81.21
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	81.01
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	80.92
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	80.88
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	80.76
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	80.65
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.6
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	80.58
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	80.52
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	80.3
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	80.18
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	80.09
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	80.07
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.07

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=2.9e-37  Score=258.10  Aligned_cols=193  Identities=40%  Similarity=0.642  Sum_probs=176.8

Q ss_pred             CcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCC
Q 022819            8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      +.++++||++++++++|++++|++.|+|+++||||||.+++||++|++.+.+..   .+|.++|||++|+|+++|+++.+
T Consensus         4 ~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v~~   83 (199)
T d1cdoa1           4 GKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTE   83 (199)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCCce
Confidence            456899999999999999999999999999999999999999999999998865   67899999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      |++||||++.+..+|+.|.+|+.+++++|.+...+...-...++..++..++....+..+.|+|+||++++.+++++||+
T Consensus        84 ~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~  163 (199)
T d1cdoa1          84 FQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDP  163 (199)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCT
T ss_pred             ecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECCC
Confidence            99999999999999999999999999999998776555444677777777777777777778999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF  200 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~  200 (291)
                      ++++++++++.+++.|++.++....+.+.+++|||+
T Consensus       164 ~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         164 SVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             TSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999999999999888899999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=249.84  Aligned_cols=192  Identities=37%  Similarity=0.658  Sum_probs=169.9

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      ..|+|||++++++++||+++++|+|+|+++||||||+++|||++|+++++|.+   .+|+++|||++|+|+++|+++..+
T Consensus         3 ~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~~   82 (197)
T d2fzwa1           3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKL   82 (197)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             CceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCceec
Confidence            45899999999999999999999999999999999999999999999999876   789999999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||||++.+..+|+.|..|..++++.|.............+...++..+|..+.++.+.|+|+||.+++..+++++|++
T Consensus        83 ~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~~  162 (197)
T d2fzwa1          83 KAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPL  162 (197)
T ss_dssp             CTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTT
T ss_pred             CCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECCCC
Confidence            99999999999999999999999999998765543222225666666677777777777789999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF  200 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~  200 (291)
                      ++++++|.+.+++.|++.++.....-+.+++|||+
T Consensus       163 l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         163 IKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             SCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            99999999999999999887555556788999874

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=3.1e-35  Score=246.37  Aligned_cols=191  Identities=39%  Similarity=0.719  Sum_probs=165.1

Q ss_pred             CCcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCC
Q 022819            7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      +..+|||||++++++++|++++++|.|+|+++||||||++++||++|+++++|.+  .+|.++|||++|+|+++|+++++
T Consensus         3 ~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~~~P~v~GHE~~G~V~~vG~~V~~   82 (202)
T d1e3ia1           3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVTN   82 (202)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecccccccccccccceEEeeecCCcee
Confidence            4567999999999999999999999999999999999999999999999999877  67899999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCcccccccccc----ccccCCcccceeccCCccccccCccceeeEEEeeccceE
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR----GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~----g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  160 (291)
                      |++||||++.+...|+.|.+|..++++.|........    +....++..++..+|...+++.+.|+|+||++++..+++
T Consensus        83 ~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l~  162 (202)
T d1e3ia1          83 FKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLA  162 (202)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEE
T ss_pred             ccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhEE
Confidence            9999999999999999999999999999987665321    112234444556677777777777899999999999999


Q ss_pred             ECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE
Q 022819          161 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF  200 (291)
Q Consensus       161 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~  200 (291)
                      ++|++++++.++.+.+++.+.+.++.   .+++|++|.|+
T Consensus       163 ~lP~~~~~~~~~~~~~~~~~~~~a~~---~~k~G~~V~vi  199 (202)
T d1e3ia1         163 RVDDEFDLDLLVTHALPFESINDAID---LMKEGKSIRTI  199 (202)
T ss_dssp             ECCTTSCGGGGEEEEEEGGGHHHHHH---HHHTTCCSEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEE
Confidence            99999999988888888888777653   24689988776

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=6.6e-35  Score=242.50  Aligned_cols=187  Identities=28%  Similarity=0.508  Sum_probs=156.1

Q ss_pred             eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        11 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      ++|+|.++.+.++||+++++|.|+|+++||||||.+++||++|++++.|.+  ++|.++|||++|+|+++|+++++|++|
T Consensus         2 k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~~~P~i~GHE~~G~V~~vG~~v~~~~vG   81 (194)
T d1f8fa1           2 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVG   81 (194)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             ceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccccCCcccccceEEEeeecCccceeEccC
Confidence            468999999999999999999999999999999999999999999999887  689999999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceecc--CCccccccCccceeeEEEeeccceEECCCC
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIK--GKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      |||+. +..+|+.|.+|.+++++.|++.... ..|.+ .+|..++...  +....++.+.|+|+||..++..+++++|++
T Consensus        82 DrVv~-~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~  159 (194)
T d1f8fa1          82 DHVVL-SYGYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKD  159 (194)
T ss_dssp             CEEEE-CCCCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTT
T ss_pred             ceeee-ecccccCChhhhCCCcccccccccceecccc-ccceeeeecCCceeeccccccccccceeEEEehHHEEECCCC
Confidence            99954 5668999999999999999976332 34544 4554443322  223334555689999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGV  224 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~  224 (291)
                      ++++++                         +++.|+|++|++++|+++.+|+.+||++
T Consensus       160 i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         160 FPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            886543                         4456889999999999999999777765

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=4.8e-35  Score=240.43  Aligned_cols=167  Identities=24%  Similarity=0.388  Sum_probs=149.2

Q ss_pred             eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCCCCC
Q 022819           14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTEFNE   87 (291)
Q Consensus        14 ~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~~~~   87 (291)
                      -|.+++++++ |+++++|.|+|+++|||||+++++||++|++++.+..      .+|+++|||++|+|+++|+++++|++
T Consensus         3 maAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~   81 (178)
T d1e3ja1           3 LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK   81 (178)
T ss_dssp             EEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCT
T ss_pred             eEEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCC
Confidence            3455778876 9999999999999999999999999999999887643      56789999999999999999999999


Q ss_pred             CCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           88 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        88 GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      ||||++.+..+|+.|..|.+++++.|+...+  .|....+                  |+|+||+.++.++++++|++++
T Consensus        82 GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~--~~~~~~~------------------G~~aey~~v~~~~~~~iP~~~~  141 (178)
T d1e3ja1          82 GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF--CATPPDD------------------GNLARYYVHAADFCHKLPDNCN  141 (178)
T ss_dssp             TCEEEECCEECCSSSHHHHTTCGGGCTTCEE--TTBTTBC------------------CSCBSEEEEEGGGEEECCTTCC
T ss_pred             CCEEEECcccccCCccccccCCccccccccc--eeccccc------------------cccceeeeecccceeeCCCCCC
Confidence            9999999999999999999999999988776  3333233                  4999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL  202 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~  202 (291)
                      +++++.+.+.+.|+|+++ +.++++++++|+|+|+
T Consensus       142 ~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         142 VKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             HHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            999999999999999985 7889999999999863

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=8e-35  Score=242.82  Aligned_cols=190  Identities=37%  Similarity=0.682  Sum_probs=161.0

Q ss_pred             CcceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCC
Q 022819            8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      .+..||||++++++++|++++++|.|+|+++||||||.+++||++|+++++|..  .+|.++|||++|+|+++|+++.+|
T Consensus         4 ~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~~~P~i~GHE~~G~Vv~~G~~v~~~   83 (198)
T d1p0fa1           4 GKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILGHEAVGVVESIGAGVTCV   83 (198)
T ss_dssp             TSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeeccccccccccceeeeeeeeecCcccccC
Confidence            456899999999999999999999999999999999999999999999998877  789999999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||||++.+..+|+.|.+|+++++++|+...+...+....++..++..++..+++..+.|+|+||+.+++.+++++|++
T Consensus        84 ~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~~  163 (198)
T d1p0fa1          84 KPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPK  163 (198)
T ss_dssp             CTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTT
T ss_pred             cCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCCC
Confidence            99999999999999999999999999999887654433334555566666666666666789999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHH
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGL  207 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~  207 (291)
                      ++.+.++...+.+.+          +.+++.|||.|+|++|+
T Consensus       164 ~~~~~~~~~~~~~~~----------v~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         164 INVNFLVSTKLTLDQ----------INKAFELLSSGQGVRSI  195 (198)
T ss_dssp             SCGGGGEEEEECGGG----------HHHHHHHTTTSSCSEEE
T ss_pred             CCHHHHHHhhcchhh----------cCCCCEEEEECCCcceE
Confidence            997776655443322          23445578888888775

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=7.2e-34  Score=232.74  Aligned_cols=169  Identities=27%  Similarity=0.399  Sum_probs=149.9

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      ++.+|||+++.++++|++++++|.|.|+++||||||++++||++|++.++|.+    .+|.++|||++|+|+++|+++++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~   81 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR   81 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence            67899999999999999999999999999999999999999999999999876    57899999999999999999999


Q ss_pred             CCCCCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECC
Q 022819           85 FNEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS  163 (291)
Q Consensus        85 ~~~GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  163 (291)
                      |++||||++.+. ..|+.|.+|..++++.|+....  .|+. .+                  |+|+||+.++.++++++|
T Consensus        82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~--~G~~-~~------------------gg~aey~~v~~~~~~~iP  140 (175)
T d1llua1          82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN--TGYS-VN------------------GGYAEYVLADPNYVGILP  140 (175)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEECTTTSEECC
T ss_pred             cccCCEEEeccccccCCccccccCCcccccccccc--cccc-cc------------------cccceEEEechHHEEECC
Confidence            999999987654 5799999999999999988776  3433 33                  389999999999999999


Q ss_pred             CCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE
Q 022819          164 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF  200 (291)
Q Consensus       164 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~  200 (291)
                      ++++++.++++...+.|++..+ +.. ..+|++|||+
T Consensus       141 d~l~~~~a~~~~~~~~t~~~~~-~~g-~~~G~~VLVl  175 (175)
T d1llua1         141 KNVKATIHPGKLDDINQILDQM-RAG-QIEGRIVLEM  175 (175)
T ss_dssp             TTCCCCEEEECGGGHHHHHHHH-HTT-CCSSEEEEEC
T ss_pred             CCCChhHHHHHHhHHHHHHHHH-HhC-CCCCCEEEeC
Confidence            9999998888888888888764 333 4479999984

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1.1e-33  Score=230.67  Aligned_cols=163  Identities=22%  Similarity=0.356  Sum_probs=148.4

Q ss_pred             eEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           14 KAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        14 ~a~~~~~~~~~~~~~~~~~~~~-~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      ||+++.++++||++++++.|++ +++||||||.+++||++|++.+.|..      .+|+++|||++|+|+++|+++++|+
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7899999999999999999986 68999999999999999999988765      5789999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||||++.+..+|+.|..|..++++.|+...+  .|+. .+                  |+|+||+.++.++++++|+++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP~~~  139 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF--PGLN-ID------------------GGFAEFMRTSHRSVIKLPKDV  139 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC--BTTT-BC------------------CSSBSEEEECGGGEEECCTTC
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc--ceee-cc------------------cccceeeeehhhcceecCCCC
Confidence            99999999999999999999999999998876  3433 33                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEE
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVI  199 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV  199 (291)
                      +++.++++.+.+.|+|+++ +..++ .|++|||
T Consensus       140 ~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         140 RVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            9998888888999999986 66777 8999987

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=232.34  Aligned_cols=168  Identities=21%  Similarity=0.329  Sum_probs=147.3

Q ss_pred             eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC------CCCcccCcceeEEEEEcCCCCCCC
Q 022819           12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA------IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        12 ~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      +|.|++++++++ ++++++|.|+|+++||||||++++||++|++.+++..      .+|.++|||++|+|+++|+++.+|
T Consensus         7 ~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   85 (185)
T d1pl8a1           7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (185)
T ss_dssp             CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence            678999999976 9999999999999999999999999999999987532      678899999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||||++.+..+|+.|.+|..++++.|+...+  .|....+|                  +|+||+.++.++++++|++
T Consensus        86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~--~g~~~~~G------------------~~aey~~~~~~~~~~lP~~  145 (185)
T d1pl8a1          86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF--CATPPDDG------------------NLCRFYKHNAAFCYKLPDN  145 (185)
T ss_dssp             CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE--TTBTTBCC------------------SCBSEEEEEGGGEEECCTT
T ss_pred             cccccceecceeccccchhhccchhchhcccee--eecccccc------------------cceEEEEEchHHEEECCCC
Confidence            999999999999999999999999999988776  34332333                  8999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCCh
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGT  204 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~  204 (291)
                      +++++|++++  +.+++++ ++..+++++++||| |+|+
T Consensus       146 ~~~~~aa~~p--l~~a~~a-~~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         146 VKPLVTHRFP--LEKALEA-FETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             CGGGEEEEEE--GGGHHHH-HHHHHTTCCSEEEE-ECCT
T ss_pred             CCHHHHHHHH--HHHHHHH-HHHhCCCCCCEEEE-EeCC
Confidence            9999987654  4567765 46778899999988 5554

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=7.5e-33  Score=231.00  Aligned_cols=189  Identities=37%  Similarity=0.624  Sum_probs=160.2

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCCCCC
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      ..++|||++++++++|++++++|.|+|+++||||||.++|||++|+++++|.+  .+|.++|||++|+|+++|+++++++
T Consensus         5 ~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~~~P~i~GHE~~G~Vv~vG~~v~~~~   84 (198)
T d2jhfa1           5 KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVR   84 (198)
T ss_dssp             SCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCSSBCCCCSEEEEEEEECTTCCSCC
T ss_pred             CceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCcccccceecccceeEEEEecCccccCcC
Confidence            46899999999999999999999999999999999999999999999999987  6789999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||||++.+..+|+.|..|..++++.|....+....-...++..++..++...+++.+.|+|+||.+++..+++++|+.+
T Consensus        85 vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p~~~  164 (198)
T d2jhfa1          85 PGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAF  164 (198)
T ss_dssp             TTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTS
T ss_pred             CCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECCCCC
Confidence            99999999999999999999999999998876533222245555566777777777778999999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF  200 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~  200 (291)
                      +++.++....++.....   ....+.+|++|+|+
T Consensus       165 ~~e~l~~~~~~~~~v~~---g~~~l~~G~~VaVi  195 (198)
T d2jhfa1         165 ALDPLITHVLPFEKINE---GFDLLRSGESIRTI  195 (198)
T ss_dssp             CCGGGEEEEEEGGGHHH---HHHHHHTTCCSEEE
T ss_pred             CHHHHHHHHHHHHhhhh---CCceeeCCCEEEEE
Confidence            88766655444433222   22336788988876

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.98  E-value=2.9e-32  Score=224.23  Aligned_cols=172  Identities=21%  Similarity=0.302  Sum_probs=143.0

Q ss_pred             cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCC--
Q 022819            9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVT--   83 (291)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~--   83 (291)
                      |.++|||++++++++|+++++++.|+|+++||||||.++|||++|+++++|.+   ++|+++|||++|+|+++|+++.  
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~   80 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDL   80 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCT
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccccc
Confidence            56899999999999999999999999999999999999999999999999877   6899999999999999999986  


Q ss_pred             ---CCCCCCEEEeecccCCCCCccccCCCC-CccccccccccccccCCcccceeccCCccccccCccceeeEEEee-ccc
Q 022819           84 ---EFNEGEHVLTVFIGECKTCRQCKSDKS-NTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGC  158 (291)
Q Consensus        84 ---~~~~GdrV~~~~~~~~~~c~~~~~~~~-~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~  158 (291)
                         ++++||||++.+..+|+.|.+|+.+.+ +.|++...  +|+.  .+...+       .  ...|+|+||+.++ ..+
T Consensus        81 ~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~--~G~~--~~~~~~-------~--~~~Gg~ae~~~v~~~~~  147 (184)
T d1vj0a1          81 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV--YGIN--RGCSEY-------P--HLRGCYSSHIVLDPETD  147 (184)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE--TTTT--CCSSST-------T--CCCSSSBSEEEECTTCC
T ss_pred             ccccccceeeeEeccccccccChhHhCccccccCCCcee--eccC--CCCCCC-------C--CcceeCcCcEEechhHc
Confidence               468999999999999999999999985 55877654  3321  000000       0  1135999999996 579


Q ss_pred             eEECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE
Q 022819          159 AVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF  200 (291)
Q Consensus       159 ~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~  200 (291)
                      ++++|+++++++      ++.+|+++ .+.+++++|++|||+
T Consensus       148 v~~ip~~l~~~~------pl~~A~~a-~~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         148 VLKVSEKITHRL------PLKEANKA-LELMESREALKVILY  182 (184)
T ss_dssp             EEEECTTCCEEE------EGGGHHHH-HHHHHHTSCSCEEEE
T ss_pred             EEECCCCCCHHH------HHHHHHHH-HHHhCCCcCCEEEEe
Confidence            999999998653      34567776 477889999999997

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.9e-32  Score=225.16  Aligned_cols=178  Identities=19%  Similarity=0.263  Sum_probs=150.1

Q ss_pred             CcceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCC
Q 022819            8 PQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGV   82 (291)
Q Consensus         8 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~   82 (291)
                      +.+.+|||+++.++...  +++++++.++++++||||||+++|||++|++++.|.+   .+|+++|||++|+|+++|+++
T Consensus         2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v   81 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS   81 (192)
T ss_dssp             CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred             CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence            35678999999988654  7788888788899999999999999999999998775   778999999999999999987


Q ss_pred             -CCCCCCCEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceE
Q 022819           83 -TEFNEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (291)
Q Consensus        83 -~~~~~GdrV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  160 (291)
                       +.+++||||.+.+. ..|+.|..|+.+++++|.+......+.. .+|.             ...|+|+||++++.++++
T Consensus        82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~-~~G~-------------~~~Ggfaey~~v~~~~~~  147 (192)
T d1piwa1          82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPY-EDGY-------------VSQGGYANYVRVHEHFVV  147 (192)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBC-TTSC-------------BCCCSSBSEEEEEGGGEE
T ss_pred             ccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccccccc-cccc-------------ccccceeeEEEeehHHeE
Confidence             56999999987765 4799999999999999998876443322 1221             112599999999999999


Q ss_pred             ECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE
Q 022819          161 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF  200 (291)
Q Consensus       161 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~  200 (291)
                      ++|++++++.|+.+...+.|||+++ +.++++++++|||.
T Consensus       148 ~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         148 PIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             ECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            9999999998887776678999975 68999999999885

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.97  E-value=4.9e-34  Score=238.31  Aligned_cols=189  Identities=21%  Similarity=0.239  Sum_probs=152.8

Q ss_pred             eeEEEEecCCCCeEEEEeecCCC-------CCCcEEEEEeEeeCChhhhhhhcccC--CCCcccCcceeEEEEEcCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPP-------QPEEIRIKVVCTSLCRSDITAWETQA--IFPRIFGHEASGIVESVGPGVT   83 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~-------~~~eVlVkv~~~~i~~~D~~~~~g~~--~~p~~~G~e~~G~V~~vG~~~~   83 (291)
                      +||+++.++++ ++++|+|.|++       .++||+|||.+++||++|+++++|..  .+|+++|||++|+|+++|++++
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~~~P~v~GHE~~G~Vv~vG~~V~   80 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGRDVE   80 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCCCTTCBCCCCEEEEEEEECTTCC
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcccccceeccceeeeeeeccccccc
Confidence            79999999986 99999999865       46999999999999999999998877  6799999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeec--cceEE
Q 022819           84 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS--GCAVK  161 (291)
Q Consensus        84 ~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~  161 (291)
                      +|++||||++.+..+|+.|.+|++++++.|........+......          . .....|+|+||+++|.  .++++
T Consensus        81 ~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~----------~-~~~~~Gg~aeyv~vp~~~~~l~~  149 (201)
T d1kola1          81 NLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYV----------D-MGDWTGGQAEYVLVPYADFNLLK  149 (201)
T ss_dssp             SCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCT----------T-SCCBCCCSBSEEEESSHHHHCEE
T ss_pred             cccccceeEEeeeeeccCChhhhCCCccccccccccccccccccc----------C-CCccccccccEEEeehHHCeEEE
Confidence            999999999999999999999999999999776544332210000          0 0011259999999974  47999


Q ss_pred             CCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 022819          162 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA  218 (291)
Q Consensus       162 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~  218 (291)
                      ||++..+.+++++...+.++++++ +..+.+.+    ++|+|++|+.++|+||++|+
T Consensus       150 iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         150 LPDRDKAMEKINIAEVVGVQVISL-DDAPRGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             CSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            999877777777776777787764 33333333    25889999999999999885

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=1.5e-31  Score=219.14  Aligned_cols=164  Identities=23%  Similarity=0.386  Sum_probs=139.5

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-----------CCCcccCcceeEEEEEcCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-----------IFPRIFGHEASGIVESVGPG   81 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----------~~p~~~G~e~~G~V~~vG~~   81 (291)
                      |||++++++++||+++++|.|+|+++||||||.+++||++|++.++|.+           .+|+++|||++|+|+++|++
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            7999999999999999999999999999999999999999999998753           57899999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccc-eE
Q 022819           82 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC-AV  160 (291)
Q Consensus        82 ~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~  160 (291)
                      +.+|++||||++.+...|+.|..|++++++.|+...+.  |.. .+                  |+|+||+.++..+ ++
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~--g~~-~~------------------G~~aey~~vp~~~~~~  139 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL--GIN-FD------------------GAYAEYVIVPHYKYMY  139 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEB--TTT-BC------------------CSSBSEEEESCGGGEE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCccee--eec-cc------------------cccccEEEEEhHHeEE
Confidence            99999999999999999999999999999999988763  432 33                  3999999997654 56


Q ss_pred             ECCCCCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEE
Q 022819          161 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVI  199 (291)
Q Consensus       161 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV  199 (291)
                      ++|+..+.+.|+.+..++.++++++ +..+. .|++|||
T Consensus       140 ~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         140 KLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             ECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             ECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            6666555555544455778888874 55555 5888887

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=3.5e-31  Score=215.79  Aligned_cols=165  Identities=28%  Similarity=0.437  Sum_probs=140.8

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |||++++++++|++++++|.|.|++|||||||++++||++|++.+++..    .+|.++|||++|+|+++|+.++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            7999999999999999999999999999999999999999999887654    788999999999999999999999999


Q ss_pred             CEEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCC
Q 022819           89 EHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP  167 (291)
Q Consensus        89 drV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  167 (291)
                      |||++.+. ..|+.|..|..+..+.|.....  .|.. .+                  |+|+||+.++.++++++|++++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP~~~~  139 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN--AGYS-VD------------------GGYAEYCRAAADYVVKIPDNTI  139 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEEEGGGCEECCTTCC
T ss_pred             eEEeeccccccccccccccCCCccccccccc--ccee-cc------------------CccccceEecHHHEEECCCCCC
Confidence            99987665 4678999999999999988876  3332 23                  4999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL  202 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~  202 (291)
                      ++.|++ . .+.++++.+ ..+.+ +|++|||+|.
T Consensus       140 ~e~A~l-~-~~~~~~~~~-~~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         140 IEVQPL-E-KINEVFDRM-LKGQI-NGRVVLTLED  170 (171)
T ss_dssp             EEEEEG-G-GHHHHHHHH-HTTCC-SSEEEEECCC
T ss_pred             HHHHHH-H-HHHHHHHHH-HhcCC-CCCEEEEeCC
Confidence            876654 3 445666654 33455 5999999873

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.97  E-value=4.7e-33  Score=227.79  Aligned_cols=166  Identities=20%  Similarity=0.183  Sum_probs=135.7

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||+++.++++ ++++|+|.|.|+++|||||+++++||++|++.+.+..   .+|+++|||++|+|+++|+++++|++||
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd   79 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD   79 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence            79999999987 9999999999999999999999999999998775444   6789999999999999999999999999


Q ss_pred             EEEeecccCCCCCccccCCCCCcccccccc-ccccccCCcccceeccCCccccccCccceeeEEEeec--cceEECCCCC
Q 022819           90 HVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS--GCAVKVSSIA  166 (291)
Q Consensus        90 rV~~~~~~~~~~c~~~~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~ip~~~  166 (291)
                      ||++.+..+|+.|.+|+.+.++.|...... .+|.. .+                  |+|+||+.++.  .+++++|+++
T Consensus        80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~-~~------------------G~~aEy~~vp~a~~~l~~iP~~~  140 (177)
T d1jqba1          80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNF-KD------------------GVFGEYFHVNDADMNLAILPKDV  140 (177)
T ss_dssp             EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTT-BC------------------CSSBSSEEESSHHHHCEECCTTS
T ss_pred             cEEEeeeeccccccchhhhhhcccccccccccccCC-CC------------------hhcCeeEEEEhhhCeEEECCCCc
Confidence            999999999999999999999999876431 11211 22                  49999999985  4789999999


Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHH
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSV  209 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~  209 (291)
                      ++++++....   +++..+        ++.++++|+|++|+.+
T Consensus       141 ~~~~~~~~~~---~~~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         141 DLSKLVTHVY---HGFDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             CGGGGEEEEE---ESGGGH--------HHHHHHHHHCCTTCSE
T ss_pred             chHHHHHHHH---HHHHHh--------cCceEEECCCHHHhhe
Confidence            9887765432   222222        2346777777777543

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=4.2e-30  Score=210.58  Aligned_cols=157  Identities=22%  Similarity=0.401  Sum_probs=129.8

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEGE   89 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~Gd   89 (291)
                      |||++..++++||+++++|.|+|+++||||||.+++||++|++.+.|..   .+|+++|||++|+|+++|+++++|++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            7999999999999999999999999999999999999999999998875   7799999999999999999999999999


Q ss_pred             EEEeecc-cCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           90 HVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        90 rV~~~~~-~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      ||.+.+. ..|+.|.+|.+++++.|+...+...+.....+             ....|+|+||+.++.++++++|+....
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~-------------~~~~GgfaEy~~v~~~~~~~ip~~~~~  147 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEP-------------GHTLGGYSQQIVVHERYVLRIRVADIE  147 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTT-------------SBCCCSSBSEEEEEGGGCEECCCCCEE
T ss_pred             EEEEcccccccCccccccCcccccCCCccccccccCCCCC-------------cccccccceEEEechHHEEECCCCCcC
Confidence            9987764 58999999999999999987654433321111             112369999999999999999976543


Q ss_pred             hhhhhhhhhhhhhHhHH
Q 022819          169 EKICLLSCGLSAGLGAA  185 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l  185 (291)
                      ..++   ..+.++++++
T Consensus       148 ~~~a---~~l~~a~~a~  161 (179)
T d1uufa1         148 MIRA---DQINEAYERM  161 (179)
T ss_dssp             EECG---GGHHHHHHHH
T ss_pred             hhHh---chhHHHHHHH
Confidence            2222   2445677654

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-28  Score=196.08  Aligned_cols=142  Identities=17%  Similarity=0.265  Sum_probs=128.0

Q ss_pred             eeeEEEEecCCCC--eEEE-EeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCC
Q 022819           12 TCKAAVAWGAGQP--LVVE-EVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        12 ~~~a~~~~~~~~~--~~~~-~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      -|||+++++.+.|  ++++ ++|.|.|++|||||||.+++||++|.+.++|.+    .+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            4899999988877  7775 689999999999999999999999999998876    56789999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      |++||||+....                             .+                  |+|+||+.++.++++++|+
T Consensus        82 ~~vGdrV~~~~~-----------------------------~~------------------G~~ae~~~v~~~~~~~iP~  114 (150)
T d1yb5a1          82 FKKGDRVFTSST-----------------------------IS------------------GGYAEYALAADHTVYKLPE  114 (150)
T ss_dssp             CCTTCEEEESCC-----------------------------SS------------------CSSBSEEEEEGGGEEECCT
T ss_pred             cccCcccccccc-----------------------------cc------------------ccccccccccccccccccC
Confidence            999999965422                             11                  4999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF  200 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~  200 (291)
                      ++++++||++++...|+|+.+...+....|+++||+
T Consensus       115 ~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         115 KLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            999999999999999999999899999999999874

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=6.7e-27  Score=181.62  Aligned_cols=127  Identities=21%  Similarity=0.211  Sum_probs=114.6

Q ss_pred             eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      |||+++.++++++++++++.|.|+++||+||+++++||++|++.++|.+    .+|+++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            7999999999999999999999999999999999999999999998876    68899999999999           39


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      |||+....                              +                  |+|+||+.++.++++++|+++++
T Consensus        70 d~V~~~~~------------------------------~------------------G~~aey~~v~~~~~~~~P~~~~~  101 (131)
T d1iz0a1          70 RRYAALVP------------------------------Q------------------GGLAERVAVPKGALLPLPEGRPV  101 (131)
T ss_dssp             EEEEEECS------------------------------S------------------CCSBSEEEEEGGGCEECCTTCCC
T ss_pred             ceEEEEec------------------------------c------------------CccceeeeeCHHHeEEccCCCCH
Confidence            99965421                              1                  49999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIF  200 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~  200 (291)
                      ++||.+++.+.|||+++.++++  .+++||++
T Consensus       102 ~~aa~~~~~~~Ta~~al~~~g~--~g~tvl~l  131 (131)
T d1iz0a1         102 VGPVFPFAEAEAAFRALLDRGH--TGKVVVRL  131 (131)
T ss_dssp             EEEEEEGGGHHHHHHHTTCTTC--CBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHhccc--CCCEEEEC
Confidence            9999999999999999877664  48988863

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.8e-26  Score=181.17  Aligned_cols=138  Identities=19%  Similarity=0.236  Sum_probs=117.9

Q ss_pred             eEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC---CCCcccCcceeEEEEEcCCCCCCCCCC
Q 022819           14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA---IFPRIFGHEASGIVESVGPGVTEFNEG   88 (291)
Q Consensus        14 ~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~p~~~G~e~~G~V~~vG~~~~~~~~G   88 (291)
                      +.+++.++|.|  |++++.|.|.|+++||+|||++++||++|++.++|.+   .+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            46788888888  9999999999999999999999999999999999886   678899999999999999999999999


Q ss_pred             CEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCCCh
Q 022819           89 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL  168 (291)
Q Consensus        89 drV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  168 (291)
                      |||+....                             .                  .|+|++|..++.+.++++|+++++
T Consensus        82 drV~~~~~-----------------------------~------------------~G~~ae~~~v~~~~~~~~P~~~~~  114 (147)
T d1qora1          82 DRVVYAQS-----------------------------A------------------LGAYSSVHNIIADKAAILPAAIKV  114 (147)
T ss_dssp             CEEEESCC-----------------------------S------------------SCCSBSEEEEEGGGEEECCTTSCC
T ss_pred             ceeeeecc-----------------------------c------------------cccceeEEEEehHHeEEcCcccch
Confidence            99953211                             1                  149999999999999999999988


Q ss_pred             hhhh--hhhhhhhhhHhHHHhhcCCCCCCEEEE
Q 022819          169 EKIC--LLSCGLSAGLGAAWNVADISKGSTVVI  199 (291)
Q Consensus       169 ~~aa--~~~~~~~ta~~~l~~~~~~~~~~~vlV  199 (291)
                      +.++  .+++...++++++.+ .++++|++|||
T Consensus       115 ~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1         115 DVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            7554  455566677776644 67899999997

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=1.7e-26  Score=184.17  Aligned_cols=144  Identities=19%  Similarity=0.192  Sum_probs=122.7

Q ss_pred             eeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCC
Q 022819           12 TCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        12 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      +|||+++.+++++  ++++++|+|+|++|||||||.+++||++|+..+.|.+    ..|.++|+|++|+|++  ..+..|
T Consensus         3 ~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~   80 (152)
T d1xa0a1           3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRF   80 (152)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSC
T ss_pred             ceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCcc
Confidence            6899999999887  5588999999999999999999999999999888765    5789999999999999  556789


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||+|+.....                       .+.. .+                  |+|+||+.++.++++++|++
T Consensus        81 ~~g~~v~~~~~~-----------------------~~~~-~~------------------G~~aEy~~v~~~~~~~iP~~  118 (152)
T d1xa0a1          81 REGDEVIATGYE-----------------------IGVT-HF------------------GGYSEYARLHGEWLVPLPKG  118 (152)
T ss_dssp             CTTCEEEEESTT-----------------------BTTT-BC------------------CSSBSEEEECGGGCEECCTT
T ss_pred             ccCCEEEEecCc-----------------------cccc-cC------------------CCcceeeeehhhccccCCCC
Confidence            999999755321                       1111 12                  49999999999999999999


Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEc
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG  201 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G  201 (291)
                      ++ .+||+++++..|+|..+....+++ |++|||+|
T Consensus       119 l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         119 LE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             HH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            98 468888889899998888888886 99999975

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.4e-24  Score=170.23  Aligned_cols=127  Identities=20%  Similarity=0.163  Sum_probs=107.1

Q ss_pred             eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCCCC
Q 022819           13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTEFN   86 (291)
Q Consensus        13 ~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~~~   86 (291)
                      |||+++.+++++  +++++++.|+|++|||+|||.+++||+.|.....|.+    .+|.++|+|++|+|+++|.  ..++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence            799999998877  7889999999999999999999999999999888876    6788999999999999765  4699


Q ss_pred             CCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCCC
Q 022819           87 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA  166 (291)
Q Consensus        87 ~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  166 (291)
                      +||+|++....                       .|.. .+                  |+|+||+.++.++++++|+++
T Consensus        79 ~g~~v~~~~~~-----------------------~g~~-~~------------------G~~Aey~~v~~~~vv~lP~~l  116 (146)
T d1o89a1          79 AGQEVLLTGWG-----------------------VGEN-HW------------------GGLAEQARVKGDWLVAMPQGQ  116 (146)
T ss_dssp             TTCEEEEECTT-----------------------BTTT-BC------------------CSSBSEEEECGGGCEECCTTS
T ss_pred             ceeeEEeeccc-----------------------ceec-CC------------------CcceeeeeeeeeeEEECCCCC
Confidence            99999765321                       1211 12                  499999999999999999999


Q ss_pred             ChhhhhhhhhhhhhhHh
Q 022819          167 PLEKICLLSCGLSAGLG  183 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~  183 (291)
                      ++++||++++...||+.
T Consensus       117 s~~eAA~l~~a~~tA~~  133 (146)
T d1o89a1         117 AAKEISLSEAPNFAEAI  133 (146)
T ss_dssp             CCEEECGGGHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999988777754

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=1.2e-25  Score=181.13  Aligned_cols=147  Identities=19%  Similarity=0.187  Sum_probs=122.4

Q ss_pred             eeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC----CCCcccCcceeEEEEEcCCCCCC
Q 022819           11 ITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA----IFPRIFGHEASGIVESVGPGVTE   84 (291)
Q Consensus        11 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~----~~p~~~G~e~~G~V~~vG~~~~~   84 (291)
                      .+|||+++++++.+  +++++++.|++++|||||||++++||++|++.+.|.+    ..|.++|+|++|+|++  +.+.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            57899999987655  9999999999999999999999999999999888876    4578999999999999  56678


Q ss_pred             CCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCC
Q 022819           85 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS  164 (291)
Q Consensus        85 ~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  164 (291)
                      +++||+|+.....                       .|.. .+                  |+|+||+.++.++++++|+
T Consensus        80 ~~~g~~v~~~~~~-----------------------~g~~-~~------------------G~~aey~~v~~~~l~~iP~  117 (162)
T d1tt7a1          80 FAEGDEVIATSYE-----------------------LGVS-RD------------------GGLSEYASVPGDWLVPLPQ  117 (162)
T ss_dssp             CCTTCEEEEESTT-----------------------BTTT-BC------------------CSSBSSEEECGGGEEECCT
T ss_pred             cccceeeEeeecc-----------------------ceec-cc------------------cccceEEEecHHHEEECCC
Confidence            9999999765332                       1111 12                  4999999999999999999


Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL  202 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~  202 (291)
                      ++++++||.+++...|+|..+. ......+++|||.|+
T Consensus       118 ~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1         118 NLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRI  154 (162)
T ss_dssp             TCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECC
Confidence            9999999999999999997643 234455677777765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.89  E-value=1.8e-23  Score=170.13  Aligned_cols=122  Identities=35%  Similarity=0.566  Sum_probs=114.9

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +|+++|+++++.+.|+|+++ +.++++++++|+|+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            57899999999999999984 77999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++  +++.+.+++++++ ++|+||||+|++..++.++++++++|++
T Consensus        80 ~~--~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~i  123 (174)
T d1jqba2          80 KN--GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGII  123 (174)
T ss_dssp             GG--SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEE
T ss_pred             cc--hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEE
Confidence            76  7788999999988 9999999999988999999999999986

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.89  E-value=2.2e-25  Score=181.47  Aligned_cols=152  Identities=16%  Similarity=0.122  Sum_probs=125.0

Q ss_pred             eeeeEEEEecCCCC-----eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccC-------------CCCcccCccee
Q 022819           11 ITCKAAVAWGAGQP-----LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQA-------------IFPRIFGHEAS   72 (291)
Q Consensus        11 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~-------------~~p~~~G~e~~   72 (291)
                      ++|||+++.++|+|     ++..++|.|+|+++||||||++++||++|++.++|.+             ..|.++|+|++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~   81 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence            47899999999887     4456777788899999999999999999999988764             45678899999


Q ss_pred             EEEEEcCCCCCCCCCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEE
Q 022819           73 GIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYT  152 (291)
Q Consensus        73 G~V~~vG~~~~~~~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  152 (291)
                      |+|++.|..+..+++||||.....                             .                  .|+|+||+
T Consensus        82 g~V~~~~~~~~~~~~g~~v~~~~~-----------------------------~------------------~g~~aey~  114 (175)
T d1gu7a1          82 FEVIKVGSNVSSLEAGDWVIPSHV-----------------------------N------------------FGTWRTHA  114 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSS-----------------------------C------------------CCCSBSEE
T ss_pred             cccccccccccccccccceecccc-----------------------------c------------------ccccccee
Confidence            999999999999999999964422                             1                  14899999


Q ss_pred             EeeccceEECCCCCChhhhhhhhhhhhhhHhHHHh-hcCCCCCCEEEEEc-C-ChHHHHHHH
Q 022819          153 VVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN-VADISKGSTVVIFG-L-GTVGLSVAQ  211 (291)
Q Consensus       153 ~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlV~G-~-g~~G~~~i~  211 (291)
                      .++.++++++|++++.+.+  +.+..+|+|+.+.. ..+++++++|||+| + |++|.+++|
T Consensus       115 ~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         115 LGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            9999999999998764443  34577788887654 46799999999996 4 679987665

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.8e-23  Score=168.14  Aligned_cols=121  Identities=21%  Similarity=0.258  Sum_probs=114.2

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      +++++||+++++++|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ ++|+++++++++++++++|++.++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5899999999999999999999999999999999986 9999999999999999 8999989999999999999999999


Q ss_pred             CCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++  .++.+.+++.+.+ ++|+|||++|+ ..++.++++++++|++
T Consensus        80 ~~~--~~~~~~i~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~i  123 (174)
T d1yb5a2          80 HRE--VNYIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHGGRV  123 (174)
T ss_dssp             TTS--TTHHHHHHHHHCTTCEEEEEESCHH-HHHHHHHHHEEEEEEE
T ss_pred             ccc--ccHHHHhhhhhccCCceEEeecccH-HHHHHHHhccCCCCEE
Confidence            976  8899999999988 99999999996 6899999999999986

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.9e-23  Score=169.40  Aligned_cols=121  Identities=21%  Similarity=0.227  Sum_probs=114.2

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      +|+++||+++++++|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +||+++++++|+++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5899999999999999999999999999999999976 7899999999999999 9999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++  +++.+.++++|++ ++|+++|++|+ +.+..++++++++|++
T Consensus        80 ~~~--~d~~~~v~~~t~g~g~d~v~d~~g~-~~~~~~~~~l~~~G~~  123 (179)
T d1qora2          80 YRE--EDLVERLKEITGGKKVRVVYDSVGR-DTWERSLDCLQRRGLM  123 (179)
T ss_dssp             TTT--SCHHHHHHHHTTTCCEEEEEECSCG-GGHHHHHHTEEEEEEE
T ss_pred             CCC--CCHHHHHHHHhCCCCeEEEEeCccH-HHHHHHHHHHhcCCee
Confidence            987  8999999999988 99999999997 5789999999999986

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.88  E-value=1.1e-22  Score=165.32  Aligned_cols=123  Identities=34%  Similarity=0.555  Sum_probs=116.2

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      ++++.|+.++|.+.|||+++.+..+++++++|+|+|+|++|++++|+|+.+|+++|++++.+++|+++++++|+++++|+
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            35788999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             CCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++  +++.+.+++++++++|+||||+|.+..++.++++++++|++
T Consensus        81 ~~--~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i  123 (174)
T d1f8fa2          81 KT--QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKI  123 (174)
T ss_dssp             TT--SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEE
T ss_pred             CC--cCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEE
Confidence            76  88999999999889999999999999999999999999986

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.88  E-value=3.1e-22  Score=162.67  Aligned_cols=124  Identities=48%  Similarity=0.812  Sum_probs=110.1

Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++||.+.|.+.|+|+++.+.++++++++|+|+|+|++|++++|+|+.+|+.+|++++.+++|+++++++|++.++++.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            56899999999999999998999999999999999999999999999999998999999999999999999999999876


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      ..+.......++..++++|++|||+|.+..++.++++++++ |++
T Consensus        82 ~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~  126 (174)
T d1e3ia2          82 ELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSC  126 (174)
T ss_dssp             GCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEE
T ss_pred             cchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEE
Confidence            43334444444444559999999999999999999999996 876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.88  E-value=4e-22  Score=162.02  Aligned_cols=124  Identities=52%  Similarity=0.958  Sum_probs=112.5

Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++||.+.|++.|+|+++.+.++++++++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++++.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            57899999999999999998999999999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +..++..+.+++.+++++|+|||++|.+..++.+..+++++|++
T Consensus        82 ~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~  125 (176)
T d2fzwa2          82 DFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGV  125 (176)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCE
T ss_pred             chhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCcee
Confidence            54456666677766669999999999988899999999988763

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=3.7e-22  Score=163.22  Aligned_cols=118  Identities=22%  Similarity=0.274  Sum_probs=111.0

Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      +|||+++++++|||+++++..+++++++|||+|+ |++|++++|+|+.+|+ ++|++.+++++++.++++|++.++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            4799999999999999999999999999999976 9999999999999999 8888889999999999999999999876


Q ss_pred             CCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                        +++.+.+++.+.+ ++|++||++|+ +.++.++++|+++|++
T Consensus        80 --~~~~~~v~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~  120 (183)
T d1pqwa_          80 --VDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPGGRF  120 (183)
T ss_dssp             --STHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEEEEE
T ss_pred             --cCHHHHHHHHhCCCCEEEEEecccc-hHHHHHHHHhcCCCEE
Confidence              8899999999988 99999999998 6889999999999986

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.87  E-value=1.4e-21  Score=158.86  Aligned_cols=123  Identities=46%  Similarity=0.738  Sum_probs=108.8

Q ss_pred             hhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND  247 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~  247 (291)
                      |.+||++.|.+.|+|+++++.++++++++|+|+|+|++|++++|+|+++|+.+|++++.+++|+++++++|+++++|+++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~   81 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD   81 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence            46799999999999999999999999999999999999999999999999989999999999999999999999999875


Q ss_pred             CCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          248 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      .+....+..+..+++++|++||++|.+..++.++..++++ |++
T Consensus        82 ~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~  125 (174)
T d1p0fa2          82 YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVT  125 (174)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEE
T ss_pred             chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCce
Confidence            3333455555555569999999999999999999988775 764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=9e-22  Score=161.02  Aligned_cols=124  Identities=26%  Similarity=0.341  Sum_probs=111.6

Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      +++.+|.+.|+..|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.++|++
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~   81 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRR   81 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEecc
Confidence            45678889999999999998889999999999999999999999999999998899999999999999999999999987


Q ss_pred             CCC-chHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNN-EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~-~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+ .+..+.+++.+.+ ++|+||||+|++..++.++++++++|++
T Consensus        82 ~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~i  127 (182)
T d1vj0a2          82 ETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFY  127 (182)
T ss_dssp             TSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEE
T ss_pred             ccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEE
Confidence            522 2345667888888 9999999999988999999999999986

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.86  E-value=2.8e-21  Score=157.26  Aligned_cols=124  Identities=46%  Similarity=0.738  Sum_probs=109.9

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      .++++||.++|.+.|+|+++.+.++++++++|+|+|+|++|+.++|+++.+|+.+||+++.+++|+++++++|+++++|+
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~   81 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISP   81 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECG
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECc
Confidence            35899999999999999999899999999999999999999999999999998899999999999999999999999998


Q ss_pred             CCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccC-ccc
Q 022819          246 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDV-RSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~-G~i  290 (291)
                      ++. ++..+.+.+.+.+ ++|+++|++|.+..+..++..+.++ |++
T Consensus        82 ~~~-~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~  127 (176)
T d1d1ta2          82 KDS-TKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTS  127 (176)
T ss_dssp             GGC-SSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEE
T ss_pred             ccc-chHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEE
Confidence            752 3334556666666 9999999999988888888888766 764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.85  E-value=8.8e-21  Score=154.17  Aligned_cols=123  Identities=51%  Similarity=0.915  Sum_probs=110.0

Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++||.++|++.|+|+++.+.+++++|++|+|+|+|++|++++++++.+|+.+||+++++++|+++++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            57899999999999999999999999999999999999999999999999988999999999999999999999999886


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCcc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~  289 (291)
                      +.++...+.+++..++++|++||++|.+..++.++..++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g  124 (176)
T d2jhfa2          82 DYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYG  124 (176)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTC
T ss_pred             CchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCc
Confidence            5444455555555555999999999999999999999998753

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.84  E-value=1.9e-21  Score=157.96  Aligned_cols=120  Identities=13%  Similarity=0.137  Sum_probs=100.5

Q ss_pred             CChhhhhhhhhhhhhhHhHH---HhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce
Q 022819          166 APLEKICLLSCGLSAGLGAA---WNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE  241 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l---~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~  241 (291)
                      +++++||+++++++|||.++   .+..+.+++++|||+|+ |++|.+++|+|+.+|+ +||++.++++|.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            58999999999999999664   45677889999999986 9999999999999999 9999999999999999999999


Q ss_pred             EeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       242 ~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|+++   .+.+.++...++++|+|||++|+ +.+..++++|+++|++
T Consensus        80 vi~~~~---~~~~~~~~~~~~gvD~vid~vgg-~~~~~~l~~l~~~Gri  124 (176)
T d1xa0a2          80 VLARED---VMAERIRPLDKQRWAAAVDPVGG-RTLATVLSRMRYGGAV  124 (176)
T ss_dssp             EEECC------------CCSCCEEEEEECSTT-TTHHHHHHTEEEEEEE
T ss_pred             eeecch---hHHHHHHHhhccCcCEEEEcCCc-hhHHHHHHHhCCCceE
Confidence            999863   33344443334499999999998 5899999999999986

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.84  E-value=3e-20  Score=150.70  Aligned_cols=122  Identities=48%  Similarity=0.884  Sum_probs=108.3

Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      ++++||.+.|++.|+|+++.+.++++++++|+|+|+|++|+.++++++.+|+.+||+++++++|++.++++|+++++|++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            57899999999999999998999999999999999999999999999999998999999999999999999999999986


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCcc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~  289 (291)
                      +. ++..+.+.+.+.+ ++|++||++|.+..++.++.+++++|.
T Consensus        82 ~~-~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~  124 (175)
T d1cdoa2          82 DH-SEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWG  124 (175)
T ss_dssp             GC-SSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTC
T ss_pred             Cc-chhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCc
Confidence            52 3344455555544 999999999998889999999888754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.2e-20  Score=150.13  Aligned_cols=121  Identities=24%  Similarity=0.391  Sum_probs=105.1

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++++||++. ++++||++ .++.+++++++|+|+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.++++
T Consensus         1 vS~e~Aal~e-pla~a~~a-~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHA-CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHH-HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            4789999775 78899997 577899999999999999999999999999999889999999999999999999999988


Q ss_pred             CCCCchHHHHHHH--HhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKR--ITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~--~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++  .+..+..+.  .+.+ ++|+||||+|.+..++.++++++++|++
T Consensus        79 ~~--~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~i  124 (171)
T d1pl8a2          79 SK--ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTL  124 (171)
T ss_dssp             SS--CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             cc--cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEE
Confidence            76  333333332  2344 8999999999999999999999999986

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.83  E-value=1.3e-20  Score=154.00  Aligned_cols=115  Identities=23%  Similarity=0.282  Sum_probs=105.0

Q ss_pred             hhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 022819          172 CLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE  250 (291)
Q Consensus       172 a~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~  250 (291)
                      +++.++++|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +||++++++++.++++++|+++++++++  +
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~--~   84 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT--V   84 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--C
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc--c
Confidence            4677789999999999999999999999987 8999999999999999 9999999999999999999999999876  7


Q ss_pred             hHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          251 PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       251 ~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++.+.+.+.+.+ ++|+|||++|+ +.+++++++++++|++
T Consensus        85 ~~~~~~~~~~~~~Gvd~v~D~vG~-~~~~~~~~~l~~~G~~  124 (182)
T d1v3va2          85 NSLEEALKKASPDGYDCYFDNVGG-EFLNTVLSQMKDFGKI  124 (182)
T ss_dssp             SCHHHHHHHHCTTCEEEEEESSCH-HHHHHHGGGEEEEEEE
T ss_pred             cHHHHHHHHhhcCCCceeEEecCc-hhhhhhhhhccCCCeE
Confidence            777777777666 99999999997 6899999999999976

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=2e-20  Score=151.08  Aligned_cols=122  Identities=24%  Similarity=0.284  Sum_probs=113.3

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      +++.+||.++|++.|||+++ +..+++++++|+|+|+ |++|++++|+++.+|..+|++++.+++|+++++++|++.+++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            57899999999999999986 6789999999999996 999999999999999879999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++  .++.+.+++.+.+ ++|++|||+|++..++.++++++++|++
T Consensus        80 ~~~--~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~i  124 (170)
T d1jvba2          80 ASM--QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKY  124 (170)
T ss_dssp             TTT--SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEE
T ss_pred             cCC--cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEE
Confidence            876  7888888998877 8999999999988999999999999986

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=7.8e-21  Score=153.89  Aligned_cols=114  Identities=22%  Similarity=0.263  Sum_probs=100.9

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      +++++||+++++++|||+++. ..+++++++|||+|+ |++|++++|+|+.+|+ +||++++++++++.++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al~-~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALK-RAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHH-HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            578999999999999999874 589999999999986 9999999999999999 9999999999999999999999998


Q ss_pred             CCCCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+    .   .++.+.+ ++|+|||++|.  .++.++++++++|++
T Consensus        79 ~~~----~---~~~~~~~~g~D~v~d~~G~--~~~~~~~~l~~~G~~  116 (171)
T d1iz0a2          79 YAE----V---PERAKAWGGLDLVLEVRGK--EVEESLGLLAHGGRL  116 (171)
T ss_dssp             GGG----H---HHHHHHTTSEEEEEECSCT--THHHHHTTEEEEEEE
T ss_pred             hhh----h---hhhhhccccccccccccch--hHHHHHHHHhcCCcE
Confidence            743    2   3444445 89999999884  579999999999986

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=5.3e-20  Score=148.01  Aligned_cols=120  Identities=21%  Similarity=0.249  Sum_probs=108.2

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++++||.++|++.|||+++ +..+++++++|+|+|+|++|++++|+|+.+|+ +||+++++++|+++++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            57999999999999999986 56899999999999999999999999999998 99999999999999999999999998


Q ss_pred             CCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++  +++.+.+++.+. +++.++++++++..++.++++++++|++
T Consensus        79 ~~--~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~G~i  120 (166)
T d1llua2          79 RQ--EDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRGGTI  120 (166)
T ss_dssp             TT--SCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEEEEE
T ss_pred             cc--hhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCCcEE
Confidence            76  777778877665 4667777788888999999999999986

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.82  E-value=8.9e-20  Score=147.19  Aligned_cols=122  Identities=27%  Similarity=0.392  Sum_probs=104.4

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++++||++. ++++||+++ ++.+++++++|+|+|+|++|++++|+|+.+|+ +||+++++++|+++++++|++..++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            4789999885 788999974 77889999999999999999999999999999 99999999999999999999987655


Q ss_pred             CCCCch---HHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEP---VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~---~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +....+   ..+.+++..++++|+||||+|++..++.++++++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~i  125 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTL  125 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCce
Confidence            433233   344455544459999999999988999999999999986

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.82  E-value=4.5e-20  Score=149.41  Aligned_cols=120  Identities=18%  Similarity=0.270  Sum_probs=108.2

Q ss_pred             hhhhhhhhhhhhhhHhHHHhhc-CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          168 LEKICLLSCGLSAGLGAAWNVA-DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       168 ~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      +.++|.+++++.|||+++.+.. .++++++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++|++++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            5788999999999999987766 489999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCchHHHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +   +..+.+.+.+.+ ++|+|||++|++..++.++++++++|++
T Consensus        86 ~---~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~i  127 (172)
T d1h2ba2          86 R---DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRL  127 (172)
T ss_dssp             S---CHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEE
T ss_pred             c---cHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEE
Confidence            4   344556667777 9999999999988899999999999986

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=9e-20  Score=150.60  Aligned_cols=119  Identities=29%  Similarity=0.349  Sum_probs=110.0

Q ss_pred             hhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 022819          169 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN  248 (291)
Q Consensus       169 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~  248 (291)
                      ++.+++...++|||+++ +.++++++++|||+|+|++|++++++|+.+|+.+||+++.+++|++.++++|+++++++.+ 
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence            56778888999999985 7899999999999999999999999999999989999999999999999999999999876 


Q ss_pred             CchHHHHHHHHhcC-CccEEEEccCC---------------hHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDG-GADYSFECIGD---------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g-~~d~vld~~g~---------------~~~~~~~~~~l~~~G~i  290 (291)
                       .++.+.+.+++.+ ++|++||++|.               +..++.++++++++|++
T Consensus        80 -~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v  136 (195)
T d1kola2          80 -TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKI  136 (195)
T ss_dssp             -SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEE
T ss_pred             -cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEE
Confidence             8899999999988 99999999984               46899999999999986

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.9e-19  Score=145.06  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=102.3

Q ss_pred             CCChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeC
Q 022819          165 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       165 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~  244 (291)
                      ..+++.+|.+.|+..|+|.++ +..+++++++|+|+|+|++|++++|+|+.+|+ ++|+++++++++++++++|++.+++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~   80 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVN   80 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEE
Confidence            455678888889999999986 67999999999999999999999999999999 7788999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          245 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +++  ++....    ..+++|++||++|.+..++.++++++++|++
T Consensus        81 ~~~--~~~~~~----~~~~~D~vid~~g~~~~~~~~~~~l~~~G~i  120 (168)
T d1uufa2          81 SRN--ADEMAA----HLKSFDFILNTVAAPHNLDDFTTLLKRDGTM  120 (168)
T ss_dssp             TTC--HHHHHT----TTTCEEEEEECCSSCCCHHHHHTTEEEEEEE
T ss_pred             Cch--hhHHHH----hcCCCceeeeeeecchhHHHHHHHHhcCCEE
Confidence            875  332211    1238999999999988899999999999986

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.78  E-value=1.2e-18  Score=140.04  Aligned_cols=120  Identities=25%  Similarity=0.287  Sum_probs=107.8

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++++||++++++.|||+++ +..+++++++|+|+|+|++|++++|+++..|+ +|++++++++|+++++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            57999999999999999985 57889999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          246 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+  +++.+.+++.+.+..|++ ++.++...++.++++++++|++
T Consensus        79 ~~--~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~a~~~l~~~G~i  120 (168)
T d1rjwa2          79 LK--EDAAKFMKEKVGGVHAAV-VTAVSKPAFQSAYNSIRRGGAC  120 (168)
T ss_dssp             TT--SCHHHHHHHHHSSEEEEE-ESSCCHHHHHHHHHHEEEEEEE
T ss_pred             cc--chhhhhcccccCCCceEE-eecCCHHHHHHHHHHhccCCce
Confidence            87  788888888887654444 5667778899999999999986

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.9e-19  Score=146.61  Aligned_cols=121  Identities=21%  Similarity=0.267  Sum_probs=104.2

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCC--CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-HHHHHHcCCce
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKG--STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CEKAKAFGVTE  241 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-~~~a~~~g~~~  241 (291)
                      +++...| ++++..|||+++.+..+++++  ++|||+|+ |++|++++|+||.+|+++|+++..++++ .++++++|++.
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            4455543 566899999999999999987  88999986 9999999999999999778877666655 44566899999


Q ss_pred             EeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       242 ~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|+++  +++.+.+++.++.++|+|||++|+ +.++.++++++++|++
T Consensus        81 vi~~~~--~~~~~~~~~~~~~GvDvv~D~vGg-~~~~~~~~~l~~~G~i  126 (187)
T d1vj1a2          81 AVNYKT--GNVAEQLREACPGGVDVYFDNVGG-DISNTVISQMNENSHI  126 (187)
T ss_dssp             EEETTS--SCHHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEEEEE
T ss_pred             Eeeccc--hhHHHHHHHHhccCceEEEecCCc-hhHHHHhhhccccccE
Confidence            999987  889999999987799999999997 6889999999999986

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.77  E-value=5.3e-19  Score=145.24  Aligned_cols=123  Identities=18%  Similarity=0.192  Sum_probs=102.3

Q ss_pred             CChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEE-cC-ChHHHHHHHHHHHcCCCeEEEEcCCh----hhHHHHHHcCC
Q 022819          166 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF-GL-GTVGLSVAQGAKARGASRIIGVDTNP----EKCEKAKAFGV  239 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~-G~-g~~G~~~i~~a~~~g~~~vi~~~~~~----~~~~~a~~~g~  239 (291)
                      +++++||+++++++|||+++.+..+++++++++|+ |+ |++|++++|+||.+|+ ++|++.++.    ++.++++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            57999999999999999999999999999999997 55 8999999999999999 888776543    45667889999


Q ss_pred             ceEeCCCC-CCchHHHHHHHHh---cCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          240 TEFLNPND-NNEPVQQVIKRIT---DGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       240 ~~~i~~~~-~~~~~~~~~~~~~---~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++++++++ +..++.+.+++.+   ++++|++||++|+ +.+..++++|+++|++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~-~~~~~~~~~l~~~G~~  133 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGG-KSSTGIARKLNNNGLM  133 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCH-HHHHHHHHTSCTTCEE
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCc-chhhhhhhhhcCCcEE
Confidence            99998753 1234555566553   3489999999997 5789999999999986

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=6.6e-19  Score=141.91  Aligned_cols=117  Identities=19%  Similarity=0.150  Sum_probs=99.1

Q ss_pred             ChhhhhhhhhhhhhhHhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCC
Q 022819          167 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN  246 (291)
Q Consensus       167 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~  246 (291)
                      +.+.||.+.|+..|+|+++ ++.+++++++|+|+|+|++|++++|+|+.+|+ +||+++++++|+++++++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence            4577889999999999986 56899999999999999999999999999999 899999999999999999999999876


Q ss_pred             CCCchHHHHHHHHhcCCccEEEEccCChH--HHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSFECIGDTG--MITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vld~~g~~~--~~~~~~~~l~~~G~i  290 (291)
                      +. .++.    +...+++|.++||++...  .++.++++++++|++
T Consensus        80 ~~-~~~~----~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~i  120 (168)
T d1piwa2          80 EE-GDWG----EKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRI  120 (168)
T ss_dssp             GT-SCHH----HHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEE
T ss_pred             ch-HHHH----HhhhcccceEEEEecCCccchHHHHHHHhhccceE
Confidence            42 2332    222348999999988643  467899999999986

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.8e-18  Score=140.43  Aligned_cols=118  Identities=13%  Similarity=0.167  Sum_probs=98.7

Q ss_pred             CChhhhhhhhhhhhhhHhHHHh---hcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce
Q 022819          166 APLEKICLLSCGLSAGLGAAWN---VADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE  241 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~~---~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~  241 (291)
                      +++.+||.++++..|||++++.   .....++++|||+|+ |++|.+++|+||.+|+ +||++.+++++.+.++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            5789999999999999987543   334456679999976 9999999999999999 8999999999999999999999


Q ss_pred             EeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          242 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       242 ~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ++|+++  .++.   +.+....+|.++|++|+ ..+...+++++++|++
T Consensus        80 vi~~~~--~~~~---~~l~~~~~~~vvD~Vgg-~~~~~~l~~l~~~Gri  122 (177)
T d1o89a2          80 VLPRDE--FAES---RPLEKQVWAGAIDTVGD-KVLAKVLAQMNYGGCV  122 (177)
T ss_dssp             EEEGGG--SSSC---CSSCCCCEEEEEESSCH-HHHHHHHHTEEEEEEE
T ss_pred             cccccc--HHHH---HHHHhhcCCeeEEEcch-HHHHHHHHHhccccce
Confidence            999865  3322   22223368999999998 6899999999999986

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=1.7e-17  Score=133.31  Aligned_cols=108  Identities=16%  Similarity=0.131  Sum_probs=87.7

Q ss_pred             hhhhhHhH---HHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchH
Q 022819          177 GLSAGLGA---AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPV  252 (291)
Q Consensus       177 ~~~ta~~~---l~~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~  252 (291)
                      +..|||.+   |.+.....++++|||+|+ |++|.+++|+||.+|+ +||++.++++|.++++++|++.++++++    +
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~----~   78 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED----V   78 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH----H
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc----h
Confidence            44566644   555566778889999986 9999999999999999 9999999999999999999999987642    2


Q ss_pred             HHHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCccc
Q 022819          253 QQVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       253 ~~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .......+.+ ++|+|||++|+ +.+..++++|+++|++
T Consensus        79 ~~~~~~~~~~~gvd~vid~vgg-~~~~~~~~~l~~~G~i  116 (167)
T d1tt7a2          79 YDGTLKALSKQQWQGAVDPVGG-KQLASLLSKIQYGGSV  116 (167)
T ss_dssp             CSSCCCSSCCCCEEEEEESCCT-HHHHHHHTTEEEEEEE
T ss_pred             hchhhhcccCCCceEEEecCcH-HHHHHHHHHhccCceE
Confidence            1222233344 99999999998 6889999999999986

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.65  E-value=2.2e-15  Score=117.99  Aligned_cols=132  Identities=15%  Similarity=0.093  Sum_probs=99.7

Q ss_pred             eeeEEEEecC--CCC----eEEEEeecCCCCCCcEEEEEeEeeCChhhhhhhcccCCCCcccCcceeEEEEEcCCCCCCC
Q 022819           12 TCKAAVAWGA--GQP----LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQAIFPRIFGHEASGIVESVGPGVTEF   85 (291)
Q Consensus        12 ~~~a~~~~~~--~~~----~~~~~~~~~~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~p~~~G~e~~G~V~~vG~~~~~~   85 (291)
                      ++|+|++.+.  |.|    |++++.++|+|++||||||+++.++++....... ......++..+++|+|++  |++++|
T Consensus         3 ~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~-~~~~g~~~~g~~vg~Vv~--S~~~~f   79 (147)
T d1v3va1           3 KAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK-RLKEGAVMMGQQVARVVE--SKNSAF   79 (147)
T ss_dssp             EEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGG-GSCTTSBCCCCEEEEEEE--ESCTTS
T ss_pred             ccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccc-ccccCCccccceEEEEEE--eCCCcc
Confidence            5689999876  444    8999999999999999999999999987654332 223344566789999998  778889


Q ss_pred             CCCCEEEeecccCCCCCccccCCCCCccccccccccccccCCcccceeccCCccccccCccceeeEEEeeccceEECCCC
Q 022819           86 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI  165 (291)
Q Consensus        86 ~~GdrV~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  165 (291)
                      ++||+|...                                                   ++|++|.+++...+.++|+.
T Consensus        80 ~~GD~V~g~---------------------------------------------------~gw~ey~v~~~~~l~kv~~~  108 (147)
T d1v3va1          80 PAGSIVLAQ---------------------------------------------------SGWTTHFISDGKGLEKLLTE  108 (147)
T ss_dssp             CTTCEEEEC---------------------------------------------------CCSBSEEEECSSSCEECCTT
T ss_pred             cCCCEEEEc---------------------------------------------------cCCEeEEEeccceeeEcccc
Confidence            999999432                                                   38999999999999999876


Q ss_pred             CChh-----hhhhhhhhhhh-hHhHHHhhcCCCCCCEEEE
Q 022819          166 APLE-----KICLLSCGLSA-GLGAAWNVADISKGSTVVI  199 (291)
Q Consensus       166 ~~~~-----~aa~~~~~~~t-a~~~l~~~~~~~~~~~vlV  199 (291)
                      ++..     ..+++....+| ||..+.  ...+.|+|||+
T Consensus       109 ~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~  146 (147)
T d1v3va1         109 WPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT  146 (147)
T ss_dssp             CCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred             ccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence            5432     34445555666 444553  44567999987

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.1e-13  Score=95.55  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             CChhhhhhhhhhhhhhHhHHH---hhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          166 APLEKICLLSCGLSAGLGAAW---NVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       166 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +++++|+.++++..|||.+++   +....+++++|||+|+ |++|.+++|+++.+|+ +|+++.+++++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578999999999999987754   4455789999999976 9999999999999999 89999999999999999985

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.72  E-value=2.8e-05  Score=60.31  Aligned_cols=90  Identities=22%  Similarity=0.215  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~--~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      ++.+|+|+|+|..|+.+++.|+.+|+ .|.++|.+.++++.++......  .+...  +..+.+.++     .+|+|+.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~--~~~l~~~~~-----~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSN--SAEIETAVA-----EADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECC--HHHHHHHHH-----TCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhh--hhhHHHhhc-----cCcEEEEe
Confidence            56789999999999999999999999 9999999999999888753322  22221  133444443     48999987


Q ss_pred             cCCh------HHHHHHHHhhccCccc
Q 022819          271 IGDT------GMITTALQSCCDVRSI  290 (291)
Q Consensus       271 ~g~~------~~~~~~~~~l~~~G~i  290 (291)
                      +=-+      -.-++.++.|++|..|
T Consensus       103 alipG~~aP~lIt~~mv~~Mk~GSVI  128 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQMRTGSVI  128 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEE
T ss_pred             eecCCcccCeeecHHHHhhcCCCcEE
Confidence            5431      1245667777777643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.64  E-value=0.00027  Score=54.47  Aligned_cols=79  Identities=18%  Similarity=0.242  Sum_probs=59.2

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcCCceEeCCCCCCchHHHHHHHHhcCCc
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      .+...--++.++||+|+|.+|..++..+...|++.+.++.++.+|.+ ++++++. ..+.+    .++.+.+.     .+
T Consensus        16 ~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~----~~~~~~l~-----~~   85 (159)
T d1gpja2          16 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-EAVRF----DELVDHLA-----RS   85 (159)
T ss_dssp             HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-EECCG----GGHHHHHH-----TC
T ss_pred             HHHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-ccccc----hhHHHHhc-----cC
Confidence            33334357889999999999999999999999978999988877754 6677874 34444    34444443     48


Q ss_pred             cEEEEccCCh
Q 022819          265 DYSFECIGDT  274 (291)
Q Consensus       265 d~vld~~g~~  274 (291)
                      |+||.|++.+
T Consensus        86 Divi~atss~   95 (159)
T d1gpja2          86 DVVVSATAAP   95 (159)
T ss_dssp             SEEEECCSSS
T ss_pred             CEEEEecCCC
Confidence            9999999863

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.59  E-value=1.4e-05  Score=65.20  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=70.8

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHh
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~~i~~~~~~~~~~~~~~~~~  260 (291)
                      +.+..+++++++||.+|+| .|+.++.+++..|. +|++++.+++-.+.++    ++|.+.+.....  +. ..  ....
T Consensus        70 ml~~L~l~~g~~VLeIGsG-sGY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g--d~-~~--g~~~  142 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG--DG-SK--GFPP  142 (215)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES--CG-GG--CCGG
T ss_pred             HHHhhccCccceEEEecCC-CChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEEC--cc-cc--CCcc
Confidence            5678899999999999986 68888888888786 8999999887665554    467655332221  10 00  0011


Q ss_pred             cCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.||.|+-+.+.+......++.|++||++
T Consensus       143 ~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrL  172 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKIPEPLIEQLKIGGKL  172 (215)
T ss_dssp             GCCEEEEEECSBBSSCCHHHHHTEEEEEEE
T ss_pred             cCcceeEEeecccccCCHHHHHhcCCCCEE
Confidence            248999988777666678889999999986

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=0.0002  Score=59.29  Aligned_cols=80  Identities=24%  Similarity=0.267  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHh--cCCccEE
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      -+|+++||.|+ +++|+++++.+...|+ +|+.+++++++.+.+++.+...+ .|..+ .++..+.+.+..  .|++|++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~iDiL   80 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED-ERERVRFVEEAAYALGRVDVL   80 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHHHHhcCCCCeE
Confidence            36899999987 8999999999999999 99999999999888888876543 33332 233333333322  2589999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        81 VnnAG~   86 (248)
T d2d1ya1          81 VNNAAI   86 (248)
T ss_dssp             EECCCC
T ss_pred             EEeCcC
Confidence            998875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=0.00037  Score=53.97  Aligned_cols=54  Identities=17%  Similarity=0.244  Sum_probs=45.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFG  238 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g  238 (291)
                      +.+..++.++++|+|+|+|+.+.+++..++.+|++++..+.++.++.+.+. .++
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~   62 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG   62 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh
Confidence            445666778899999999999999999999999988999999998877654 344

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=1e-05  Score=65.82  Aligned_cols=99  Identities=21%  Similarity=0.248  Sum_probs=70.3

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCceEe-CCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTEFL-NPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~~i-~~~~~~~~~~~~~~~  258 (291)
                      +.+..+++++++||-+|+|. |..++.+|+..|. .+|++++.+++..+.+++    .+...+. ...+....+      
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~------  139 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV------  139 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC------
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc------
Confidence            46778899999999999874 8888889998763 389999999998887765    3433221 111100100      


Q ss_pred             HhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ...+.||+|+.+.+.+......++.|++||++
T Consensus       140 ~~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~l  171 (213)
T d1dl5a1         140 PEFSPYDVIFVTVGVDEVPETWFTQLKEGGRV  171 (213)
T ss_dssp             GGGCCEEEEEECSBBSCCCHHHHHHEEEEEEE
T ss_pred             ccccchhhhhhhccHHHhHHHHHHhcCCCcEE
Confidence            11237999998777666667889999999986

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.43  E-value=0.00035  Score=54.72  Aligned_cols=95  Identities=17%  Similarity=0.208  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC-----C--------------CchHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND-----N--------------NEPVQ  253 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~-----~--------------~~~~~  253 (291)
                      ++.+|+|+|+|..|+.++..|+.+|+ .|.++|.+.++++.+++++...+ ....     .              .....
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i-~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFI-TVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEEC-CC-----------------------CCHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceE-EEeccccccccccccchhhcCHHHHHHHH
Confidence            45689999999999999999999999 99999999999999999976442 1110     0              01122


Q ss_pred             HHHHHHhcCCccEEEEccCCh------HHHHHHHHhhccCccc
Q 022819          254 QVIKRITDGGADYSFECIGDT------GMITTALQSCCDVRSI  290 (291)
Q Consensus       254 ~~~~~~~~g~~d~vld~~g~~------~~~~~~~~~l~~~G~i  290 (291)
                      +.+.+.. ...|+|+-++=-+      -.-++.++.|++|..|
T Consensus       106 ~~l~~~l-~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVI  147 (183)
T d1l7da1         106 EAVLKEL-VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVI  147 (183)
T ss_dssp             HHHHHHH-TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEE
T ss_pred             HHHHHHH-HhhhhheeeeecCCcccceeehHHHHHhcCCCcEE
Confidence            2333322 2689999865321      2346777788887654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.0008  Score=55.30  Aligned_cols=77  Identities=18%  Similarity=0.195  Sum_probs=55.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce--EeCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE--FLNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~--~i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+. +++...  ..|..+  .+..+.+-+. -+.+|+++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~-~g~iDilV   81 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD--WEATERALGS-VGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHTT-CCCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC--HHHHHHHHHH-hCCceEEE
Confidence            7899999987 8999999999999999 9999999999877654 454333  334432  3322222221 14899999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      ++.|.
T Consensus        82 nnAg~   86 (244)
T d1pr9a_          82 NNAAV   86 (244)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            98875

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.30  E-value=9e-05  Score=60.52  Aligned_cols=96  Identities=14%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC--c--eEeCCCCCCchHHHHHHHHh
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--T--EFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~--~--~~i~~~~~~~~~~~~~~~~~  260 (291)
                      +.+..+++++++||-+|+| .|..++.+|+. +. +|++++.+++..+.+++.-.  .  .++.-+. ...+      ..
T Consensus        62 ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~-~~g~------~~  131 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTG-IGYYTALIAEI-VD-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG-TLGY------EE  131 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG-GGCC------GG
T ss_pred             HHHHhhhcccceEEEecCC-CCHHHHHHHHH-hc-ccccccccHHHHHHHHHHHhcccccccccCch-hhcc------hh
Confidence            4577889999999999987 67778888886 44 89999999998888876411  1  1222111 1111      11


Q ss_pred             cCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      .+.||.|+-+.+.+......+++|++||++
T Consensus       132 ~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrL  161 (224)
T d1vbfa_         132 EKPYDRVVVWATAPTLLCKPYEQLKEGGIM  161 (224)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEE
T ss_pred             hhhHHHHHhhcchhhhhHHHHHhcCCCCEE
Confidence            247999887666666677889999999986

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.0012  Score=54.18  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceE--eCCCCCCchHHH-HHHHHhcCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF--LNPNDNNEPVQQ-VIKRITDGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~--i~~~~~~~~~~~-~~~~~~~g~~d~v  267 (291)
                      +|+++||.|+ +++|.++++.+...|+ +|+.+++++++++.+ ++++....  .|..+  .+..+ .++++  |++|++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~--g~iDil   78 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD--WDATEKALGGI--GPVDLL   78 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHTTC--CCCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC--HHHHHHHHHHc--CCCeEE
Confidence            5899999987 8999999999999999 999999998887655 44543332  33332  33222 22222  589999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        79 VnnAg~   84 (242)
T d1cyda_          79 VNNAAL   84 (242)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            998875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.20  E-value=0.00099  Score=52.52  Aligned_cols=75  Identities=21%  Similarity=0.280  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-c----CC-ceEeCCCCCCchHHHHHHHHhcCCc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F----GV-TEFLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~----g~-~~~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      =+++++||+|+ |++|..++..+...|+ +|+.++++.++.+.+.+ +    .. ....|..+  .   +.+.+.. +++
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~--~---~~~~~~~-~~i   93 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD--D---ASRAEAV-KGA   93 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS--H---HHHHHHT-TTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc--H---HHHHHHh-cCc
Confidence            38899999987 9999999999999999 99999999988766543 2    21 12333322  2   2333332 479


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |++|++.|.
T Consensus        94 Dilin~Ag~  102 (191)
T d1luaa1          94 HFVFTAGAI  102 (191)
T ss_dssp             SEEEECCCT
T ss_pred             CeeeecCcc
Confidence            999999774

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=0.00054  Score=57.98  Aligned_cols=97  Identities=14%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~  260 (291)
                      +.+.+++++|++||-+|+| .|..+..+|+..|+ +|++++.+++..+.+++    .|....+....  .++     ...
T Consensus        53 ~~~~l~l~~G~~VLDiGCG-~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~--~d~-----~~~  123 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCG-WGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI--QGW-----EEF  123 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE--CCG-----GGC
T ss_pred             HHHhcCCCCCCEEEEecCc-chHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh--hcc-----ccc
Confidence            5688899999999999987 45567888998999 99999999998776644    45433221111  111     122


Q ss_pred             cCCccEEEE-----ccCC----------hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFE-----CIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld-----~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      ++.||.|+.     .++.          +..++.+.++|+|||++
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~  168 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRM  168 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEE
T ss_pred             ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCce
Confidence            457997664     3332          35788999999999986

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.0012  Score=54.10  Aligned_cols=79  Identities=22%  Similarity=0.260  Sum_probs=56.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCceE-eCCCCCCchHHHHHHHHh--cCCccEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEF-LNPNDNNEPVQQVIKRIT--DGGADYS  267 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~~-i~~~~~~~~~~~~~~~~~--~g~~d~v  267 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+. ++++..+ .|..+ +++..+.+.+..  .+++|++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iDil   81 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD-PASVERGFAEALAHLGRLDGV   81 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC-HHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC-HHHHHHHHHHHHHhcCCceEE
Confidence            5789999987 8999999999999999 9999999998877664 4554332 34332 233333333322  2479999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        82 VnnAG~   87 (242)
T d1ulsa_          82 VHYAGI   87 (242)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            998875

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00079  Score=55.59  Aligned_cols=79  Identities=18%  Similarity=0.316  Sum_probs=56.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEe--CCCCCCchHHHHHHHHhc--CCccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFL--NPNDNNEPVQQVIKRITD--GGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i--~~~~~~~~~~~~~~~~~~--g~~d~  266 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+.+ ++....+  |..+ .++..+.+.+...  +++|+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~iDi   82 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRLDC   82 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC-HHHHHHHHHHHHHhcCCCCE
Confidence            6899999987 8999999999999999 99999999998887654 4433333  3322 2333333333322  58999


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++++.|.
T Consensus        83 lVnnAG~   89 (250)
T d1ydea1          83 VVNNAGH   89 (250)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9998884

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.18  E-value=0.0016  Score=53.97  Aligned_cols=79  Identities=18%  Similarity=0.285  Sum_probs=56.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCch---HHHHHHHHhc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEP---VQQVIKRITD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~---~~~~~~~~~~  261 (291)
                      +|+++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+    ++.+... .  .|..+ +++   +.+.+.+..+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~-~~~~~~~~~~~~~~~~   82 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHVFD   82 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC-HHHHHHHHHHHHHHhC
Confidence            6899999987 8999999999999999 999999998876654    3345443 2  23332 122   2333444444


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +..|+++.+.|.
T Consensus        83 g~idilinnag~   94 (258)
T d1ae1a_          83 GKLNILVNNAGV   94 (258)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcEEEeccccc
Confidence            578999998875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00074  Score=55.55  Aligned_cols=80  Identities=15%  Similarity=0.183  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      -+|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+.+.........+....+..+.+.+.. +.+|+++++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~id~lVn~   81 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEV-ERLDVLFNV   81 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHC-SCCSEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeecccccccccccccc-ccceeEEec
Confidence            36889999987 8999999999999999 99999999988877665433332222222244444444432 479999998


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .|.
T Consensus        82 ag~   84 (245)
T d2ag5a1          82 AGF   84 (245)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            775

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.08  E-value=0.00028  Score=58.45  Aligned_cols=99  Identities=12%  Similarity=0.082  Sum_probs=65.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cC-CceEeCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FG-VTEFLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g-~~~~i~~~~~~~~~~~~~~~  258 (291)
                      +....++++|++||-.|+| .|.+++.+|+..|. .+|++++.+++..+.|++    ++ ...+-...   .++.+.   
T Consensus        77 Ii~~l~i~pG~rVLEiG~G-sG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~---~Di~~~---  149 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR---SDIADF---  149 (250)
T ss_dssp             ----CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC---SCTTTC---
T ss_pred             HHHHcCCCCcCEEEEeeee-CcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE---eeeecc---
Confidence            4566889999999999986 36777788887653 389999999999888865    22 22211111   111111   


Q ss_pred             HhcCCccEEE-EccCChHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSF-ECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vl-d~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      +....||.|+ |.......+..+.+.|++||++
T Consensus       150 ~~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~l  182 (250)
T d1yb2a1         150 ISDQMYDAVIADIPDPWNHVQKIASMMKPGSVA  182 (250)
T ss_dssp             CCSCCEEEEEECCSCGGGSHHHHHHTEEEEEEE
T ss_pred             cccceeeeeeecCCchHHHHHHHHHhcCCCceE
Confidence            1223789776 4444456799999999999986

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.06  E-value=0.00088  Score=55.44  Aligned_cols=79  Identities=23%  Similarity=0.340  Sum_probs=56.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceE---eCCCCCCchHHHHHHHHhc--CCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF---LNPNDNNEPVQQVIKRITD--GGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~---i~~~~~~~~~~~~~~~~~~--g~~d  265 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+ +++|....   .|..+ +++..+.+.+...  |++|
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~~g~iD   81 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD-QASIDRCVAELLDRWGSID   81 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC-HHHHHHHHHHHHHHhCCcc
Confidence            5789999987 8999999999999999 999999998877654 56665442   24332 2333333333322  5899


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        82 ilVnnAg~   89 (256)
T d1k2wa_          82 ILVNNAAL   89 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEeeccc
Confidence            99999885

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.05  E-value=0.0024  Score=48.85  Aligned_cols=88  Identities=15%  Similarity=0.013  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      ++++|+|+|+|.+|..+++.+...|. .|++++++.++.+.+.+-.....+....  ........+.. ...|.++.+..
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~--~~~~~~~~~~i-~~~~~~i~~~~   76 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLD--VNDDAALDAEV-AKHDLVISLIP   76 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECC--TTCHHHHHHHH-TTSSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhccccccccccc--ccchhhhHhhh-hccceeEeecc
Confidence            36899999999999999999998899 8999999999988776532222222211  11111122211 24677777766


Q ss_pred             ChHHHHHHHHhh
Q 022819          273 DTGMITTALQSC  284 (291)
Q Consensus       273 ~~~~~~~~~~~l  284 (291)
                      .......+..++
T Consensus        77 ~~~~~~~~~~~~   88 (182)
T d1e5qa1          77 YTFHATVIKSAI   88 (182)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             chhhhHHHHHHH
Confidence            544444333333

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.03  E-value=0.0024  Score=52.77  Aligned_cols=79  Identities=14%  Similarity=0.226  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHH---hc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRI---TD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~---~~  261 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+.    +.|... .  .|..+ +++..+.+.+.   .+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANHFH   84 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC-HHHHHHHHHHHHHHhC
Confidence            6899999987 8999999999999999 9999999998876542    334433 2  23332 23333333332   23


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++++.|.
T Consensus        85 ~~idilvnnAG~   96 (259)
T d2ae2a_          85 GKLNILVNNAGI   96 (259)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCceEEEECCce
Confidence            379999999885

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00019  Score=58.91  Aligned_cols=97  Identities=21%  Similarity=0.244  Sum_probs=68.0

Q ss_pred             HHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce---EeCCCCCCchHHHHH
Q 022819          184 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE---FLNPNDNNEPVQQVI  256 (291)
Q Consensus       184 ~l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~---~i~~~~~~~~~~~~~  256 (291)
                      .+.+..+++++++||=+|+| .|..+..+++..|+ +|++++.+++..+.+++    .|...   ++.-+.  .+    +
T Consensus        24 ~l~~~~~l~pg~~VLDiGCG-~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~--~~----~   95 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLGSG-SGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA--AG----Y   95 (245)
T ss_dssp             HHHHHTCCCTTCEEEEETCT-TCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC--TT----C
T ss_pred             HHHHHcCCCCCCEEEEEcCC-CCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhHH--hh----c
Confidence            35678899999999999986 45567778888898 99999999988877765    35432   222111  11    0


Q ss_pred             HHHhcCCccEEEEc-----c-CChHHHHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFEC-----I-GDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~-----~-g~~~~~~~~~~~l~~~G~i  290 (291)
                        ..++.||.|+-.     . .-...++.+.+.|+|||++
T Consensus        96 --~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l  133 (245)
T d1nkva_          96 --VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIM  133 (245)
T ss_dssp             --CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEE
T ss_pred             --cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEE
Confidence              123479988742     1 2356788899999999986

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00043  Score=56.33  Aligned_cols=97  Identities=13%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             Hhhc--CCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCc-------eEeCCCCCCch
Q 022819          186 WNVA--DISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVT-------EFLNPNDNNEP  251 (291)
Q Consensus       186 ~~~~--~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~-------~~i~~~~~~~~  251 (291)
                      .+..  +++++++||.+|+| .|..++.+|+..|. .+|++++.+++-.+.+++    .+..       .++..+. ...
T Consensus        67 le~L~~~l~~g~~VLdiG~G-sGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~-~~~  144 (224)
T d1i1na_          67 LELLFDQLHEGAKALDVGSG-SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG-RMG  144 (224)
T ss_dssp             HHHTTTTSCTTCEEEEETCT-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG-GGC
T ss_pred             HHHHhhccCCCCeEEEecCC-CCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec-ccc
Confidence            4444  78999999999987 58888888888763 389999999988777643    2221       1111110 000


Q ss_pred             HHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          252 VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       252 ~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                            ....+.||.|+-+...+...+..++.|++||++
T Consensus       145 ------~~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~L  177 (224)
T d1i1na_         145 ------YAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRL  177 (224)
T ss_dssp             ------CGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEE
T ss_pred             ------cchhhhhhhhhhhcchhhcCHHHHhhcCCCcEE
Confidence                  011237999998777666678899999999986

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.0014  Score=53.91  Aligned_cols=79  Identities=16%  Similarity=0.225  Sum_probs=56.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHhc--CCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRITD--GGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~~--g~~d  265 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+ ++++... .  .|..+ +++..+.+++...  +++|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC-HHHHHHHHHHHHHHhCCCe
Confidence            6789999987 8999999999999999 999999999887655 4454332 2  23332 2333333333322  4799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        83 ilinnAG~   90 (244)
T d1nffa_          83 VLVNNAGI   90 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999886

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.00026  Score=59.81  Aligned_cols=97  Identities=11%  Similarity=0.121  Sum_probs=67.8

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHh
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~  260 (291)
                      +.+..++++|++||-+|+| .|..++.+|+..|+ +|+++..+++..+++++.    |...-+....  .++    ++ .
T Consensus        54 ~~~~l~l~~G~~VLDiGCG-~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~--~d~----~~-~  124 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCG-WGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL--AGW----EQ-F  124 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE--SCG----GG-C
T ss_pred             HHHHcCCCCCCEEEEecCc-chHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH--hhh----hc-c
Confidence            5678899999999999997 56778889999999 999999999998888653    2211111000  111    11 1


Q ss_pred             cCCccEEEE-----ccCC---hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFE-----CIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld-----~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      ++.+|.|+.     .++.   ...++.+.++|++||++
T Consensus       125 ~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~  162 (285)
T d1kpga_         125 DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM  162 (285)
T ss_dssp             CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred             cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcE
Confidence            247886554     3433   35688899999999985

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.99  E-value=0.0016  Score=53.86  Aligned_cols=79  Identities=28%  Similarity=0.402  Sum_probs=55.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +|+++||.|+ +++|++++..+...|+ +|+.+++++++++.+.    +.|... .  .|..+ +++..+.+.+..  .|
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            6899999987 8999999999999999 9999999998876553    345433 2  23332 233333333322  25


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        82 ~iDilVnnaG~   92 (260)
T d1zema1          82 KIDFLFNNAGY   92 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCeehhhhcc
Confidence            89999998874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.97  E-value=0.001  Score=51.84  Aligned_cols=96  Identities=9%  Similarity=0.040  Sum_probs=64.0

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC-Cce-----------------EeCCCC
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG-VTE-----------------FLNPND  247 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g-~~~-----------------~i~~~~  247 (291)
                      +....+.++.+||.+|+| .|..++.+|+ .|+ +|+++|.+++-++.+++.. ...                 ++.-+.
T Consensus        13 ~~~l~~~~~~rvLd~GCG-~G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCG-KSQDMSWLSG-QGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHCCCTTCEEEETTTC-CSHHHHHHHH-HCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHcCCCCCCEEEEecCc-CCHHHHHHHH-cCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            445678999999999997 5778888887 498 9999999999999997631 100                 000000


Q ss_pred             CCchHHHHHHHHhcCCccEEEEccCC--------hHHHHHHHHhhccCccc
Q 022819          248 NNEPVQQVIKRITDGGADYSFECIGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       248 ~~~~~~~~~~~~~~g~~d~vld~~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                        .++....    ...+|.|++...-        ...++...+.|++||++
T Consensus        90 --~~l~~~~----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l  134 (201)
T d1pjza_          90 --FALTARD----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSG  134 (201)
T ss_dssp             --SSSTHHH----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEE
T ss_pred             --ccccccc----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEE
Confidence              1111111    1268888874331        34577888899999974

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.96  E-value=0.0014  Score=54.07  Aligned_cols=79  Identities=28%  Similarity=0.324  Sum_probs=55.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+ ++++... .  .|..+ +++..+.+++..  .+++|
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD   81 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC-HHHHHHHHHHHHHHcCCcc
Confidence            5889999987 8999999999999999 899999998887655 4565433 2  23332 233333333322  24899


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        82 ilVnnAg~   89 (254)
T d1hdca_          82 GLVNNAGI   89 (254)
T ss_dssp             EEEECCCC
T ss_pred             EEEecCcc
Confidence            99998875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.96  E-value=0.0011  Score=48.93  Aligned_cols=75  Identities=21%  Similarity=0.380  Sum_probs=55.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      ++++|+|.|.+|..+++.+...|. .|++++.++++.+.++..+...++- +..+.+   .+.+..-..+|.++-+++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~g-d~~~~~---~l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIA-NATEEN---ELLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEEC-CTTCTT---HHHHHTGGGCSEEEECCCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceee-ecccch---hhhccCCccccEEEEEcCch
Confidence            357888999999999999999999 8999999999999998888655442 211233   33443223688888877753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.95  E-value=0.0033  Score=48.44  Aligned_cols=85  Identities=14%  Similarity=0.201  Sum_probs=57.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCC--------CchHHHHHHHHhcCCcc
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN--------NEPVQQVIKRITDGGAD  265 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~--------~~~~~~~~~~~~~g~~d  265 (291)
                      ++++.|+|+|.+|++.+..+...|. .|..+++++++.+.+++.+..........        ..+..+.+     ..+|
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~aD   74 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----KDAD   74 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----TTCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-----cCCC
Confidence            4789999999999999999999999 99999999999998887653322111100        01222222     2578


Q ss_pred             EEEEccCChHHHHHHHHhhc
Q 022819          266 YSFECIGDTGMITTALQSCC  285 (291)
Q Consensus       266 ~vld~~g~~~~~~~~~~~l~  285 (291)
                      ++|-++.... .+..++.++
T Consensus        75 ~iii~v~~~~-~~~~~~~i~   93 (184)
T d1bg6a2          75 VILIVVPAIH-HASIAANIA   93 (184)
T ss_dssp             EEEECSCGGG-HHHHHHHHG
T ss_pred             EEEEEEchhH-HHHHHHHhh
Confidence            8888887642 344444333

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.0019  Score=53.17  Aligned_cols=79  Identities=22%  Similarity=0.394  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-----HHcCCce-E--eCCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+     ++.|... .  .|..+ +++..+.+++..  .
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            5789999987 8999999999999999 999999998876533     3345543 2  23332 233333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      |++|+++++.|.
T Consensus        82 g~iDiLVnnAG~   93 (251)
T d1vl8a_          82 GKLDTVVNAAGI   93 (251)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            489999999885

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.94  E-value=0.0015  Score=53.98  Aligned_cols=80  Identities=18%  Similarity=0.224  Sum_probs=55.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceE-eCCCCC-CchHHHHHHHHh--cCCccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF-LNPNDN-NEPVQQVIKRIT--DGGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~-i~~~~~-~~~~~~~~~~~~--~g~~d~  266 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+ ++++.... +..+-. +.+..+.+++..  .+.+|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            6789999987 8999999999999999 999999999887655 45665443 222211 123333333322  258999


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++++.|.
T Consensus        84 lVnnAG~   90 (253)
T d1hxha_          84 LVNNAGI   90 (253)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999885

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.93  E-value=0.0057  Score=44.82  Aligned_cols=74  Identities=23%  Similarity=0.412  Sum_probs=54.6

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      +|+|.|.|.+|...++.+...|. .|++++.++++.+.+++ ++.. ++.-+   ..-.+.+++..-..+|.++-+++..
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi~Gd---~~~~~~l~~~~i~~a~~vv~~t~~d   76 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGD---CTKIKTLEDAGIEDADMYIAVTGKE   76 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESC---TTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hccCc---ccchhhhhhcChhhhhhhcccCCcH
Confidence            58899999999999999999998 99999999999887764 5654 33222   1122344554334789999888874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.91  E-value=0.00023  Score=60.04  Aligned_cols=97  Identities=10%  Similarity=0.134  Sum_probs=66.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHh
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~  260 (291)
                      +.+..++++|++||-+|+| .|..+..+++..|+ +|++++.+++..+++++.    |....+....  .+.    ++ .
T Consensus        44 ~~~~l~l~~g~~VLDiGCG-~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~--~d~----~~-~  114 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCG-WGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL--QGW----ED-F  114 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE--SCG----GG-C
T ss_pred             HHHHcCCCCCCEEEEecCC-chHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh--hhh----hh-h
Confidence            5677889999999999986 34456778888899 999999999998887653    3322111100  111    11 1


Q ss_pred             cCCccEEEE-----ccCC---hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFE-----CIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld-----~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      .+.+|.|+.     .++.   +..++...+.|+|||++
T Consensus       115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~  152 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRM  152 (280)
T ss_dssp             CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEE
T ss_pred             ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceE
Confidence            347887653     3433   35688899999999986

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.89  E-value=0.0028  Score=52.39  Aligned_cols=79  Identities=16%  Similarity=0.198  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce---EeCCCCCCchHHH---HHHHHhc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE---FLNPNDNNEPVQQ---VIKRITD  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~---~i~~~~~~~~~~~---~~~~~~~  261 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+.    +.+...   ..|..+ +++..+   .+.+..+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~   84 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSMFG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC-HHHHHHHHHHHHHHhC
Confidence            6899999987 8999999999999999 9999999988876553    233322   223332 123333   3333334


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      |.+|+++++.|.
T Consensus        85 g~idilvnnAG~   96 (259)
T d1xq1a_          85 GKLDILINNLGA   96 (259)
T ss_dssp             TCCSEEEEECCC
T ss_pred             CCcccccccccc
Confidence            579999999886

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.87  E-value=0.0016  Score=54.49  Aligned_cols=79  Identities=23%  Similarity=0.240  Sum_probs=55.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~---~i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+ ++++...   ..|..+ .++..+.+.+..  .+.+|
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id   81 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS-LEDQKQAASRCVARFGKID   81 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc-HHHHHHHHHHHHHHhCCcc
Confidence            5899999987 8999999999999999 999999999887655 4455433   223332 123333333322  25899


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        82 ilvnnAG~   89 (276)
T d1bdba_          82 TLIPNAGI   89 (276)
T ss_dssp             EEECCCCC
T ss_pred             cccccccc
Confidence            99998873

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.0019  Score=53.72  Aligned_cols=98  Identities=18%  Similarity=0.277  Sum_probs=69.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCce-E-eCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTE-F-LNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~-~-i~~~~~~~~~~~~~~  257 (291)
                      +...+++++|++||=.|+| .|..++.+|+..+. .+|++++.+++..+.+++    +|... + +...+    .   ..
T Consensus        95 Ii~~l~i~pG~~VLDiG~G-sG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d----~---~~  166 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVG-SGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD----I---SE  166 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC----G---GG
T ss_pred             HHHhhCCCCCCEEEECCCC-CCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc----c---cc
Confidence            5678899999999999987 37778888988753 289999999998888754    45422 2 22221    1   01


Q ss_pred             HHhcCCccEEEEccCC-hHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECIGD-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~g~-~~~~~~~~~~l~~~G~i  290 (291)
                      .+....+|.|+--+.. +..++.+.+.|++||++
T Consensus       167 ~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~l  200 (266)
T d1o54a_         167 GFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRF  200 (266)
T ss_dssp             CCSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEE
T ss_pred             cccccceeeeEecCCCHHHHHHHHHhhcCCCCEE
Confidence            1112267866555554 56799999999999986

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0011  Score=54.31  Aligned_cols=79  Identities=25%  Similarity=0.442  Sum_probs=55.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCce---EeCCCCCCchHHHHHHHHh--cCCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE---FLNPNDNNEPVQQVIKRIT--DGGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~~~---~i~~~~~~~~~~~~~~~~~--~g~~d  265 (291)
                      +|+++||.|+ +++|++.++.+...|+ +|+.+++++++++.+. +++...   ..|..+ +++..+.+++..  .|++|
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD   80 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD-PASIESVLEKIRAEFGEVD   80 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHTCSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC-HHHhhhhhhhhhcccCCcc
Confidence            5789999987 8999999999999999 9999999998877554 454332   234432 233333333332  25899


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++++.|.
T Consensus        81 ilVnnAg~   88 (243)
T d1q7ba_          81 ILVNNAGI   88 (243)
T ss_dssp             EEEECCCC
T ss_pred             eehhhhhh
Confidence            99998875

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0027  Score=52.03  Aligned_cols=79  Identities=18%  Similarity=0.221  Sum_probs=56.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      .|+++||.|+ +++|..++..+...|+ +|+.+++++++++.+.    +.|... .  .|..+ .++....+++..  .|
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAEIG   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcC
Confidence            5899999987 8999999999999999 9999999999877553    344433 2  23332 233333444332  34


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++++.|.
T Consensus        84 ~idilinnag~   94 (244)
T d1yb1a_          84 DVSILVNNAGV   94 (244)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCceeEeeccc
Confidence            79999999886

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.81  E-value=0.0039  Score=51.63  Aligned_cols=79  Identities=22%  Similarity=0.361  Sum_probs=55.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC---ceEe--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGV---TEFL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~---~~~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+. +++.   ...+  |..+ +++..+.+.+..  .|.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            6899999987 8999999999999999 9999999998877654 3432   2222  3332 233333333322  258


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++++.|.
T Consensus        83 iD~lVnnAG~   92 (268)
T d2bgka1          83 LDIMFGNVGV   92 (268)
T ss_dssp             CCEEEECCCC
T ss_pred             cceecccccc
Confidence            9999998874

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00017  Score=58.78  Aligned_cols=94  Identities=14%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce---EeCCCCCCchHHHHHHHHhcCCccEE-
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE---FLNPNDNNEPVQQVIKRITDGGADYS-  267 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~---~i~~~~~~~~~~~~~~~~~~g~~d~v-  267 (291)
                      .+|.+||-+|+| .|..+..+++..+. ++++++.+++.++.+++.....   +....   .+.......+..+.||.+ 
T Consensus        52 ~~g~~VLdIGcG-~G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~fD~i~  126 (229)
T d1zx0a1          52 SKGGRVLEVGFG-MAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK---GLWEDVAPTLPDGHFDGIL  126 (229)
T ss_dssp             TTCEEEEEECCT-TSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE---SCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEeecc-chHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhccccccccc---cccccccccccccccccee
Confidence            678899999987 56777888887665 8999999999999987643211   11111   223333344444578876 


Q ss_pred             EEccCC----------hHHHHHHHHhhccCccc
Q 022819          268 FECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       268 ld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      ||.+..          +..++.+.+.|++||++
T Consensus       127 fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~  159 (229)
T d1zx0a1         127 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  159 (229)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             ecccccccccccccCHHHHHHHHHHHcCCCcEE
Confidence            464432          23667788999999976

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.77  E-value=0.0024  Score=52.28  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=54.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHHcCCce--Ee--CCCCCCc---hHHHHHHHHhcC-C
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGVTE--FL--NPNDNNE---PVQQVIKRITDG-G  263 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~-~vi~~~~~~~~~~~a~~~g~~~--~i--~~~~~~~---~~~~~~~~~~~g-~  263 (291)
                      .++|||.|+ +++|+++++.+...|+. +|+.+.+++++++.+++.....  ++  |..+ .+   .+.+.+.+..+. +
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~~~~   81 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCC-HHHHHHHHHHHHHHhCCCC
Confidence            478999987 89999999888888863 7888899999888877653222  22  3332 12   234444443333 6


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++.+.|.
T Consensus        82 idilinnAG~   91 (250)
T d1yo6a1          82 LSLLINNAGV   91 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             eEEEEEcCcc
Confidence            9999999884

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0077  Score=51.39  Aligned_cols=100  Identities=17%  Similarity=0.124  Sum_probs=67.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-----------CC----ceEeCCCCCC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-----------GV----TEFLNPNDNN  249 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-----------g~----~~~i~~~~~~  249 (291)
                      +.+..+++++++|+-+|+| .|..++++|+..++.++++++.+++..+.+++.           |.    -.++.-+..+
T Consensus       143 ~~~~~~l~~~~~vlD~GcG-~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSG-VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCT-TSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             HHHHcCCCCCCEEEEcCCC-CCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            5677889999999999987 788889999999987899999999887776542           21    1233222212


Q ss_pred             chHHHHHHHHhcCCccEEEEccC--C---hHHHHHHHHhhccCccc
Q 022819          250 EPVQQVIKRITDGGADYSFECIG--D---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 ~~~~~~~~~~~~g~~d~vld~~g--~---~~~~~~~~~~l~~~G~i  290 (291)
                      .++.+.+..     +|+|+-..-  .   ...+....+.|++||+|
T Consensus       222 ~~~~~~~~~-----advi~~~~~~f~~~~~~~l~e~~r~LKpGg~i  262 (328)
T d1nw3a_         222 EEWRERIAN-----TSVIFVNNFAFGPEVDHQLKERFANMKEGGRI  262 (328)
T ss_dssp             HHHHHHHHH-----CSEEEECCTTTCHHHHHHHHHHHTTCCTTCEE
T ss_pred             cccccccCc-----ceEEEEcceecchHHHHHHHHHHHhCCCCcEE
Confidence            333333322     677774211  1   23466777889999986

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0031  Score=51.97  Aligned_cols=79  Identities=16%  Similarity=0.256  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+    ++.|... .+  |..+ +++..+.+.+..  .|
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~-~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISKLG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            6899999987 8999999999999999 999999998876654    3455433 22  3322 223333333222  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        88 ~iDilvnnAG~   98 (255)
T d1fmca_          88 KVDILVNNAGG   98 (255)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEeeeCCcC
Confidence            79999999886

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0058  Score=46.96  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=38.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      ..++++|||+|+|+.+++++..+..+|+ ++..+.|+.+|.+.+.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELA   58 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHH
Confidence            4578999999999999999999999999 7888999988866553

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.0054  Score=49.67  Aligned_cols=72  Identities=15%  Similarity=0.195  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      +++++||+|+ +++|+++++.+...|+ +|+.+++++++++   +.+...+ .|.+   +.....++++  +.+|+++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~---~~~~~~~~~Dv~---~~~~~~~~~~--g~iD~lVnn   73 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLK---RSGHRYVVCDLR---KDLDLLFEKV--KEVDILVLN   73 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH---HTCSEEEECCTT---TCHHHHHHHS--CCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH---hcCCcEEEcchH---HHHHHHHHHh--CCCcEEEec
Confidence            5789999987 8999999999999999 9999999876554   4554332 2332   2333333333  579999998


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .|.
T Consensus        74 AG~   76 (234)
T d1o5ia_          74 AGG   76 (234)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.0036  Score=55.11  Aligned_cols=101  Identities=21%  Similarity=0.199  Sum_probs=67.7

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc-----------C----CceE-eCCCCC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-----------G----VTEF-LNPNDN  248 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~-----------g----~~~~-i~~~~~  248 (291)
                      +.+..++++++++|=+|+| .|..++++|+..|++++++++.++...+.|++.           |    .... +..+..
T Consensus       208 Il~~l~Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~  286 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  286 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHHhCCCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence            5677889999999999998 799999999999987999999999888777542           1    1111 111111


Q ss_pred             CchHHHHHHHHhcCCccEEEEccC--C---hHHHHHHHHhhccCccc
Q 022819          249 NEPVQQVIKRITDGGADYSFECIG--D---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       249 ~~~~~~~~~~~~~g~~d~vld~~g--~---~~~~~~~~~~l~~~G~i  290 (291)
                      ..+..   ... -..+|+++-..-  .   ...+....+.|++||+|
T Consensus       287 ~~~~~---d~~-~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrI  329 (406)
T d1u2za_         287 DNNRV---AEL-IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKI  329 (406)
T ss_dssp             TCHHH---HHH-GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEE
T ss_pred             hcccc---ccc-cccceEEEEecccCchHHHHHHHHHHHhcCCCcEE
Confidence            12221   111 124777774311  1   34577888899999986

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.70  E-value=0.0045  Score=51.78  Aligned_cols=80  Identities=13%  Similarity=0.160  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-----HHcCCce-EeCCCCCCch-HHHHHHHH--hcC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-----KAFGVTE-FLNPNDNNEP-VQQVIKRI--TDG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-----~~~g~~~-~i~~~~~~~~-~~~~~~~~--~~g  262 (291)
                      +|+++||.|+ +++|.+++..+...|+ +|+.+++++++++.+     ++.|... .+..+-.+.+ ....+...  ..+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            5799999987 8999999999999999 999999998876543     2234433 3322221232 22222222  124


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus       103 ~iDilvnnAg~  113 (294)
T d1w6ua_         103 HPNIVINNAAG  113 (294)
T ss_dssp             SCSEEEECCCC
T ss_pred             ccchhhhhhhh
Confidence            89999998885

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00043  Score=59.50  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cC-----------Cce--EeCCC
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FG-----------VTE--FLNPN  246 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g-----------~~~--~i~~~  246 (291)
                      +...+++++|++||=.|+| .|.+++.+|+..|. .+|++++.+++..+.|++    ++           .+.  ++..+
T Consensus        90 Il~~l~i~pG~rVLE~GtG-sG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSG-SGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCT-TSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHHhCCCCCCEEEEeccc-ccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            5667889999999999986 48888899998764 389999999998888764    11           011  11111


Q ss_pred             CCCchHHHHHHHHhcCCccEEE-EccCChHHHHHHHHhhccCccc
Q 022819          247 DNNEPVQQVIKRITDGGADYSF-ECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       247 ~~~~~~~~~~~~~~~g~~d~vl-d~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      -  .++   ...+..+.+|.|| |-......+..+.+.|++||+|
T Consensus       169 i--~~~---~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~l  208 (324)
T d2b25a1         169 I--SGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVC  208 (324)
T ss_dssp             T--TCC---C-------EEEEEECSSSTTTTHHHHGGGEEEEEEE
T ss_pred             h--hhc---ccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEE
Confidence            0  111   1111123678544 5444446789999999999976

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.70  E-value=0.0023  Score=53.13  Aligned_cols=99  Identities=18%  Similarity=0.289  Sum_probs=68.3

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----c-C--CceE-eCCCCCCchHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----F-G--VTEF-LNPNDNNEPVQQV  255 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~-g--~~~~-i~~~~~~~~~~~~  255 (291)
                      +...+++++|++||=.|+| .|.+++.+|+..|. .+|++++.+++..+.+++    + +  .+.+ +...+    ..+ 
T Consensus        88 Ii~~l~i~PG~~VLE~G~G-sG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d----~~~-  161 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD----LAD-  161 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC----GGG-
T ss_pred             HHHHhCCCCCCEEEecCcC-CcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc----ccc-
Confidence            5677899999999999886 57788889998764 389999999999888865    1 1  1211 11111    100 


Q ss_pred             HHHHhcCCccEEE-EccCChHHHHHHHHhhccCccc
Q 022819          256 IKRITDGGADYSF-ECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       256 ~~~~~~g~~d~vl-d~~g~~~~~~~~~~~l~~~G~i  290 (291)
                       ..+..+.||.|| |.-.....++.+.+.|++||++
T Consensus       162 -~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~l  196 (264)
T d1i9ga_         162 -SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVL  196 (264)
T ss_dssp             -CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEE
T ss_pred             -ccccCCCcceEEEecCCHHHHHHHHHhccCCCCEE
Confidence             011224789555 4444457799999999999986

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.69  E-value=0.0033  Score=51.30  Aligned_cols=79  Identities=19%  Similarity=0.272  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCce-Ee--CCCCCCchHHHHHHHHhc--CCcc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FL--NPNDNNEPVQQVIKRITD--GGAD  265 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~-~i--~~~~~~~~~~~~~~~~~~--g~~d  265 (291)
                      +|+++||.|+ +++|.++++-+...|+ +|+.+++++++++.+ ++++... .+  |..+ +++..+.+++...  +++|
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~-~~~i~~~~~~i~~~~g~iD   81 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH   81 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCC-HHHHHHHHHHHHHHhCCcc
Confidence            6899999987 8999999999999999 999999999876655 4566543 22  3322 2333333333322  5799


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +.+.+.|.
T Consensus        82 iLinnAg~   89 (241)
T d2a4ka1          82 GVAHFAGV   89 (241)
T ss_dssp             EEEEGGGG
T ss_pred             Eecccccc
Confidence            99998775

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.68  E-value=0.0012  Score=53.43  Aligned_cols=96  Identities=20%  Similarity=0.184  Sum_probs=65.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce--EeCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~--~i~~~~~~~~~~~~~~~  258 (291)
                      +.+.++++++++||-+|+| .|..+..+++. +. +|+++|.+++.++.|++.    +...  ++.-+.  .++     .
T Consensus         8 l~~~~~~~~~~rILDiGcG-tG~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~--~~~-----~   77 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAG-AGHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA--ESL-----P   77 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCT-TSHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT--TBC-----C
T ss_pred             HHHHhCCCCCCEEEEeCCc-CcHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhccccccccccccccc--ccc-----c
Confidence            5688899999999999986 56777777764 65 999999999888777543    3322  221111  110     1


Q ss_pred             HhcCCccEEEEccC------ChHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIG------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g------~~~~~~~~~~~l~~~G~i  290 (291)
                      +.++.||+|+-+-.      ....++.+.+.|+++|++
T Consensus        78 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~  115 (234)
T d1xxla_          78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRF  115 (234)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEE
Confidence            22347898886322      145688999999999975

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.66  E-value=0.0037  Score=51.31  Aligned_cols=79  Identities=20%  Similarity=0.316  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC--c-eEe--CCCCCCchHHHHHHHHh--cCC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGV--T-EFL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~g~--~-~~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+. +++.  . ..+  |..+ +++..+.+.+..  .|+
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC-HHHHHHHHHHHHHHhCC
Confidence            5789999987 8999999999999999 9999999998877664 3332  1 222  3322 122222333221  258


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++++.|.
T Consensus        83 iDiLVnnAg~   92 (251)
T d1zk4a1          83 VSTLVNNAGI   92 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             ceEEEecccc
Confidence            9999998876

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.0049  Score=50.80  Aligned_cols=90  Identities=21%  Similarity=0.309  Sum_probs=60.4

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-EeCCCCCCchHHHHHHHHhcCCc
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-FLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      ..+++++||-+|+| .|..++.+++ +|+ +|+++|.+++..+.+++    .+... ++.     .+..+   ....+.|
T Consensus       117 ~~~~g~~VLDiGcG-sG~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~-----~d~~~---~~~~~~f  185 (254)
T d2nxca1         117 HLRPGDKVLDLGTG-SGVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE-----GSLEA---ALPFGPF  185 (254)
T ss_dssp             HCCTTCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE-----SCHHH---HGGGCCE
T ss_pred             hcCccCEEEEcccc-hhHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe-----ccccc---ccccccc
Confidence            36799999999986 3666665554 687 89999999998887764    34332 222     12211   1233589


Q ss_pred             cEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          265 DYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      |+|+-+...   ...+....+.|++||++
T Consensus       186 D~V~ani~~~~l~~l~~~~~~~LkpGG~l  214 (254)
T d2nxca1         186 DLLVANLYAELHAALAPRYREALVPGGRA  214 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             chhhhccccccHHHHHHHHHHhcCCCcEE
Confidence            999876544   23456777899999986

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.64  E-value=0.0046  Score=50.82  Aligned_cols=78  Identities=15%  Similarity=0.260  Sum_probs=54.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceE---eCCCCCCchHHHHHHHHh--cCC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF---LNPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~---i~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      |+.+||.|+ +++|++++..+...|+ +|+.+++++++++.+    ++.|....   .|..+ +++..+.+++..  .|+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence            677899987 8999999999999999 999999998876654    34454332   23332 233333333322  258


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++++.|.
T Consensus        80 iDilVnnAG~   89 (257)
T d2rhca1          80 VDVLVNNAGR   89 (257)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEecccc
Confidence            9999999875

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.64  E-value=0.0014  Score=52.92  Aligned_cols=90  Identities=17%  Similarity=0.168  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      ..++.+||-+|+| .|..+..+++ +|+ +|+++|.+++.++.+++-+....+..+.  .++     .+..+.+|+|+..
T Consensus        40 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~--~~l-----~~~~~~fD~ii~~  109 (246)
T d2avna1          40 LKNPCRVLDLGGG-TGKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA--EDL-----PFPSGAFEAVLAL  109 (246)
T ss_dssp             CCSCCEEEEETCT-TCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT--TSC-----CSCTTCEEEEEEC
T ss_pred             cCCCCEEEEECCC-Cchhcccccc-cce-EEEEeecccccccccccccccccccccc--ccc-----ccccccccceeee
Confidence            4577899999997 6888888876 588 9999999999999999877666554432  221     1223479988853


Q ss_pred             cC-------ChHHHHHHHHhhccCccc
Q 022819          271 IG-------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       271 ~g-------~~~~~~~~~~~l~~~G~i  290 (291)
                      ..       ....++.+.++|++||.+
T Consensus       110 ~~~~~~~~d~~~~l~~i~r~Lk~gG~~  136 (246)
T d2avna1         110 GDVLSYVENKDKAFSEIRRVLVPDGLL  136 (246)
T ss_dssp             SSHHHHCSCHHHHHHHHHHHEEEEEEE
T ss_pred             cchhhhhhhHHHHHHHHHhhcCcCcEE
Confidence            32       134577888999999975

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.63  E-value=0.0032  Score=51.69  Aligned_cols=79  Identities=18%  Similarity=0.315  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g  262 (291)
                      +++++||.|+ +++|++++..+...|+ +|+.+++++++++.+    ++.|... .  .|..+ +++..+.+.+..  .|
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTEHK   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence            5788999987 8999999999989999 999999998887654    3345433 2  23332 233333333322  25


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        87 ~iDilvnnag~   97 (251)
T d2c07a1          87 NVDILVNNAGI   97 (251)
T ss_dssp             CCCEEEECCCC
T ss_pred             Cceeeeecccc
Confidence            89999998875

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.63  E-value=0.0051  Score=50.34  Aligned_cols=79  Identities=22%  Similarity=0.224  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh--HHHHHHcCCceE---eCCCCCCchHHHHHHHHh--cCCc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFGVTEF---LNPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~--~~~a~~~g~~~~---i~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++  .+.++++|....   .|..+ +++....+++..  .|++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcCCC
Confidence            5789999987 8999999999999999 89998886543  334566765442   23332 233333333322  2589


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++++.|.
T Consensus        82 DilVnnAG~   90 (247)
T d2ew8a1          82 DILVNNAGI   90 (247)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999886

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.62  E-value=0.0032  Score=52.34  Aligned_cols=79  Identities=22%  Similarity=0.278  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc--e----EeCCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT--E----FLNPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~--~----~i~~~~~~~~~~~~~~~~~-  260 (291)
                      +++++||.|+ +++|++++..+...|+ +|+.+++++++++.+.+    .+..  .    ..|..+ .++..+.+.+.. 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~   81 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK   81 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC-HHHHHHHHHHHHH
Confidence            5788999987 8999999999999999 99999999988775532    3321  1    223332 233333333332 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .|++|+++++.|.
T Consensus        82 ~~g~iDilvnnAG~   95 (272)
T d1xkqa_          82 QFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCceEEEeCCcc
Confidence             2589999998775

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.59  E-value=0.0078  Score=45.72  Aligned_cols=43  Identities=35%  Similarity=0.598  Sum_probs=38.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      +|.|+|.|.+|...+..++..|. +|++.++++++.+.+++.|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~   44 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL   44 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc
Confidence            47889999999999988889998 99999999999999988874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.57  E-value=0.00036  Score=56.74  Aligned_cols=93  Identities=14%  Similarity=0.183  Sum_probs=60.1

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHc---CC---CeEEEEcCChhhHHHHHHc---------CCce--EeCCCCCCchH
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKAR---GA---SRIIGVDTNPEKCEKAKAF---------GVTE--FLNPNDNNEPV  252 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~---g~---~~vi~~~~~~~~~~~a~~~---------g~~~--~i~~~~~~~~~  252 (291)
                      +++++++||.+|+| .|+.++.+++..   |.   .+|++++.+++-.+.+++.         +...  ++..+. ...+
T Consensus        77 ~l~~g~~VLeIGtG-sGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~-~~~~  154 (223)
T d1r18a_          77 HLKPGARILDVGSG-SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG-RKGY  154 (223)
T ss_dssp             TCCTTCEEEEESCT-TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG-GGCC
T ss_pred             ccCCCCeEEEecCC-CCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc-cccc
Confidence            78999999999875 455555555543   42   3799999988876666431         1111  222111 0100


Q ss_pred             HHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCccc
Q 022819          253 QQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       253 ~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~i  290 (291)
                            ...+.||.|+-+.+.+...+..++.|++||++
T Consensus       155 ------~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~l  186 (223)
T d1r18a_         155 ------PPNAPYNAIHVGAAAPDTPTELINQLASGGRL  186 (223)
T ss_dssp             ------GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEE
T ss_pred             ------ccccceeeEEEEeechhchHHHHHhcCCCcEE
Confidence                  11247998888777666678889999999986

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.57  E-value=0.0019  Score=50.59  Aligned_cols=97  Identities=15%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHh
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~-~~i~~~~~~~~~~~~~~~~~  260 (291)
                      ....+++++++||=+|+| .|..++.+|+. +. +|++++.+++.++.+++    .|.. .+--..   .+..+..  ..
T Consensus        26 l~~l~~~~g~~VLDiGcG-sG~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~---gda~~~~--~~   97 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCG-TGGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME---GDAPEAL--CK   97 (186)
T ss_dssp             HHHHCCCTTCEEEEESCT-TSHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE---SCHHHHH--TT
T ss_pred             HHhcCCCCCCEEEEEECC-eEccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEE---Cchhhcc--cc
Confidence            345678999999999875 34445566654 44 99999999998887764    4542 221111   1221121  11


Q ss_pred             cCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                      ...+|.|+-.-..   ...++.+.+.|+++|++
T Consensus        98 ~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~l  130 (186)
T d1l3ia_          98 IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRI  130 (186)
T ss_dssp             SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEE
T ss_pred             cCCcCEEEEeCccccchHHHHHHHHHhCcCCEE
Confidence            2378988754332   45688888999999975

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0043  Score=50.99  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=54.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc-----CCce-E--eCCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF-----GVTE-F--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~-----g~~~-~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      .|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+. ++     +... .  .|..+ +++..+.+.+..  
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~   79 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC-HHHHHHHHHHHHHH
Confidence            5789999987 8999999999999999 9999999998876553 22     1111 1  23332 233333333332  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .|++|+++++.|.
T Consensus        80 ~G~iDilVnnAg~   92 (254)
T d2gdza1          80 FGRLDILVNNAGV   92 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCcCeecccccc
Confidence            2589999999886

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.011  Score=45.81  Aligned_cols=41  Identities=24%  Similarity=0.375  Sum_probs=35.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK  233 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~  233 (291)
                      ++++|+|+|+|+.+.+++..+..+|++.++.+.++.++.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~   57 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDK   57 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHH
Confidence            67899999999999999999999999889999888766553

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.55  E-value=0.0025  Score=52.78  Aligned_cols=79  Identities=18%  Similarity=0.235  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCc----eE--eCCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT----EF--LNPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~----~~--i~~~~~~~~~~~~~~~~~-  260 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+.    +.+..    ..  .|..+ +++..+.+.+.. 
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~   81 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG   81 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC-HHHHHHHHHHHHH
Confidence            6788999987 8999999999999999 9999999998876553    23321    12  24332 233333333332 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .|++|+++++.|.
T Consensus        82 ~~g~iDilvnnAG~   95 (264)
T d1spxa_          82 KFGKLDILVNNAGA   95 (264)
T ss_dssp             HHSCCCEEEECCC-
T ss_pred             HhCCCCEeeccccc
Confidence             2589999999885

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0059  Score=50.24  Aligned_cols=80  Identities=19%  Similarity=0.338  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCc-e--Ee--CCCCCCchHHHHHHHHh-
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FL--NPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~-~--~i--~~~~~~~~~~~~~~~~~-  260 (291)
                      -+++++||.|+ +++|++.+..+...|+ +|+.+++++++++.+    ++.+.. .  .+  |..+ +++..+.+.+.. 
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~v~~~~~   85 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRS   85 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC-HHHHHHHHHHHHH
Confidence            46789999987 8999999999999999 999999999887754    333321 2  22  3332 233333333332 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .+++|+++++.|.
T Consensus        86 ~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          86 QHSGVDICINNAGL   99 (257)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hcCCCCEEEecccc
Confidence             2579999999886

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.54  E-value=0.0071  Score=49.76  Aligned_cols=79  Identities=27%  Similarity=0.252  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----c--CCce-E--eCCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----F--GVTE-F--LNPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~--g~~~-~--i~~~~~~~~~~~~~~~~~--  260 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+.+    .  +... .  .|..+ +++..+.+.+..  
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER   80 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC-HHHHHHHHHHHHHH
Confidence            5789999987 8999999999999999 99999999988765432    2  2222 2  24432 233333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .|++|+++++.|.
T Consensus        81 ~G~iDiLVnnAG~   93 (258)
T d1iy8a_          81 FGRIDGFFNNAGI   93 (258)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCCEEEECCcc
Confidence            2589999998873

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.53  E-value=0.0023  Score=52.81  Aligned_cols=80  Identities=14%  Similarity=0.129  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--Ee--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FL--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|++++..+...|+ +|+.+.++.++.+.+.+    .+...  .+  |......+..+.+.+..  .
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            5899999987 8999999999999999 77666565555443332    22212  22  22211122333333332  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +++|+++.+.|.
T Consensus        83 g~iDilvnnAG~   94 (254)
T d1sbya1          83 KTVDILINGAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEeCCCC
Confidence            489999999986

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0056  Score=51.55  Aligned_cols=80  Identities=15%  Similarity=0.241  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc--------CCce-Ee--CCCCCCchHHHHHHH
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF--------GVTE-FL--NPNDNNEPVQQVIKR  258 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~-~~--------g~~~-~i--~~~~~~~~~~~~~~~  258 (291)
                      -+|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+. ++        +... .+  |..+ +++..+.+++
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~   87 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVKS   87 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC-HHHHHHHHHH
Confidence            47899999987 8999999999999999 9999999988766442 22        2222 22  3322 2333333333


Q ss_pred             Hh--cCCccEEEEccCC
Q 022819          259 IT--DGGADYSFECIGD  273 (291)
Q Consensus       259 ~~--~g~~d~vld~~g~  273 (291)
                      ..  .|++|+++++.|.
T Consensus        88 ~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCeEEEEeeccc
Confidence            32  2479999998875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0047  Score=51.15  Aligned_cols=80  Identities=15%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-----cCCce-EeCCCCCCchHHHH-HHHH--hcC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGVTE-FLNPNDNNEPVQQV-IKRI--TDG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-----~g~~~-~i~~~~~~~~~~~~-~~~~--~~g  262 (291)
                      +|+++||.|+ +++|++++..+...|+ +|+.+++++++++.+.+     .+... .+..+......... +...  ..+
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            6899999987 8999999999999999 99999999998876632     23322 22222111222222 2222  224


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ..|+++.+.|.
T Consensus        92 ~~~~li~nag~  102 (269)
T d1xu9a_          92 GLDMLILNHIT  102 (269)
T ss_dssp             SCSEEEECCCC
T ss_pred             Ccccccccccc
Confidence            78888887665

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.52  E-value=0.006  Score=50.68  Aligned_cols=79  Identities=23%  Similarity=0.289  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCc--e--E--eCCCCCCchHHHHHHHHh-
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT--E--F--LNPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~--~--~--i~~~~~~~~~~~~~~~~~-  260 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++++++.+.    +.+..  .  .  .|..+ +++..+.+.+.. 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   80 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA   80 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC-HHHHHHHHHHHHH
Confidence            5889999987 8999999999999999 9999999998876553    33321  1  2  23332 233333333322 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .|.+|+++++.|.
T Consensus        81 ~~G~iDilVnnAG~   94 (274)
T d1xhla_          81 KFGKIDILVNNAGA   94 (274)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCceEEEeeccc
Confidence             2589999998874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.50  E-value=0.014  Score=41.50  Aligned_cols=86  Identities=14%  Similarity=0.034  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh--hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP--EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~--~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      ++++|||+|+|.+|..-++.+...|+ .|++++...  +...++++-... .+.....+.++         .++++|+-+
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~-~~~~~~~~~dl---------~~~~lv~~a   79 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLT-LVEGPFDETLL---------DSCWLAIAA   79 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCE-EEESSCCGGGG---------TTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCce-eeccCCCHHHh---------CCCcEEeec
Confidence            47899999999999999999999999 777775433  333343332222 22211111221         268899999


Q ss_pred             cCChHHHHHHHHhhccCcc
Q 022819          271 IGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       271 ~g~~~~~~~~~~~l~~~G~  289 (291)
                      ++....-......+++.|.
T Consensus        80 t~d~~~n~~i~~~a~~~~i   98 (113)
T d1pjqa1          80 TDDDTVNQRVSDAAESRRI   98 (113)
T ss_dssp             CSCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHcCC
Confidence            9886555566666666553

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.43  E-value=0.0075  Score=49.35  Aligned_cols=80  Identities=19%  Similarity=0.338  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCC-chHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNN-EPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g--~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~-~~~~~~~~~~~--~g  262 (291)
                      +|+++||.|+ |  ++|+++++.+...|+ +|+..+++++..+.+++    .+....+..+-.+ ++..+.+.+..  .+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            6889999987 5  799999999999999 88888888765554433    3433343332222 22222222221  25


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++++.|.
T Consensus        86 ~iDilVnnag~   96 (256)
T d1ulua_          86 GLDYLVHAIAF   96 (256)
T ss_dssp             SEEEEEECCCC
T ss_pred             CceEEEecccc
Confidence            79999998875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.42  E-value=0.0046  Score=50.93  Aligned_cols=79  Identities=20%  Similarity=0.299  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-----HHcCCce-E--eCCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++++.+     ++.|... .  .|..+ +++..+.+.+..  .
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDADL   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            5789999987 8999999999999999 999999988765433     3345433 2  23332 233333333332  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      |++|+++++.|.
T Consensus        86 g~iDilVnnAg~   97 (260)
T d1h5qa_          86 GPISGLIANAGV   97 (260)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCcEecccccc
Confidence            589999998874

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.42  E-value=0.0065  Score=50.12  Aligned_cols=79  Identities=20%  Similarity=0.228  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-hHH----HHHHcCCceE-e--CCCCCCchHHHHHHHHh--c
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCE----KAKAFGVTEF-L--NPNDNNEPVQQVIKRIT--D  261 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~-~~~----~a~~~g~~~~-i--~~~~~~~~~~~~~~~~~--~  261 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.++++.+ +.+    .+++.|.... +  |..+ +++..+.+++..  .
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKEF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            5788999987 8999999999999999 8998887643 333    3345565432 2  3332 233333333322  2


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      |++|+++++.|.
T Consensus        84 G~iDiLVnnAG~   95 (261)
T d1geea_          84 GKLDVMINNAGL   95 (261)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEeecccee
Confidence            589999998876

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0019  Score=51.07  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=50.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      .++|+|+|+ |.+|..++..+...|. +|.++.++.+++......++..+. -+-  .+. +.+.+.. .++|+||.++|
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~~~-gD~--~d~-~~l~~al-~~~d~vi~~~g   76 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVV-GDV--LQA-ADVDKTV-AGQDAVIVLLG   76 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEE-SCT--TSH-HHHHHHH-TTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccccccccccccc-ccc--cch-hhHHHHh-cCCCEEEEEec
Confidence            468999987 9999999998889998 999999988886544333443322 221  121 2233332 26899999988


Q ss_pred             C
Q 022819          273 D  273 (291)
Q Consensus       273 ~  273 (291)
                      .
T Consensus        77 ~   77 (205)
T d1hdoa_          77 T   77 (205)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.38  E-value=0.0026  Score=50.97  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=65.5

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~  258 (291)
                      +.+..+++++++||-+|+| .|..+..+++. |. +++++|.+++-++.+++    .+.+.  ++..+.  .++     .
T Consensus         7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~--~~l-----~   76 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA--EQM-----P   76 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC---CC-----C
T ss_pred             HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccc--ccc-----c
Confidence            5677899999999999987 56666666654 66 99999999988777754    34332  232221  111     1


Q ss_pred             HhcCCccEEEEccC-----C-hHHHHHHHHhhccCccc
Q 022819          259 ITDGGADYSFECIG-----D-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~~g~~d~vld~~g-----~-~~~~~~~~~~l~~~G~i  290 (291)
                      +..+.||+|+-.-.     . ...+..+.++|++||++
T Consensus        77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l  114 (231)
T d1vl5a_          77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQL  114 (231)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             ccccccccccccccccccCCHHHHHHHHHHhcCCCcEE
Confidence            22347898875422     2 35689999999999975

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.37  E-value=0.014  Score=44.39  Aligned_cols=45  Identities=38%  Similarity=0.620  Sum_probs=39.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      ++|+|+|+|.+|...+..++..|. .+|++++++++.++.+++.+.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~   47 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   47 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc
Confidence            368999999999999999988885 479999999999999998875

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.36  E-value=0.0084  Score=49.16  Aligned_cols=77  Identities=17%  Similarity=0.214  Sum_probs=52.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--cCCc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DGGA  264 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~-~--i~~~~~~~~~~~~~~~~~--~g~~  264 (291)
                      +.+||.|+ +++|++++..+...|+ +|+.+++++++++.+    ++.|... .  .|..+ +++..+.+.+..  .|++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHhCCc
Confidence            34688887 8999999999999999 999999999887654    3345433 2  23332 233333333332  2589


Q ss_pred             cEEEEccCC
Q 022819          265 DYSFECIGD  273 (291)
Q Consensus       265 d~vld~~g~  273 (291)
                      |+++++.|.
T Consensus        80 DilVnnAG~   88 (255)
T d1gega_          80 DVIVNNAGV   88 (255)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecccc
Confidence            999998875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.36  E-value=0.005  Score=51.00  Aligned_cols=80  Identities=21%  Similarity=0.270  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-hhhHH----HHHHcCCceE-eCCCC-CCchHHHHHHHHhc--C
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCE----KAKAFGVTEF-LNPND-NNEPVQQVIKRITD--G  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~-~~~~~----~a~~~g~~~~-i~~~~-~~~~~~~~~~~~~~--g  262 (291)
                      +|+++||.|+ +++|.++++.+...|+ +|+.++++ ++..+    .+++.+.... +..+- ++++..+.+.+...  +
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            4789999987 8999999999999999 88887665 44433    3345565442 22221 12444444444322  4


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        96 ~idilV~nag~  106 (272)
T d1g0oa_          96 KLDIVCSNSGV  106 (272)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCcccccccc
Confidence            78999998875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.31  E-value=0.0053  Score=50.98  Aligned_cols=97  Identities=10%  Similarity=0.090  Sum_probs=66.3

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~---~~i~~~~~~~~~~~~~~  257 (291)
                      +.....+.++.+||-+|+| .|..+..+++..|+ +|++++.++..++.+++.    |..   .++..+.  .++     
T Consensus        59 l~~~~~l~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~--~~l-----  129 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEI-----  129 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSC-----
T ss_pred             HHHhcCCCCCCEEEEeCCC-CcHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccc--ccc-----
Confidence            4556788999999999987 56677788887798 999999999888777653    432   1222221  111     


Q ss_pred             HHhcCCccEEEEcc-----CC-hHHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECI-----GD-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~-----g~-~~~~~~~~~~l~~~G~i  290 (291)
                      .+.++.||+|+-.-     .. ...+..+.++|++||++
T Consensus       130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l  168 (282)
T d2o57a1         130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVM  168 (282)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             cccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEE
Confidence            11224789887521     21 45688999999999986

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.30  E-value=0.015  Score=47.43  Aligned_cols=84  Identities=23%  Similarity=0.313  Sum_probs=53.7

Q ss_pred             cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh-------HHHHHHcCCceE-e--CCCCCCchHHHHHH
Q 022819          189 ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-------CEKAKAFGVTEF-L--NPNDNNEPVQQVIK  257 (291)
Q Consensus       189 ~~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~-------~~~a~~~g~~~~-i--~~~~~~~~~~~~~~  257 (291)
                      -.++|+.++||.|+ +++|++.+..+...|+.+|+.+.+++.+       .+.+++.|.... +  |..+ ..+..+.+.
T Consensus         4 ~~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d-~~~~~~~~~   82 (259)
T d2fr1a1           4 DEWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLG   82 (259)
T ss_dssp             CCCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHH
T ss_pred             cccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch-HHHHHHhhc
Confidence            35789999999987 8999999998888898667777665322       223344565442 2  3332 123333333


Q ss_pred             HHhcC-CccEEEEccCC
Q 022819          258 RITDG-GADYSFECIGD  273 (291)
Q Consensus       258 ~~~~g-~~d~vld~~g~  273 (291)
                      +.... .+|.++.+.|.
T Consensus        83 ~i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          83 GIGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             TSCTTSCEEEEEECCCC
T ss_pred             ccccccccccccccccc
Confidence            33223 68889988875

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.18  E-value=0.0053  Score=50.49  Aligned_cols=80  Identities=19%  Similarity=0.319  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhhHHH----HHHcCCceE-eCCCCC-CchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEK----AKAFGVTEF-LNPNDN-NEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~~~~----a~~~g~~~~-i~~~~~-~~~~~~~~~~~~--~g  262 (291)
                      .|+++||.|+ +++|.++++.+...|+ +|+.+ .++++..+.    +++.|.... +..+-. +++....+.+..  .+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            5899999987 8999999999999999 77664 555554443    345666542 322221 223333333222  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      ++|+++.+.|.
T Consensus        84 ~idilinnag~   94 (259)
T d1ja9a_          84 GLDFVMSNSGM   94 (259)
T ss_dssp             CEEEEECCCCC
T ss_pred             CCcEEEecccc
Confidence            79999998886

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.16  E-value=0.0084  Score=49.36  Aligned_cols=80  Identities=15%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCC-CCchHHHHHHHHh--cC
Q 022819          193 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPND-NNEPVQQVIKRIT--DG  262 (291)
Q Consensus       193 ~~~~vlV~G~-g--~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~-~~~~~~~~~~~~~--~g  262 (291)
                      +|+++||.|+ |  ++|.++++.+...|+ +|+.++++++..+.+++    .+...+...+. .+.+..+.+.+..  .+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            5899999986 5  799999999999999 99999988754443332    22222222221 1233333333332  24


Q ss_pred             CccEEEEccCC
Q 022819          263 GADYSFECIGD  273 (291)
Q Consensus       263 ~~d~vld~~g~  273 (291)
                      .+|+++.+.|.
T Consensus        83 ~id~lV~nag~   93 (274)
T d2pd4a1          83 SLDFIVHSVAF   93 (274)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCeEEeeccc
Confidence            78999988875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.11  E-value=0.01  Score=47.89  Aligned_cols=94  Identities=16%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~-~i~~~~~~~~~~~~~~~~  259 (291)
                      +.......+.++||-+|+|. |..+..+++ .|+ .++++|.+++-++.+++.    +... ++..+.         ..+
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~---------~~l  100 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV---------LEI  100 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG---------GGC
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehhh---------hhc
Confidence            34445667788999999974 777777776 588 999999999988888653    3222 222211         112


Q ss_pred             hc-CCccEEEEccCC---------hHHHHHHHHhhccCccc
Q 022819          260 TD-GGADYSFECIGD---------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~-g~~d~vld~~g~---------~~~~~~~~~~l~~~G~i  290 (291)
                      .. +.||.|+-..+.         ...++.+.+.|++||.+
T Consensus       101 ~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~l  141 (251)
T d1wzna1         101 AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF  141 (251)
T ss_dssp             CCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEE
Confidence            22 378988864332         14678889999999975

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.013  Score=49.32  Aligned_cols=79  Identities=23%  Similarity=0.274  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh---------hhHHH----HHHcCCceEeCCCCCCchHHHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP---------EKCEK----AKAFGVTEFLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~---------~~~~~----a~~~g~~~~i~~~~~~~~~~~~~~~  258 (291)
                      +|+++||.|+ +++|++.+..+...|+ +|+..+++.         ++.+.    .+..+.....+..+ ..+..+.+++
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v~~   83 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLVKT   83 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccch-HHHHHHHHHH
Confidence            5889999987 8999999999999999 898886543         22222    22334444455443 1333333333


Q ss_pred             Hh--cCCccEEEEccCC
Q 022819          259 IT--DGGADYSFECIGD  273 (291)
Q Consensus       259 ~~--~g~~d~vld~~g~  273 (291)
                      ..  .|++|+++++.|.
T Consensus        84 ~~~~~G~iDiLVnNAGi  100 (302)
T d1gz6a_          84 ALDTFGRIDVVVNNAGI  100 (302)
T ss_dssp             HHHHTSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCcc
Confidence            22  2589999999885

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.06  E-value=0.011  Score=48.53  Aligned_cols=79  Identities=25%  Similarity=0.335  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hhHHHH-----HHcCCceE-e--CCCCCCchHHHHHHHHh--
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCEKA-----KAFGVTEF-L--NPNDNNEPVQQVIKRIT--  260 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~-~~~~~a-----~~~g~~~~-i--~~~~~~~~~~~~~~~~~--  260 (291)
                      +|+++||.|+ +++|+++++.+...|+ +|+.+++++ ++++.+     .+.|.... +  |..+ +++..+.+.+..  
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence            6788999987 8999999999999999 999998864 444433     22344432 2  3322 233333333322  


Q ss_pred             cCCccEEEEccCC
Q 022819          261 DGGADYSFECIGD  273 (291)
Q Consensus       261 ~g~~d~vld~~g~  273 (291)
                      .|++|+++++.|.
T Consensus        81 ~G~iDiLVnnAG~   93 (260)
T d1x1ta1          81 MGRIDILVNNAGI   93 (260)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCcEEEeeccc
Confidence            2579999999885

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.03  E-value=0.00076  Score=55.06  Aligned_cols=75  Identities=16%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC----chHHHHHHHHhcC-CccE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN----EPVQQVIKRITDG-GADY  266 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~----~~~~~~~~~~~~g-~~d~  266 (291)
                      ++++|||.|+ +++|++.++.+...|+ +|+.++.++.+..     .....+......    +.....+.+.... ++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc-----cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            5789999987 8999999999999999 9999887654421     111122222111    1223333333333 7999


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ++++.|.
T Consensus        75 lInnAG~   81 (236)
T d1dhra_          75 ILCVAGG   81 (236)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.028  Score=42.74  Aligned_cols=90  Identities=20%  Similarity=0.258  Sum_probs=60.1

Q ss_pred             HHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC
Q 022819          184 AAWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       184 ~l~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ++.+..+ .-.|++++|+|-|-+|...++.++.+|+ +|++++..+-+.-.+.--|.. +.       .+    .+. ..
T Consensus        13 ~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~-v~-------~~----~~a-~~   78 (163)
T d1li4a1          13 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYE-VT-------TM----DEA-CQ   78 (163)
T ss_dssp             HHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC-------CH----HHH-TT
T ss_pred             HHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceE-ee-------eh----hhh-hh
Confidence            3445444 4589999999999999999999999999 999999988664444433432 21       11    111 12


Q ss_pred             CccEEEEccCChHH-HHHHHHhhccC
Q 022819          263 GADYSFECIGDTGM-ITTALQSCCDV  287 (291)
Q Consensus       263 ~~d~vld~~g~~~~-~~~~~~~l~~~  287 (291)
                      ..|+++-++|.... -.+-++.|+++
T Consensus        79 ~adivvtaTGn~~vI~~eh~~~MKdg  104 (163)
T d1li4a1          79 EGNIFVTTTGCIDIILGRHFEQMKDD  104 (163)
T ss_dssp             TCSEEEECSSCSCSBCHHHHTTCCTT
T ss_pred             hccEEEecCCCccchhHHHHHhccCC
Confidence            46888888886432 34445556555

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.97  E-value=0.0026  Score=51.83  Aligned_cols=75  Identities=16%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh--cCCccEEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT--DGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~--~g~~d~vld  269 (291)
                      +++++||.|+ +++|+++++.+...|+ +|+.+++++++.+.+.    ....|..+ +++..+.+.+..  .+++|++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~----~~~~Dv~~-~~~v~~~~~~~~~~~g~iDiLVn   79 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF----GVEVDVTD-SDAVDRAFTAVEEHQGPVEVLVS   79 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE----EEECCTTC-HHHHHHHHHHHHHHHSSCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCce----EEEEecCC-HHHHHHHHHHHHHhcCCceEEEe
Confidence            6789999987 8999999999999999 9999998876643221    12334432 223333333322  247999999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      +.|.
T Consensus        80 nAG~   83 (237)
T d1uzma1          80 NAGL   83 (237)
T ss_dssp             ECSC
T ss_pred             eecc
Confidence            9885

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0061  Score=49.01  Aligned_cols=101  Identities=13%  Similarity=-0.002  Sum_probs=64.3

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce-Ee------------CCCCCC---
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FL------------NPNDNN---  249 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~-~i------------~~~~~~---  249 (291)
                      .+.....++.+||..|+| .|..+..+|+ .|+ +|+++|.+++-++.+++..... ..            ......   
T Consensus        38 ~~~l~~~~~~rvLd~GCG-~G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  114 (229)
T d2bzga1          38 DTFLKGKSGLRVFFPLCG-KAVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISL  114 (229)
T ss_dssp             HHHHTTCCSCEEEETTCT-TCTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEE
T ss_pred             HHhcCCCCCCEEEEeCCC-CcHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEE
Confidence            344567889999999997 4777777776 699 9999999999998886532111 00            000000   


Q ss_pred             --chHHHHHHHHhcCCccEEEEccCC--------hHHHHHHHHhhccCccc
Q 022819          250 --EPVQQVIKRITDGGADYSFECIGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       250 --~~~~~~~~~~~~g~~d~vld~~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                        .++. .+.....+.+|+|+++.--        +..++...++|++||++
T Consensus       115 ~~~d~~-~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~  164 (229)
T d2bzga1         115 YCCSIF-DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQY  164 (229)
T ss_dssp             EESCGG-GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             EEcchh-hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceE
Confidence              0110 0011112378999986431        35678899999999974

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.92  E-value=0.002  Score=52.94  Aligned_cols=75  Identities=12%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC----CceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG----VTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g----~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      |+||.|+ +++|++++..+...|+ +|+..+++.++++.+++.+    ...+.+..+ -..+.+.+.+.. |++|+++++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~-~~~~~~~~~~~~-G~iDiLVnN   78 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE-PAELIEAVTSAY-GQVDVLVSN   78 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS-HHHHHHHHHHHH-SCCCEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH-HHHHHHHHHHHc-CCCCEEEEC
Confidence            7889987 7999999999999999 9999998888877665532    222222211 122333333322 589999987


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .|.
T Consensus        79 Ag~   81 (252)
T d1zmta1          79 DIF   81 (252)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            664

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.007  Score=41.55  Aligned_cols=71  Identities=28%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh--hHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE--KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~--~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      ++++|+|+|.|..|+++++++...|+ +|++.|.+++  ..+.+++ +....+....  ..   .+.     .+|.++-+
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~--~~---~~~-----~~d~vi~S   71 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPGLDKLPE-AVERHTGSLN--DE---WLM-----AADLIVAS   71 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTTGGGSCT-TSCEEESBCC--HH---HHH-----HCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchhHHHHhh-ccceeecccc--hh---hhc-----cCCEEEEC
Confidence            57889999999999999999999999 8999987553  2222222 2222332221  11   222     47999988


Q ss_pred             cCChH
Q 022819          271 IGDTG  275 (291)
Q Consensus       271 ~g~~~  275 (291)
                      .|-+.
T Consensus        72 PGi~~   76 (93)
T d2jfga1          72 PGIAL   76 (93)
T ss_dssp             TTSCT
T ss_pred             CCCCC
Confidence            88643

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.78  E-value=0.014  Score=47.46  Aligned_cols=77  Identities=14%  Similarity=0.256  Sum_probs=49.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHH---HcCCCeEEEEcCChhhHHHHHHc---CCc-eE--eCCCCCCch---HHHHHHHHhc
Q 022819          195 STVVIFGL-GTVGLSVAQGAK---ARGASRIIGVDTNPEKCEKAKAF---GVT-EF--LNPNDNNEP---VQQVIKRITD  261 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~---~~g~~~vi~~~~~~~~~~~a~~~---g~~-~~--i~~~~~~~~---~~~~~~~~~~  261 (291)
                      ++|||.|+ +++|+++++.+.   ..|+ +|+.+++++++.+.++++   +.. .+  .|..+ .++   +.+.+++...
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~   80 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEGVTK   80 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHHHHG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc-HHHHHHHHhhhHHHhh
Confidence            68999987 899999886654   3577 999999998876655432   222 22  24332 233   3334443333


Q ss_pred             -CCccEEEEccCC
Q 022819          262 -GGADYSFECIGD  273 (291)
Q Consensus       262 -g~~d~vld~~g~  273 (291)
                       +.+|+++++.|.
T Consensus        81 ~~~iDiLvnNAg~   93 (248)
T d1snya_          81 DQGLNVLFNNAGI   93 (248)
T ss_dssp             GGCCSEEEECCCC
T ss_pred             cCCcceEEeeccc
Confidence             489999998774

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.77  E-value=0.00077  Score=54.92  Aligned_cols=74  Identities=16%  Similarity=0.289  Sum_probs=46.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCC----chHHHHHHHHh-cCCccEE
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN----EPVQQVIKRIT-DGGADYS  267 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~----~~~~~~~~~~~-~g~~d~v  267 (291)
                      +.+|||.|+ +++|.++++.+...|+ +|+.+++++++...     ....+..+...    ....+.+.... .+.+|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQAD-----SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTSS-----EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhccc-----ccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            457899987 8999999999999999 99999887654211     11122221110    11122223322 3489999


Q ss_pred             EEccCC
Q 022819          268 FECIGD  273 (291)
Q Consensus       268 ld~~g~  273 (291)
                      +++.|.
T Consensus        76 innAG~   81 (235)
T d1ooea_          76 FCVAGG   81 (235)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            998874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.72  E-value=0.016  Score=46.02  Aligned_cols=99  Identities=13%  Similarity=0.009  Sum_probs=63.4

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhcC
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ....++||++||=+|+| .|..+..+++..+-.+|+++|.+++.++.+++    .+-...+..+......    ......
T Consensus        50 ~~l~lkpg~~VLDlGcG-~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~----~~~~~~  124 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAA-SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWK----YSGIVE  124 (209)
T ss_dssp             CCCCCCSSCEEEEETCT-TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGG----TTTTCC
T ss_pred             ccCCCCCCCEEEEeCCc-CCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccc----cccccc
Confidence            34678999999999986 46677788887765599999999988876644    3322233222211111    000111


Q ss_pred             CccEEEEccCC----hHHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGD----TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~----~~~~~~~~~~l~~~G~i  290 (291)
                      .+|+++..+..    ...+..+.+.|++||++
T Consensus       125 ~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l  156 (209)
T d1nt2a_         125 KVDLIYQDIAQKNQIEILKANAEFFLKEKGEV  156 (209)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             eEEEEEecccChhhHHHHHHHHHHHhccCCeE
Confidence            56777765443    23577788899999975

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.64  E-value=0.055  Score=40.23  Aligned_cols=46  Identities=30%  Similarity=0.439  Sum_probs=35.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCce
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTE  241 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~~~  241 (291)
                      +|.++|+|.+|.+.++-+...|..++++.++++++++.+++ +|+..
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~   48 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVET   48 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccc
Confidence            47788999999988875544564599999999998877654 66543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.61  E-value=0.012  Score=47.58  Aligned_cols=99  Identities=14%  Similarity=0.121  Sum_probs=65.5

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~----g~~~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      +...+++|++||=+|+| .|..+..+|+..|. .+|++++.+++.++.+++.    +....+..+.....   ... ...
T Consensus        67 ~~l~i~pG~~VLDlGaG-sG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~---~~~-~~~  141 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIA-SGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE---EYR-ALV  141 (227)
T ss_dssp             CCCCCCTTCEEEEETTT-STTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG---GGT-TTC
T ss_pred             cccccCCCCEEEEeccC-CCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcc---ccc-ccc
Confidence            45678999999999986 57888899998763 3899999999988877653    22222222211111   111 111


Q ss_pred             CCccEEEEccCC----hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIGD----TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g~----~~~~~~~~~~l~~~G~i  290 (291)
                      ..+|+++..+..    ...+..+...|+++|++
T Consensus       142 ~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~l  174 (227)
T d1g8aa_         142 PKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYG  174 (227)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             cceEEEEEEccccchHHHHHHHHHHhcccCCeE
Confidence            367888765543    23578888899999975

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.61  E-value=0.031  Score=42.72  Aligned_cols=44  Identities=16%  Similarity=0.163  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      ..++++|+|+|+|+.+.+++..+...+ .+++.+.|+.++.+.+.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~   58 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELA   58 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHH
Confidence            347889999999999999998887755 48999999988866553

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.60  E-value=0.058  Score=40.51  Aligned_cols=44  Identities=27%  Similarity=0.415  Sum_probs=38.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      +|-|+|.|.+|...+.-+...|. .|++.++++++.+.+++.++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~   45 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAE   45 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhh
Confidence            47788999999999988888899 999999999999988877653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.031  Score=45.28  Aligned_cols=81  Identities=15%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCC-chHHHHHHHHhc--
Q 022819          192 SKGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNN-EPVQQVIKRITD--  261 (291)
Q Consensus       192 ~~~~~vlV~G~-g--~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~-~~~~~~~~~~~~--  261 (291)
                      =+++++||+|+ +  ++|.+.+..+...|+ +|+.++++++..+.+++    .+....+..+..+ .+....+.+...  
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            36899999986 5  688999999999999 88888888776555433    3444433322211 223333333322  


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +..|+.+++.+.
T Consensus        82 ~~~d~~v~~a~~   93 (258)
T d1qsga_          82 PKFDGFVHSIGF   93 (258)
T ss_dssp             SSEEEEEECCCC
T ss_pred             cccceEEEeecc
Confidence            378999987654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.39  E-value=0.027  Score=45.31  Aligned_cols=99  Identities=19%  Similarity=0.251  Sum_probs=66.3

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHH----
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRI----  259 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~----  259 (291)
                      .+....++||-+|.+ .|..++.+|+++.- .+++.++.+++..+.+++    .|...-+....  .+..+.+.++    
T Consensus        55 ~~~~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~--g~a~~~L~~l~~~~  131 (227)
T d1susa1          55 LKLINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE--GPALPVLDEMIKDE  131 (227)
T ss_dssp             HHHHTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHCG
T ss_pred             HHhcCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee--hHHHHHHHHHHhcc
Confidence            444567899999875 68889999988741 399999999998887765    45543222211  2333444443    


Q ss_pred             -hcCCccEEE-EccCC--hHHHHHHHHhhccCccc
Q 022819          260 -TDGGADYSF-ECIGD--TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 -~~g~~d~vl-d~~g~--~~~~~~~~~~l~~~G~i  290 (291)
                       ..+.||.|| |.--.  ...++.++.+|++||.|
T Consensus       132 ~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGii  166 (227)
T d1susa1         132 KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVI  166 (227)
T ss_dssp             GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCE
T ss_pred             ccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEE
Confidence             234799766 43222  46789999999999975

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.013  Score=47.50  Aligned_cols=47  Identities=30%  Similarity=0.357  Sum_probs=39.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCc
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT  240 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~  240 (291)
                      +|+++||.|+ +++|.++++.+...|+ +|+.+++++++++.+ ++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC
Confidence            6899999987 8999999999999999 899999988876654 456543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.34  E-value=0.017  Score=46.60  Aligned_cols=97  Identities=12%  Similarity=0.068  Sum_probs=62.5

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC----CceEeCCCCCCchHHHHHHHHhcC
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG----VTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g----~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      +...+++|++||=+|+| .|..+..+|+...-..|++++.+++.++.+++.-    ....+..+.....      .....
T Consensus        68 ~~l~ikpG~~VLDlGcG-sG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~------~~~~~  140 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGAS-AGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ------EYANI  140 (230)
T ss_dssp             CCCCCCTTCEEEEESCC-SSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG------GGTTT
T ss_pred             HhCCCCCCCEEEEeCEE-cCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc------ccccc
Confidence            55678999999999986 5777788888653348999999999888776642    1122222221111      11112


Q ss_pred             --CccEEEEccCC----hHHHHHHHHhhccCccc
Q 022819          263 --GADYSFECIGD----TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 --~~d~vld~~g~----~~~~~~~~~~l~~~G~i  290 (291)
                        .+|+++..+..    ...+..+...|+++|++
T Consensus       141 ~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~  174 (230)
T d1g8sa_         141 VEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYG  174 (230)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             cceeEEeeccccchHHHHHHHHHHHHhcccCceE
Confidence              45566665443    34477778889999874

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.31  E-value=0.022  Score=44.91  Aligned_cols=47  Identities=43%  Similarity=0.580  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      .|.+|+|.|.|.+|..+++.+...|+ +|++.+.+.++...+..+|..
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~   72 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT   72 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccc
Confidence            78999999999999999999999999 999999999999888887754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.037  Score=45.49  Aligned_cols=78  Identities=19%  Similarity=0.350  Sum_probs=49.4

Q ss_pred             CCCEE-EEEcC-ChHHHHHHHH-HHHcCCCeEEEEcCChhhHHHHH----HcCCce-E--eCCCCCCchH---HHHHHHH
Q 022819          193 KGSTV-VIFGL-GTVGLSVAQG-AKARGASRIIGVDTNPEKCEKAK----AFGVTE-F--LNPNDNNEPV---QQVIKRI  259 (291)
Q Consensus       193 ~~~~v-lV~G~-g~~G~~~i~~-a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~-~--i~~~~~~~~~---~~~~~~~  259 (291)
                      +|++| ||.|+ +++|+++++. ++..|+ +|+.+++++++.+.+.    +.+... +  .|..+ .++.   .+.+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~-~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCC-HHHHHHHHHHHHHh
Confidence            46777 55687 8999988764 555588 9999999998876542    334322 2  23332 1222   2333332


Q ss_pred             hcCCccEEEEccCC
Q 022819          260 TDGGADYSFECIGD  273 (291)
Q Consensus       260 ~~g~~d~vld~~g~  273 (291)
                       .+++|+++++.|.
T Consensus        79 -~g~iDiLVnNAGi   91 (275)
T d1wmaa1          79 -YGGLDVLVNNAGI   91 (275)
T ss_dssp             -HSSEEEEEECCCC
T ss_pred             -cCCcEEEEEcCCc
Confidence             2479999999885

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.26  E-value=0.04  Score=41.73  Aligned_cols=90  Identities=24%  Similarity=0.354  Sum_probs=61.8

Q ss_pred             HHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCC
Q 022819          185 AWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGG  263 (291)
Q Consensus       185 l~~~~~-~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~  263 (291)
                      +.+..+ .-.|++++|.|-|-+|...++-++.+|+ +|++++.++-+.-.|.--|.. +.       ..    .+. -..
T Consensus        13 i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf~-v~-------~~----~~a-~~~   78 (163)
T d1v8ba1          13 LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-VV-------TL----DEI-VDK   78 (163)
T ss_dssp             HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-EC-------CH----HHH-TTT
T ss_pred             HHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCCc-cC-------ch----hHc-ccc
Confidence            334444 4689999999999999999999999999 999999888654333322332 21       11    111 125


Q ss_pred             ccEEEEccCChHH-HHHHHHhhccCc
Q 022819          264 ADYSFECIGDTGM-ITTALQSCCDVR  288 (291)
Q Consensus       264 ~d~vld~~g~~~~-~~~~~~~l~~~G  288 (291)
                      .|+++-++|..+. -.+-++.|+++.
T Consensus        79 aDi~vTaTGn~~vI~~~h~~~MKdga  104 (163)
T d1v8ba1          79 GDFFITCTGNVDVIKLEHLLKMKNNA  104 (163)
T ss_dssp             CSEEEECCSSSSSBCHHHHTTCCTTC
T ss_pred             CcEEEEcCCCCccccHHHHHHhhCCe
Confidence            7999999998653 345566777664

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.25  E-value=0.0048  Score=51.61  Aligned_cols=101  Identities=12%  Similarity=-0.003  Sum_probs=61.7

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHHHhc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~-~i~~~~~~~~~~~~~~~~~~  261 (291)
                      +..+.+++.+||-+|+| .|..++.+++. |+ .|+++|.+++-++.|++.    +... .........++...-.....
T Consensus        50 ~~l~~~~~~~vLD~GcG-~G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (292)
T d1xvaa_          50 GLLRQHGCHRVLDVACG-TGVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA  126 (292)
T ss_dssp             HHHHHTTCCEEEESSCT-TSHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC
T ss_pred             HHhhhcCCCEEEEecCC-CcHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC
Confidence            34445677899999986 57777788775 88 999999999988887652    1111 00000000111111122222


Q ss_pred             C-CccEEEEccCC--------------hHHHHHHHHhhccCccc
Q 022819          262 G-GADYSFECIGD--------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g-~~d~vld~~g~--------------~~~~~~~~~~l~~~G~i  290 (291)
                      . .+|.|+...+.              ...++.+.+.|++||.+
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  170 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL  170 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEE
T ss_pred             CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEE
Confidence            3 78988853321              12689999999999976

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.10  E-value=0.023  Score=44.68  Aligned_cols=90  Identities=17%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHHHhcCCcc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~-~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      +.++.+||-+|+| .|..+..+++ .|. +|+++|.+++.++.+++.    +... .+..+.  .++     .+.++.+|
T Consensus        35 l~~~~~ILDiGcG-~G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~--~~l-----~~~~~~fD  104 (226)
T d1ve3a1          35 MKKRGKVLDLACG-VGGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA--RKL-----SFEDKTFD  104 (226)
T ss_dssp             CCSCCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT--TSC-----CSCTTCEE
T ss_pred             cCCCCEEEEECCC-cchhhhhHhh-hhc-ccccccccccchhhhhhhhcccccccccccccc--ccc-----cccCcCce
Confidence            5688899999987 4777777776 477 999999999988887652    3222 222211  110     01123789


Q ss_pred             EEEEccCC--------hHHHHHHHHhhccCccc
Q 022819          266 YSFECIGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                      +|+-.-.-        ...++.+.+.|++||++
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~l  137 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKF  137 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHHcCcCcEE
Confidence            87753221        23578889999999975

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.07  E-value=0.039  Score=43.19  Aligned_cols=72  Identities=21%  Similarity=0.170  Sum_probs=45.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~-~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      .||||+|+ |.+|..++..+...|.+ .++.+.+++++...+.. +...+ .|..+  ..   .+.+.. .++|.|+.+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~--~~---~~~~~~-~~~d~vi~~a   76 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITD--AD---SINPAF-QGIDALVILT   76 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTS--HH---HHHHHH-TTCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeecc--cc---cccccc-ccceeeEEEE
Confidence            68999987 99999999999988852 57777787776554322 22222 22221  22   222222 2689999887


Q ss_pred             CC
Q 022819          272 GD  273 (291)
Q Consensus       272 g~  273 (291)
                      +.
T Consensus        77 ~~   78 (252)
T d2q46a1          77 SA   78 (252)
T ss_dssp             CC
T ss_pred             ee
Confidence            63

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.07  E-value=0.018  Score=47.33  Aligned_cols=90  Identities=19%  Similarity=0.118  Sum_probs=58.6

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHhc-
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRITD-  261 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~---~~i~~~~~~~~~~~~~~~~~~-  261 (291)
                      .++++++||-.++| +|..++.+|+.-++ +|++++.+++..+++++    .+..   .++..+.  .       ++.. 
T Consensus       104 ~~~~g~~VlD~~aG-~G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~--~-------~~~~~  172 (260)
T d2frna1         104 VAKPDELVVDMFAG-IGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN--R-------DFPGE  172 (260)
T ss_dssp             HCCTTCEEEETTCT-TTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT--T-------TCCCC
T ss_pred             hcCCccEEEECcce-EcHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch--H-------HhccC
Confidence            36899999998764 45555566765445 99999999998888864    2432   2333321  1       1222 


Q ss_pred             CCccEEE-Ecc-CChHHHHHHHHhhccCccc
Q 022819          262 GGADYSF-ECI-GDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vl-d~~-g~~~~~~~~~~~l~~~G~i  290 (291)
                      +.+|.|+ +-. .+...+..+++.+++||.|
T Consensus       173 ~~~D~Ii~~~p~~~~~~l~~a~~~l~~gG~l  203 (260)
T d2frna1         173 NIADRILMGYVVRTHEFIPKALSIAKDGAII  203 (260)
T ss_dssp             SCEEEEEECCCSSGGGGHHHHHHHEEEEEEE
T ss_pred             CCCCEEEECCCCchHHHHHHHHhhcCCCCEE
Confidence            3688554 432 3456788999999999865

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0045  Score=52.38  Aligned_cols=44  Identities=30%  Similarity=0.434  Sum_probs=32.2

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC  231 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~  231 (291)
                      .+.....++++||.+|+| .|..++.+|+ +|+++|++++.++.-.
T Consensus        28 ~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~   71 (311)
T d2fyta1          28 YQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILY   71 (311)
T ss_dssp             HHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHH
T ss_pred             HhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHH
Confidence            334456789999999987 5666666665 5877999999887543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.78  E-value=0.066  Score=43.41  Aligned_cols=81  Identities=12%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhhH-H-HHHHcCCce---EeCCCCC--CchHHHHHHHHhc
Q 022819          192 SKGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKC-E-KAKAFGVTE---FLNPNDN--NEPVQQVIKRITD  261 (291)
Q Consensus       192 ~~~~~vlV~G~-g--~~G~~~i~~a~~~g~~~vi~~~~~~~~~-~-~a~~~g~~~---~i~~~~~--~~~~~~~~~~~~~  261 (291)
                      =+|+++||.|+ |  ++|+++++.+...|+ +|+.+.+++++. + ..++++...   ..|..+.  ..+..+.+.+...
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            46899999984 4  599999999999999 888888877765 3 234455332   2233220  0233444444332


Q ss_pred             --CCccEEEEccCC
Q 022819          262 --GGADYSFECIGD  273 (291)
Q Consensus       262 --g~~d~vld~~g~  273 (291)
                        +..|+++.+.|.
T Consensus        83 ~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          83 AGNKLDGVVHSIGF   96 (268)
T ss_dssp             TTCCEEEEEECCCC
T ss_pred             cCCCcceeeecccc
Confidence              368999998874

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.72  E-value=0.14  Score=38.12  Aligned_cols=95  Identities=16%  Similarity=0.206  Sum_probs=62.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCChh---hHHHHHHcCCceEeCCCCCC-ch--------------H
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPE---KCEKAKAFGVTEFLNPNDNN-EP--------------V  252 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~--g~~~vi~~~~~~~---~~~~a~~~g~~~~i~~~~~~-~~--------------~  252 (291)
                      .++|.|+|+ |.+|..++.+.+..  .+ +|+++..+..   -.+.++++....+...++.. ..              .
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g   80 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAG   80 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccC
Confidence            478999998 99999999999876  45 7777755443   23455778877765443210 00              1


Q ss_pred             HHHHHHHhcCCccEEEEccCChHHHHHHHHhhccCcc
Q 022819          253 QQVIKRITDGGADYSFECIGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       253 ~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~G~  289 (291)
                      .+.+.+.....+|+++..+.+...+.-.+..++.+-+
T Consensus        81 ~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~  117 (150)
T d1r0ka2          81 ADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKT  117 (150)
T ss_dssp             HHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSE
T ss_pred             ccchheecccccceeeeecCchhHHHHHHHHHhcCCE
Confidence            1122233223689999998887778888888877644

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.65  E-value=0.1  Score=35.69  Aligned_cols=73  Identities=18%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             CCCCCCEEEEEcCChHHHHH-HHHHHHcCCCeEEEEcCCh-hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEE
Q 022819          190 DISKGSTVVIFGLGTVGLSV-AQGAKARGASRIIGVDTNP-EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~-i~~a~~~g~~~vi~~~~~~-~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      ..+..+++.++|.|++|+.+ +++++.+|. .|.+.|... +..+.+++.|+.....++.  ...         ..+|.|
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~--~~i---------~~~d~v   71 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE--EHI---------EGASVV   71 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG--GGG---------TTCSEE
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc--ccC---------CCCCEE
Confidence            34667889999998899777 799999999 999998763 4456667788876654432  211         257888


Q ss_pred             EEccCCh
Q 022819          268 FECIGDT  274 (291)
Q Consensus       268 ld~~g~~  274 (291)
                      +-+.+-+
T Consensus        72 V~S~AI~   78 (96)
T d1p3da1          72 VVSSAIK   78 (96)
T ss_dssp             EECTTSC
T ss_pred             EECCCcC
Confidence            8776653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.64  E-value=0.028  Score=47.69  Aligned_cols=96  Identities=20%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh-cC-Cc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT-DG-GA  264 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~~-~g-~~  264 (291)
                      ++++++||=.++| .|..++.+|+ .|+.+|++++.+++.++.+++    .|...-+....  .+..+.+..+. .+ .|
T Consensus       143 ~~~g~~VLDl~~g-~G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~--~d~~~~~~~~~~~~~~f  218 (324)
T d2as0a2         143 VQPGDRVLDVFTY-TGGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV--GSAFEEMEKLQKKGEKF  218 (324)
T ss_dssp             CCTTCEEEETTCT-TTHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHTTCCE
T ss_pred             cCCCCeeecccCc-ccchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee--chhhhhhHHHHhccCCC
Confidence            5789999888653 2333344444 477799999999999888864    34422111111  23334444332 23 89


Q ss_pred             cEEEEccCC---------------hHHHHHHHHhhccCccc
Q 022819          265 DYSFECIGD---------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld~~g~---------------~~~~~~~~~~l~~~G~i  290 (291)
                      |+|+--...               ...+..++++|++||.|
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~l  259 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGIL  259 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence            977742221               23567788899999975

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.036  Score=43.25  Aligned_cols=40  Identities=33%  Similarity=0.446  Sum_probs=35.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      ++|.|+|+|.+|...++++...|. .|+.++.+++.++.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHH
Confidence            589999999999999999999999 9999999998776554

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.59  E-value=0.055  Score=44.95  Aligned_cols=74  Identities=23%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-----ChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEE
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-----NPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSF  268 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-----~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vl  268 (291)
                      +|||+|+ |.+|..++..+...|. +|+++++     ..+++..++..+--.++.-+-.+.+   .+.+...+ .+|+||
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~---~l~~~~~~~~~d~Vi   77 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKN---DVTRLITKYMPDSCF   77 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHH---HHHHHHHHHCCSEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHH---HHHHHHHhcCCceEE
Confidence            6999987 9999999999998998 8999863     1123344444433233322221122   23333334 789999


Q ss_pred             EccCC
Q 022819          269 ECIGD  273 (291)
Q Consensus       269 d~~g~  273 (291)
                      .+.+.
T Consensus        78 h~aa~   82 (338)
T d1orra_          78 HLAGQ   82 (338)
T ss_dssp             ECCCC
T ss_pred             eeccc
Confidence            98764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.56  E-value=0.13  Score=38.48  Aligned_cols=45  Identities=20%  Similarity=0.272  Sum_probs=38.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT  240 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~  240 (291)
                      ++|-++|.|.+|...+.-+...|. .|.+.+++.++.+.+.+.++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~   46 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGAS   46 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcc
Confidence            368889999999988888888898 999999999998888777653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.54  E-value=0.12  Score=38.75  Aligned_cols=78  Identities=18%  Similarity=0.272  Sum_probs=46.8

Q ss_pred             CEEEEEcCChHHH-HHHHHHHHcCCCeEEEE-cCCh--hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          195 STVVIFGLGTVGL-SVAQGAKARGASRIIGV-DTNP--EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       195 ~~vlV~G~g~~G~-~~i~~a~~~g~~~vi~~-~~~~--~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      =++.|+|+|.+|. ..+++.+....-.++++ +++.  ....+++++|.....      ......+.......+|+||.+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~------~~~d~l~~~~~~~~iDiVf~A   78 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------AGVEGLIKLPEFADIDFVFDA   78 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------SHHHHHHHSGGGGGEEEEEEC
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc------cceeeeeecccccccCEEEEc
Confidence            4688999999987 45677776543356665 4443  345678888875432      222222222212368999998


Q ss_pred             cCChHHHH
Q 022819          271 IGDTGMIT  278 (291)
Q Consensus       271 ~g~~~~~~  278 (291)
                      +......+
T Consensus        79 Tpag~h~~   86 (157)
T d1nvmb1          79 TSASAHVQ   86 (157)
T ss_dssp             SCHHHHHH
T ss_pred             CCchhHHH
Confidence            87543433

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.52  E-value=0.074  Score=42.93  Aligned_cols=77  Identities=18%  Similarity=0.287  Sum_probs=48.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--cCC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DGG  263 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~-~~~~~~~~~a----~~~g~~~-~i--~~~~~~~~~~~~~~~~~--~g~  263 (291)
                      ..+||.|+ +++|+++++.+...|+ +|+.. .+++++.+.+    ++.|... .+  |..+ +++..+.+++..  .|+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcCC
Confidence            35677786 8999999999999999 77765 5566655544    3445433 22  3332 223333333322  258


Q ss_pred             ccEEEEccCC
Q 022819          264 ADYSFECIGD  273 (291)
Q Consensus       264 ~d~vld~~g~  273 (291)
                      +|+++++.|.
T Consensus        80 iDiLVnnAg~   89 (244)
T d1edoa_          80 IDVVVNNAGI   89 (244)
T ss_dssp             CSEEEECCCC
T ss_pred             CCcccccccc
Confidence            9999998875

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.48  E-value=0.087  Score=42.23  Aligned_cols=47  Identities=28%  Similarity=0.416  Sum_probs=40.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGV  239 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~-~g~  239 (291)
                      -.+.+|+|.|-|.+|..+++++..+|+ ++++++.+..+.+.+.. .|.
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~   84 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGA   84 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCC
Confidence            368999999999999999999999999 99999998888776653 443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.035  Score=44.33  Aligned_cols=100  Identities=14%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHH-
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRI-  259 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~-  259 (291)
                      ...+....++||-+|.+ .|..++.+|+++  +. +++.++.+++..+.+++    .|....+....  .+..+.+.++ 
T Consensus        53 ~L~~~~~~k~vLEiGt~-~GyStl~~a~al~~~g-~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~--Gda~e~l~~~~  128 (219)
T d2avda1          53 NLARLIQAKKALDLGTF-TGYSALALALALPADG-RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL--KPALETLDELL  128 (219)
T ss_dssp             HHHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHHHH
T ss_pred             HHHHccCCCeEEEEech-hhHHHHHHHHhCCCCc-eEEEEeechhHHHHHHHHHHhcCccceEEEEE--eehhhcchhhh
Confidence            33445667899999875 688888888876  44 99999999998777765    35433222211  2233333333 


Q ss_pred             ---hcCCccEEEEccCC---hHHHHHHHHhhccCccc
Q 022819          260 ---TDGGADYSFECIGD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ---~~g~~d~vld~~g~---~~~~~~~~~~l~~~G~i  290 (291)
                         ..+.||.||--...   ...++.+++.|++||.|
T Consensus       129 ~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvi  165 (219)
T d2avda1         129 AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGIL  165 (219)
T ss_dssp             HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEE
T ss_pred             hhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEE
Confidence               23378977753332   35688999999999865

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.46  E-value=0.054  Score=43.66  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=50.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCC------eEEEEcCChhhHHHHH----HcCCce-Ee--CCCCCCchHHHHHHHHh-
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGAS------RIIGVDTNPEKCEKAK----AFGVTE-FL--NPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~------~vi~~~~~~~~~~~a~----~~g~~~-~i--~~~~~~~~~~~~~~~~~-  260 (291)
                      .+||.|+ +++|++.+..+...|++      .|+..++++++++.+.    +.|... .+  |..+ .++..+.+.+.. 
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~   81 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHH
Confidence            4678887 89999999988888983      2888899988876553    345433 22  3332 233333333322 


Q ss_pred             -cCCccEEEEccCC
Q 022819          261 -DGGADYSFECIGD  273 (291)
Q Consensus       261 -~g~~d~vld~~g~  273 (291)
                       .|.+|+++++.|.
T Consensus        82 ~~g~iDilvnnAg~   95 (240)
T d2bd0a1          82 RYGHIDCLVNNAGV   95 (240)
T ss_dssp             HTSCCSEEEECCCC
T ss_pred             HcCCcceeeccccc
Confidence             2589999998885

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=94.38  E-value=0.062  Score=42.48  Aligned_cols=89  Identities=13%  Similarity=0.179  Sum_probs=57.8

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHH---cCCCeEEEEcCChhhHHHHHHc----CCce---EeCCCCCCchHHHHHHHHh
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKA---RGASRIIGVDTNPEKCEKAKAF----GVTE---FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~---~g~~~vi~~~~~~~~~~~a~~~----g~~~---~i~~~~~~~~~~~~~~~~~  260 (291)
                      .+++.+||-+|+| .|..+..+++.   .++ +|+++|.+++-++.|++.    +...   ..+.+.         ..+.
T Consensus        37 ~~~~~~vLDlGCG-tG~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~---------~~~~  105 (225)
T d1im8a_          37 VTADSNVYDLGCS-RGAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI---------RHVE  105 (225)
T ss_dssp             CCTTCEEEEESCT-TCHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT---------TTCC
T ss_pred             cCCCCEEEEeccc-hhhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh---------hccc
Confidence            6788999999986 46666677764   466 999999999998888752    2221   122111         1111


Q ss_pred             cCCccEEEEccCC--------hHHHHHHHHhhccCccc
Q 022819          261 DGGADYSFECIGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~vld~~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                      ...+|+++-+..-        ...++.+.+.|++||.+
T Consensus       106 ~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~l  143 (225)
T d1im8a_         106 IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL  143 (225)
T ss_dssp             CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCcee
Confidence            2255665543221        25688999999999975

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.31  E-value=0.0042  Score=52.73  Aligned_cols=92  Identities=22%  Similarity=0.256  Sum_probs=53.3

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhc
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~---~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ..+.++++||-+|+|. |..++.+|+ +|+++|++++.++.- ..+    ++-+...   ++..+.  .++     +...
T Consensus        29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~--~~~-----~~~~   98 (316)
T d1oria_          29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKV--EEV-----ELPV   98 (316)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCT--TTC-----CCSS
T ss_pred             cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccH--HHc-----cccc
Confidence            3456899999999873 666666666 687789999987643 333    2223221   222221  110     0111


Q ss_pred             CCccEEEEc-cCC--------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFEC-IGD--------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~-~g~--------~~~~~~~~~~l~~~G~i  290 (291)
                      ..+|+|+.. .+.        +..+....++|+++|++
T Consensus        99 ~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~i  136 (316)
T d1oria_          99 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI  136 (316)
T ss_dssp             SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred             ceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEE
Confidence            378887652 221        34555666899999975

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.30  E-value=0.072  Score=41.22  Aligned_cols=95  Identities=14%  Similarity=0.054  Sum_probs=60.0

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCc---e-EeCCCCCCchHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---E-FLNPNDNNEPVQQVI  256 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~---~-~i~~~~~~~~~~~~~  256 (291)
                      +.+.....++++||-+|+| .|..++.+++ .+. +|++++.+++..+.+++    .+..   . ++..+.  .      
T Consensus        44 Li~~l~~~~~~~VLDiGcG-~G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~--~------  112 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCG-YGVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--Y------  112 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCT-TSHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--T------
T ss_pred             HHHhCCcCCCCeEEEEeec-CChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcch--h------
Confidence            3456677899999999875 4555556665 455 99999999988888764    2321   1 222211  0      


Q ss_pred             HHHhcCCccEEEEccC---C----hHHHHHHHHhhccCccc
Q 022819          257 KRITDGGADYSFECIG---D----TGMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~~~g~~d~vld~~g---~----~~~~~~~~~~l~~~G~i  290 (291)
                      ....++.+|+|+-...   +    ...++.+.+.|+++|++
T Consensus       113 ~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l  153 (194)
T d1dusa_         113 ENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             TTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             hhhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEE
Confidence            1112247998885321   1    23477888899999975

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.19  E-value=0.031  Score=44.93  Aligned_cols=87  Identities=11%  Similarity=0.078  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-EeCCCCCCchHHHHHHHHh-cCCcc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-FLNPNDNNEPVQQVIKRIT-DGGAD  265 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~i~~~~~~~~~~~~~~~~~-~g~~d  265 (291)
                      .++++||-+|+| .|..+..+++ +|. +++++|.+++-++.|++    .+... ++.-+         +..+. .+.||
T Consensus        36 ~~~~~vLDiGCG-~G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d---------~~~~~~~~~fD  103 (246)
T d1y8ca_          36 LVFDDYLDLACG-TGNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD---------ISNLNINRKFD  103 (246)
T ss_dssp             CCTTEEEEETCT-TSTTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCC---------GGGCCCSCCEE
T ss_pred             CCCCeEEEEeCc-CCHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeeccc---------hhhhccccccc
Confidence            446789999986 4566666665 477 99999999998888765    23332 33221         11121 34799


Q ss_pred             EEEEccCC----------hHHHHHHHHhhccCccc
Q 022819          266 YSFECIGD----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       266 ~vld~~g~----------~~~~~~~~~~l~~~G~i  290 (291)
                      +|+...+.          ...++.+.+.|++||.+
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~  138 (246)
T d1y8ca_         104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVF  138 (246)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEE
Confidence            99853221          13577888899999975

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.16  E-value=0.022  Score=43.79  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      +++|+|+|+|+.|+.++..+..+|.+.|.++++++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            578999999999999999999999855778877553

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.14  E-value=0.15  Score=40.92  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK  230 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~  230 (291)
                      +.||+|+ +++|.+++..+...|+ +|+.++++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence            5678887 8999999999999999 99999887554

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.037  Score=39.20  Aligned_cols=35  Identities=29%  Similarity=0.522  Sum_probs=31.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhh
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK  230 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~  230 (291)
                      .+|.|+|+|.+|++.++.|+.+|. ++++++.+++.
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~~   46 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYADA   46 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTTC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCCC
Confidence            569999999999999999999999 99999876653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.021  Score=37.77  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhh
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK  230 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~  230 (291)
                      ++|.|+|+|.+|++.++.++.+|. ++++++.+++-
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCC
Confidence            478999999999999999999999 89999765443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.41  Score=35.06  Aligned_cols=76  Identities=9%  Similarity=0.108  Sum_probs=49.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhH-HHH---HHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC-EKA---KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~-~~a---~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      .+.++|.|.|.+|..+++.+...|. .+++++.++++. +.+   +..|...+. -+   ..-.+.+++..-..+|.++-
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~vi~-Gd---~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIP-GD---SNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEE-SC---TTSHHHHHHHTTTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcEEEE-cc---CcchHHHHHhccccCCEEEE
Confidence            3568899999999999999999998 788887776542 222   223443332 21   12233455554347888988


Q ss_pred             ccCCh
Q 022819          270 CIGDT  274 (291)
Q Consensus       270 ~~g~~  274 (291)
                      +++..
T Consensus        78 ~~~~d   82 (153)
T d1id1a_          78 LSDND   82 (153)
T ss_dssp             CSSCH
T ss_pred             ccccH
Confidence            88763

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.02  E-value=0.049  Score=45.96  Aligned_cols=45  Identities=22%  Similarity=0.343  Sum_probs=37.6

Q ss_pred             CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          190 DISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       190 ~~~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      -+.+|++|||+|+ |-+|..++..+...|. .|+++.++.++.+.++
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            3577999999987 9999999998888898 9999888877666543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.95  E-value=0.06  Score=44.81  Aligned_cols=94  Identities=13%  Similarity=0.110  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC---------CceEeCCCCCCchHHHHHHHHhcC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG---------VTEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g---------~~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      .+.++|||+|.|. |..+-.+++....+++.+++-+++-.+.++++-         ...-+..    .+..+.+++...+
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~----~Da~~~l~~~~~~  153 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI----GDGVAFLKNAAEG  153 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE----SCHHHHHHTSCTT
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE----ccHHHHHhhcccc
Confidence            4568999997642 334446677767668999999999999888752         1111111    3455666665455


Q ss_pred             CccEEE-EccC---------ChHHHHHHHHhhccCccc
Q 022819          263 GADYSF-ECIG---------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vl-d~~g---------~~~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+ |...         ..+.++.+.+.|+++|.+
T Consensus       154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~  191 (290)
T d1xj5a_         154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVV  191 (290)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEE
T ss_pred             CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEE
Confidence            899655 4433         256789999999999975

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.91  E-value=0.0076  Score=47.20  Aligned_cols=87  Identities=17%  Similarity=0.155  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHHhcCCccE
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      ++.+||-+|+| .|..+..+++ +|+ +|++++.+++.++.+++    .+.+.  +...+.....        ..+.||+
T Consensus        30 ~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~--------~~~~fD~   98 (198)
T d2i6ga1          30 APGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT--------FDGEYDF   98 (198)
T ss_dssp             CSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC--------CCCCEEE
T ss_pred             CCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhheeccccc--------ccccccE
Confidence            44589999987 6777777775 588 99999999998887654    34432  2111110011        1236898


Q ss_pred             EEEcc-----CC---hHHHHHHHHhhccCccc
Q 022819          267 SFECI-----GD---TGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld~~-----g~---~~~~~~~~~~l~~~G~i  290 (291)
                      |+...     ..   ...++.+.++|+++|.+
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~  130 (198)
T d2i6ga1          99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGGYN  130 (198)
T ss_dssp             EEEESCGGGSCTTHHHHHHHHHHHTEEEEEEE
T ss_pred             EEEeeeeecCCHHHHHHHHHHHHHHcCCCcEE
Confidence            88522     11   24678888899999875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.88  E-value=0.26  Score=33.10  Aligned_cols=67  Identities=16%  Similarity=0.313  Sum_probs=48.8

Q ss_pred             EEEEEcCChHHHHH-HHHHHHcCCCeEEEEcCCh-hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGLGTVGLSV-AQGAKARGASRIIGVDTNP-EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~g~~G~~~-i~~a~~~g~~~vi~~~~~~-~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|-++|.|++|+.+ +++++.+|+ .|.+.|..+ +..+.+++.|+......+.  .++         ..+|+|+-+..-
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~--~~i---------~~~d~vV~SsAI   70 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSA--DNW---------YDPDLVIKTPAV   70 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCT--TSC---------CCCSEEEECTTC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecc--ccc---------CCCCEEEEecCc
Confidence            56677988899855 688999999 999999876 4566788899876554432  221         257888877664


Q ss_pred             h
Q 022819          274 T  274 (291)
Q Consensus       274 ~  274 (291)
                      +
T Consensus        71 ~   71 (89)
T d1j6ua1          71 R   71 (89)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.86  E-value=0.16  Score=38.63  Aligned_cols=91  Identities=15%  Similarity=0.149  Sum_probs=55.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHcC-CCeEEEEc-C-ChhhHHHHHHcCCceEeCCCCCCchHHH-------HHHHHhcCCcc
Q 022819          196 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVD-T-NPEKCEKAKAFGVTEFLNPNDNNEPVQQ-------VIKRITDGGAD  265 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~-~-~~~~~~~a~~~g~~~~i~~~~~~~~~~~-------~~~~~~~g~~d  265 (291)
                      +|.|.|-|-+|+.+++.+.... . .++++- . ..+....+.+.+.+......+....+..       .+.++ ..++|
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vD   81 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDL-LEKVD   81 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHH-HTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhh-hccCC
Confidence            6889999999999988877554 4 566652 2 3345566777776554322210011100       01111 12699


Q ss_pred             EEEEccCChHHHHHHHHhhccCc
Q 022819          266 YSFECIGDTGMITTALQSCCDVR  288 (291)
Q Consensus       266 ~vld~~g~~~~~~~~~~~l~~~G  288 (291)
                      +|+||+|.....+.+-..+..|.
T Consensus        82 vViEcTG~f~~~~~~~~hl~~G~  104 (172)
T d2czca2          82 IIVDATPGGIGAKNKPLYEKAGV  104 (172)
T ss_dssp             EEEECCSTTHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCCHHHHHHHHHcCC
Confidence            99999998777777766666553

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.83  E-value=0.083  Score=37.41  Aligned_cols=43  Identities=23%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +.+.....++++++|+|+|.+|+-.++.++.+|. .+..+.+.+
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            3455666788999999999999999999999998 888887654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.81  E-value=0.037  Score=44.39  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      ..++|+|+|+|+.|++++..+...|. +|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            35789999999999999999999999 999998753

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.80  E-value=0.16  Score=39.73  Aligned_cols=93  Identities=15%  Similarity=0.108  Sum_probs=60.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      +..||-+|+| .|..++.+|+..--..+++++.+...+..+    ++.+.+.+.-...+...+   ...+..+.+|.|+-
T Consensus        30 ~PlvLeIGcG-~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l---~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          30 NPIHIEVGTG-KGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL---TDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCEEEEECCT-TSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH---HHHCCTTSCCEEEE
T ss_pred             CceEEEEEec-CcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh---hcccCchhhhcccc
Confidence            3456667887 688888899987444999999999887765    345654332111111222   22333447887765


Q ss_pred             ccCC--------------hHHHHHHHHhhccCccc
Q 022819          270 CIGD--------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       270 ~~g~--------------~~~~~~~~~~l~~~G~i  290 (291)
                      ....              +..++.+.+.|++||.|
T Consensus       106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l  140 (204)
T d2fcaa1         106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSI  140 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEE
T ss_pred             ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEE
Confidence            4433              36889999999999976

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.70  E-value=0.17  Score=37.51  Aligned_cols=78  Identities=17%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCCh
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT  274 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a-~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~  274 (291)
                      +|.++|+|.+|.+.+.-....|. ++++.+++.++.+.+ +++|....-       +..+.++     ..|+||=++.. 
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~~-------~~~~~~~-----~~dvIilavkp-   67 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYAM-------SHQDLID-----QVDLVILGIKP-   67 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBCS-------SHHHHHH-----TCSEEEECSCG-
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeeec-------hhhhhhh-----ccceeeeecch-
Confidence            47788999999988887666777 899999998887665 566754322       1222222     46888877753 


Q ss_pred             HHHHHHHHhhccC
Q 022819          275 GMITTALQSCCDV  287 (291)
Q Consensus       275 ~~~~~~~~~l~~~  287 (291)
                      ..+.+.++.++++
T Consensus        68 ~~~~~vl~~l~~~   80 (152)
T d2ahra2          68 QLFETVLKPLHFK   80 (152)
T ss_dssp             GGHHHHHTTSCCC
T ss_pred             HhHHHHhhhcccc
Confidence            4556666655543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.65  E-value=0.43  Score=34.86  Aligned_cols=80  Identities=15%  Similarity=0.070  Sum_probs=55.7

Q ss_pred             CEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-C-ccEEEEcc
Q 022819          195 STVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-G-ADYSFECI  271 (291)
Q Consensus       195 ~~vlV~G-~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~-~d~vld~~  271 (291)
                      ++|.|+| .|.+|...+..++..|. .|.+.+++++........+++.++.... .......+.+.... . =.+++|+.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~v~~~~~~~~~~~~iiiD~~   87 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP-INLTLETIERLKPYLTENMLLADLT   87 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC-GGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc-hhhheeeeecccccccCCceEEEec
Confidence            5799999 69999999999999999 9999999887666555556666554432 13444445554433 2 24888988


Q ss_pred             CChHH
Q 022819          272 GDTGM  276 (291)
Q Consensus       272 g~~~~  276 (291)
                      +....
T Consensus        88 Svk~~   92 (152)
T d2pv7a2          88 SVKRE   92 (152)
T ss_dssp             SCCHH
T ss_pred             ccCHH
Confidence            76433

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.50  E-value=0.16  Score=36.16  Aligned_cols=37  Identities=32%  Similarity=0.564  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      ++++++++|+|+|.+|.-++..++.+|. +|..+.+++
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc
Confidence            4677999999999999999999999999 888887654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.45  E-value=0.04  Score=44.42  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=30.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +++|+|+|+|+-|++++..+...|. +|.+++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            5789999999999999999999999 999998643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.011  Score=44.61  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE  232 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~  232 (291)
                      +|+|+|+|.+|.+....+...|. .|..+++++++.+
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~   37 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYC   37 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhh
Confidence            58899999999999888888999 9999988776543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.35  E-value=0.51  Score=35.52  Aligned_cols=43  Identities=14%  Similarity=0.259  Sum_probs=37.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG  238 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g  238 (291)
                      .+|-++|.|.+|...+.-+...|. .|++.++++++.+.+.+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~   45 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANE   45 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhc
Confidence            568899999999999988888899 9999999999988776543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.33  E-value=0.076  Score=37.72  Aligned_cols=39  Identities=15%  Similarity=0.174  Sum_probs=33.4

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      ..++..++|+|+|+|.+|+-+++.+..+|. +|..+.+.+
T Consensus        17 ~~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          17 FNIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TTCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             hccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            345667899999999999999999999999 888887653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.061  Score=44.04  Aligned_cols=90  Identities=14%  Similarity=0.052  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhcCCccEEE
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSF  268 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~~~~~~~~~~a~~~g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vl  268 (291)
                      ..++.+||-+|+| .|..+..+++.. +. +++++|.+++.++.+++..... ++..+.  .++     .+.++.+|+|+
T Consensus        82 ~~~~~~iLDiGcG-~G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~--~~l-----~~~~~sfD~v~  152 (268)
T d1p91a_          82 DDKATAVLDIGCG-EGYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS--HRL-----PFSDTSMDAII  152 (268)
T ss_dssp             CTTCCEEEEETCT-TSTTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT--TSC-----SBCTTCEEEEE
T ss_pred             CCCCCEEEEeCCC-CcHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeeh--hhc-----cCCCCCEEEEe
Confidence            4677889999986 466666777765 55 8999999999999887643322 222211  110     11223799998


Q ss_pred             EccCChHHHHHHHHhhccCccc
Q 022819          269 ECIGDTGMITTALQSCCDVRSI  290 (291)
Q Consensus       269 d~~g~~~~~~~~~~~l~~~G~i  290 (291)
                      ..- .+..+++..+.|++||.+
T Consensus       153 ~~~-~~~~~~e~~rvLkpgG~l  173 (268)
T d1p91a_         153 RIY-APCKAEELARVVKPGGWV  173 (268)
T ss_dssp             EES-CCCCHHHHHHHEEEEEEE
T ss_pred             ecC-CHHHHHHHHHHhCCCcEE
Confidence            654 446688999999999976

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.057  Score=41.61  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      ...+++|+|+|+|+.|+.++..+..+|. +|..++..+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            4567899999999999999999999999 999998754

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.13  E-value=0.19  Score=37.63  Aligned_cols=81  Identities=14%  Similarity=0.086  Sum_probs=52.4

Q ss_pred             EEEEEcCChHHHH-HHHHHHHc-CCCeEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccC
Q 022819          196 TVVIFGLGTVGLS-VAQGAKAR-GASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG  272 (291)
Q Consensus       196 ~vlV~G~g~~G~~-~i~~a~~~-g~~~vi~~~~~~~~~~~a-~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g  272 (291)
                      +|.|+|+|.+|.. .+...+.. +. .+++++.++++.+.+ ++++....+..      +.+.+    ...+|+|+-++.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~ll----~~~iD~V~I~tp   71 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTD------YRDVL----QYGVDAVMIHAA   71 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSS------TTGGG----GGCCSEEEECSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhccccccccc------HHHhc----ccccceeccccc
Confidence            5788999999954 56666555 45 677788887776655 45676543321      11111    125888888888


Q ss_pred             ChHHHHHHHHhhccC
Q 022819          273 DTGMITTALQSCCDV  287 (291)
Q Consensus       273 ~~~~~~~~~~~l~~~  287 (291)
                      .....+.+..++..|
T Consensus        72 ~~~H~~~~~~al~~g   86 (167)
T d1xeaa1          72 TDVHSTLAAFFLHLG   86 (167)
T ss_dssp             GGGHHHHHHHHHHTT
T ss_pred             ccccccccccccccc
Confidence            777777777777655

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.94  Score=38.15  Aligned_cols=58  Identities=24%  Similarity=0.307  Sum_probs=44.6

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCceEe
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT--NPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~--~~~~~~~a~~~g~~~~i  243 (291)
                      .+...+++.++|+..++|..|.+++..|+.+|.+-+|.+..  +++|.+.++.+|+..+.
T Consensus        89 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~  148 (355)
T d1jbqa_          89 ERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR  148 (355)
T ss_dssp             HHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             HHcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEE
Confidence            34455677777776678999999999999999955555533  55788999999997654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.10  E-value=0.079  Score=44.65  Aligned_cols=92  Identities=25%  Similarity=0.239  Sum_probs=52.1

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCce---EeCCCCCCchHHHHHHHHhc
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE---FLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~----~~g~~~---~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ....++++||-+|+| .|..++.+|+ +|+++|++++.++ ..+.++    +.+...   ++..+.  .++     .+..
T Consensus        34 ~~~~~~~~VLDlGcG-tG~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~--~~l-----~~~~  103 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCG-TGILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL--EDV-----HLPF  103 (328)
T ss_dssp             HHHHTTCEEEEETCT-TSHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT--TTS-----CCSS
T ss_pred             cccCCcCEEEEeCCC-CCHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh--hhc-----cCcc
Confidence            345688999999987 3555554444 6877999999875 333443    333321   232221  111     1112


Q ss_pred             CCccEEEEccC-----C----hHHHHHHHHhhccCccc
Q 022819          262 GGADYSFECIG-----D----TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vld~~g-----~----~~~~~~~~~~l~~~G~i  290 (291)
                      ..+|+|+...-     .    +..+....++|+++|++
T Consensus       104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~i  141 (328)
T d1g6q1_         104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI  141 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEE
T ss_pred             cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEE
Confidence            37898875221     1    22344445789999976

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.08  E-value=0.059  Score=41.70  Aligned_cols=40  Identities=23%  Similarity=0.379  Sum_probs=35.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      ++|.|+|+|.+|...+.++...|. +|+..+.+++.++.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~   44 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGL   44 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhh
Confidence            579999999999999988889999 9999999998776553

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.04  E-value=0.3  Score=35.52  Aligned_cols=77  Identities=14%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKA-RGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~-~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|.|.|+ |-+|...+..... .+. .+++.-...+.......-+++.++|+.. .+...+.++.....+..+|+-++|-
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~~~~~~~~~~~~~DvvIDFS~-p~~~~~~~~~~~~~~~~~ViGTTG~   78 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDAGDPLSLLTDGNTEVVIDFTH-PDVVMGNLEFLIDNGIHAVVGTTGF   78 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECTTCCTHHHHTTTCSEEEECCC-TTTHHHHHHHHHHTTCEEEECCCCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCchhhhccccCCEEEEccc-HHHHHHHHHHHHhcCCCEEEecccc
Confidence            5789997 9999998887665 466 4444433344444555567889999975 2334444444444488899999996


Q ss_pred             h
Q 022819          274 T  274 (291)
Q Consensus       274 ~  274 (291)
                      .
T Consensus        79 ~   79 (135)
T d1yl7a1          79 T   79 (135)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.03  E-value=0.041  Score=46.41  Aligned_cols=78  Identities=12%  Similarity=0.059  Sum_probs=49.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcC---CceEeCCCCCCchHHHHHHHHhcC-Ccc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFG---VTEFLNPNDNNEPVQQVIKRITDG-GAD  265 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~-~a~~~g---~~~~i~~~~~~~~~~~~~~~~~~g-~~d  265 (291)
                      -++++|||+|+ |.+|..+++.+...|. .|+++++...+.. +++...   .-..+.-+-.+.+   .+.+.... .+|
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~---~l~~~~~~~~~~   81 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN---KLLESIREFQPE   81 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHH---HHHHHHHHHCCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeeccChH---hhhhhhhhchhh
Confidence            36799999987 9999999999999999 8999988665322 222211   1122222211122   23333333 789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +|+.+++.
T Consensus        82 ~v~~~aa~   89 (356)
T d1rkxa_          82 IVFHMAAQ   89 (356)
T ss_dssp             EEEECCSC
T ss_pred             hhhhhhcc
Confidence            99988775

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.90  E-value=0.26  Score=37.40  Aligned_cols=84  Identities=15%  Similarity=0.147  Sum_probs=55.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHc-CCCeEEEE-cCChhhHHH-HHHcCCce-EeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          196 TVVIFGLGTVGLSVAQGAKAR-GASRIIGV-DTNPEKCEK-AKAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~-~~~~~~~~~-a~~~g~~~-~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++.|+|+|.+|...++..+.. +. +++++ ++++++.+. +++++... ...+    .++.+.+..   ..+|+|+-++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~ll~~---~~iD~v~I~t   74 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIH----GSYESLLED---PEIDALYVPL   74 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEE----SSHHHHHHC---TTCCEEEECC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeec----CcHHHhhhc---cccceeeecc
Confidence            578899999999988888776 56 66654 666666544 45565432 1111    233333322   3789999998


Q ss_pred             CChHHHHHHHHhhccC
Q 022819          272 GDTGMITTALQSCCDV  287 (291)
Q Consensus       272 g~~~~~~~~~~~l~~~  287 (291)
                      .....++.+..++..|
T Consensus        75 p~~~h~~~~~~~l~~g   90 (184)
T d1ydwa1          75 PTSLHVEWAIKAAEKG   90 (184)
T ss_dssp             CGGGHHHHHHHHHTTT
T ss_pred             cchhhcchhhhhhhcc
Confidence            8877788888888765

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.4  Score=35.55  Aligned_cols=94  Identities=13%  Similarity=0.197  Sum_probs=60.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCChh--h-HHHHHHcCCceEeCCCCCC-chHH--------------
Q 022819          195 STVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPE--K-CEKAKAFGVTEFLNPNDNN-EPVQ--------------  253 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~--g~~~vi~~~~~~~--~-~~~a~~~g~~~~i~~~~~~-~~~~--------------  253 (291)
                      ++|.|+|+ |.+|..++.+.+..  .+ +|+++..+..  . .+.++++....++..++.. ..+.              
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~   80 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS   80 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccccc
Confidence            36889998 99999999999977  35 6776654332  2 3345667777765443200 0111              


Q ss_pred             --HHHHHHhcC-CccEEEEccCChHHHHHHHHhhccCcc
Q 022819          254 --QVIKRITDG-GADYSFECIGDTGMITTALQSCCDVRS  289 (291)
Q Consensus       254 --~~~~~~~~g-~~d~vld~~g~~~~~~~~~~~l~~~G~  289 (291)
                        +.+.++... .+|+|+..+.+...+.-.+..++.+-+
T Consensus        81 g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~  119 (151)
T d1q0qa2          81 GQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKT  119 (151)
T ss_dssp             SHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCE
T ss_pred             ChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCe
Confidence              122333233 789999999987778888887776543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.79  E-value=0.19  Score=39.11  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      .+++|.|+|.|.+|..++++++.+|+ +|++.+...+
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccc
Confidence            47899999999999999999999999 9999986543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.69  E-value=0.099  Score=39.44  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=33.0

Q ss_pred             EEEEE-cCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          196 TVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       196 ~vlV~-G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      +|.|+ |+|.+|.+.++.+...|. +|+..++++++.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            47788 669999999999999999 899999999887655

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=92.67  E-value=0.42  Score=35.99  Aligned_cols=93  Identities=15%  Similarity=0.099  Sum_probs=52.8

Q ss_pred             CCCCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-EeCCCCCCchHHHHHHHHhcC
Q 022819          190 DISKGSTVVIFGL--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-FLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       190 ~~~~~~~vlV~G~--g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ++.++.+||-.++  |.+|+   . |...|+ .++.++.+++..+.+++    .+... +...+.  +.+... ......
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i---~-a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~--d~~~~~-~~~~~~  109 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGL---E-AASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV--EVFLPE-AKAQGE  109 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHH---H-HHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH--HHHHHH-HHHTTC
T ss_pred             cccCCCeEEEeccccchhhh---h-hhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh--hccccc-ccccCC
Confidence            4678889998855  55554   3 334688 88899999998887753    45543 433321  222222 222223


Q ss_pred             CccEEEE-c---cCChHHHHHHHH--hhccCccc
Q 022819          263 GADYSFE-C---IGDTGMITTALQ--SCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld-~---~g~~~~~~~~~~--~l~~~G~i  290 (291)
                      .||+||- .   .+-...+..+++  +++++|.+
T Consensus       110 ~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~i  143 (171)
T d1ws6a1         110 RFTVAFMAPPYAMDLAALFGELLASGLVEAGGLY  143 (171)
T ss_dssp             CEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEE
T ss_pred             ccceeEEccccccCHHHHHHHHHHcCCcCCCeEE
Confidence            7998873 2   122334444433  46777653

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.63  E-value=0.21  Score=36.03  Aligned_cols=82  Identities=12%  Similarity=0.103  Sum_probs=52.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcC-CccEEEEccCC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g-~~d~vld~~g~  273 (291)
                      +|.|+|+ |-+|.+..+++...+.+.+..++.+...  .+  -.++.+||+..  ++.....-++... +..+|+-++|-
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~--~~--~~~DVvIDFS~--p~~~~~~l~~~~~~~~p~ViGTTG~   75 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE--EL--DSPDVVIDFSS--PEALPKTVDLCKKYRAGLVLGTTAL   75 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE--EC--SCCSEEEECSC--GGGHHHHHHHHHHHTCEEEECCCSC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH--Hh--ccCCEEEEecC--HHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            5789997 9999999999999998444455543321  11  24677888875  4443333333333 78899999996


Q ss_pred             hHHHHHHHHh
Q 022819          274 TGMITTALQS  283 (291)
Q Consensus       274 ~~~~~~~~~~  283 (291)
                      .+...+.++.
T Consensus        76 ~~~~~~~i~~   85 (128)
T d1vm6a3          76 KEEHLQMLRE   85 (128)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            4443333333

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=92.59  E-value=0.11  Score=43.78  Aligned_cols=91  Identities=15%  Similarity=0.143  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHHh-cC-C
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRIT-DG-G  263 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~--~i~~~~~~~~~~~~~~~~~-~g-~  263 (291)
                      .++++||=.++|. |..++.+|+  |+.+|+++|.+++.++.+++    .|.+.  ++.     .+..+.++.+. .+ .
T Consensus       144 ~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~-----~d~~~~~~~~~~~~~~  215 (318)
T d1wxxa2         144 FRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLE-----ANAFDLLRRLEKEGER  215 (318)
T ss_dssp             CCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE-----SCHHHHHHHHHHTTCC
T ss_pred             hCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceee-----ccHHHHhhhhHhhhcC
Confidence            4789999886642 333345554  33499999999999888864    35432  222     23333344332 23 8


Q ss_pred             ccEEEEccC-----C----------hHHHHHHHHhhccCccc
Q 022819          264 ADYSFECIG-----D----------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       264 ~d~vld~~g-----~----------~~~~~~~~~~l~~~G~i  290 (291)
                      ||+|+--..     .          ...+..++++|++||.|
T Consensus       216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~L  257 (318)
T d1wxxa2         216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGIL  257 (318)
T ss_dssp             EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence            997764211     1          23566788899999975

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=92.51  E-value=0.18  Score=42.27  Aligned_cols=93  Identities=18%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC------C----ceEeCCCCCCchHHHHHHHHhc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG------V----TEFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g------~----~~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ...++|||+|.| .|..+-.+++.....+|.+++.+++-.+.++++-      +    ..-+..    .+..+.+++ +.
T Consensus        76 ~~pk~VLiiG~G-~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~----~Da~~~l~~-~~  149 (312)
T d1uira_          76 PEPKRVLIVGGG-EGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI----DDARAYLER-TE  149 (312)
T ss_dssp             SCCCEEEEEECT-TSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE----SCHHHHHHH-CC
T ss_pred             CCcceEEEeCCC-chHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE----chHHHHhhh-cC
Confidence            456899999875 2455556666665569999999999888887641      1    001111    345556655 34


Q ss_pred             CCccEEE-Ec---cC---------ChHHHHHHHHhhccCccc
Q 022819          262 GGADYSF-EC---IG---------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vl-d~---~g---------~~~~~~~~~~~l~~~G~i  290 (291)
                      ..+|+|+ |.   .+         ..+.++.+.+.|+++|.+
T Consensus       150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvl  191 (312)
T d1uira_         150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVM  191 (312)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEE
T ss_pred             CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceE
Confidence            4899765 43   12         135788899999999975

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=92.33  E-value=1.6  Score=35.31  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=43.6

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc--CChhhHHHHHHcCCceEe
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD--TNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~--~~~~~~~~a~~~g~~~~i  243 (291)
                      .+.....+..+|+..++|..|.+++..++.+|.+-+|.+.  .++.|.+.++.+|+..++
T Consensus        52 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~  111 (292)
T d2bhsa1          52 EKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELIL  111 (292)
T ss_dssp             HHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEE
T ss_pred             HHhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcce
Confidence            3445566677766667899999999999999995555553  256788899999987644

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.30  E-value=0.076  Score=43.51  Aligned_cols=38  Identities=29%  Similarity=0.381  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .....++|+|+|+|+.|+.++..+...|. +|.+++.++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            34566799999999999999999999999 999998654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.16  Score=41.79  Aligned_cols=76  Identities=21%  Similarity=0.230  Sum_probs=44.1

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEE---EEcCChhhHH----HHHHc---CCce-E--eCCCCCCchHHHHHHHHhc
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRII---GVDTNPEKCE----KAKAF---GVTE-F--LNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi---~~~~~~~~~~----~a~~~---g~~~-~--i~~~~~~~~~~~~~~~~~~  261 (291)
                      .|||.|+ +++|++++..+...|+ +++   .+.++.++.+    .++++   +... .  .|..+ .++....+.+...
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga-~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~   81 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERVTE   81 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTCTT
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCC-CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc-hHhhhhhhhhccc
Confidence            3466687 8999999999888898 433   3333333322    33333   2222 2  24432 2344444444445


Q ss_pred             CCccEEEEccCC
Q 022819          262 GGADYSFECIGD  273 (291)
Q Consensus       262 g~~d~vld~~g~  273 (291)
                      +.+|+++++.|.
T Consensus        82 g~idilvnnag~   93 (285)
T d1jtva_          82 GRVDVLVCNAGL   93 (285)
T ss_dssp             SCCSEEEECCCC
T ss_pred             cchhhhhhcccc
Confidence            689999998775

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.24  E-value=0.34  Score=40.47  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=27.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      +.|||+|+ |-+|..++..+...|. +|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC
Confidence            57899987 9999999999998998 8988864

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.21  E-value=0.45  Score=36.00  Aligned_cols=91  Identities=19%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCceEeCCCCCCchHHH-------HHHHHhcCCccE
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDT--NPEKCEKAKAFGVTEFLNPNDNNEPVQQ-------VIKRITDGGADY  266 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~--~~~~~~~a~~~g~~~~i~~~~~~~~~~~-------~~~~~~~g~~d~  266 (291)
                      +|.|.|-|-+|+.+++++...+--.++++-.  ......++.+++.+......+....+..       .+.++. .++|+
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-~~vDv   81 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEADI   81 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTCSE
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhh-cCCCE
Confidence            6889999999999999887665225666532  2344556666666554332210000000       011111 26999


Q ss_pred             EEEccCChHHHHHHHHhhccC
Q 022819          267 SFECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       267 vld~~g~~~~~~~~~~~l~~~  287 (291)
                      |+||+|.....+.+-..+..|
T Consensus        82 ViEcTG~f~~~~~~~~hl~~G  102 (171)
T d1cf2o1          82 VIDCTPEGIGAKNLKMYKEKG  102 (171)
T ss_dssp             EEECCSTTHHHHHHHHHHHTT
T ss_pred             EEEccCCCCCHHHHHHHHHcC
Confidence            999999866666666666554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.13  E-value=0.18  Score=35.88  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=33.0

Q ss_pred             hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          188 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      ...-.++++|+|+|+|.+|+-+++.+..+|. +|..+.+.+
T Consensus        24 ~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          24 KTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            3334567899999999999999999999999 888886643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.11  E-value=0.12  Score=36.47  Aligned_cols=35  Identities=14%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+++++|+|+|.+|+-+++.+..+|. +|..+.+.+
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCCeEEEECCCccceeeeeeeccccc-EEEEEEecc
Confidence            45789999999999999999999999 888886654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.99  E-value=0.78  Score=34.80  Aligned_cols=86  Identities=17%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHcC-CCeEEEEc-CC-hhhHHHHHHcCCceEeCCCC------C----CchHHHHHHHHhcC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVD-TN-PEKCEKAKAFGVTEFLNPND------N----NEPVQQVIKRITDG  262 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~-~~-~~~~~~a~~~g~~~~i~~~~------~----~~~~~~~~~~~~~g  262 (291)
                      +|.|.|-|-+|+.+++.+.... . .++++- .. .....++.+.+.......+.      .    ..++.+.+     .
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-----~   76 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-----K   76 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-----H
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh-----h
Confidence            5789999999999999988764 5 677763 32 23344444444332221110      0    01111111     1


Q ss_pred             CccEEEEccCChHHHHHHHHhhccC
Q 022819          263 GADYSFECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       263 ~~d~vld~~g~~~~~~~~~~~l~~~  287 (291)
                      ++|+|+||+|.....+.+-..++.+
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G  101 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQ  101 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTT
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcC
Confidence            5899999999866666666666543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.94  E-value=0.14  Score=41.23  Aligned_cols=32  Identities=22%  Similarity=0.469  Sum_probs=28.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +|||+|+ |.+|..++..++..|. .|+++++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechh
Confidence            4899987 9999999999999998 999998653

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=91.84  E-value=0.65  Score=38.32  Aligned_cols=99  Identities=24%  Similarity=0.270  Sum_probs=65.6

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCceEeCCCCC----------------
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT--NPEKCEKAKAFGVTEFLNPNDN----------------  248 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~--~~~~~~~a~~~g~~~~i~~~~~----------------  248 (291)
                      +...+.++++|+..++|.-|.++...++.+|++.+|++..  +..|.+.++.+|+..+......                
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~  133 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD  133 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence            3445677777766678999999999999999966666644  4467888888998765422110                


Q ss_pred             -----------Cch--------HHHHHHHHhcCCccEEEEccCChHHHHHHHHhhc
Q 022819          249 -----------NEP--------VQQVIKRITDGGADYSFECIGDTGMITTALQSCC  285 (291)
Q Consensus       249 -----------~~~--------~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~  285 (291)
                                 ...        ....+.+..++.+|.++-++|+-..+......++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk  189 (310)
T d1y7la1         134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK  189 (310)
T ss_dssp             TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred             cCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence                       000        1223334444478999999988666666666554

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.82  E-value=0.38  Score=38.84  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=29.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +..+|||+|+ |.+|..++..+...|. .|+++.++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC
Confidence            3456999987 9999999999999998 888887754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=91.81  E-value=0.17  Score=41.54  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=62.3

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHHHhcC
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~----g~~~-~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      .++.++.+||-+|+| .|..+..+++..+. .+|+++|.+++.++.+++.    +... ++..+.  .++     . ..+
T Consensus        23 ~~~~~~~~ILDiGcG-~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~--~~~-----~-~~~   93 (281)
T d2gh1a1          23 WKITKPVHIVDYGCG-YGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA--TEI-----E-LND   93 (281)
T ss_dssp             SCCCSCCEEEEETCT-TTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT--TTC-----C-CSS
T ss_pred             hccCCcCEEEEecCc-CCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccc--ccc-----c-ccC
Confidence            456788899999987 57888888886532 3899999999988887653    3332 222111  110     0 123


Q ss_pred             CccEEEEcc-----CC-hHHHHHHHHhhccCccc
Q 022819          263 GADYSFECI-----GD-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~-----g~-~~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+..-     .. ...++.+.+.|++||.|
T Consensus        94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l  127 (281)
T d2gh1a1          94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKI  127 (281)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEE
T ss_pred             CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEE
Confidence            789888642     22 35689999999999975

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.81  E-value=0.17  Score=41.99  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      +++||+|+ |-+|..++..+...|. .|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence            67899987 9999999999999999 99999874

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.76  E-value=0.15  Score=39.33  Aligned_cols=83  Identities=16%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceE----eCCCCC---CchHHHHHHHHhcCCccEE
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF----LNPNDN---NEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~----i~~~~~---~~~~~~~~~~~~~g~~d~v  267 (291)
                      .+|.|+|+|..|.+.+.++...|- .|..++++++..+.+.+-+....    +.....   ..++.+.+     ...|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~-----~~ad~i   81 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY-----NGAEII   81 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH-----TTCSCE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhcc-----CCCCEE
Confidence            369999999999999988888887 89999999988887765332110    000000   02222222     247999


Q ss_pred             EEccCChHHHHHHHHhh
Q 022819          268 FECIGDTGMITTALQSC  284 (291)
Q Consensus       268 ld~~g~~~~~~~~~~~l  284 (291)
                      +-++.. ..+...++.+
T Consensus        82 iiavPs-~~~~~~~~~~   97 (189)
T d1n1ea2          82 LFVIPT-QFLRGFFEKS   97 (189)
T ss_dssp             EECSCH-HHHHHHHHHH
T ss_pred             EEcCcH-HHHHHHHHHH
Confidence            988876 4555555544

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.71  E-value=0.12  Score=41.09  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+.+++|+|+|+|+.|+.++..++.+|. .|..++.++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            3577899999999999999999999999 899997655

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.68  E-value=0.083  Score=41.92  Aligned_cols=36  Identities=28%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhh
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK  230 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~  230 (291)
                      ++++||.|+ +++|+++++.+...|+ +|+.+++++++
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence            367889987 8999999999999999 99999987764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.58  E-value=0.13  Score=40.54  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ++.++|+|+|+|..|++++..+..+|. +|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            455689999999999999999999999 89999764

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=91.53  E-value=0.72  Score=34.75  Aligned_cols=83  Identities=13%  Similarity=0.070  Sum_probs=53.1

Q ss_pred             EEEEEcCChHHHH-HHHHHHHcCCC-eEE-EEcCChhhHHH-HHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          196 TVVIFGLGTVGLS-VAQGAKARGAS-RII-GVDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       196 ~vlV~G~g~~G~~-~i~~a~~~g~~-~vi-~~~~~~~~~~~-a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      ++.|+|+|.+|.. .+...+...-. .++ +.++++++.+. +++++...++      .++.+.+.   ...+|+|+-++
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~------~~~~ell~---~~~id~v~I~t   75 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF------DSYEELLE---SGLVDAVDLTL   75 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE------SCHHHHHH---SSCCSEEEECC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee------eeeecccc---ccccceeeccc
Confidence            5788999999964 56666655421 455 45667766554 4567765544      22333332   23789999888


Q ss_pred             CChHHHHHHHHhhccC
Q 022819          272 GDTGMITTALQSCCDV  287 (291)
Q Consensus       272 g~~~~~~~~~~~l~~~  287 (291)
                      ......+.+..++..|
T Consensus        76 p~~~h~~~~~~al~~g   91 (181)
T d1zh8a1          76 PVELNLPFIEKALRKG   91 (181)
T ss_dssp             CGGGHHHHHHHHHHTT
T ss_pred             cccccccccccccccc
Confidence            8766777777777654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.50  E-value=0.29  Score=41.22  Aligned_cols=34  Identities=21%  Similarity=0.347  Sum_probs=28.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+.|||+|+ |-+|..++..+...|. .|+++++..
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~   35 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA   35 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            367889987 9999999999999998 999998854

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.44  E-value=0.22  Score=37.77  Aligned_cols=41  Identities=29%  Similarity=0.357  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      -++++|||+|+|+.+.+++..+...  .+|..+.|+.++.+.+
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~--~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKD--NNIIIANRTVEKAEAL   56 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSS--SEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHccc--cceeeehhhhhHHHHH
Confidence            4788999999999999887766443  3888888988876654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=91.41  E-value=0.3  Score=40.87  Aligned_cols=93  Identities=15%  Similarity=0.071  Sum_probs=58.0

Q ss_pred             cCCCCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCC--ce--EeCCCCCCchHHHHHHH
Q 022819          189 ADISKGSTVVIFGL--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGV--TE--FLNPNDNNEPVQQVIKR  258 (291)
Q Consensus       189 ~~~~~~~~vlV~G~--g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~--~~--~i~~~~~~~~~~~~~~~  258 (291)
                      ..+.++++||-..+  |+.++   .+ ...|+..|+.++.++..++++++    -|.  ..  ++.     .+..+.++.
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl---~a-a~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~-----~d~~~~l~~  210 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSV---AA-AMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV-----MDVFDYFKY  210 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHH---HH-HHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE-----SCHHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHH---HH-HhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE-----ccHHHHHHH
Confidence            45678999998844  55553   33 34677789999999998888864    122  11  222     233344444


Q ss_pred             Hh-cC-CccEEE-EccC--------------ChHHHHHHHHhhccCccc
Q 022819          259 IT-DG-GADYSF-ECIG--------------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       259 ~~-~g-~~d~vl-d~~g--------------~~~~~~~~~~~l~~~G~i  290 (291)
                      +. .+ .||+|+ |.-.              -...+..++++|++||.|
T Consensus       211 ~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l  259 (317)
T d2b78a2         211 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLI  259 (317)
T ss_dssp             HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence            32 23 799766 3211              023677788999999975

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.16  Score=35.73  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +++++|+|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            5789999999999999999999999 888887754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.28  E-value=0.18  Score=35.92  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      ..++++|+|+|.+|+-+++++..+|. .|..+.+.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            35789999999999999999999999 888887644

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.3  Score=40.72  Aligned_cols=73  Identities=14%  Similarity=0.141  Sum_probs=44.0

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC----ChhhHHHHHHc---CCceE-eCCCCCCchHHHHHHHHhcCCccE
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDT----NPEKCEKAKAF---GVTEF-LNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~----~~~~~~~a~~~---g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      +|||+|+ |.+|..++..+...|. .|+++++    ..+.....+.+   .+..+ .|..+ ...+.+.++.   .++|+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~---~~~d~   76 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-EALMTEILHD---HAIDT   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC-HHHHHHHHHH---TTCSE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC-HHHHHHHHhc---cCCCE
Confidence            4899987 9999999999999998 8998864    22222322222   23222 22221 1222222222   37999


Q ss_pred             EEEccCC
Q 022819          267 SFECIGD  273 (291)
Q Consensus       267 vld~~g~  273 (291)
                      ||.+.+.
T Consensus        77 ViHlAa~   83 (338)
T d1udca_          77 VIHFAGL   83 (338)
T ss_dssp             EEECCSC
T ss_pred             EEECCCc
Confidence            9998753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.26  E-value=0.19  Score=36.37  Aligned_cols=38  Identities=26%  Similarity=0.384  Sum_probs=32.9

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .++++++++|+|+|.+|+-++..++.+|. .|..+.+.+
T Consensus        31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          31 QLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            34677899999999999999999999999 888887654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=91.20  E-value=0.18  Score=41.39  Aligned_cols=92  Identities=14%  Similarity=0.115  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC-----C----c-eEeCCCCCCchHHHHHHHHhc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG-----V----T-EFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g-----~----~-~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      .+.++|||+|.| -|..+-.+++..+.++|.+++-+++-.+.++++-     +    . .++.     .+..+.+++ +.
T Consensus        74 ~~p~~vLiiGgG-~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~-----~D~~~~l~~-~~  146 (274)
T d1iy9a_          74 PNPEHVLVVGGG-DGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV-----DDGFMHIAK-SE  146 (274)
T ss_dssp             SSCCEEEEESCT-TCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE-----SCSHHHHHT-CC
T ss_pred             CCcceEEecCCC-CcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEe-----chHHHHHhh-cC
Confidence            466899999765 2445556667777779999999999888887752     1    0 1121     233444554 23


Q ss_pred             CCccEEE-EccC---------ChHHHHHHHHhhccCccc
Q 022819          262 GGADYSF-ECIG---------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vl-d~~g---------~~~~~~~~~~~l~~~G~i  290 (291)
                      ..+|+|+ |...         ..+.++.+.+.|+++|.+
T Consensus       147 ~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~  185 (274)
T d1iy9a_         147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIF  185 (274)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceE
Confidence            3899765 4322         356788999999999975

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=91.11  E-value=0.26  Score=40.93  Aligned_cols=74  Identities=12%  Similarity=0.176  Sum_probs=45.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCC-CCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND-NNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~-~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|||+|+ |.+|..+++.+...|...|+++++...+...+.+..--.++.-+- +..++.+.+.+    ++|+|+.+.+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~----~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK----KCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH----HCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHh----CCCcccccccc
Confidence            5899987 999999998888888448999987665544332221112332221 11233332222    58999998774

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.25  Score=40.74  Aligned_cols=94  Identities=12%  Similarity=0.093  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC---------ceEeCCCCCCchHHHHHHHHhc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV---------TEFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~---------~~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ....++|||+|+| -|..+-.+++..+..++.+++-+++-.+.++++-.         ..-+..    .|..+.+++ +.
T Consensus        76 ~~~pk~vLiiGgG-~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~----~Da~~~l~~-~~  149 (285)
T d2o07a1          76 HPNPRKVLIIGGG-DGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV----GDGFEFMKQ-NQ  149 (285)
T ss_dssp             SSSCCEEEEEECT-TSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE----SCHHHHHHT-CS
T ss_pred             CcCcCeEEEeCCC-chHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE----ccHHHHHhc-CC
Confidence            3456889999764 24445566676666799999999999988877521         111111    344555554 33


Q ss_pred             CCccEEE-EccCC---------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSF-ECIGD---------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vl-d~~g~---------~~~~~~~~~~l~~~G~i  290 (291)
                      ..+|+|+ |....         .+.++.+.+.|+++|.+
T Consensus       150 ~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~  188 (285)
T d2o07a1         150 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVL  188 (285)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeE
Confidence            4899655 43321         34577888899999865

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.98  E-value=0.12  Score=41.79  Aligned_cols=42  Identities=17%  Similarity=0.189  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHH-HHH--HcCCCeEEEEcCChhhHHHHH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQ-GAK--ARGASRIIGVDTNPEKCEKAK  235 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~-~a~--~~g~~~vi~~~~~~~~~~~a~  235 (291)
                      +++++||.|+ +++|+++++ +|+  ..|+ +|+.+++++++++.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK   50 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence            4667788887 899998876 455  3688 9999999999877653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.90  E-value=0.19  Score=35.51  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+++++|+|+|.+|+-.++.+..+|. .|..+.+.+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            45889999999999999999999999 777776543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.79  E-value=0.23  Score=42.31  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      |.+|||+|+ |-+|..++..+...|. .|+++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iDn   33 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVDN   33 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEec
Confidence            578999987 9999999999999998 9999973

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=90.75  E-value=0.27  Score=39.65  Aligned_cols=95  Identities=14%  Similarity=-0.029  Sum_probs=61.9

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC--ce--EeCCCCCCchHHHHHHHHhcC
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--TE--FLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~--~~--~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      +.....++.+||-+|+| .|..+..++..... .|.+++.+++-++.+++.-.  ..  ++..+.  .++     .+..+
T Consensus        87 ~~l~~~~~~~vLD~GcG-~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~--~~~-----~~~~~  157 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAG-IGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASM--ETA-----TLPPN  157 (254)
T ss_dssp             HTSTTCCCSEEEEETCT-TTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCG--GGC-----CCCSS
T ss_pred             hhCCCCCCCeEEEeccc-CChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccc--ccc-----ccCCC
Confidence            34445677899999987 58888888876655 89999999999999976421  11  222111  111     01123


Q ss_pred             CccEEEEccCC-----h---HHHHHHHHhhccCccc
Q 022819          263 GADYSFECIGD-----T---GMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~~g~-----~---~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+-.---     +   ..++.+.+.|+++|.|
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~i  193 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYI  193 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCCcEE
Confidence            78988763221     2   4578888899999875

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.74  E-value=0.15  Score=39.17  Aligned_cols=35  Identities=34%  Similarity=0.649  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+++|.|+|.|.+|...+++++.+|+ +|++.++..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            57899999999999999999999999 999998765

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.09  Score=41.75  Aligned_cols=75  Identities=17%  Similarity=0.293  Sum_probs=45.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhcCCccEEEE
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFE  269 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a~~~g~~~~-i~~~~~~~~~~~~~~~~~~g~~d~vld  269 (291)
                      ++++|||+|+ |.+|..+++.+...|. .+|+++.+++.+...-+.-..... .|..    +. +.+.+.. .++|+++.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~----~~-~~~~~~~-~~~d~vi~   86 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFE----KL-DDYASAF-QGHDVGFC   86 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGG----GG-GGGGGGG-SSCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccc----cc-ccccccc-cccccccc
Confidence            4478999987 9999999998888885 479999886543222111112221 2221    11 1122211 26899999


Q ss_pred             ccCC
Q 022819          270 CIGD  273 (291)
Q Consensus       270 ~~g~  273 (291)
                      ++|.
T Consensus        87 ~~~~   90 (232)
T d2bkaa1          87 CLGT   90 (232)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9886

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.64  E-value=0.46  Score=39.58  Aligned_cols=97  Identities=11%  Similarity=0.038  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCc-e-EeCCCC---CCchHHHHHHHHhcCCccE
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-E-FLNPND---NNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~-~-~i~~~~---~~~~~~~~~~~~~~g~~d~  266 (291)
                      ...++|||+|+|. |..+-.+++....++|.+++.+++-.+.++++-.. . ..+...   .-.+..+.+++ +...+|+
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCCE
Confidence            4567899997652 33444666766666999999999999999885211 0 000000   01345566665 3448997


Q ss_pred             EEE-ccC---------ChHHHHHHHHhhccCccc
Q 022819          267 SFE-CIG---------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       267 vld-~~g---------~~~~~~~~~~~l~~~G~i  290 (291)
                      |+- ...         ..+.++.+.+.|+++|.+
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~  216 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGIL  216 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEE
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEE
Confidence            763 211         145577888899999865

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=90.57  E-value=0.11  Score=41.10  Aligned_cols=93  Identities=11%  Similarity=0.028  Sum_probs=56.3

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhcCCc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~--~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      ...+.-++++||-+|+| .|..+..+++ .|. +|++++.+++..+.+++.....  ++..+.  .++      ..++.+
T Consensus        14 ~~~~~~~~~~VLDiGcG-~G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~--~~~------~~~~~f   82 (225)
T d2p7ia1          14 AFTPFFRPGNLLELGSF-KGDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHSRF--EDA------QLPRRY   82 (225)
T ss_dssp             HHGGGCCSSCEEEESCT-TSHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCG--GGC------CCSSCE
T ss_pred             HhhhhCCCCcEEEEeCC-CcHHHHHHHH-cCC-eEEEEeCcHHHhhhhhcccccccccccccc--ccc------cccccc
Confidence            33444567789999886 3555555554 577 8999999999999998643221  222211  111      112378


Q ss_pred             cEEEEc-----cCC-hHHHHHHH-HhhccCccc
Q 022819          265 DYSFEC-----IGD-TGMITTAL-QSCCDVRSI  290 (291)
Q Consensus       265 d~vld~-----~g~-~~~~~~~~-~~l~~~G~i  290 (291)
                      |+|+-.     +.. ...+.... ++|++||.+
T Consensus        83 D~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l  115 (225)
T d2p7ia1          83 DNIVLTHVLEHIDDPVALLKRINDDWLAEGGRL  115 (225)
T ss_dssp             EEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEE
T ss_pred             ccccccceeEecCCHHHHHHHHHHHhcCCCceE
Confidence            988742     112 23355665 578999875

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.49  E-value=0.14  Score=40.88  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=28.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .|+|+|+|+.|++++..++..|...|.++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            589999999999999999999975777877654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.21  Score=39.11  Aligned_cols=93  Identities=13%  Similarity=0.020  Sum_probs=59.3

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC----Cce--EeCCCCCCchHHHHHHHHhcC
Q 022819          189 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG----VTE--FLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       189 ~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g----~~~--~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ....++.+||-+|+| .|..+..+++..+. +|++++.+++-++.+++.-    ...  ++..+.  .++     ....+
T Consensus        56 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~--~~~-----~~~~~  126 (222)
T d2ex4a1          56 PNKTGTSCALDCGAG-IGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL--QDF-----TPEPD  126 (222)
T ss_dssp             --CCCCSEEEEETCT-TTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG--GGC-----CCCSS
T ss_pred             cCCCCCCEEEEeccC-CCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccc--ccc-----ccccc
Confidence            345677889999987 57677777665555 8999999999999887642    111  222211  111     01123


Q ss_pred             CccEEEEc-----cCCh---HHHHHHHHhhccCccc
Q 022819          263 GADYSFEC-----IGDT---GMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vld~-----~g~~---~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+..     +..+   ..++.+.+.|+++|.+
T Consensus       127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~  162 (222)
T d2ex4a1         127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGII  162 (222)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cccccccccccccchhhhhhhHHHHHHHhcCCcceE
Confidence            78988863     2222   4678888999999875

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.41  E-value=0.2  Score=35.05  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      -+++++|+|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            34789999999999999999999999 888887654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.17  Score=40.99  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ++..+|+|+|+|.-|+.++..+...|. +|.+++.+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            456779999999999999999999999 89998754

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=90.26  E-value=0.46  Score=37.33  Aligned_cols=84  Identities=20%  Similarity=0.255  Sum_probs=52.6

Q ss_pred             CEEEEEcCChHHHH-HHHHHHHc-CCCeEE-EEcCChhhHHHH-HHcCCce--EeCCCCCCchHHHHHHHHhcC-CccEE
Q 022819          195 STVVIFGLGTVGLS-VAQGAKAR-GASRII-GVDTNPEKCEKA-KAFGVTE--FLNPNDNNEPVQQVIKRITDG-GADYS  267 (291)
Q Consensus       195 ~~vlV~G~g~~G~~-~i~~a~~~-g~~~vi-~~~~~~~~~~~a-~~~g~~~--~i~~~~~~~~~~~~~~~~~~g-~~d~v  267 (291)
                      =+|.|+|+|.+|.. .+...+.. +. +++ ++++++++.+.+ +++|...  +..+++        ++++... .+|+|
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d--------~~ell~~~~iD~V  104 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN--------FDKIAKDPKIDAV  104 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS--------GGGGGGCTTCCEE
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc--------hhhhcccccceee
Confidence            36888999999863 44444433 66 555 557777775544 5666532  333322        2233333 78999


Q ss_pred             EEccCChHHHHHHHHhhccC
Q 022819          268 FECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       268 ld~~g~~~~~~~~~~~l~~~  287 (291)
                      +-++........+.++|..|
T Consensus       105 ~I~tp~~~H~~~~~~al~~g  124 (221)
T d1h6da1         105 YIILPNSLHAEFAIRAFKAG  124 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHTT
T ss_pred             eeccchhhhhhHHHHhhhcc
Confidence            88888877778888877765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.20  E-value=0.13  Score=40.06  Aligned_cols=33  Identities=21%  Similarity=0.464  Sum_probs=28.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .|+|+|+|+.|+.++..+..+|...|.+++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            488999999999999999999974698997654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.20  E-value=1.8  Score=34.67  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD  225 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~  225 (291)
                      -++.+|+|.|-|.+|..+++.+..+|+ +|+++.
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            378899999999999999999999999 888774

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=90.17  E-value=0.64  Score=35.72  Aligned_cols=36  Identities=28%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      .++++.|+|.|.+|...+++++..|+ +++..+....
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   81 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRA   81 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-cccccccccc
Confidence            37899999999999999999999999 9999987543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.12  E-value=0.12  Score=41.93  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      .|+|+|+|+.|++++..++..|. .|+++++.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            48999999999999999999999 8999987653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.07  E-value=0.79  Score=34.59  Aligned_cols=84  Identities=14%  Similarity=0.119  Sum_probs=48.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh--hHHHHHHcCCceEeCCCCC------CchHHHHHHHHhcCCccEE
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE--KCEKAKAFGVTEFLNPNDN------NEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~--~~~~a~~~g~~~~i~~~~~------~~~~~~~~~~~~~g~~d~v  267 (291)
                      +|.|+|+|..|.+.+..+...|. .|..+.+..+  ..+.+++-.-...+.....      ..+..+.+     ..+|+|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~ad~I   75 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL-----ENAEVV   75 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH-----TTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH-----hccchh
Confidence            47899999999999988888887 8888876433  3334333211100000000      02222222     258999


Q ss_pred             EEccCChHHHHHHHHhhcc
Q 022819          268 FECIGDTGMITTALQSCCD  286 (291)
Q Consensus       268 ld~~g~~~~~~~~~~~l~~  286 (291)
                      +.++.. ..+...++.+.+
T Consensus        76 i~avps-~~~~~~~~~l~~   93 (180)
T d1txga2          76 LLGVST-DGVLPVMSRILP   93 (180)
T ss_dssp             EECSCG-GGHHHHHHHHTT
T ss_pred             hcccch-hhhHHHHHhhcc
Confidence            999987 345555554443

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.01  E-value=0.19  Score=35.76  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      .+++++|+|+|.+|+-.+++++.+|. .|..+.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            45689999999999999999999999 66666554

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=90.00  E-value=0.36  Score=40.25  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=32.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 022819          193 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC  231 (291)
Q Consensus       193 ~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~  231 (291)
                      +.++|+|+|+ |.+|..++..+...|. +|+++.++.++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchh
Confidence            5689999987 9999999999999998 888887765543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.92  E-value=0.16  Score=39.54  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+++|.|+|.|.+|..++++++.+|+ +|++.++..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCcc
Confidence            46899999999999999999999999 999998754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.91  E-value=0.16  Score=40.56  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=29.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      +.|||.|+ +++|+++++.+...|+ +|+.++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence            45788887 8999999999999999 8999987654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.85  E-value=0.17  Score=42.16  Aligned_cols=35  Identities=20%  Similarity=0.404  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +.++|+|+|+|..|+.++..+...|. .|.+++.++
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            35789999999999999999988898 999998765

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.74  E-value=0.74  Score=33.59  Aligned_cols=38  Identities=18%  Similarity=0.314  Sum_probs=30.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA  234 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a  234 (291)
                      +|-|+|.|.+|...+.-++..|. .+++.++..++...+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~   39 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIE   39 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHH
Confidence            47788999999999999999998 888887666554443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.29  Score=34.83  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=30.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .++++|+|+|.+|+-++..++.+|. +|..+.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            4789999999999999999999999 888887754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.63  E-value=0.76  Score=34.98  Aligned_cols=99  Identities=18%  Similarity=0.271  Sum_probs=59.2

Q ss_pred             hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhcCCc
Q 022819          187 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       187 ~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~--~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      +...++++.+++-...|.=|+.. .+++. +. +||++|+.++.+..+++.-...  .+....  .++.+.+..+..+.+
T Consensus        12 ~~l~~~~g~~~vD~T~G~GGhs~-~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f--~~~~~~l~~~~~~~v   86 (182)
T d1wg8a2          12 DLLAVRPGGVYVDATLGGAGHAR-GILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNF--RHLKRHLAALGVERV   86 (182)
T ss_dssp             HHHTCCTTCEEEETTCTTSHHHH-HHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCG--GGHHHHHHHTTCSCE
T ss_pred             HhcCCCCCCEEEEeCCCCcHHHH-HHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHH--HHHHHHHHHcCCCcc
Confidence            44567888876443113334433 33343 55 9999999999988888753222  333322  555555555544478


Q ss_pred             cEEEEccCChH---------------HHHHHHHhhccCccc
Q 022819          265 DYSFECIGDTG---------------MITTALQSCCDVRSI  290 (291)
Q Consensus       265 d~vld~~g~~~---------------~~~~~~~~l~~~G~i  290 (291)
                      |.|+==.|.+.               .+..+++.++++|++
T Consensus        87 dgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~  127 (182)
T d1wg8a2          87 DGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRL  127 (182)
T ss_dssp             EEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             CEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeE
Confidence            85543345422               367778888888865

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.63  E-value=0.67  Score=35.62  Aligned_cols=101  Identities=17%  Similarity=0.142  Sum_probs=60.7

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHHHh
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~----g~~~-~i~~~~~~~~~~~~~~~~~  260 (291)
                      .+...++++++++-.++|.=|.+...+.+.-+. +++++|.+++.++.+++.    +... .+....  .++...+..+.
T Consensus        16 i~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~-~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f--~~~~~~~~~~~   92 (192)
T d1m6ya2          16 IEFLKPEDEKIILDCTVGEGGHSRAILEHCPGC-RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY--READFLLKTLG   92 (192)
T ss_dssp             HHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG--GGHHHHHHHTT
T ss_pred             HHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCC-eEEEeechHHHHHHHHHhhccccccccchhHHH--hhHHHHHHHcC
Confidence            445567888877665444334444333333355 999999999999988753    3222 333322  45555566654


Q ss_pred             cCCccEE-EEccCC---------------hHHHHHHHHhhccCccc
Q 022819          261 DGGADYS-FECIGD---------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~g~~d~v-ld~~g~---------------~~~~~~~~~~l~~~G~i  290 (291)
                      ...+|.| +| .|.               ...+..+.+.|+++|++
T Consensus        93 ~~~vdgIl~D-lGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l  137 (192)
T d1m6ya2          93 IEKVDGILMD-LGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRI  137 (192)
T ss_dssp             CSCEEEEEEE-CSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEE
T ss_pred             CCCcceeeec-cchhHhhhhhhhccchhHHHHHHHHHHhcCCCCee
Confidence            4588855 55 343               23466677777887765

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.60  E-value=0.29  Score=37.94  Aligned_cols=40  Identities=40%  Similarity=0.610  Sum_probs=35.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      +|.|+|.|-+|+.++..+...|. +|+++|.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            47788999999998888888898 99999999998887765

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.50  E-value=0.61  Score=37.20  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          194 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       194 ~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      .++|||+|+ |.+|..++..+...|. .|++++++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCc
Confidence            467999987 9999999999999998 8999987543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=89.48  E-value=0.22  Score=38.60  Aligned_cols=35  Identities=43%  Similarity=0.527  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .|+++.|+|.|.+|..++++++.+|+ +|++.++..
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   82 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYL   82 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTS
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCcc
Confidence            57899999999999999999999999 999998753

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=89.46  E-value=0.17  Score=37.15  Aligned_cols=75  Identities=12%  Similarity=-0.035  Sum_probs=41.1

Q ss_pred             EEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCChHHHH
Q 022819          199 IFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMIT  278 (291)
Q Consensus       199 V~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~~~~~~  278 (291)
                      ++|+|.+|.+.+..++..+. .+.+..++.++.+.+.+.+.....+..+  .          ....|+||=|+.. +.+.
T Consensus         4 fIG~G~mg~~l~~~L~~~~~-~~~v~~R~~~~~~~l~~~~~~~~~~~~~--~----------~~~~DiVil~v~d-~~i~   69 (153)
T d2i76a2           4 FVGTGTLTRFFLECLKDRYE-IGYILSRSIDRARNLAEVYGGKAATLEK--H----------PELNGVVFVIVPD-RYIK   69 (153)
T ss_dssp             EESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC--C----------CC---CEEECSCT-TTHH
T ss_pred             EEeCcHHHHHHHHHHHhCCC-EEEEEeCChhhhcchhhcccccccchhh--h----------hccCcEEEEeccc-hhhh
Confidence            56999999988876655333 4456788999888777655433322221  0          0134666666654 3445


Q ss_pred             HHHHhhccC
Q 022819          279 TALQSCCDV  287 (291)
Q Consensus       279 ~~~~~l~~~  287 (291)
                      ..+..++..
T Consensus        70 ~v~~~l~~~   78 (153)
T d2i76a2          70 TVANHLNLG   78 (153)
T ss_dssp             HHHTTTCCS
T ss_pred             HHHhhhccc
Confidence            555555433

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.41  E-value=0.27  Score=35.09  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=31.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +.+++++|+|+|.+|+-.+++.+.+|. +|..+...+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            446899999999999999999999999 888886644

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=89.29  E-value=0.49  Score=37.87  Aligned_cols=34  Identities=38%  Similarity=0.514  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      -++.+|+|.|.|.+|..+++++..+|+ +|+++..
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD   62 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD   62 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence            478999999999999999999999999 8888764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.25  E-value=0.36  Score=39.93  Aligned_cols=93  Identities=11%  Similarity=0.098  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC---------ceEeCCCCCCchHHHHHHHHhcC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV---------TEFLNPNDNNEPVQQVIKRITDG  262 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~---------~~~i~~~~~~~~~~~~~~~~~~g  262 (291)
                      ...++|||+|+|. |..+-.+++..+.++|.+++.+++-.+.++++-.         ..-+..    .|..+.+++ +..
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~----~Da~~~l~~-~~~  161 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI----ANGAEYVRK-FKN  161 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE----SCHHHHGGG-CSS
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh----hhHHHHHhc-CCC
Confidence            4568999997642 3445566666666689999999998888887421         001111    344455554 334


Q ss_pred             CccEEE-EccC----------ChHHHHHHHHhhccCccc
Q 022819          263 GADYSF-ECIG----------DTGMITTALQSCCDVRSI  290 (291)
Q Consensus       263 ~~d~vl-d~~g----------~~~~~~~~~~~l~~~G~i  290 (291)
                      .+|+|+ |+..          ..+.++.+.+.|+++|.+
T Consensus       162 ~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~  200 (295)
T d1inla_         162 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVF  200 (295)
T ss_dssp             CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEE
T ss_pred             CCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEE
Confidence            899765 3321          246788889999999865

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.24  E-value=1.1  Score=31.98  Aligned_cols=90  Identities=22%  Similarity=0.330  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcCChH--H------HHHHHH---HHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh
Q 022819          192 SKGSTVVIFGLGTV--G------LSVAQG---AKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT  260 (291)
Q Consensus       192 ~~~~~vlV~G~g~~--G------~~~i~~---a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~  260 (291)
                      ..-++|||+|+|+.  |      ++.+|.   ++..|+ ++|.+.++++....-..+ +++++--.-..++..+.++.. 
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfePlt~e~v~~Ii~~E-   81 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEPIHWEVVRKIIEKE-   81 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSCCCHHHHHHHHHHH-
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeecCCHHHHHHHHHHh-
Confidence            34578999998752  2      444554   445688 899998888764332222 344432211113333333332 


Q ss_pred             cCCccEEEEccCChHHHHHHHHhhcc
Q 022819          261 DGGADYSFECIGDTGMITTALQSCCD  286 (291)
Q Consensus       261 ~g~~d~vld~~g~~~~~~~~~~~l~~  286 (291)
                        ..|.|+-..|+...++.++++.+.
T Consensus        82 --~pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          82 --RPDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             --CCSEEECSSSHHHHHHHHHHHHHT
T ss_pred             --CcCCeEEEeeeehHhHHHHHHHHc
Confidence              789999999997777777776554

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.22  E-value=0.24  Score=40.73  Aligned_cols=44  Identities=18%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--hHHHHHHcCC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--KCEKAKAFGV  239 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~--~~~~a~~~g~  239 (291)
                      ++|||+|+ |.+|..++..+...|. +|+++++...  ....++.+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcc
Confidence            57999987 9999999998888898 9999987542  2344444443

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.20  E-value=0.57  Score=34.36  Aligned_cols=39  Identities=33%  Similarity=0.505  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhh
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEK  230 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~~~  230 (291)
                      ..+.+|.|+|+|.+|...+..+...+. .+++.+|.++++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            356789999999999998888887764 579999988876

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.17  E-value=0.21  Score=35.49  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +.+++++|+|+|.+|+-.+++...+|. +|..+.+++
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcc
Confidence            346889999999999999999999999 888887654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=89.07  E-value=0.44  Score=38.48  Aligned_cols=38  Identities=18%  Similarity=0.263  Sum_probs=27.7

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA  234 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~-~~~~~~~a  234 (291)
                      .+||.|+ +++|+++++.+...|+ +|+.+++ ++++.+.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~   43 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   43 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHH
Confidence            3566676 8999999999999999 7766544 45544433

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.03  E-value=0.27  Score=36.32  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~-~vi~~~~~~  228 (291)
                      .|++|+|+|+|..|+.++..++.++.+ +|+.++.++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            478999999999999999888887742 677776554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.01  E-value=0.27  Score=41.33  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=45.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      .++-+|||+|+ |.+|..++..+...|. .|+++++...+... .......+...+-  .+... +.+.. .++|.|+.+
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~-~~~~~~~~~~~D~--~~~~~-~~~~~-~~~d~Vih~   86 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMT-EDMFCDEFHLVDL--RVMEN-CLKVT-EGVDHVFNL   86 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSC-GGGTCSEEEECCT--TSHHH-HHHHH-TTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccchh-hhcccCcEEEeec--hhHHH-HHHHh-hcCCeEeec
Confidence            35678999987 9999999999999998 89999764433211 1122222221221  22222 22222 368999987


Q ss_pred             cCC
Q 022819          271 IGD  273 (291)
Q Consensus       271 ~g~  273 (291)
                      .+.
T Consensus        87 a~~   89 (363)
T d2c5aa1          87 AAD   89 (363)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            743

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.97  E-value=0.21  Score=39.26  Aligned_cols=97  Identities=18%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHH---h
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRI---T  260 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~--g~~~vi~~~~~~~~~~~a~~----~g~~~~i~~~~~~~~~~~~~~~~---~  260 (291)
                      +..+.++||-+|.+ .|..++.+|+++  +. ++++++.+++..+.+++    .|...-+....  .+..+.+.++   .
T Consensus        53 ~~~kpk~ILEiGt~-~G~Sti~la~al~~~g-~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~--Gd~~e~l~~l~~~~  128 (214)
T d2cl5a1          53 REYSPSLVLELGAY-CGYSAVRMARLLQPGA-RLLTMEMNPDYAAITQQMLNFAGLQDKVTILN--GASQDLIPQLKKKY  128 (214)
T ss_dssp             HHHCCSEEEEECCT-TSHHHHHHHTTCCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE--SCHHHHGGGHHHHS
T ss_pred             HhhCCCEEEEEccC-chhHHHHHHHhCCCcc-EEEEEeccHHHHHHHHHHHHHcCCCccceeee--ccccccccchhhcc
Confidence            33456789999875 577778888876  44 99999999988777753    45433111111  2222333332   2


Q ss_pred             c-CCccEEEEccCChH-----HHHHHHHhhccCccc
Q 022819          261 D-GGADYSFECIGDTG-----MITTALQSCCDVRSI  290 (291)
Q Consensus       261 ~-g~~d~vld~~g~~~-----~~~~~~~~l~~~G~i  290 (291)
                      . +.+|.+|--.....     .+..++..|++||.|
T Consensus       129 ~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvI  164 (214)
T d2cl5a1         129 DVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVL  164 (214)
T ss_dssp             CCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccccceeeecccccccccHHHHHHHhCccCCCcEE
Confidence            2 37897664322211     244555678998864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.67  E-value=0.21  Score=36.79  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=29.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD  225 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~  225 (291)
                      -++++|||+|+|.+|..-+..+...|+ +|.++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVva   43 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVS   43 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            367999999999999999999999999 888774

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.59  E-value=0.71  Score=37.60  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=57.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC-C-------------c--eEeCCCCCCchHHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG-V-------------T--EFLNPNDNNEPVQQV  255 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g-~-------------~--~~i~~~~~~~~~~~~  255 (291)
                      .+.++|||+|+|. |..+-.+++. ...+|.+++.+++-.+.++++- .             +  .++.     .+..+.
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~-----~Da~~~  143 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-----GDGFEF  143 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-----SCHHHH
T ss_pred             CCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE-----ChHHHH
Confidence            5668999997652 2333344443 4458999999999888888742 1             0  1121     334455


Q ss_pred             HHHHhcCCccEEE-EccCC---------hHHHHHHHHhhccCccc
Q 022819          256 IKRITDGGADYSF-ECIGD---------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       256 ~~~~~~g~~d~vl-d~~g~---------~~~~~~~~~~l~~~G~i  290 (291)
                      +++  .+.+|+|+ |....         .+.++.+.+.|+++|.+
T Consensus       144 l~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~  186 (276)
T d1mjfa_         144 IKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIY  186 (276)
T ss_dssp             HHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEE
T ss_pred             Hhc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceE
Confidence            553  34899665 44332         45688899999999875

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.36  E-value=1.3  Score=36.03  Aligned_cols=96  Identities=9%  Similarity=0.161  Sum_probs=55.7

Q ss_pred             hcCCCCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHHhc
Q 022819          188 VADISKGSTVVIFGL--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       188 ~~~~~~~~~vlV~G~--g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ....+++++||-.-+  |+-..   +++..+.-..|++.+.++.|++.+    +++|...++....+ ...   ......
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~---~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~-~~~---~~~~~~  169 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTT---HILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG-RYP---SQWCGE  169 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHH---HHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT-TCT---HHHHTT
T ss_pred             ccCccccceeEeccCccccchh---hhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc-ccc---chhccc
Confidence            356789999988833  54443   333333323899999999998766    45787643322211 111   111222


Q ss_pred             CCccEEE-E--ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          262 GGADYSF-E--CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       262 g~~d~vl-d--~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      +.||.|| |  |+|.                         ...+..+++.+++||+|
T Consensus       170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~l  226 (284)
T d1sqga2         170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTL  226 (284)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEE
T ss_pred             ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceE
Confidence            3788554 5  5554                         23556666778887765

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.34  E-value=0.3  Score=39.90  Aligned_cols=37  Identities=30%  Similarity=0.386  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhh
Q 022819          193 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEK  230 (291)
Q Consensus       193 ~~~~vlV~G~-g--~~G~~~i~~a~~~g~~~vi~~~~~~~~  230 (291)
                      +|+++||.|+ |  ++|++.++.+...|+ +|+...++++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchhh
Confidence            6889999987 4  799999999999999 88888776543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=88.26  E-value=0.22  Score=39.29  Aligned_cols=31  Identities=35%  Similarity=0.583  Sum_probs=27.3

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      |+|+|+|+.|++++..+...|. +|+.++.++
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   35 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            7788999999999888888999 999998765

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.24  E-value=0.23  Score=37.20  Aligned_cols=29  Identities=28%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      |+|+|+|+.|+.++..+..+|. +++.+++
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            7888999999999999999999 7888864

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.11  E-value=0.41  Score=36.67  Aligned_cols=39  Identities=28%  Similarity=0.359  Sum_probs=32.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      +|.|+|.|-+|+.++.++ +.|. .|+++|.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            477889999999887655 5798 99999999999888764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.34  Score=39.24  Aligned_cols=98  Identities=11%  Similarity=-0.009  Sum_probs=53.2

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHH----c---CCCeEEEEcCChhhHHHHHHc--CC---c-eEeCCCCCC-chHHHHH
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKA----R---GASRIIGVDTNPEKCEKAKAF--GV---T-EFLNPNDNN-EPVQQVI  256 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~----~---g~~~vi~~~~~~~~~~~a~~~--g~---~-~~i~~~~~~-~~~~~~~  256 (291)
                      .++.-+||-+|+| .|..+..+++.    .   +. .+++++.++..++.+++.  ..   . ..++..... ..+....
T Consensus        38 ~~~~~~VLDiGcG-~G~~~~~ll~~l~~~~~~~~~-~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (280)
T d1jqea_          38 TKSEIKILSIGGG-AGEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRM  115 (280)
T ss_dssp             TCSEEEEEEETCT-TSHHHHHHHHHHHHHSTTCEE-EEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHH
T ss_pred             CCCCCeEEEEcCC-CCHHHHHHHHHhhhhccCCce-EEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchh
Confidence            3445578989875 23333333332    1   23 578999999888888653  10   0 111111100 1111111


Q ss_pred             HHH-hcCCccEEEEc-----cCC-hHHHHHHHHhhccCccc
Q 022819          257 KRI-TDGGADYSFEC-----IGD-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       257 ~~~-~~g~~d~vld~-----~g~-~~~~~~~~~~l~~~G~i  290 (291)
                      ... ....||+|+-.     +.. ...++.+.++|+++|.+
T Consensus       116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l  156 (280)
T d1jqea_         116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKM  156 (280)
T ss_dssp             TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEE
T ss_pred             cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEE
Confidence            111 22378988762     222 46789999999999975

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.08  E-value=0.25  Score=38.06  Aligned_cols=31  Identities=16%  Similarity=0.392  Sum_probs=27.7

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      |+|+|+|..|+.++..+...|. +|.+++.++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            6788999999999999988998 999998865

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=88.07  E-value=0.23  Score=39.61  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=28.3

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      |+|+|+|+.|++++..+...|. +|++++.+++
T Consensus         7 ViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           7 NIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            7888999999999998988998 8999987754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=88.02  E-value=0.48  Score=35.08  Aligned_cols=41  Identities=17%  Similarity=0.211  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE  232 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~  232 (291)
                      ++..+|.|+|+|.+|..++.++...+...++.+|.++++.+
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~   45 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE   45 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence            45678999999999988888878778768999998876543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.81  E-value=0.52  Score=35.97  Aligned_cols=37  Identities=38%  Similarity=0.467  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK  230 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~  230 (291)
                      .++++.|+|.|.+|..++++++.+|+ +|++.++...+
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~   79 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP   79 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCCh
Confidence            57899999999999999999999999 99999875543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.67  E-value=0.78  Score=32.56  Aligned_cols=61  Identities=21%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             HHhhcCCCCCCEEEEE-cCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCC
Q 022819          185 AWNVADISKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP  245 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~-G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~  245 (291)
                      +++.++++.-+.+++. ..-..-+.+.++++.+|.+++|+...+++..+.++++|++.++++
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p  118 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSP  118 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECH
T ss_pred             hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECH
Confidence            4566777777766664 334566788889999999889999888899999999999998865

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.62  E-value=1.5  Score=30.73  Aligned_cols=71  Identities=14%  Similarity=0.144  Sum_probs=49.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      .++|.|.|.+|..++..++  +. .+++++.++++.+.++..|...+. -+   ..-.+.+++..-..++.++-++..
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~-Gd---~~~~~~L~~a~i~~A~~vi~~~~~   72 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVH-GD---PTRVSDLEKANVRGARAVIVNLES   72 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEE-SC---TTSHHHHHHTTCTTCSEEEECCSS
T ss_pred             EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCccccc-cc---cCCHHHHHHhhhhcCcEEEEeccc
Confidence            4788899999998877664  44 677788889998888888875543 22   222345565544478888877776

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.62  E-value=0.24  Score=38.32  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=26.5

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      |+|+|+|+.|+.++..+..+|. +|++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~   35 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            6788999999999999999999 88888764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=87.37  E-value=0.47  Score=36.33  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      .+.++.|+|.|.+|...++.++.+|. +|+..++...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   78 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRL   78 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCC
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeeccc
Confidence            57899999999999999999999999 9999987543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.17  E-value=0.43  Score=33.67  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +.+++++|+|+|.+|+-++..+..+|. +|..+.+.+
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            345789999999999999999999999 888887654

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.16  E-value=5.2  Score=32.12  Aligned_cols=100  Identities=23%  Similarity=0.221  Sum_probs=63.4

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCceEeCCCC----------------
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT--NPEKCEKAKAFGVTEFLNPND----------------  247 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~--~~~~~~~a~~~g~~~~i~~~~----------------  247 (291)
                      .+....+++.+++..++|.-|.++...++.+|.+-++.+..  ++.+.+.++.+|+..+.....                
T Consensus        53 ~~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~  132 (302)
T d1fcja_          53 EKRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVAS  132 (302)
T ss_dssp             HHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhh
Confidence            34455677777666678999999999999999865555543  456777888888765431111                


Q ss_pred             -----------CCc--------hHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhc
Q 022819          248 -----------NNE--------PVQQVIKRITDGGADYSFECIGDTGMITTALQSCC  285 (291)
Q Consensus       248 -----------~~~--------~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~  285 (291)
                                 ...        .....+.+..++.+|.++-++|+-..+......++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk  189 (302)
T d1fcja_         133 DPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIK  189 (302)
T ss_dssp             STTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHH
T ss_pred             hccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeee
Confidence                       000        11222333334468999999987556555555554

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.94  E-value=1.5  Score=31.96  Aligned_cols=70  Identities=20%  Similarity=0.203  Sum_probs=43.2

Q ss_pred             CCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce-EeCCCCCCchHHHHHHHHhcCCc
Q 022819          192 SKGSTVVIFGL--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-FLNPNDNNEPVQQVIKRITDGGA  264 (291)
Q Consensus       192 ~~~~~vlV~G~--g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~-~i~~~~~~~~~~~~~~~~~~g~~  264 (291)
                      -++.+||=+++  |.+|+.    |..+|+++|+.++.+.+..+.+++    ++... +....   .+....+.. ....+
T Consensus        13 ~~g~~vlDl~~GtG~~~ie----a~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~---~D~~~~l~~-~~~~f   84 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIE----AVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK---MEAERAIDC-LTGRF   84 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHH----HHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC---SCHHHHHHH-BCSCE
T ss_pred             CCCCeEEEcCCccCHHHHH----HHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc---ccccccccc-ccccc
Confidence            46888888854  666653    234788899999999888776644    45433 21111   233344433 33489


Q ss_pred             cEEEE
Q 022819          265 DYSFE  269 (291)
Q Consensus       265 d~vld  269 (291)
                      |+||-
T Consensus        85 DiIf~   89 (152)
T d2esra1          85 DLVFL   89 (152)
T ss_dssp             EEEEE
T ss_pred             ceeEe
Confidence            98774

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.58  E-value=0.31  Score=40.30  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=28.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE  229 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~  229 (291)
                      .|+|+|+|+.|++++..++..|. .+++++..++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCC
Confidence            47888999999999999999999 8889987653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=86.51  E-value=0.26  Score=39.21  Aligned_cols=31  Identities=29%  Similarity=0.546  Sum_probs=27.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      +|+|+|+|..|+.++..+...|. +|.+++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            48899999999999999999999 89999764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.25  E-value=0.23  Score=42.07  Aligned_cols=31  Identities=19%  Similarity=0.390  Sum_probs=26.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      +|||+|+ |.+|..++..+...|.+.|++++.
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            5899987 999999999998889866777764

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=86.21  E-value=2.8  Score=34.52  Aligned_cols=52  Identities=23%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCceEe
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT--NPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~--~~~~~~~a~~~g~~~~i  243 (291)
                      .+..+|+...+|..|.+++..++.+|.+.++.+..  +.+|.+.++.+|+..+.
T Consensus        73 ~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~  126 (331)
T d1tdja1          73 QKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL  126 (331)
T ss_dssp             SCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEEC
T ss_pred             CCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEE
Confidence            45566666677899999999999999955555533  45678888999987554

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.15  E-value=0.31  Score=37.64  Aligned_cols=30  Identities=17%  Similarity=0.303  Sum_probs=26.7

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      |+|+|+|+.|+.++..|..+|. +|..++..
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6788999999999999999999 88888764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.10  E-value=0.19  Score=38.20  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=28.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ++..|+|+|+|+.|+.++..+..+|. +++.+++.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEee
Confidence            45579999999999999999999999 77777654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.98  E-value=1.7  Score=30.60  Aligned_cols=90  Identities=14%  Similarity=0.133  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCChH--H------HHHHH---HHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhc
Q 022819          193 KGSTVVIFGLGTV--G------LSVAQ---GAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD  261 (291)
Q Consensus       193 ~~~~vlV~G~g~~--G------~~~i~---~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~  261 (291)
                      ..++|||+|+|+.  |      .+.+|   .+|..|. ++|.+.++++....-..+ +++++--.-..+...+.++..  
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVstd~d~-aD~lYfeplt~e~v~~Ii~~E--   78 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVSTDYDT-SDRLYFEPVTLEDVLEIVRIE--   78 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTTSTTS-SSEEECCCCSHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhcChhh-cCceEEccCCHHHHHHHHHHh--
Confidence            3578999998752  2      44444   4556688 899998888764321111 334332111012223323322  


Q ss_pred             CCccEEEEccCChHHHHHHHHhhccC
Q 022819          262 GGADYSFECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       262 g~~d~vld~~g~~~~~~~~~~~l~~~  287 (291)
                       ..|.|+-..|+...++.+.++-+.|
T Consensus        79 -~p~~ii~~~GGQtalnla~~L~~~g  103 (121)
T d1a9xa4          79 -KPKGVIVQYGGQTPLKLARALEAAG  103 (121)
T ss_dssp             -CCSEEECSSSTHHHHTTHHHHHHTT
T ss_pred             -CCCEEEeehhhhhHHHHHHHHHHcC
Confidence             7899999999976666666655443

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.94  E-value=4.5  Score=33.08  Aligned_cols=58  Identities=31%  Similarity=0.322  Sum_probs=41.4

Q ss_pred             HhhcCCCCCCEEEEE-cCChHHHHHHHHHHHcCCCeEEEEc--CChhhHHHHHHcCCceEe
Q 022819          186 WNVADISKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVD--TNPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~-G~g~~G~~~i~~a~~~g~~~vi~~~--~~~~~~~~a~~~g~~~~i  243 (291)
                      .+...++.+...+|. .+|..|.++...++.+|.+-++++.  .++.|++.++.+|+..++
T Consensus        56 ~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~  116 (320)
T d1z7wa1          56 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVL  116 (320)
T ss_dssp             HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HHcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEE
Confidence            344555666555554 6799999999999999995555553  356788889999987543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=85.47  E-value=1.9  Score=32.22  Aligned_cols=89  Identities=22%  Similarity=0.276  Sum_probs=52.1

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---ChhhHHHHHHc----CC---ce-------EeCCCC----CCchHHH
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDT---NPEKCEKAKAF----GV---TE-------FLNPND----NNEPVQQ  254 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~---~~~~~~~a~~~----g~---~~-------~i~~~~----~~~~~~~  254 (291)
                      +|-|.|-|-+|+++.+.+...+. .++++-.   +.+.+.++-++    |.   +.       .++-+.    ...+. .
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p-~   79 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKP-E   79 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSG-G
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCCh-H
Confidence            57788999999999999988888 6666632   23556665443    11   00       111000    00010 0


Q ss_pred             HHHHHhcCCccEEEEccCChHHHHHHHHhhccC
Q 022819          255 VIKRITDGGADYSFECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       255 ~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~  287 (291)
                      .+. +..-++|+|+||+|.....+.+...+..+
T Consensus        80 ~i~-W~~~gvD~ViEcTG~f~~~~~~~~hl~~g  111 (169)
T d1dssg1          80 NIP-WSKAGAEYIVESTGVFTTIEKASAHFKGG  111 (169)
T ss_dssp             GCC-HHHHTCCEEEECSSSCCSHHHHGGGGTTT
T ss_pred             HCC-ccccCCCEEEecCceEcCHHHHHHHHhcC
Confidence            110 10118999999999866666777766644

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.46  E-value=0.4  Score=36.92  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=26.3

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ++|+|+|+.|+.++..|..+|. +|+.++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            6778999999999999999999 88888654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=85.35  E-value=0.15  Score=41.11  Aligned_cols=95  Identities=15%  Similarity=0.074  Sum_probs=57.6

Q ss_pred             HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce---EeCCCCCCchHHHHHH
Q 022819          185 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE---FLNPNDNNEPVQQVIK  257 (291)
Q Consensus       185 l~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~---~i~~~~~~~~~~~~~~  257 (291)
                      +.....+.+..+||-+|+| .|..+..+++...--++++++. ++.++.+++    .+...   ++..+     +    .
T Consensus        72 ~~~~~d~~~~~~VLDvGcG-~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D-----~----~  140 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVGGG-KGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGD-----F----F  140 (253)
T ss_dssp             HHHHSCCTTCSEEEEETCT-TSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECC-----T----T
T ss_pred             HHhhcCCccCCEEEEeCCC-CCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhcccc-----c----h
Confidence            4455667888999999886 5777888888774338888886 444444433    33221   22111     1    0


Q ss_pred             HHhcCCccEEEEcc-----CCh---HHHHHHHHhhccCccc
Q 022819          258 RITDGGADYSFECI-----GDT---GMITTALQSCCDVRSI  290 (291)
Q Consensus       258 ~~~~g~~d~vld~~-----g~~---~~~~~~~~~l~~~G~i  290 (291)
                      +....++|+|+-..     +.+   ..++.+.+.|++||+|
T Consensus       141 ~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l  181 (253)
T d1tw3a2         141 EPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRI  181 (253)
T ss_dssp             SCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEE
T ss_pred             hhcccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEE
Confidence            11123688877432     112   3478888999999986

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=1.1  Score=36.94  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=27.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      ++|||+|+ |-+|..++..+...|. .|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            68999987 9999999999999998 8888863

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.13  E-value=0.95  Score=33.24  Aligned_cols=39  Identities=15%  Similarity=0.192  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC  231 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~  231 (291)
                      |..+|.|+|+|.+|...+.++...+...++.+|.++++.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            456899999999999888888888888999999877653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=85.11  E-value=0.55  Score=37.33  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            3478999999999999999999999999999875

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.04  E-value=0.41  Score=37.09  Aligned_cols=31  Identities=32%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      |+|+|+|+.|+.++..|..+|. +|+.++..+
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~-kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            6788999999999988889999 888887643

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.89  E-value=0.41  Score=37.09  Aligned_cols=30  Identities=27%  Similarity=0.302  Sum_probs=27.1

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ++|+|+|+.|+.++..|..+|. +|..++..
T Consensus         8 lvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           8 LLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            7788999999999999999999 89888754

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=84.81  E-value=1.1  Score=33.56  Aligned_cols=89  Identities=16%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCce-----EeCCCC-------------CCchHHHH
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDT--NPEKCEKAKAFGVTE-----FLNPND-------------NNEPVQQV  255 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~--~~~~~~~a~~~g~~~-----~i~~~~-------------~~~~~~~~  255 (291)
                      +|.|.|-|-+|+.+.+++...+. .++++-.  +.+.+.++-++-..+     .+...+             .+.+ .+.
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~-p~~   79 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD-PKE   79 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS-GGG
T ss_pred             EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCC-hHH
Confidence            47888999999999999888888 6777632  223444444431110     000000             0011 011


Q ss_pred             HHHHhcCCccEEEEccCChHHHHHHHHhhccC
Q 022819          256 IKRITDGGADYSFECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       256 ~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~  287 (291)
                      +. +..-++|+|+||+|.....+.+...+..+
T Consensus        80 i~-W~~~gvdiViEcTG~f~~~~~~~~hl~~g  110 (168)
T d2g82a1          80 IP-WAEAGVGVVIESTGVFTDADKAKAHLEGG  110 (168)
T ss_dssp             CC-TGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred             Cc-ccccCCceeEeccccccchHHhhhhhccc
Confidence            11 11127999999999866666666666643

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=84.73  E-value=0.67  Score=35.41  Aligned_cols=85  Identities=20%  Similarity=0.227  Sum_probs=54.3

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEc
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC  270 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~  270 (291)
                      +.++.+||-+|+| .|..+..+     . +++++|.+++.++.+++.+... +..+.  .++     .+.++.||+|+..
T Consensus        34 ~~~~~~vLDiGcG-~G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~~-~~~d~--~~l-----~~~~~~fD~I~~~   98 (208)
T d1vlma_          34 LLPEGRGVEIGVG-TGRFAVPL-----K-IKIGVEPSERMAEIARKRGVFV-LKGTA--ENL-----PLKDESFDFALMV   98 (208)
T ss_dssp             HCCSSCEEEETCT-TSTTHHHH-----T-CCEEEESCHHHHHHHHHTTCEE-EECBT--TBC-----CSCTTCEEEEEEE
T ss_pred             hCCCCeEEEECCC-Cccccccc-----c-eEEEEeCChhhccccccccccc-ccccc--ccc-----ccccccccccccc
Confidence            4567789999986 34433333     2 5689999999999999876543 22221  111     0112378988763


Q ss_pred             -----cCC-hHHHHHHHHhhccCccc
Q 022819          271 -----IGD-TGMITTALQSCCDVRSI  290 (291)
Q Consensus       271 -----~g~-~~~~~~~~~~l~~~G~i  290 (291)
                           +.. ...+..+.+.|++||++
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pgG~l  124 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKGGYL  124 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEE
T ss_pred             cccccccccccchhhhhhcCCCCceE
Confidence                 222 34688999999999975

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=84.72  E-value=0.36  Score=39.87  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             EEEEcCChHHHHHHHHHH-----HcCCCeEEEEcCCh
Q 022819          197 VVIFGLGTVGLSVAQGAK-----ARGASRIIGVDTNP  228 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~-----~~g~~~vi~~~~~~  228 (291)
                      |+|+|+|+.|++++.++.     ..|. +|+++++.+
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            788899999998887763     4688 888888654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.71  E-value=0.75  Score=35.66  Aligned_cols=91  Identities=22%  Similarity=0.215  Sum_probs=59.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCce--EeCCCCCCchHHHHHHHHhcCCccEE
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYS  267 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a----~~~g~~~--~i~~~~~~~~~~~~~~~~~~g~~d~v  267 (291)
                      ...+|=+|+| .|..++.+|+..--..+++++.++.....+    ++.+...  ++..+.  .++.   ..+..+.+|.|
T Consensus        32 ~plvLdIGcG-~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da--~~l~---~~~~~~~~~~i  105 (204)
T d1yzha1          32 NPIHVEVGSG-KGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG--SDLT---DYFEDGEIDRL  105 (204)
T ss_dssp             CCEEEEESCT-TSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS--SCGG---GTSCTTCCSEE
T ss_pred             CCeEEEEecc-CCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCH--HHHh---hhccCCceehh
Confidence            3456667887 688999999987444999999998876665    3345443  232221  2221   12223367877


Q ss_pred             EEccCC--------------hHHHHHHHHhhccCccc
Q 022819          268 FECIGD--------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       268 ld~~g~--------------~~~~~~~~~~l~~~G~i  290 (291)
                      +-....              +..++...+.|++||.|
T Consensus       106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l  142 (204)
T d1yzha1         106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEI  142 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEE
T ss_pred             cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEE
Confidence            655442              46788999999999976

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.66  E-value=0.45  Score=37.09  Aligned_cols=31  Identities=32%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      |+|+|+|+.|+.++..+..+|. +|+.++..+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            6778999999999999999999 888897644

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.59  E-value=0.82  Score=34.22  Aligned_cols=42  Identities=21%  Similarity=0.325  Sum_probs=36.2

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV  239 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~  239 (291)
                      |-|+|.|.+|...+.-+...|. .|++.++++++.+.+.+.+.
T Consensus         4 IGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           4 VGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred             EEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence            6688999999999988888999 89999999999887765443

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.55  E-value=0.83  Score=33.63  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      .-+++|+|+|+|.+|.=.+..+..+|++.|..+.+.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            346789999999999999999999999778787554

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=84.44  E-value=0.97  Score=34.84  Aligned_cols=49  Identities=29%  Similarity=0.454  Sum_probs=35.4

Q ss_pred             HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 022819          186 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF  237 (291)
Q Consensus       186 ~~~~~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~  237 (291)
                      ....++ +|++||-+|+|. |..++. +..+|+.+|++++.+++..+.+++-
T Consensus        42 ~~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N   90 (197)
T d1ne2a_          42 YNDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRN   90 (197)
T ss_dssp             HHHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHH
T ss_pred             HHcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHc
Confidence            444555 589999998752 443333 4456877899999999998888763

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.32  E-value=0.38  Score=39.50  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=27.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      -++|+|+|..|+.++..+...|. +|.+++.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            37899999999999999988898 899998754

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.01  E-value=1  Score=37.20  Aligned_cols=34  Identities=18%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          192 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       192 ~~~~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      ...+++||+|+ |.+|..++..+...|. +|+++++
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            35578999987 9999999999999999 9999975

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=84.01  E-value=0.51  Score=37.58  Aligned_cols=31  Identities=16%  Similarity=0.238  Sum_probs=27.2

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      |+|+|+|.+|++++.-+...|. +|+++++.+
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            7888999999999888888898 999998753

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.97  E-value=0.69  Score=35.32  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      .+.+|.|+|.|.+|...+++++.+|+ +|+..++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence            57899999999999999999999999 999998644

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=83.87  E-value=0.2  Score=37.72  Aligned_cols=77  Identities=21%  Similarity=0.337  Sum_probs=42.1

Q ss_pred             EEEEEcCChHHHHHHHHHHHc-CCCeEEEE-cCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKAR-GASRIIGV-DTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~-g~~~vi~~-~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|.|+|+|.+|...+...+.. ++ .++++ ++++++..      ...+..+.+    .    ..+ ...+|+|+.|++.
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~~~------~~~~~~~~~----~----~~~-~~~~D~Vvi~tp~   68 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATLDT------KTPVFDVAD----V----DKH-ADDVDVLFLCMGS   68 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCCSS------SSCEEEGGG----G----GGT-TTTCSEEEECSCT
T ss_pred             eEEEECChHHHHHHHHHHHhCCCc-EEEEEEeccccccc------ccccccchh----h----hhh-ccccceEEEeCCC
Confidence            588999999999888877765 56 55544 44433211      111111111    0    000 1246677766666


Q ss_pred             hHHHHHHHHhhccCc
Q 022819          274 TGMITTALQSCCDVR  288 (291)
Q Consensus       274 ~~~~~~~~~~l~~~G  288 (291)
                      ....+.+..+|..|-
T Consensus        69 ~~h~~~a~~aL~aG~   83 (170)
T d1f06a1          69 ATDIPEQAPKFAQFA   83 (170)
T ss_dssp             TTHHHHHHHHHTTTS
T ss_pred             cccHHHHHHHHHCCC
Confidence            555666666665543

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=83.31  E-value=2.1  Score=33.56  Aligned_cols=85  Identities=7%  Similarity=-0.004  Sum_probs=51.0

Q ss_pred             CEEEEEcCCh----HHHHHHHHHHHc--CCCeEEE-EcCChhhHH-HHHHcCCceEeCCCCCCchHHHHHHHHhcCCccE
Q 022819          195 STVVIFGLGT----VGLSVAQGAKAR--GASRIIG-VDTNPEKCE-KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADY  266 (291)
Q Consensus       195 ~~vlV~G~g~----~G~~~i~~a~~~--g~~~vi~-~~~~~~~~~-~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~  266 (291)
                      =+|.|+|+|.    ++...+...+.+  ++ ++++ .+++.++.+ .+++++......++    ++.+.+.   ...+|+
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~---~~~iD~   88 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQLQLKHATGFD----SLESFAQ---YKDIDM   88 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHTTCTTCEEES----CHHHHHH---CTTCSE
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhcccccceeec----chhhccc---ccccce
Confidence            4678888865    455555555544  46 6664 566666654 45667665433232    2322222   237899


Q ss_pred             EEEccCChHHHHHHHHhhccC
Q 022819          267 SFECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       267 vld~~g~~~~~~~~~~~l~~~  287 (291)
                      |+.++......+.+..+|..|
T Consensus        89 V~i~tp~~~h~~~~~~al~aG  109 (237)
T d2nvwa1          89 IVVSVKVPEHYEVVKNILEHS  109 (237)
T ss_dssp             EEECSCHHHHHHHHHHHHHHS
T ss_pred             eeccCCCcchhhHHHHHHHhc
Confidence            999988777777777776643

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.19  E-value=0.69  Score=38.04  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD  225 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~  225 (291)
                      ++.+|+|.|-|.+|..+++.+..+|+ +|+++.
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs   66 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG   66 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            67899999999999999999999999 888875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=0.5  Score=38.57  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=27.1

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      |+|+|+|..|++++..++..|. +|++++.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            6788999999999999999999 899997543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.07  E-value=0.58  Score=35.99  Aligned_cols=30  Identities=33%  Similarity=0.477  Sum_probs=26.3

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      ++|+|+|+.|+.++..|..+|. +|..++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6778999999999999999999 88888653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.93  E-value=0.58  Score=35.49  Aligned_cols=31  Identities=16%  Similarity=0.155  Sum_probs=26.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      ..|+|+|+|+.|+.++..+..+|. ++++++.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~   36 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEG   36 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEe
Confidence            578999999999999988888999 7777764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.90  E-value=0.65  Score=38.48  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCh
Q 022819          195 STVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNP  228 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g~-~~vi~~~~~~  228 (291)
                      ++|+|+|+|+.|++++..++..|. ..|+++++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            689999999999988876665553 3899998765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.81  E-value=0.56  Score=35.97  Aligned_cols=30  Identities=20%  Similarity=0.330  Sum_probs=26.3

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      |+|+|+|+-|+.++..|..+|. +|+.++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            6778999999999999999999 88888753

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=82.72  E-value=1.9  Score=31.60  Aligned_cols=79  Identities=10%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             EEEEEcCChHHHH-HHHHHHHc-CCCeEEE-EcCChhhHH-HHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEcc
Q 022819          196 TVVIFGLGTVGLS-VAQGAKAR-GASRIIG-VDTNPEKCE-KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI  271 (291)
Q Consensus       196 ~vlV~G~g~~G~~-~i~~a~~~-g~~~vi~-~~~~~~~~~-~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~  271 (291)
                      +|.|+|+|.+|.- .+...+.. +. .+++ .++++++.+ .+++++... .      +++.+.+     ..+|+|+-++
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~-~i~~v~d~~~~~~~~~~~~~~~~~-~------~~~~~l~-----~~~D~V~I~t   69 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPICESWRIPY-A------DSLSSLA-----ASCDAVFVHS   69 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHHHHHHTCCB-C------SSHHHHH-----TTCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEechhHhhhhhhhcccccc-c------ccchhhh-----hhcccccccc
Confidence            5788999999964 56666654 66 5554 456666544 445666542 1      1221111     2478888888


Q ss_pred             CChHHHHHHHHhhccC
Q 022819          272 GDTGMITTALQSCCDV  287 (291)
Q Consensus       272 g~~~~~~~~~~~l~~~  287 (291)
                      ......+.+..++..|
T Consensus        70 p~~~h~~~~~~al~~g   85 (164)
T d1tlta1          70 STASHFDVVSTLLNAG   85 (164)
T ss_dssp             CTTHHHHHHHHHHHTT
T ss_pred             cchhcccccccccccc
Confidence            8767777777777655

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=82.60  E-value=0.9  Score=33.61  Aligned_cols=33  Identities=39%  Similarity=0.495  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEc
Q 022819          193 KGSTVVIFGLGTVGLSVAQGAKARGAS-RIIGVD  225 (291)
Q Consensus       193 ~~~~vlV~G~g~~G~~~i~~a~~~g~~-~vi~~~  225 (291)
                      ++++|+|+|+|++|+-++..++.+|.+ +|+.+.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence            578999999999999999999999984 344443

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.48  E-value=3.2  Score=34.08  Aligned_cols=96  Identities=14%  Similarity=0.128  Sum_probs=56.5

Q ss_pred             hhcCCCCCCEEEEE-cC-ChHHHHHHHHHHHcC-CCeEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHH
Q 022819          187 NVADISKGSTVVIF-GL-GTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRI  259 (291)
Q Consensus       187 ~~~~~~~~~~vlV~-G~-g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~~~a----~~~g~~~~i~~~~~~~~~~~~~~~~  259 (291)
                      .....++|++||-. ++ |+-   +.+++..++ -..+++.+.+++|+..+    +++|...++....+...+     ..
T Consensus       110 ~~l~~~~g~~vlD~CAapGgK---t~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~-----~~  181 (313)
T d1ixka_         110 VALDPKPGEIVADMAAAPGGK---TSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI-----GE  181 (313)
T ss_dssp             HHHCCCTTCEEEECCSSCSHH---HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG-----GG
T ss_pred             hcccCCccceeeecccchhhh---hHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc-----cc
Confidence            34567899998877 33 533   334444443 22799999999988765    456766544333211111     11


Q ss_pred             hcCCccEEEE---ccCC-------------------------hHHHHHHHHhhccCccc
Q 022819          260 TDGGADYSFE---CIGD-------------------------TGMITTALQSCCDVRSI  290 (291)
Q Consensus       260 ~~g~~d~vld---~~g~-------------------------~~~~~~~~~~l~~~G~i  290 (291)
                      ..+.||.||-   |+|.                         ...+..+++++++||+|
T Consensus       182 ~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~l  240 (313)
T d1ixka_         182 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGIL  240 (313)
T ss_dssp             GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEE
Confidence            2336885554   4443                         23566777788888865

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.42  E-value=0.11  Score=41.66  Aligned_cols=44  Identities=18%  Similarity=0.124  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          191 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       191 ~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      ..++++||-+|+|. |..++.+++. +...|+++|-++..++.+++
T Consensus        49 ~~~g~~vLDlGcG~-G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          49 GLQGDTLIDIGSGP-TIYQVLAACD-SFQDITLSDFTDRNREELEK   92 (257)
T ss_dssp             SCCEEEEEESSCTT-CCGGGTTGGG-TEEEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCC-CHhHHHHhcc-ccCcEEEecCCHHHHHHHHH
Confidence            45678888889863 4333344443 45489999999999988865

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=82.17  E-value=3.4  Score=30.76  Aligned_cols=87  Identities=15%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHc---CCCeEEEEcC--ChhhHHHHHHc----CC---ce-------EeCC------CCCCc
Q 022819          196 TVVIFGLGTVGLSVAQGAKAR---GASRIIGVDT--NPEKCEKAKAF----GV---TE-------FLNP------NDNNE  250 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~---g~~~vi~~~~--~~~~~~~a~~~----g~---~~-------~i~~------~~~~~  250 (291)
                      +|.|.|-|-+|+.+.+.+...   .. .|+++-.  +.+.+.++-++    |.   ..       .++-      ....+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            688899999999999987753   35 7777722  33455555443    21   00       1110      00001


Q ss_pred             hHHHHHHHHhcCCccEEEEccCChHHHHHHHHhhccC
Q 022819          251 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDV  287 (291)
Q Consensus       251 ~~~~~~~~~~~g~~d~vld~~g~~~~~~~~~~~l~~~  287 (291)
                      .-.+ +.++   ++|+|+||+|.....+.+...+..|
T Consensus        81 ~~i~-W~~~---gvD~ViEcTG~f~t~~~~~~hl~~G  113 (169)
T d1hdgo1          81 SKLP-WKDL---GVDFVIESTGVFRNREKAELHLQAG  113 (169)
T ss_dssp             GGSC-HHHH---TCCEEEECSSSCCBHHHHTHHHHTT
T ss_pred             hhCC-cccc---CCCEEEEecceeccccchhhhccCC
Confidence            1000 1111   7999999999865666666666544

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.87  E-value=1.7  Score=34.27  Aligned_cols=33  Identities=30%  Similarity=0.480  Sum_probs=28.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHH-HHcCCCeEEEEc
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGA-KARGASRIIGVD  225 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a-~~~g~~~vi~~~  225 (291)
                      -++.+|+|.|.|.+|..+++.+ +..|+ +++++.
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS   62 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence            3688999999999999999877 57899 888775

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.68  E-value=2.3  Score=36.22  Aligned_cols=55  Identities=15%  Similarity=0.132  Sum_probs=42.0

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCceEeC
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT--NPEKCEKAKAFGVTEFLN  244 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~--~~~~~~~a~~~g~~~~i~  244 (291)
                      +.+++.+|+-..+|..|.+++.+|+.+|.+-+|++..  +++|.+.++.+|+..++.
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeec
Confidence            4677776555567999999999999999955555543  557888899999977654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.67  E-value=0.69  Score=37.59  Aligned_cols=31  Identities=39%  Similarity=0.674  Sum_probs=27.0

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      |+|+|+|..|+.++.-|...|. +|++++..+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            7888999999999999999999 899997643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=81.61  E-value=0.7  Score=36.90  Aligned_cols=30  Identities=23%  Similarity=0.506  Sum_probs=26.4

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      |+|+|+|..|++++.-+...|. +|++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            7888999999999988888998 89999764

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.41  E-value=8.6  Score=30.76  Aligned_cols=47  Identities=23%  Similarity=0.316  Sum_probs=36.3

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCceEe
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDT--NPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~--~~~~~~~a~~~g~~~~i  243 (291)
                      |+..++|..|.++...++.+|.+-+|.+..  ++.|.+.++.+|+..++
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~  106 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVL  106 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEE
Confidence            444467999999999999999866666643  56788899999987644

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.21  E-value=1.7  Score=32.82  Aligned_cols=70  Identities=14%  Similarity=0.197  Sum_probs=45.3

Q ss_pred             CCCCCEEEEE--cCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCce---EeCCCCCCchHHHHHHHHh-
Q 022819          191 ISKGSTVVIF--GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE---FLNPNDNNEPVQQVIKRIT-  260 (291)
Q Consensus       191 ~~~~~~vlV~--G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~----~g~~~---~i~~~~~~~~~~~~~~~~~-  260 (291)
                      ..++.+||=+  |.|.+|+.+    ...|++.|+.++.+.+..+.+++    ++...   ++.     .+..+.+..+. 
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea----~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~-----~D~~~~l~~~~~  109 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEA----VSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK-----MDANRALEQFYE  109 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHH----HHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE-----SCHHHHHHHHHH
T ss_pred             hcCCCEEEEccccccccccee----eecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccc-----ccchhhhhhhcc
Confidence            4578888887  457777643    34788899999999988887754    44432   222     33444555432 


Q ss_pred             cC-CccEEEE
Q 022819          261 DG-GADYSFE  269 (291)
Q Consensus       261 ~g-~~d~vld  269 (291)
                      .+ .||+||=
T Consensus       110 ~~~~fDlIfl  119 (182)
T d2fhpa1         110 EKLQFDLVLL  119 (182)
T ss_dssp             TTCCEEEEEE
T ss_pred             cCCCcceEEe
Confidence            23 7998774

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.01  E-value=0.93  Score=37.10  Aligned_cols=31  Identities=26%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          195 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       195 ~~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      ++|||+|+ |.+|..++..+...|. .|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            68999987 9999999999988998 8999875

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=80.92  E-value=1  Score=35.85  Aligned_cols=62  Identities=18%  Similarity=0.440  Sum_probs=37.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCccEEEEccCC
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD  273 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d~vld~~g~  273 (291)
                      +|||+|+ |.+|..++..+...|  .++++++....      +    ..|..+ ...+.+.++..   .+|+||.+.+.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~~------~----~~Dl~~-~~~~~~~i~~~---~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG--NLIALDVHSKE------F----CGDFSN-PKGVAETVRKL---RPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCSS------S----CCCTTC-HHHHHHHHHHH---CCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCcc------c----cCcCCC-HHHHHHHHHHc---CCCEEEEeccc
Confidence            5899987 999999988777766  46666554322      1    112211 12222223322   78999998863

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=80.88  E-value=1.6  Score=31.73  Aligned_cols=37  Identities=41%  Similarity=0.611  Sum_probs=30.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhH
Q 022819          195 STVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKC  231 (291)
Q Consensus       195 ~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~  231 (291)
                      ++|.|+|+|.+|..++..+...| +.+++.+|.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            57889999999998888777776 46899999888763

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=80.76  E-value=0.81  Score=36.99  Aligned_cols=32  Identities=34%  Similarity=0.524  Sum_probs=26.1

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTN  227 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~  227 (291)
                      .|+|+|+|.+|++++.-+...|..+|.+++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            48899999999988877767887468888765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.65  E-value=0.7  Score=35.91  Aligned_cols=29  Identities=28%  Similarity=0.452  Sum_probs=26.0

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 022819          197 VVIFGLGTVGLSVAQGAKARGASRIIGVDT  226 (291)
Q Consensus       197 vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~  226 (291)
                      |+|+|+|+-|+.++..|..+|. +|..++.
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~   34 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDF   34 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCC-CEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            6788999999999999999999 8888874

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.60  E-value=0.89  Score=37.45  Aligned_cols=32  Identities=25%  Similarity=0.379  Sum_probs=28.0

Q ss_pred             EE-EEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 022819          196 TV-VIFGL-GTVGLSVAQGAKARGASRIIGVDTNP  228 (291)
Q Consensus       196 ~v-lV~G~-g~~G~~~i~~a~~~g~~~vi~~~~~~  228 (291)
                      +| ||+|+ |-+|..++..+...|. +|+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            56 89987 9999999999999999 999998753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=80.58  E-value=1.6  Score=31.76  Aligned_cols=38  Identities=32%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhhH
Q 022819          194 GSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKC  231 (291)
Q Consensus       194 ~~~vlV~G~g~~G~~~i~~a~~~g-~~~vi~~~~~~~~~  231 (291)
                      ..+|.|+|+|.+|...+..+...| +..++.+|.++++.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            457899999999999888888777 35899999888654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.52  E-value=0.65  Score=37.33  Aligned_cols=45  Identities=16%  Similarity=0.041  Sum_probs=31.7

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          190 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       190 ~~~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      +..++.++|-+|+|+ |...+..+.... .+|+++|-++..++.+++
T Consensus        51 g~~~g~~vLDiGcG~-g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          51 GEVSGRTLIDIGSGP-TVYQLLSACSHF-EDITMTDFLEVNRQELGR   95 (263)
T ss_dssp             SCSCCSEEEEETCTT-CCGGGTTGGGGC-SEEEEECSCHHHHHHHHH
T ss_pred             CCCCCcEEEEeccCC-CHHHHHHhcccC-CeEEEEeCCHHHHHHHHH
Confidence            345788999999874 333333333334 489999999999998875

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.30  E-value=3.2  Score=31.73  Aligned_cols=74  Identities=19%  Similarity=0.207  Sum_probs=47.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhh----------HHHHHHcCCceEeCCCCCCchHHHHHHHHhcCCcc
Q 022819          196 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK----------CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGAD  265 (291)
Q Consensus       196 ~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~----------~~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~g~~d  265 (291)
                      +++++|.+.+|..+++.+...|. .|+++.+.+++          .+++++.+.......+-.++.+.+.++++   .+|
T Consensus         2 kiv~~~~~~~g~~~l~~L~~~g~-~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~---~~D   77 (203)
T d2blna2           2 KTVVFAYHDMGCLGIEALLAAGY-EISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQL---SPD   77 (203)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTC-EEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHT---CCS
T ss_pred             eEEEEecCHHHHHHHHHHHHCCC-CEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhh---ccc
Confidence            46777888899999999998898 77666553332          34566667765432222235555555553   789


Q ss_pred             EEEEccCC
Q 022819          266 YSFECIGD  273 (291)
Q Consensus       266 ~vld~~g~  273 (291)
                      +++-....
T Consensus        78 lii~~g~~   85 (203)
T d2blna2          78 VIFSFYYR   85 (203)
T ss_dssp             EEEEESCC
T ss_pred             ceeeeecc
Confidence            88865433

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=80.18  E-value=3.7  Score=33.38  Aligned_cols=46  Identities=22%  Similarity=0.240  Sum_probs=35.5

Q ss_pred             EEE-cCChHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCceEe
Q 022819          198 VIF-GLGTVGLSVAQGAKARGASRIIGVDT--NPEKCEKAKAFGVTEFL  243 (291)
Q Consensus       198 lV~-G~g~~G~~~i~~a~~~g~~~vi~~~~--~~~~~~~a~~~g~~~~i  243 (291)
                      ++. .+|..|.+++..|+.+|.+-++.+..  ++++.+.++.+|+..+.
T Consensus        72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~  120 (318)
T d1v71a1          72 VLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIM  120 (318)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEE
T ss_pred             eeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEe
Confidence            444 56999999999999999966666633  45678888999987754

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.09  E-value=2.7  Score=32.13  Aligned_cols=43  Identities=23%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 022819          192 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA  236 (291)
Q Consensus       192 ~~~~~vlV~G~g~~G~~~i~~a~~~g~~~vi~~~~~~~~~~~a~~  236 (291)
                      -+|++||-.|+| .|..++.++ .+|+.+|++++.+++..+.+++
T Consensus        45 l~g~~vLDlg~G-tG~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~   87 (201)
T d1wy7a1          45 IEGKVVADLGAG-TGVLSYGAL-LLGAKEVICVEVDKEAVDVLIE   87 (201)
T ss_dssp             STTCEEEEETCT-TCHHHHHHH-HTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECcCc-chHHHHHHH-HcCCCEEEEEcCcHHHHHHHHH
Confidence            468899999774 233333433 4677799999999998888764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=80.07  E-value=2.8  Score=33.18  Aligned_cols=29  Identities=24%  Similarity=0.552  Sum_probs=24.6

Q ss_pred             EEEEcC-ChHHHHHHHHHHHcCCCeEEEEc
Q 022819          197 VVIFGL-GTVGLSVAQGAKARGASRIIGVD  225 (291)
Q Consensus       197 vlV~G~-g~~G~~~i~~a~~~g~~~vi~~~  225 (291)
                      |||+|+ |.+|..++..+...|...|++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            788886 99999999888888975788885

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.07  E-value=1.2  Score=32.31  Aligned_cols=39  Identities=23%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHcCC-CeEEEEcCChhhHHHH
Q 022819          196 TVVIFGL-GTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKA  234 (291)
Q Consensus       196 ~vlV~G~-g~~G~~~i~~a~~~g~-~~vi~~~~~~~~~~~a  234 (291)
                      +|.|+|+ |.+|..++.++...+. .+++.+|.++.+.+.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~   42 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA   42 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH
Confidence            6889996 9999999998888875 7899999877665443